AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013058.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013058.01.T01 MTR_5g063450 88.166 169 16 2 1 165 149 317 2.00e-91 276
MsG0380013058.01.T01 MTR_7g094030 43.522 301 141 11 8 285 167 461 1.99e-53 181
MsG0380013058.01.T01 MTR_1g115250 44.492 236 121 5 53 279 207 441 3.33e-50 171
MsG0380013058.01.T01 MTR_2g082880 41.132 265 142 8 1 254 142 403 2.38e-47 164
MsG0380013058.01.T01 MTR_2g082800 43.210 243 130 7 1 238 160 399 6.23e-41 146
MsG0380013058.01.T01 MTR_2g082850 44.608 204 102 6 1 195 163 364 3.97e-36 133
MsG0380013058.01.T01 MTR_2g072720 33.000 300 181 10 1 285 182 476 7.17e-29 115
MsG0380013058.01.T01 MTR_7g094050 50.427 117 52 2 157 268 1 116 2.98e-26 100
MsG0380013058.01.T01 MTR_2g072730 31.338 284 175 9 16 284 175 453 1.65e-23 99.8
MsG0380013058.01.T01 MTR_2g072530 29.323 266 172 7 33 285 183 445 9.14e-23 97.8
MsG0380013058.01.T01 MTR_5g005700 30.970 268 161 7 34 285 232 491 1.26e-22 97.4
MsG0380013058.01.T01 MTR_1g025870 29.965 287 177 8 8 276 233 513 6.10e-22 95.5
MsG0380013058.01.T01 MTR_2g072710 34.659 176 107 3 113 285 23 193 2.66e-21 89.4
MsG0380013058.01.T01 MTR_4g032845 30.405 296 187 11 5 285 150 441 4.17e-20 90.1
MsG0380013058.01.T01 MTR_6g022350 30.534 262 169 6 20 272 220 477 3.26e-19 87.4
MsG0380013058.01.T01 MTR_2g072650 49.383 81 40 1 206 285 156 236 2.10e-14 71.6
MsG0380013058.01.T01 MTR_5g007090 38.655 119 67 4 167 281 346 462 6.28e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 69 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGTTAAATTTCGCTAAAT+TGG 0.191519 3:-29661653 MsG0380013058.01.T01:CDS
CATTCCTGACTTTCAAATAT+TGG 0.191554 3:-29662164 MsG0380013058.01.T01:CDS
GACCTACCTAACCACATTAT+TGG 0.229735 3:-29663292 MsG0380013058.01.T01:five_prime_UTR
ATCAGTTTCTTAAGAGAATT+AGG 0.231190 3:-29661479 MsG0380013058.01.T01:three_prime_UTR
TTTCATAACTAATTCTTCTA+AGG 0.252556 3:+29662914 None:intergenic
ATTCCTGACTTTCAAATATT+GGG 0.284897 3:-29662163 MsG0380013058.01.T01:CDS
TCTGCAAATATTATGCTATA+TGG 0.307009 3:-29662558 MsG0380013058.01.T01:CDS
CGGCGGTTCTGTTCCTTCTC+AGG 0.317321 3:-29664551 MsG0380013058.01.T01:five_prime_UTR
CTCGTGTTGTCCTAAGTTGT+TGG 0.331323 3:-29661593 MsG0380013058.01.T01:CDS
GTAAAATTTGAAAGATTTGC+TGG 0.339734 3:-29661685 MsG0380013058.01.T01:CDS
CTTTCAAATATTGGGTCATC+TGG 0.346579 3:-29662155 MsG0380013058.01.T01:CDS
TAAAGCTTTGTTTGCGTAGT+AGG 0.346849 3:-29662467 MsG0380013058.01.T01:CDS
CCGGCATAAACGTAGAATTA+AGG 0.357619 3:+29661734 None:intergenic
ATCTCAAGTGATCTGAGAAC+TGG 0.360084 3:+29662777 None:intergenic
GAAGTTTGTTCAATGGACTA+TGG 0.361755 3:-29662696 MsG0380013058.01.T01:CDS
AGTTGTTGGGCCAGAAGAAA+TGG 0.370869 3:-29661579 MsG0380013058.01.T01:CDS
GCTTTCAAGATCACCATGTT+TGG 0.375297 3:-29662095 MsG0380013058.01.T01:CDS
TCTACTTGAAGTTTGTTCAA+TGG 0.399223 3:-29662703 MsG0380013058.01.T01:CDS
TGACCCAATATTTGAAAGTC+AGG 0.400469 3:+29662160 None:intergenic
CTCAGATCACTTGAGATAGA+AGG 0.413215 3:-29662771 MsG0380013058.01.T01:CDS
GGAACAGAACCGCCGTGAAC+GGG 0.413294 3:+29664559 None:intergenic
ATTCGAAAAGGGAATTAGAT+TGG 0.415522 3:+29662943 None:intergenic
TCGTGTTGTCCTAAGTTGTT+GGG 0.416022 3:-29661592 MsG0380013058.01.T01:CDS
CTAAGGACTGGCATTCGAAA+AGG 0.424515 3:+29662931 None:intergenic
TCAGAGTCTGTTCCCGTTCA+CGG 0.432471 3:-29664571 None:intergenic
AGAAACCTACTCATTAATAT+CGG 0.438053 3:+29663033 None:intergenic
ATCACCATGTTTGGAGACTC+TGG 0.444590 3:-29662086 MsG0380013058.01.T01:CDS
AATCTCTGATTGAAAAGAAC+CGG 0.454523 3:+29662608 None:intergenic
GTGCTAACGGCCTCTTTAGC+AGG 0.455614 3:+29663250 None:intergenic
TGGAAGACGCGTTCTTCACT+CGG 0.463835 3:+29662963 None:intergenic
ATAGAACCAATAATGTGGTT+AGG 0.470076 3:+29663286 None:intergenic
TCTGTTCACTATGACTATGA+TGG 0.470447 3:-29663058 MsG0380013058.01.T01:five_prime_UTR
TTCTTCTGGCCCAACAACTT+AGG 0.478604 3:+29661583 None:intergenic
GTTGTTGGGCCAGAAGAAAT+GGG 0.495328 3:-29661578 MsG0380013058.01.T01:CDS
TAACTAATTCTTCTAAGGAC+TGG 0.502259 3:+29662919 None:intergenic
TAAGGACTGGCATTCGAAAA+GGG 0.507448 3:+29662932 None:intergenic
CTGGATCTCGACTTTGCAAC+CGG 0.511629 3:-29662136 MsG0380013058.01.T01:CDS
CCTTAATTCTACGTTTATGC+CGG 0.514031 3:-29661734 MsG0380013058.01.T01:CDS
CGGTTCTGTTCCTTCTCAGG+TGG 0.522775 3:-29664548 MsG0380013058.01.T01:five_prime_UTR
TCTTAGTTATTTGTTTCGAT+CGG 0.531025 3:-29662824 MsG0380013058.01.T01:CDS
TGGTTCCGATATTAATGAGT+AGG 0.545249 3:-29663038 MsG0380013058.01.T01:five_prime_UTR
TGCTATATGGTTCAAGTAGG+AGG 0.546606 3:-29662545 MsG0380013058.01.T01:CDS
TAGAGATGAAAGACTAGCAA+AGG 0.551985 3:+29662869 None:intergenic
ACGAGTCTTCTCAGCGGCTA+AGG 0.553181 3:-29663342 MsG0380013058.01.T01:five_prime_UTR
GATGAATAATGCTCAAGCCT+TGG 0.557285 3:-29661629 MsG0380013058.01.T01:CDS
CTTGCGTTCTCTCGAAGAGG+TGG 0.561023 3:-29663228 MsG0380013058.01.T01:five_prime_UTR
GCTTTGTTTGCGTAGTAGGA+AGG 0.561791 3:-29662463 MsG0380013058.01.T01:intron
ATCAGAGATTATTCTGCTAG+AGG 0.568172 3:-29662595 MsG0380013058.01.T01:CDS
AGGAACAGAACCGCCGTGAA+CGG 0.585524 3:+29664558 None:intergenic
GCAGAGACTTCCACCTGAGA+AGG 0.585801 3:+29664538 None:intergenic
CGAGAGAACGCAAGTGCTAA+CGG 0.587002 3:+29663237 None:intergenic
GATGAAAGACTAGCAAAGGA+AGG 0.589461 3:+29662873 None:intergenic
TGGACTATGGTACATGCGTA+AGG 0.597804 3:-29662683 MsG0380013058.01.T01:CDS
ATTGAACAAACTTCAAGTAG+AGG 0.600496 3:+29662705 None:intergenic
CGAGAAAGTAATCCTCTCCA+AGG 0.600644 3:+29661612 None:intergenic
TTAGGAATGCAGAATGCTGA+TGG 0.606853 3:-29661461 MsG0380013058.01.T01:three_prime_UTR
TTGAACAAACTTCAAGTAGA+GGG 0.607611 3:+29662706 None:intergenic
AACCAATAATGTGGTTAGGT+AGG 0.611931 3:+29663290 None:intergenic
AGATAGAAGGAGGACGCACA+TGG 0.613286 3:-29662758 MsG0380013058.01.T01:CDS
AAAACCAGAGTCTCCAAACA+TGG 0.617401 3:+29662082 None:intergenic
GCACTTGCGTTCTCTCGAAG+AGG 0.617846 3:-29663231 MsG0380013058.01.T01:five_prime_UTR
TCTCAAGTGATCTGAGAACT+GGG 0.618958 3:+29662778 None:intergenic
TTATGCTATATGGTTCAAGT+AGG 0.633988 3:-29662548 MsG0380013058.01.T01:CDS
AAAGAATAGAACCAATAATG+TGG 0.640807 3:+29663281 None:intergenic
AGATCACTTGAGATAGAAGG+AGG 0.655953 3:-29662768 MsG0380013058.01.T01:CDS
ATAATGCTCAAGCCTTGGAG+AGG 0.666530 3:-29661624 MsG0380013058.01.T01:CDS
CAGCGGCTAAGGTGCAACAA+CGG 0.677527 3:-29663331 MsG0380013058.01.T01:five_prime_UTR
GAGTCTGTTCCCGTTCACGG+CGG 0.744762 3:-29664568 None:intergenic
ATGAGAACGAGTCTTCTCAG+CGG 0.779847 3:-29663348 MsG0380013058.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACAAATCTTTTTTTTTAA+AGG + Chr3:29662166-29662185 None:intergenic 10.0%
!!! AACAAATCTTTTTTTTTAAA+GGG + Chr3:29662165-29662184 None:intergenic 10.0%
!!! TTATTTTTGTGTAATAAAAA+GGG + Chr3:29662796-29662815 None:intergenic 10.0%
!!! TTTATTTTTGTGTAATAAAA+AGG + Chr3:29662797-29662816 None:intergenic 10.0%
!! AAACTGAGTATAAAATTAAA+GGG + Chr3:29661628-29661647 None:intergenic 15.0%
!! AAATTAATATACTAACAGAA+TGG + Chr3:29661571-29661590 None:intergenic 15.0%
!! TAAACTGAGTATAAAATTAA+AGG + Chr3:29661629-29661648 None:intergenic 15.0%
!!! ACATATTATCTTTTATTTGT+AGG - Chr3:29662532-29662551 MsG0380013058.01.T01:CDS 15.0%
!!! AGTTATAGAATTTTTATCTT+AGG - Chr3:29664445-29664464 MsG0380013058.01.T01:intron 15.0%
!!! AGTTTTTACAATTTGTAAAT+AGG - Chr3:29662825-29662844 MsG0380013058.01.T01:CDS 15.0%
!!! GTTTTTACAATTTGTAAATA+GGG - Chr3:29662826-29662845 MsG0380013058.01.T01:CDS 15.0%
!!! TGATTTTCTCAAATTATTAA+CGG + Chr3:29661677-29661696 None:intergenic 15.0%
!!! TTCAAATTTTACTACTTTAA+GGG + Chr3:29664258-29664277 None:intergenic 15.0%
!!! TTTCAAATTTTACTACTTTA+AGG + Chr3:29664259-29664278 None:intergenic 15.0%
!! ATTCTTCCCATATTTAAAAA+AGG - Chr3:29661969-29661988 MsG0380013058.01.T01:intron 20.0%
!! ATTTGCTCATAGATAAATAT+AGG - Chr3:29663928-29663947 MsG0380013058.01.T01:intron 20.0%
!! TATTAATGTATTGCATAACA+TGG + Chr3:29664151-29664170 None:intergenic 20.0%
!! TTTCATAACTAATTCTTCTA+AGG + Chr3:29663040-29663059 None:intergenic 20.0%
!!! AAAAATAGAATTTTCTGTCT+TGG + Chr3:29662101-29662120 None:intergenic 20.0%
!!! AAGACAGAAAATTCTATTTT+TGG - Chr3:29662100-29662119 MsG0380013058.01.T01:CDS 20.0%
!!! ACATTCTCCTTTTTTAAATA+TGG + Chr3:29661979-29661998 None:intergenic 20.0%
!!! ATCTTTGTTTTATTCTACAT+GGG - Chr3:29663597-29663616 MsG0380013058.01.T01:intron 20.0%
!!! CATTCTCCTTTTTTAAATAT+GGG + Chr3:29661978-29661997 None:intergenic 20.0%
!!! TAACAAAAACTTACTTCTTT+TGG + Chr3:29662032-29662051 None:intergenic 20.0%
!!! TATCTTTGTTTTATTCTACA+TGG - Chr3:29663596-29663615 MsG0380013058.01.T01:intron 20.0%
!!! TCACATAAGCATTTTTTTTA+CGG - Chr3:29663650-29663669 MsG0380013058.01.T01:intron 20.0%
! AAAGAATAGAACCAATAATG+TGG + Chr3:29662673-29662692 None:intergenic 25.0%
! ACTGAAATTTATAGCAAACT+CGG + Chr3:29664051-29664070 None:intergenic 25.0%
! AGAAACCTACTCATTAATAT+CGG + Chr3:29662921-29662940 None:intergenic 25.0%
! ATCAGTTTCTTAAGAGAATT+AGG - Chr3:29664472-29664491 MsG0380013058.01.T01:intron 25.0%
! ATTCCTGACTTTCAAATATT+GGG - Chr3:29663788-29663807 MsG0380013058.01.T01:intron 25.0%
! GTAAAATTTGAAAGATTTGC+TGG - Chr3:29664266-29664285 MsG0380013058.01.T01:intron 25.0%
! TCTGCAAATATTATGCTATA+TGG - Chr3:29663393-29663412 MsG0380013058.01.T01:five_prime_UTR 25.0%
! TCTTAGTTATTTGTTTCGAT+CGG - Chr3:29663127-29663146 MsG0380013058.01.T01:five_prime_UTR 25.0%
! TGAGTTAAATTTCGCTAAAT+TGG - Chr3:29664298-29664317 MsG0380013058.01.T01:intron 25.0%
!! ATTTTTGTTCTTTCTCATCA+AGG - Chr3:29663733-29663752 MsG0380013058.01.T01:intron 25.0%
!! CTTGCTATAAAAATGGAATT+GGG - Chr3:29662557-29662576 MsG0380013058.01.T01:CDS 25.0%
!!! ACTTGCTATAAAAATGGAAT+TGG - Chr3:29662556-29662575 MsG0380013058.01.T01:CDS 25.0%
AAGAAAGTAAGGGTAAGAAA+AGG + Chr3:29661476-29661495 None:intergenic 30.0%
AAGAACAAAAATTGTGTGTC+AGG + Chr3:29663725-29663744 None:intergenic 30.0%
AATCTCTGATTGAAAAGAAC+CGG + Chr3:29663346-29663365 None:intergenic 30.0%
AGAAAGAGAAAAACTATCGA+TGG + Chr3:29662876-29662895 None:intergenic 30.0%
AGGGTAAATAAAAAGCAATC+CGG + Chr3:29664239-29664258 None:intergenic 30.0%
ATAGAACCAATAATGTGGTT+AGG + Chr3:29662668-29662687 None:intergenic 30.0%
ATTCGAAAAGGGAATTAGAT+TGG + Chr3:29663011-29663030 None:intergenic 30.0%
ATTGAACAAACTTCAAGTAG+AGG + Chr3:29663249-29663268 None:intergenic 30.0%
CAGTGAATCAAAGAAAGTAA+GGG + Chr3:29661486-29661505 None:intergenic 30.0%
CATTCCTGACTTTCAAATAT+TGG - Chr3:29663787-29663806 MsG0380013058.01.T01:intron 30.0%
GTGTCATGTGACAAAATAAA+GGG - Chr3:29661905-29661924 MsG0380013058.01.T01:intron 30.0%
TATACTCAGTTTATGAAGCA+CGG - Chr3:29661636-29661655 MsG0380013058.01.T01:CDS 30.0%
TCAGTGAATCAAAGAAAGTA+AGG + Chr3:29661487-29661506 None:intergenic 30.0%
TGACATATACATGAGGTTTA+CGG - Chr3:29661935-29661954 MsG0380013058.01.T01:intron 30.0%
TGCAGACTAAATTTATGTTG+TGG + Chr3:29662387-29662406 None:intergenic 30.0%
TGGTTACAAACATTGTTGAA+TGG + Chr3:29662335-29662354 None:intergenic 30.0%
TGTCATGTGACAAAATAAAG+GGG - Chr3:29661906-29661925 MsG0380013058.01.T01:intron 30.0%
TGTGTCATGTGACAAAATAA+AGG - Chr3:29661904-29661923 MsG0380013058.01.T01:intron 30.0%
TTATGCTATATGGTTCAAGT+AGG - Chr3:29663403-29663422 MsG0380013058.01.T01:intron 30.0%
TTGAACAAACTTCAAGTAGA+GGG + Chr3:29663248-29663267 None:intergenic 30.0%
TTTCGGTTTCTATGAGAAAA+GGG + Chr3:29661837-29661856 None:intergenic 30.0%
! AGCATATCAGTGATTTTGAA+TGG - Chr3:29664527-29664546 MsG0380013058.01.T01:five_prime_UTR 30.0%
! TAACATTTTCCCATTTCTTC+TGG + Chr3:29664385-29664404 None:intergenic 30.0%
! TAACTAATTCTTCTAAGGAC+TGG + Chr3:29663035-29663054 None:intergenic 30.0%
! TCTACTTGAAGTTTGTTCAA+TGG - Chr3:29663248-29663267 MsG0380013058.01.T01:five_prime_UTR 30.0%
!! GTAGGAACTTGCTATAAAAA+TGG - Chr3:29662550-29662569 MsG0380013058.01.T01:CDS 30.0%
!!! CTTGCAAAGTTTTGTTATAC+CGG - Chr3:29663324-29663343 MsG0380013058.01.T01:five_prime_UTR 30.0%
!!! TTGGGTTTTGTTAATGCATA+TGG - Chr3:29662575-29662594 MsG0380013058.01.T01:CDS 30.0%
AACCAATAATGTGGTTAGGT+AGG + Chr3:29662664-29662683 None:intergenic 35.0%
ATACATTGTTGTGCATAGTG+AGG - Chr3:29662445-29662464 MsG0380013058.01.T01:intron 35.0%
ATCAGAGATTATTCTGCTAG+AGG - Chr3:29663356-29663375 MsG0380013058.01.T01:five_prime_UTR 35.0%
CCTTAATTCTACGTTTATGC+CGG - Chr3:29664217-29664236 MsG0380013058.01.T01:intron 35.0%
CTTTCAAATATTGGGTCATC+TGG - Chr3:29663796-29663815 MsG0380013058.01.T01:intron 35.0%
CTTTCGGTTTCTATGAGAAA+AGG + Chr3:29661838-29661857 None:intergenic 35.0%
GACATATACATGAGGTTTAC+GGG - Chr3:29661936-29661955 MsG0380013058.01.T01:intron 35.0%
TACATTGTTGTGCATAGTGA+GGG - Chr3:29662446-29662465 MsG0380013058.01.T01:intron 35.0%
TAGAGATGAAAGACTAGCAA+AGG + Chr3:29663085-29663104 None:intergenic 35.0%
TATTGTTAGCCATCTAACTC+CGG + Chr3:29661872-29661891 None:intergenic 35.0%
TCTGTTCACTATGACTATGA+TGG - Chr3:29662893-29662912 MsG0380013058.01.T01:CDS 35.0%
TGACCCAATATTTGAAAGTC+AGG + Chr3:29663794-29663813 None:intergenic 35.0%
TGGTTCACAATCAGAGATAA+TGG + Chr3:29664131-29664150 None:intergenic 35.0%
TGGTTCCGATATTAATGAGT+AGG - Chr3:29662913-29662932 MsG0380013058.01.T01:exon 35.0%
TTAGATGGCTAACAATAGCA+GGG - Chr3:29661875-29661894 MsG0380013058.01.T01:intron 35.0%
TTCGGTTTCTATGAGAAAAG+GGG + Chr3:29661836-29661855 None:intergenic 35.0%
TTTGACTGATCATCAAGTAC+AGG - Chr3:29664178-29664197 MsG0380013058.01.T01:intron 35.0%
! CTTAAGCAGTTTTTGTCTTG+TGG - Chr3:29663567-29663586 MsG0380013058.01.T01:intron 35.0%
! CTTTTCTCATAGAAACCGAA+AGG - Chr3:29661836-29661855 MsG0380013058.01.T01:intron 35.0%
! TTCTTTTCTTCCTGCTAAAG+AGG - Chr3:29662691-29662710 MsG0380013058.01.T01:CDS 35.0%
!! GAAGTTTGTTCAATGGACTA+TGG - Chr3:29663255-29663274 MsG0380013058.01.T01:five_prime_UTR 35.0%
!! TAAAGCTTTGTTTGCGTAGT+AGG - Chr3:29663484-29663503 MsG0380013058.01.T01:intron 35.0%
!! TATATGTGTCTGTGTCGTTT+CGG - Chr3:29661713-29661732 MsG0380013058.01.T01:CDS 35.0%
AAAACCAGAGTCTCCAAACA+TGG + Chr3:29663872-29663891 None:intergenic 40.0%
ACTTACCAACTCTTGCAAGT+TGG + Chr3:29662355-29662374 None:intergenic 40.0%
AGATCACTTGAGATAGAAGG+AGG - Chr3:29663183-29663202 MsG0380013058.01.T01:five_prime_UTR 40.0%
ATATACATGAGGTTTACGGG+AGG - Chr3:29661939-29661958 MsG0380013058.01.T01:intron 40.0%
ATCTCAAGTGATCTGAGAAC+TGG + Chr3:29663177-29663196 None:intergenic 40.0%
CCGGCATAAACGTAGAATTA+AGG + Chr3:29664220-29664239 None:intergenic 40.0%
CTCAGATCACTTGAGATAGA+AGG - Chr3:29663180-29663199 MsG0380013058.01.T01:five_prime_UTR 40.0%
GACCTACCTAACCACATTAT+TGG - Chr3:29662659-29662678 MsG0380013058.01.T01:CDS 40.0%
GATGAAAGACTAGCAAAGGA+AGG + Chr3:29663081-29663100 None:intergenic 40.0%
GATGAATAATGCTCAAGCCT+TGG - Chr3:29664322-29664341 MsG0380013058.01.T01:intron 40.0%
GCTTTCAAGATCACCATGTT+TGG - Chr3:29663856-29663875 MsG0380013058.01.T01:intron 40.0%
GTGTGAGTGACATATACATG+AGG - Chr3:29661928-29661947 MsG0380013058.01.T01:intron 40.0%
GTTAGATGGCTAACAATAGC+AGG - Chr3:29661874-29661893 MsG0380013058.01.T01:intron 40.0%
TAGATGGCTAACAATAGCAG+GGG - Chr3:29661876-29661895 MsG0380013058.01.T01:intron 40.0%
TCGGTTTCTATGAGAAAAGG+GGG + Chr3:29661835-29661854 None:intergenic 40.0%
TCGTGTTGTCCTAAGTTGTT+GGG - Chr3:29664359-29664378 MsG0380013058.01.T01:intron 40.0%
TCTCAAGTGATCTGAGAACT+GGG + Chr3:29663176-29663195 None:intergenic 40.0%
TGCTATATGGTTCAAGTAGG+AGG - Chr3:29663406-29663425 MsG0380013058.01.T01:intron 40.0%
TGCTTCATAGTAGGCACTAA+AGG - Chr3:29661788-29661807 MsG0380013058.01.T01:intron 40.0%
TGTAACCAACTTGCAAGAGT+TGG - Chr3:29662347-29662366 MsG0380013058.01.T01:intron 40.0%
TGTATCCTTGTTAACCGCTT+TGG + Chr3:29662430-29662449 None:intergenic 40.0%
TTAGGAATGCAGAATGCTGA+TGG - Chr3:29664490-29664509 MsG0380013058.01.T01:intron 40.0%
TTAGTGCCTACTATGAAGCA+TGG + Chr3:29661788-29661807 None:intergenic 40.0%
! TAAGGACTGGCATTCGAAAA+GGG + Chr3:29663022-29663041 None:intergenic 40.0%
!!! TTTGGAGACTCTGGTTTTGA+AGG - Chr3:29663874-29663893 MsG0380013058.01.T01:intron 40.0%
ACCGAAAGGTTAACACCAAC+CGG - Chr3:29661850-29661869 MsG0380013058.01.T01:intron 45.0%
ACTCAGTTTATGAAGCACGG+AGG - Chr3:29661639-29661658 MsG0380013058.01.T01:CDS 45.0%
AGAATGTTAAACAGTGCCCC+GGG - Chr3:29661992-29662011 MsG0380013058.01.T01:intron 45.0%
AGGATCCAAAGCGGTTAACA+AGG - Chr3:29662422-29662441 MsG0380013058.01.T01:intron 45.0%
AGTTGTTGGGCCAGAAGAAA+TGG - Chr3:29664372-29664391 MsG0380013058.01.T01:intron 45.0%
ATAATGCTCAAGCCTTGGAG+AGG - Chr3:29664327-29664346 MsG0380013058.01.T01:intron 45.0%
ATCACCATGTTTGGAGACTC+TGG - Chr3:29663865-29663884 MsG0380013058.01.T01:intron 45.0%
ATGAGAACGAGTCTTCTCAG+CGG - Chr3:29662603-29662622 MsG0380013058.01.T01:CDS 45.0%
CATGCCAGACAAAAATTCGC+CGG + Chr3:29663837-29663856 None:intergenic 45.0%
CGAGAAAGTAATCCTCTCCA+AGG + Chr3:29664342-29664361 None:intergenic 45.0%
CTCGTGTTGTCCTAAGTTGT+TGG - Chr3:29664358-29664377 MsG0380013058.01.T01:intron 45.0%
GAGAATGTTAAACAGTGCCC+CGG - Chr3:29661991-29662010 MsG0380013058.01.T01:intron 45.0%
GAGTGTCCATGCTTCATAGT+AGG - Chr3:29661779-29661798 MsG0380013058.01.T01:intron 45.0%
GTTGTTGGGCCAGAAGAAAT+GGG - Chr3:29664373-29664392 MsG0380013058.01.T01:intron 45.0%
GTTTCTATGAGAAAAGGGGG+TGG + Chr3:29661832-29661851 None:intergenic 45.0%
TAACACCAACCGGAGTTAGA+TGG - Chr3:29661860-29661879 MsG0380013058.01.T01:intron 45.0%
TATGAAGCATGGACACTCCT+CGG + Chr3:29661777-29661796 None:intergenic 45.0%
TGGACTATGGTACATGCGTA+AGG - Chr3:29663268-29663287 MsG0380013058.01.T01:five_prime_UTR 45.0%
TTCTTCTGGCCCAACAACTT+AGG + Chr3:29664371-29664390 None:intergenic 45.0%
! CTAAGGACTGGCATTCGAAA+AGG + Chr3:29663023-29663042 None:intergenic 45.0%
!! GCTTTGTTTGCGTAGTAGGA+AGG - Chr3:29663488-29663507 MsG0380013058.01.T01:intron 45.0%
!! TCCGGTTGGTGTTAACCTTT+CGG + Chr3:29661854-29661873 None:intergenic 45.0%
!! AAATCTTAATTAAAAAAAAT+TGG + Chr3:29662227-29662246 None:intergenic 5.0%
!! TATCTATAAATAAATATAAT+AGG + Chr3:29662296-29662315 None:intergenic 5.0%
AGATAGAAGGAGGACGCACA+TGG - Chr3:29663193-29663212 MsG0380013058.01.T01:five_prime_UTR 50.0%
AGTCTGCAAGATTACACCCC+CGG - Chr3:29662399-29662418 MsG0380013058.01.T01:intron 50.0%
ATGGCTAACAATAGCAGGGG+AGG - Chr3:29661879-29661898 MsG0380013058.01.T01:intron 50.0%
CGAAGAGGTGGAAAAACGTG+TGG - Chr3:29662735-29662754 MsG0380013058.01.T01:CDS 50.0%
CGAGAGAACGCAAGTGCTAA+CGG + Chr3:29662717-29662736 None:intergenic 50.0%
CTGGATCTCGACTTTGCAAC+CGG - Chr3:29663815-29663834 MsG0380013058.01.T01:intron 50.0%
GAATGTTAAACAGTGCCCCG+GGG - Chr3:29661993-29662012 MsG0380013058.01.T01:intron 50.0%
GTTAGCCATCTAACTCCGGT+TGG + Chr3:29661868-29661887 None:intergenic 50.0%
TACGTGTCCAACACCGGAAA+CGG - Chr3:29661739-29661758 MsG0380013058.01.T01:CDS 50.0%
TGGAAGACGCGTTCTTCACT+CGG + Chr3:29662991-29663010 None:intergenic 50.0%
! ATGGACACTCCTCGGATTAG+AGG + Chr3:29661769-29661788 None:intergenic 50.0%
! GCAACCGGCGAATTTTTGTC+TGG - Chr3:29663830-29663849 MsG0380013058.01.T01:intron 50.0%
! GTTAACCGCTTTGGATCCTC+CGG + Chr3:29662421-29662440 None:intergenic 50.0%
! TTAACCGCTTTGGATCCTCC+GGG + Chr3:29662420-29662439 None:intergenic 50.0%
! TTGGTGCTTAACCAATGCCC+CGG + Chr3:29662013-29662032 None:intergenic 50.0%
!! GATTAGAGGTGTCCCGTTTC+CGG + Chr3:29661755-29661774 None:intergenic 50.0%
AACGGGACACCTCTAATCCG+AGG - Chr3:29661757-29661776 MsG0380013058.01.T01:intron 55.0%
ACGAGTCTTCTCAGCGGCTA+AGG - Chr3:29662609-29662628 MsG0380013058.01.T01:CDS 55.0%
ACGTGTCCAACACCGGAAAC+GGG - Chr3:29661740-29661759 MsG0380013058.01.T01:CDS 55.0%
ATTCCTTAACCAGTGCCCCC+GGG - Chr3:29662123-29662142 MsG0380013058.01.T01:CDS 55.0%
CAGCGGCTAAGGTGCAACAA+CGG - Chr3:29662620-29662639 MsG0380013058.01.T01:CDS 55.0%
CGGTTCTGTTCCTTCTCAGG+TGG - Chr3:29661403-29661422 MsG0380013058.01.T01:three_prime_UTR 55.0%
CTTGCGTTCTCTCGAAGAGG+TGG - Chr3:29662723-29662742 MsG0380013058.01.T01:CDS 55.0%
GATTCCTTAACCAGTGCCCC+CGG - Chr3:29662122-29662141 MsG0380013058.01.T01:CDS 55.0%
GCACTTGCGTTCTCTCGAAG+AGG - Chr3:29662720-29662739 MsG0380013058.01.T01:CDS 55.0%
GCAGAGACTTCCACCTGAGA+AGG + Chr3:29661416-29661435 None:intergenic 55.0%
GTGCTAACGGCCTCTTTAGC+AGG + Chr3:29662704-29662723 None:intergenic 55.0%
TCTTGTTAACCAGTGCCCCG+GGG + Chr3:29662142-29662161 None:intergenic 55.0%
TGGTGCTTAACCAATGCCCC+GGG + Chr3:29662012-29662031 None:intergenic 55.0%
! GTCTTGTTAACCAGTGCCCC+GGG + Chr3:29662143-29662162 None:intergenic 55.0%
! TAACCGCTTTGGATCCTCCG+GGG + Chr3:29662419-29662438 None:intergenic 55.0%
!! CGGTGTTACGTGTCCAACAC+CGG - Chr3:29661733-29661752 MsG0380013058.01.T01:CDS 55.0%
!! GGTCTTGTTAACCAGTGCCC+CGG + Chr3:29662144-29662163 None:intergenic 55.0%
AGGTGTCCCGTTTCCGGTGT+TGG + Chr3:29661749-29661768 None:intergenic 60.0%
CGGCGGTTCTGTTCCTTCTC+AGG - Chr3:29661400-29661419 MsG0380013058.01.T01:three_prime_UTR 60.0%
CTGCAAGATTACACCCCCGG+AGG - Chr3:29662402-29662421 MsG0380013058.01.T01:intron 60.0%
CTTGTTAACCAGTGCCCCGG+GGG + Chr3:29662141-29662160 None:intergenic 60.0%
GGTGCTTAACCAATGCCCCG+GGG + Chr3:29662011-29662030 None:intergenic 60.0%
TAAACAGTGCCCCGGGGCAT+TGG - Chr3:29661999-29662018 MsG0380013058.01.T01:intron 60.0%
TTCCTTAACCAGTGCCCCCG+GGG - Chr3:29662124-29662143 MsG0380013058.01.T01:CDS 60.0%
! AACCGCTTTGGATCCTCCGG+GGG + Chr3:29662418-29662437 None:intergenic 60.0%
CACCCCCGGAGGATCCAAAG+CGG - Chr3:29662413-29662432 MsG0380013058.01.T01:intron 65.0%
!! TGCCCCGGGGGCACTGGTTA+AGG + Chr3:29662129-29662148 None:intergenic 70.0%
AACCAGTGCCCCCGGGGCAC+TGG - Chr3:29662130-29662149 MsG0380013058.01.T01:CDS 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG + Chr3:29662135-29662154 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 29661395 29664578 29661395 ID=MsG0380013058.01;Name=MsG0380013058.01
Chr3 mRNA 29661395 29664578 29661395 ID=MsG0380013058.01.T01;Parent=MsG0380013058.01;Name=MsG0380013058.01.T01;_AED=0.02;_eAED=0.02;_QI=567|1|1|1|0.66|0.5|4|112|287
Chr3 exon 29661395 29661773 29661395 ID=MsG0380013058.01.T01:exon:566;Parent=MsG0380013058.01.T01
Chr3 exon 29662078 29662218 29662078 ID=MsG0380013058.01.T01:exon:565;Parent=MsG0380013058.01.T01
Chr3 exon 29662464 29663419 29662464 ID=MsG0380013058.01.T01:exon:564;Parent=MsG0380013058.01.T01
Chr3 exon 29664512 29664578 29664512 ID=MsG0380013058.01.T01:exon:563;Parent=MsG0380013058.01.T01
Chr3 five_prime_UTR 29664512 29664578 29664512 ID=MsG0380013058.01.T01:five_prime_utr;Parent=MsG0380013058.01.T01
Chr3 five_prime_UTR 29662920 29663419 29662920 ID=MsG0380013058.01.T01:five_prime_utr;Parent=MsG0380013058.01.T01
Chr3 CDS 29662464 29662919 29662464 ID=MsG0380013058.01.T01:cds;Parent=MsG0380013058.01.T01
Chr3 CDS 29662078 29662218 29662078 ID=MsG0380013058.01.T01:cds;Parent=MsG0380013058.01.T01
Chr3 CDS 29661507 29661773 29661507 ID=MsG0380013058.01.T01:cds;Parent=MsG0380013058.01.T01
Chr3 three_prime_UTR 29661395 29661506 29661395 ID=MsG0380013058.01.T01:three_prime_utr;Parent=MsG0380013058.01.T01
Gene Sequence

>MsG0380013058.01.T01

ATGAAAAATTGCATTGCGATATTTCCTTCCTTTGCTAGTCTTTCATCTCTAACAAGTCTTAAATTAACTAGAATCTTAGTTATTTGTTTCGATCGGAATAGACATTTAACACTTAAATTCCCAGTTCTCAGATCACTTGAGATAGAAGGAGGACGCACATGGTCAATTATAAAGAGTGTTACTTTTCATGTCCCTCTACTTGAAGTTTGTTCAATGGACTATGGTACATGCGTAAGGTCAAATGCTAAACTTAAGATTTGTGCTTCACGTCTTGCAAAGTTTTGTTATACCGGTTCTTTTCAATCAGAGATTATTCTGCTAGAGGCAGTTCACATTGCTTCTGCAAATATTATGCTATATGGTTCAAGTAGGAGGACAGAAGAAACAATGCATTTTGTTAGTAAGCTTTTGAGTATTAATGCAGCAAGTCTAAAGCTTTGTTTGCGTAGTAGGAAGGTACTTGAAAGAGTGAAACTTTCTTTCAATGACATTCCTGACTTTCAAATATTGGGTCATCTGGATCTCGACTTTGCAACCGGCGAATTTTTGTCTGGCATGCTTTCAAGATCACCATGTTTGGAGACTCTGGTTTTGAAGGATTTTTGTGACACACGCCTTAATTCTACGTTTATGCCGGATTGCTTTTTATTTACCCTTAAAGTAGTAAAATTTGAAAGATTTGCTGGTACTAAACATGAGTTAAATTTCGCTAAATTGGTGATGAATAATGCTCAAGCCTTGGAGAGGATTACTTTCTCGTGTTGTCCTAAGTTGTTGGGCCAGAAGAAATGGGAAAATGTTAAAGACAATATCTCTTCATTCAAATCTACGTTTAGTTCAGTAGTTATAGAATTTTTATCTTAG
Protein sequence

>MsG0380013058.01.T01

MKNCIAIFPSFASLSSLTSLKLTRILVICFDRNRHLTLKFPVLRSLEIEGGRTWSIIKSVTFHVPLLEVCSMDYGTCVRSNAKLKICASRLAKFCYTGSFQSEIILLEAVHIASANIMLYGSSRRTEETMHFVSKLLSINAASLKLCLRSRKVLERVKLSFNDIPDFQILGHLDLDFATGEFLSGMLSRSPCLETLVLKDFCDTRLNSTFMPDCFLFTLKVVKFERFAGTKHELNFAKLVMNNAQALERITFSCCPKLLGQKKWENVKDNISSFKSTFSSVVIEFLS*