AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015720.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015720.01.T01 MTR_3g075240 92.178 652 14 3 1 615 1 652 0.0 1191
MsG0380015720.01.T01 MTR_3g075240 90.226 532 15 3 1 495 1 532 0.0 858
MsG0380015720.01.T01 MTR_3g075240 87.532 385 11 3 1 348 1 385 0.0 568
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015720.01.T01 AT5G63200 60.828 628 208 4 18 613 24 645 0.0 711
MsG0380015720.01.T01 AT5G63200 58.917 628 204 5 18 613 24 629 0.0 670

Find 157 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTATGCATTTGCTATTAC+TGG 0.169530 3:-74180260 MsG0380015720.01.T01:CDS
AGGTAAATTGTTGAACAAAT+TGG 0.186698 3:-74182144 MsG0380015720.01.T01:CDS
ATGGAAAATCAGCCCATATT+TGG 0.232379 3:-74180292 MsG0380015720.01.T01:CDS
AGGCAAGATTTGCCCAAATA+TGG 0.241338 3:+74180279 None:intergenic
GGTAAATTGTTGAACAAATT+GGG 0.242481 3:-74182143 MsG0380015720.01.T01:CDS
TTCGTTGCTATTGGTGTCTT+TGG 0.243928 3:+74182172 None:intergenic
ACATGCTATACTATCCAATA+TGG 0.254925 3:-74179005 MsG0380015720.01.T01:CDS
CTGATGAACTTTCTATTATC+AGG 0.262072 3:+74181396 None:intergenic
ATACAAACGGGCTTTGTCTT+TGG 0.278428 3:-74179044 MsG0380015720.01.T01:CDS
TCTTCGTCGTCATCGGCTTC+AGG 0.284486 3:+74183331 None:intergenic
TGAATCACCATCTCTTATTA+TGG 0.288105 3:+74179762 None:intergenic
GAGGAAACAATTCGCTGTTT+TGG 0.288498 3:-74183374 MsG0380015720.01.T01:CDS
AATTGCCTTCAGTGGAGATT+TGG 0.290767 3:-74180645 MsG0380015720.01.T01:intron
ACCTTCAGCTTCGTTGCTAT+TGG 0.292512 3:+74182163 None:intergenic
AGCCAAGTCTAACTTGATTA+AGG 0.308789 3:-74178795 MsG0380015720.01.T01:CDS
TTGTTGCCAGGCAGCAAAAC+TGG 0.318733 3:-74179896 MsG0380015720.01.T01:intron
TGCTCCTGCATTCAACAATC+TGG 0.324831 3:-74178903 MsG0380015720.01.T01:CDS
TATGATTGCCTTGGTAATCT+TGG 0.327367 3:-74181049 MsG0380015720.01.T01:CDS
GTGCTTTGAAAATGAGCAAT+TGG 0.328865 3:-74178577 MsG0380015720.01.T01:three_prime_UTR
AATCAACGCAATCGGATATC+AGG 0.341521 3:-74181310 MsG0380015720.01.T01:CDS
GCCTTCACAGTCTTTGTGCC+AGG 0.342048 3:-74179367 MsG0380015720.01.T01:CDS
CCATTTGAACTTACATTTGA+AGG 0.365538 3:+74181017 None:intergenic
AGTGAATTGCTTTCGTCTGC+TGG 0.367442 3:-74179799 MsG0380015720.01.T01:CDS
CATTTCAACTCGAGTCAGTT+AGG 0.368982 3:+74183438 None:intergenic
AGCAATAAATTACCTGCTTT+AGG 0.373226 3:+74179611 None:intergenic
GCAAGCCCGGCCCAAGCTAT+TGG 0.379294 3:+74179724 None:intergenic
AGAATCCGTCTTGCTAGGTT+TGG 0.381752 3:+74182109 None:intergenic
CGTTGCTAGCCATCGAATAA+AGG 0.384491 3:-74179845 MsG0380015720.01.T01:CDS
TGGAAAATCAGCCCATATTT+GGG 0.385543 3:-74180291 MsG0380015720.01.T01:CDS
TATCGAGCAGACATGCAATT+AGG 0.390161 3:+74179871 None:intergenic
TCAAAACCATCCTGCAGCTT+TGG 0.391132 3:-74180582 MsG0380015720.01.T01:CDS
ATAAATTACCTGCTTTAGGC+TGG 0.405602 3:+74179615 None:intergenic
CTAACTGACTCGAGTTGAAA+TGG 0.406455 3:-74183437 MsG0380015720.01.T01:exon
GGCCAGAGGTTGAGATTGAT+AGG 0.407562 3:-74181535 MsG0380015720.01.T01:CDS
TGCTTTCTCAAAACAATACT+TGG 0.410693 3:+74178844 None:intergenic
CTTCGTCGTCATCGGCTTCA+GGG 0.410958 3:+74183332 None:intergenic
GCGATAGAGAATTCCCATAT+TGG 0.414575 3:+74178991 None:intergenic
ATGATTGCCTTGGTAATCTT+GGG 0.414967 3:-74181048 MsG0380015720.01.T01:CDS
AGTTGAAATGGCTGAGAAGT+TGG 0.416552 3:-74183425 MsG0380015720.01.T01:exon
TCGAATTTCCAGCAAGTGCT+TGG 0.422363 3:-74180231 MsG0380015720.01.T01:CDS
TGCCACTGAACTGCATCATC+TGG 0.425008 3:+74179398 None:intergenic
GTTTGAAATCAAAGAGGAAC+GGG 0.425232 3:-74178616 MsG0380015720.01.T01:three_prime_UTR
GAGCTTCCAATAGCTTGGGC+CGG 0.434057 3:-74179730 MsG0380015720.01.T01:CDS
TGGTTGAGCTTCCAATAGCT+TGG 0.439259 3:-74179735 MsG0380015720.01.T01:CDS
CCTATGCATTTGCTATTACT+GGG 0.443329 3:-74180259 MsG0380015720.01.T01:CDS
CTTGTGGACCATTGCAAGCC+CGG 0.452199 3:+74179711 None:intergenic
TTCCAGCAAGTGCTTGGAAA+AGG 0.452640 3:-74180225 MsG0380015720.01.T01:intron
GGTTGAGCTTCCAATAGCTT+GGG 0.461056 3:-74179734 MsG0380015720.01.T01:CDS
CTTAGCAACATTAGCAGCCA+TGG 0.461461 3:+74180343 None:intergenic
GCCCTATCAATCTCAACCTC+TGG 0.462898 3:+74181533 None:intergenic
GGTTCAGAAGAGAGGTCAGC+AGG 0.463431 3:-74183403 MsG0380015720.01.T01:CDS
CATCCAGCATTGAATCTGAT+TGG 0.463555 3:+74178819 None:intergenic
GTTGAAATGGCTGAGAAGTT+GGG 0.466425 3:-74183424 MsG0380015720.01.T01:exon
GATGGTGATCCACATGTTCA+AGG 0.468474 3:-74182062 MsG0380015720.01.T01:CDS
GCTGCTGTTGCCTGTGACAA+GGG 0.471686 3:-74179314 MsG0380015720.01.T01:CDS
AGCTTCCAATAGCTTGGGCC+GGG 0.472014 3:-74179729 MsG0380015720.01.T01:CDS
CACAGGCAACAGCAGCTTTG+AGG 0.473023 3:+74179321 None:intergenic
CTCTGGTGCAATGGCTAACA+AGG 0.477527 3:+74181075 None:intergenic
ATTGTCGTCTTCGTCGTCAT+CGG 0.481606 3:+74183324 None:intergenic
TCTTAAAACTGGCCGTGTGC+AGG 0.483852 3:-74181252 MsG0380015720.01.T01:intron
TTAGCTGCAGTTAAAGCAGA+TGG 0.490121 3:-74180311 MsG0380015720.01.T01:CDS
AGCAGCATACGAAAGTGAAC+AGG 0.492446 3:-74179671 MsG0380015720.01.T01:CDS
TTTCTGCCTCCTTTATTCGA+TGG 0.493557 3:+74179836 None:intergenic
CCAAGGCAATCATAGTTCTC+TGG 0.493751 3:+74181058 None:intergenic
AAGCTATTGGAAGCTCAACC+AGG 0.494761 3:+74179737 None:intergenic
TGCTTTGAAAATGAGCAATT+GGG 0.495781 3:-74178576 MsG0380015720.01.T01:three_prime_UTR
GGCAAGATTTGCCCAAATAT+GGG 0.501539 3:+74180280 None:intergenic
ATGAAGGAACGGCAGAAGAA+AGG 0.501907 3:+74178702 None:intergenic
GATTTGATTATTCTAAATGA+AGG 0.504022 3:+74178686 None:intergenic
ACTGAAAGAATCAACGCAAT+CGG 0.504512 3:-74181318 MsG0380015720.01.T01:CDS
ATATCAGGCAGGCAGCTGTA+TGG 0.504895 3:-74181295 MsG0380015720.01.T01:CDS
AAGTCACTTGAACTTCAGCC+TGG 0.506218 3:-74178929 MsG0380015720.01.T01:CDS
CCTTCACAGTCTTTGTGCCA+GGG 0.508302 3:-74179366 MsG0380015720.01.T01:CDS
TGCTGTTTCCAGCCTAAAGC+AGG 0.510009 3:-74179623 MsG0380015720.01.T01:intron
CATGCTATACTATCCAATAT+GGG 0.512664 3:-74179004 MsG0380015720.01.T01:CDS
ATAGAAGAATCCGTCTTGCT+AGG 0.514510 3:+74182104 None:intergenic
TTGAATGCAGGAGCATATCC+AGG 0.515164 3:+74178911 None:intergenic
AAGCTGAAGAAGTATACAAA+CGG 0.516822 3:-74179057 MsG0380015720.01.T01:CDS
ATATCTCATGCTGAGCCTTG+TGG 0.521865 3:+74179695 None:intergenic
GCTGGTGCAAATGCTGCTGA+TGG 0.522835 3:-74180383 MsG0380015720.01.T01:CDS
GGCTATATTGGCTTATGAGA+AGG 0.523725 3:-74181576 MsG0380015720.01.T01:CDS
AGCTGAAGAAGTATACAAAC+GGG 0.524553 3:-74179056 MsG0380015720.01.T01:CDS
AGAGGTCAGCAGGGATGAAG+AGG 0.525738 3:-74183393 MsG0380015720.01.T01:CDS
AGCTGCTGTTGCCTGTGACA+AGG 0.533743 3:-74179315 MsG0380015720.01.T01:CDS
AGTTCAGATTCACCATGCAC+AGG 0.536112 3:-74181495 MsG0380015720.01.T01:intron
TTCGTCTGCTGGAAATGAGA+TGG 0.536129 3:-74179788 MsG0380015720.01.T01:CDS
AGCTTGGGCCGGGCTTGCAA+TGG 0.536432 3:-74179719 MsG0380015720.01.T01:CDS
GTAAATTGTTGAACAAATTG+GGG 0.537086 3:-74182142 MsG0380015720.01.T01:CDS
CATGGCTGCTAATGTTGCTA+AGG 0.538770 3:-74180342 MsG0380015720.01.T01:CDS
GCAGTTCAGTGGCACCAACT+TGG 0.551417 3:-74179389 MsG0380015720.01.T01:CDS
GGTGAATCTGAACTAAAGAA+AGG 0.552889 3:+74181504 None:intergenic
ATGGTGATCCACATGTTCAA+GGG 0.553742 3:-74182061 MsG0380015720.01.T01:CDS
ATCATAGTTCTCTGGTGCAA+TGG 0.556060 3:+74181066 None:intergenic
AGACCCAGATTGTTGAATGC+AGG 0.558965 3:+74178899 None:intergenic
TTTGCATATCTTCGACATTG+TGG 0.559936 3:+74178769 None:intergenic
CCAGAGAACTATGATTGCCT+TGG 0.561944 3:-74181058 MsG0380015720.01.T01:CDS
GCTCCTGCATTCAACAATCT+GGG 0.562852 3:-74178902 MsG0380015720.01.T01:CDS
TTCAAGTGACTTTGTAAACA+TGG 0.562873 3:+74178940 None:intergenic
AACCTTAATCAAGTTAGACT+TGG 0.563544 3:+74178793 None:intergenic
GCATAATTGACCAAAGCTGC+AGG 0.564348 3:+74180572 None:intergenic
ACTTGAACCTCACGAACTTG+AGG 0.565121 3:-74181354 MsG0380015720.01.T01:CDS
CTTTAAGAGTGCATGAGGAA+AGG 0.565441 3:+74178744 None:intergenic
ATCATCTGGATCTTCCGCTA+TGG 0.567531 3:+74179412 None:intergenic
AAAGACTGTGAAGGCCAAGT+TGG 0.570167 3:+74179375 None:intergenic
TTCGTCGTCATCGGCTTCAG+GGG 0.570497 3:+74183333 None:intergenic
ATAGCTGCAACCCTTGTCAC+AGG 0.572931 3:+74179304 None:intergenic
CGGGCTTGCAATGGTCCACA+AGG 0.573827 3:-74179710 MsG0380015720.01.T01:CDS
AACGCAATCGGATATCAGGC+AGG 0.576139 3:-74181306 MsG0380015720.01.T01:CDS
TTCAAGGGGCTCCTTCAGCA+AGG 0.576341 3:-74182046 MsG0380015720.01.T01:CDS
TGCAGAGGGTCTGTTAGAAG+AGG 0.580781 3:-74178867 MsG0380015720.01.T01:CDS
AAGTGAACAGGACGGGCTGA+AGG 0.584652 3:-74179659 MsG0380015720.01.T01:CDS
CCGTCTTGCTAGGTTTGGAA+CGG 0.585221 3:+74182114 None:intergenic
AAGAGATGGTGATTCATCCC+TGG 0.585366 3:-74179755 MsG0380015720.01.T01:CDS
CAAGGATGACAAAACTGAGA+TGG 0.588895 3:+74181093 None:intergenic
GGCAGCTGTATGGAATACAC+TGG 0.590135 3:-74181285 MsG0380015720.01.T01:CDS
GATTATTCTAAATGAAGGAA+CGG 0.592068 3:+74178691 None:intergenic
AGAATTTCCTCAAGTTCGTG+AGG 0.592255 3:+74181347 None:intergenic
CACCACATACTGAAATCACC+AGG 0.593600 3:-74183279 MsG0380015720.01.T01:intron
TGCTTCAGCAGAACAATCCA+TGG 0.596840 3:-74180360 MsG0380015720.01.T01:CDS
GCCAGAGGTTGAGATTGATA+GGG 0.602698 3:-74181534 MsG0380015720.01.T01:CDS
TATTGACTGTGGAGCTGATG+CGG 0.604464 3:-74182084 MsG0380015720.01.T01:CDS
TCATTCTTTAAGAGTGCATG+AGG 0.604832 3:+74178739 None:intergenic
TATATAGTTTGAAATCAAAG+AGG 0.606408 3:-74178622 MsG0380015720.01.T01:three_prime_UTR
AGTTTGAAATCAAAGAGGAA+CGG 0.606528 3:-74178617 MsG0380015720.01.T01:three_prime_UTR
GAAGGAGCCCCTTGAACATG+TGG 0.610791 3:+74182053 None:intergenic
CATACGAAAGTGAACAGGAC+GGG 0.613115 3:-74179666 MsG0380015720.01.T01:CDS
AATTGACCAAAGCTGCAGGA+TGG 0.616871 3:+74180576 None:intergenic
GTTCAGAAGAGAGGTCAGCA+GGG 0.617646 3:-74183402 MsG0380015720.01.T01:CDS
AAGATTATCATACCTGTGCA+TGG 0.619115 3:+74181483 None:intergenic
AGAAGTTGGGTTCAGAAGAG+AGG 0.621301 3:-74183411 MsG0380015720.01.T01:CDS
ATGGCTTCCATAATAAGAGA+TGG 0.622030 3:-74179769 MsG0380015720.01.T01:CDS
ACTCCAATCAGATTCAATGC+TGG 0.622689 3:-74178822 MsG0380015720.01.T01:CDS
ATCCAGATGATGCAGTTCAG+TGG 0.625338 3:-74179400 MsG0380015720.01.T01:CDS
CTTTATTCGATGGCTAGCAA+CGG 0.626635 3:+74179846 None:intergenic
ACAAGGGTTGCAGCTATGCA+TGG 0.627371 3:-74179298 MsG0380015720.01.T01:CDS
CCCAGTAATAGCAAATGCAT+AGG 0.627469 3:+74180259 None:intergenic
ACCAATAGCAACGAAGCTGA+AGG 0.632759 3:-74182164 MsG0380015720.01.T01:CDS
CCCTGGCACAAAGACTGTGA+AGG 0.636813 3:+74179366 None:intergenic
GACTGTGGAGCTGATGCGGA+TGG 0.637090 3:-74182080 MsG0380015720.01.T01:CDS
TGGTGATCCACATGTTCAAG+GGG 0.640055 3:-74182060 MsG0380015720.01.T01:CDS
ACGGATTCTTCTATTGACTG+TGG 0.641658 3:-74182095 MsG0380015720.01.T01:CDS
TCGTCGTCATCGGCTTCAGG+GGG 0.644071 3:+74183334 None:intergenic
AGAGATATTACTCAGGCCAG+AGG 0.645910 3:-74181549 MsG0380015720.01.T01:CDS
GCAGACGAAAGCAATTCACT+AGG 0.646897 3:+74179802 None:intergenic
AGGCAGAAGAGATATTACTC+AGG 0.648663 3:-74181556 MsG0380015720.01.T01:CDS
CCGTTCCAAACCTAGCAAGA+CGG 0.649704 3:-74182114 MsG0380015720.01.T01:CDS
TACCTGGTGATTTCAGTATG+TGG 0.650560 3:+74183277 None:intergenic
TGCTAGCCATCGAATAAAGG+AGG 0.650686 3:-74179842 MsG0380015720.01.T01:CDS
AGCTATTGGAAGCTCAACCA+GGG 0.654408 3:+74179738 None:intergenic
AGCTATGCATGGTCTAACCT+CGG 0.657652 3:-74179287 MsG0380015720.01.T01:intron
TCAAGGGGCTCCTTCAGCAA+GGG 0.663459 3:-74182045 MsG0380015720.01.T01:CDS
AAGGTGCATGTACCTGCACA+CGG 0.677017 3:+74181240 None:intergenic
CTGGTGATTTCAGTATGTGG+TGG 0.680891 3:+74183280 None:intergenic
GCAGCTGTATGGAATACACT+GGG 0.681640 3:-74181284 MsG0380015720.01.T01:CDS
AAGCTATCCCAAGATTACCA+AGG 0.702190 3:+74181041 None:intergenic
GCATACGAAAGTGAACAGGA+CGG 0.707663 3:-74179667 MsG0380015720.01.T01:CDS
TTAGAATAATCAAATCAGAG+AGG 0.732058 3:-74178679 MsG0380015720.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTATTTTATATATAAAAG+AGG + Chr3:74181009-74181028 None:intergenic 10.0%
!!! TAATTTTTGAATTAACATAT+AGG - Chr3:74179759-74179778 MsG0380015720.01.T01:CDS 10.0%
!! AATAAGTAAAATGATATACT+TGG - Chr3:74181022-74181041 MsG0380015720.01.T01:intron 15.0%
!! AATTAAAACCACAAAAATAT+CGG + Chr3:74181272-74181291 None:intergenic 15.0%
!! ATAAGTAAAATGATATACTT+GGG - Chr3:74181023-74181042 MsG0380015720.01.T01:intron 15.0%
!!! ATTTCAAGTGATATATTTTT+CGG - Chr3:74179487-74179506 MsG0380015720.01.T01:intron 15.0%
!!! ATTTTACATGTATTACATTT+TGG - Chr3:74181968-74181987 MsG0380015720.01.T01:intron 15.0%
!!! TTGAAGAAAATTTTGTAATA+TGG - Chr3:74181553-74181572 MsG0380015720.01.T01:CDS 15.0%
!! AATAAAAAGAAAAAGATACC+TGG + Chr3:74178736-74178755 None:intergenic 20.0%
!! AATAGTATTACACAGAAAAA+AGG + Chr3:74181227-74181246 None:intergenic 20.0%
!! CATTTATAGTGTATTTATTG+AGG - Chr3:74181815-74181834 MsG0380015720.01.T01:intron 20.0%
!! GATTAATAGAGTTTAAAAGT+GGG + Chr3:74180051-74180070 None:intergenic 20.0%
!! GATTTGATTATTCTAAATGA+AGG + Chr3:74183311-74183330 None:intergenic 20.0%
!! GTAATTTATTGCTTTCTTAT+AGG - Chr3:74182393-74182412 MsG0380015720.01.T01:intron 20.0%
!! TAATTAACTAACAGAATTAC+TGG - Chr3:74178880-74178899 MsG0380015720.01.T01:CDS 20.0%
!! TGATTAATAGAGTTTAAAAG+TGG + Chr3:74180052-74180071 None:intergenic 20.0%
!! TGTAATTTCATTGAAGATAT+TGG - Chr3:74179434-74179453 MsG0380015720.01.T01:intron 20.0%
!! TTCGTAATAATTTGAGAAAA+TGG - Chr3:74178953-74178972 MsG0380015720.01.T01:CDS 20.0%
!! TTTAAAAAAGATTTGCACAA+TGG - Chr3:74179121-74179140 MsG0380015720.01.T01:intron 20.0%
!!! AATTCTGAATATCTTTTTGT+TGG - Chr3:74179714-74179733 MsG0380015720.01.T01:CDS 20.0%
!!! TATATAGTTTGAAATCAAAG+AGG - Chr3:74183372-74183391 MsG0380015720.01.T01:CDS 20.0%
! AAATTAGCAAGTGTATACTT+AGG + Chr3:74182464-74182483 None:intergenic 25.0%
! ACAAAACTAGGTATAATTGT+AGG - Chr3:74180229-74180248 MsG0380015720.01.T01:CDS 25.0%
! ACTATAAATGATTGTAGCAA+GGG + Chr3:74181805-74181824 None:intergenic 25.0%
! AGGTAAATTGTTGAACAAAT+TGG - Chr3:74179850-74179869 MsG0380015720.01.T01:CDS 25.0%
! AGTTAATTATGAGTTACTTC+AGG + Chr3:74178869-74178888 None:intergenic 25.0%
! ATACTATAGCACATTTACAA+AGG + Chr3:74179567-74179586 None:intergenic 25.0%
! ATTCGTGATTTATGCTATTA+CGG + Chr3:74179192-74179211 None:intergenic 25.0%
! CAAAAAAATCCAAAACAAAC+GGG + Chr3:74178992-74179011 None:intergenic 25.0%
! CAAAACTAGGTATAATTGTA+GGG - Chr3:74180230-74180249 MsG0380015720.01.T01:CDS 25.0%
! CCAAAAAAATCCAAAACAAA+CGG + Chr3:74178993-74179012 None:intergenic 25.0%
! GAAAAAATATGAACTTGCAA+AGG - Chr3:74183031-74183050 MsG0380015720.01.T01:intron 25.0%
! GATTATTCTAAATGAAGGAA+CGG + Chr3:74183306-74183325 None:intergenic 25.0%
! GGTAAATTGTTGAACAAATT+GGG - Chr3:74179851-74179870 MsG0380015720.01.T01:CDS 25.0%
! GTAAATTGTTGAACAAATTG+GGG - Chr3:74179852-74179871 MsG0380015720.01.T01:CDS 25.0%
! GTTTGAATATTTCTTAGAAC+AGG + Chr3:74181205-74181224 None:intergenic 25.0%
! TATTTATTGAGGTTGTTCAT+TGG - Chr3:74181826-74181845 MsG0380015720.01.T01:intron 25.0%
! TCATATTAAAGGACAAATCA+AGG + Chr3:74181522-74181541 None:intergenic 25.0%
! TCGCTACATAATCATATTAA+AGG + Chr3:74181533-74181552 None:intergenic 25.0%
! TGCATATGTTACAAACTAAA+GGG + Chr3:74181088-74181107 None:intergenic 25.0%
! TGGGTTAAAAATGTATGAAT+AGG - Chr3:74182882-74182901 MsG0380015720.01.T01:intron 25.0%
! TTAGAATAATCAAATCAGAG+AGG - Chr3:74183315-74183334 MsG0380015720.01.T01:CDS 25.0%
! TTGCATATGTTACAAACTAA+AGG + Chr3:74181089-74181108 None:intergenic 25.0%
!! ATGGTTTTCATTTTGTCATA+TGG - Chr3:74181572-74181591 MsG0380015720.01.T01:CDS 25.0%
!! TGTATCATTCTTTTTCTACT+AGG - Chr3:74182559-74182578 MsG0380015720.01.T01:intron 25.0%
!!! AAGATGGGTTAATAAAAACA+AGG + Chr3:74182022-74182041 None:intergenic 25.0%
!!! AGATGGGTTAATAAAAACAA+GGG + Chr3:74182021-74182040 None:intergenic 25.0%
!!! ATTAGGTCATTAACTTTTTC+AGG - Chr3:74180397-74180416 MsG0380015720.01.T01:intron 25.0%
!!! TCAAGCAGATCATTTTTTTT+TGG - Chr3:74181904-74181923 MsG0380015720.01.T01:intron 25.0%
!!! TCATATGGATTTTTAATTCC+AGG - Chr3:74181587-74181606 MsG0380015720.01.T01:intron 25.0%
!!! TTAACTTTTTCAGGCTATAT+TGG - Chr3:74180406-74180425 MsG0380015720.01.T01:intron 25.0%
AAACCTTGGTTATAGCATAA+CGG - Chr3:74179240-74179259 MsG0380015720.01.T01:intron 30.0%
AAAGGGTTATTCACTTCATA+TGG - Chr3:74182862-74182881 MsG0380015720.01.T01:intron 30.0%
AACCAAGTCAAACATTGTAA+TGG - Chr3:74179464-74179483 MsG0380015720.01.T01:intron 30.0%
AACCTTAATCAAGTTAGACT+TGG + Chr3:74183204-74183223 None:intergenic 30.0%
AAGATTAAACCAACCTCAAA+AGG - Chr3:74180322-74180341 MsG0380015720.01.T01:CDS 30.0%
AAGGGTTATTCACTTCATAT+GGG - Chr3:74182863-74182882 MsG0380015720.01.T01:intron 30.0%
ACATGCTATACTATCCAATA+TGG - Chr3:74182989-74183008 MsG0380015720.01.T01:intron 30.0%
AGCAATAAATTACCTGCTTT+AGG + Chr3:74182386-74182405 None:intergenic 30.0%
ATCCATTACAATGTTTGACT+TGG + Chr3:74179469-74179488 None:intergenic 30.0%
ATGTTGTCAAATATCAGCTA+TGG - Chr3:74179310-74179329 MsG0380015720.01.T01:CDS 30.0%
CACTAAATCACAATCTACAT+TGG + Chr3:74182060-74182079 None:intergenic 30.0%
CACTATAAATGATTGTAGCA+AGG + Chr3:74181806-74181825 None:intergenic 30.0%
CATGCTATACTATCCAATAT+GGG - Chr3:74182990-74183009 MsG0380015720.01.T01:intron 30.0%
CCATTTGAACTTACATTTGA+AGG + Chr3:74180980-74180999 None:intergenic 30.0%
CCTTCAAATGTAAGTTCAAA+TGG - Chr3:74180977-74180996 MsG0380015720.01.T01:intron 30.0%
CTATAAATGATTGTAGCAAG+GGG + Chr3:74181804-74181823 None:intergenic 30.0%
CTCAGAAATATGAATGAACT+AGG - Chr3:74178839-74178858 MsG0380015720.01.T01:CDS 30.0%
CTGATGAACTTTCTATTATC+AGG + Chr3:74180601-74180620 None:intergenic 30.0%
CTTGTCTGATGTTAAATGTT+TGG - Chr3:74182498-74182517 MsG0380015720.01.T01:intron 30.0%
GGAAAGTTATGAAAGAGAAA+CGG - Chr3:74179508-74179527 MsG0380015720.01.T01:intron 30.0%
TCTTCCAAATTTACCTGTTA+CGG - Chr3:74180349-74180368 MsG0380015720.01.T01:CDS 30.0%
TGAAGACTGTGAGTTTAATT+TGG - Chr3:74179990-74180009 MsG0380015720.01.T01:intron 30.0%
TGAATCACCATCTCTTATTA+TGG + Chr3:74182235-74182254 None:intergenic 30.0%
TGAGAAAATGGAAGTGATTA+AGG - Chr3:74178965-74178984 MsG0380015720.01.T01:CDS 30.0%
TGCTTTCTCAAAACAATACT+TGG + Chr3:74183153-74183172 None:intergenic 30.0%
TTCAAGTGACTTTGTAAACA+TGG + Chr3:74183057-74183076 None:intergenic 30.0%
TTCTATTATCAGGCACTATA+AGG + Chr3:74180591-74180610 None:intergenic 30.0%
TTTAGTTAGTAACAGTACTG+AGG + Chr3:74181331-74181350 None:intergenic 30.0%
TTTCCATGATTAAAGATAGC+TGG - Chr3:74181933-74181952 MsG0380015720.01.T01:intron 30.0%
! AAAATGAGCATGAGCATTTT+TGG + Chr3:74180282-74180301 None:intergenic 30.0%
! AAATGAGCATGAGCATTTTT+GGG + Chr3:74180281-74180300 None:intergenic 30.0%
! AAGCTGAAGAAGTATACAAA+CGG - Chr3:74182937-74182956 MsG0380015720.01.T01:intron 30.0%
! AGTTTGAAATCAAAGAGGAA+CGG - Chr3:74183377-74183396 MsG0380015720.01.T01:CDS 30.0%
! GTTATAGCATAACGGAATTT+GGG - Chr3:74179248-74179267 MsG0380015720.01.T01:intron 30.0%
! TCGATCGTTATTTAAAACCT+TGG - Chr3:74179226-74179245 MsG0380015720.01.T01:intron 30.0%
! TGAAGTGAATAACCCTTTTA+CGG + Chr3:74182860-74182879 None:intergenic 30.0%
! TTTTACAACTACAAGCTTGT+CGG + Chr3:74179534-74179553 None:intergenic 30.0%
! TTTTATTAACCCATCTTCTG+AGG - Chr3:74182025-74182044 MsG0380015720.01.T01:CDS 30.0%
!! CTGAAGCATTTTTACACAAA+AGG + Chr3:74181454-74181473 None:intergenic 30.0%
!! GAGAAATACCGATATTTTTG+TGG - Chr3:74181261-74181280 MsG0380015720.01.T01:CDS 30.0%
!! GGTTTTATCCTTCTTAAAAC+TGG - Chr3:74180731-74180750 MsG0380015720.01.T01:intron 30.0%
!! TGCTTTGAAAATGAGCAATT+GGG - Chr3:74183418-74183437 MsG0380015720.01.T01:CDS 30.0%
!! TTTGAAGTTTACATTGGTTC+AGG + Chr3:74180866-74180885 None:intergenic 30.0%
!! TTTGAGGTTGGTTTAATCTT+TGG + Chr3:74180322-74180341 None:intergenic 30.0%
!!! AAGGTTTTAAATAACGATCG+AGG + Chr3:74179227-74179246 None:intergenic 30.0%
!!! CAAGTTCATATTTTTTCTGC+TGG + Chr3:74183028-74183047 None:intergenic 30.0%
!!! CCGTTTGTTTTGGATTTTTT+TGG - Chr3:74178990-74179009 MsG0380015720.01.T01:CDS 30.0%
!!! CTAACTGACTAACTAGTTTT+AGG + Chr3:74180134-74180153 None:intergenic 30.0%
AAAAATGCTTCAGTTGTAGC+AGG - Chr3:74181461-74181480 MsG0380015720.01.T01:intron 35.0%
AAAACCTGCTGTCAATTGAA+TGG + Chr3:74179650-74179669 None:intergenic 35.0%
AAGATAGCTATCTGACTATC+TGG + Chr3:74180099-74180118 None:intergenic 35.0%
AAGATTATCATACCTGTGCA+TGG + Chr3:74180514-74180533 None:intergenic 35.0%
ACTAACTAAATTGCCTTCAG+TGG - Chr3:74181341-74181360 MsG0380015720.01.T01:CDS 35.0%
ACTCCAGCTATCTTTAATCA+TGG + Chr3:74181939-74181958 None:intergenic 35.0%
ACTGAAAGAATCAACGCAAT+CGG - Chr3:74180676-74180695 MsG0380015720.01.T01:intron 35.0%
AGCCAAGTCTAACTTGATTA+AGG - Chr3:74183199-74183218 MsG0380015720.01.T01:intron 35.0%
ATGGAAAATCAGCCCATATT+TGG - Chr3:74181702-74181721 MsG0380015720.01.T01:intron 35.0%
ATGGCTTCCATAATAAGAGA+TGG - Chr3:74182225-74182244 MsG0380015720.01.T01:intron 35.0%
ATTATCACCACATGTCACAT+GGG + Chr3:74181120-74181139 None:intergenic 35.0%
ATTCCGTTATGCTATAACCA+AGG + Chr3:74179246-74179265 None:intergenic 35.0%
CTAACCAAAAACAACAACAC+TGG + Chr3:74180203-74180222 None:intergenic 35.0%
CTACATACAGGTTACTCATT+AGG - Chr3:74180380-74180399 MsG0380015720.01.T01:CDS 35.0%
CTAGGTATAATTGTAGGGAT+TGG - Chr3:74180235-74180254 MsG0380015720.01.T01:CDS 35.0%
GCAAGTGTATACTTAGGATA+AGG + Chr3:74182458-74182477 None:intergenic 35.0%
GGTGAATCTGAACTAAAGAA+AGG + Chr3:74180493-74180512 None:intergenic 35.0%
TAATTCCAAATCTCCACTGA+AGG + Chr3:74181357-74181376 None:intergenic 35.0%
TATTACGAAAGTCTACGTGT+CGG + Chr3:74178942-74178961 None:intergenic 35.0%
TCAAAACATTTCCACCAACA+AGG + Chr3:74181861-74181880 None:intergenic 35.0%
TGGAAAATCAGCCCATATTT+GGG - Chr3:74181703-74181722 MsG0380015720.01.T01:intron 35.0%
TGTGTGGAAAAGAGAAAACA+AGG + Chr3:74180776-74180795 None:intergenic 35.0%
TTACACAGTGTTGTCAATTG+TGG + Chr3:74179392-74179411 None:intergenic 35.0%
TTTGCATATCTTCGACATTG+TGG + Chr3:74183228-74183247 None:intergenic 35.0%
! AGCTGAAGAAGTATACAAAC+GGG - Chr3:74182938-74182957 MsG0380015720.01.T01:intron 35.0%
! ATAAATTACCTGCTTTAGGC+TGG + Chr3:74182382-74182401 None:intergenic 35.0%
! ATGATTGCCTTGGTAATCTT+GGG - Chr3:74180946-74180965 MsG0380015720.01.T01:intron 35.0%
! CATGTCTTTTTCCCGTAAAA+GGG - Chr3:74182845-74182864 MsG0380015720.01.T01:intron 35.0%
! GAAGTGAATAACCCTTTTAC+GGG + Chr3:74182859-74182878 None:intergenic 35.0%
! GCTCATGCTCATTTTATACT+TGG - Chr3:74180287-74180306 MsG0380015720.01.T01:CDS 35.0%
! GGTTAGTCAATGACAAAACT+AGG - Chr3:74180217-74180236 MsG0380015720.01.T01:intron 35.0%
! GGTTATAGCATAACGGAATT+TGG - Chr3:74179247-74179266 MsG0380015720.01.T01:intron 35.0%
! GTTTGAAATCAAAGAGGAAC+GGG - Chr3:74183378-74183397 MsG0380015720.01.T01:CDS 35.0%
! TATGATTGCCTTGGTAATCT+TGG - Chr3:74180945-74180964 MsG0380015720.01.T01:intron 35.0%
! TATGTGCTTCTTTTCTCTCT+TGG - Chr3:74182730-74182749 MsG0380015720.01.T01:intron 35.0%
! TCATTCTTTAAGAGTGCATG+AGG + Chr3:74183258-74183277 None:intergenic 35.0%
! TTTGGAAGAACTACCTTTTG+AGG + Chr3:74180338-74180357 None:intergenic 35.0%
! TTTTCTCTCTTGGCTGTAAT+GGG - Chr3:74182740-74182759 MsG0380015720.01.T01:intron 35.0%
!! CCTATGCATTTGCTATTACT+GGG - Chr3:74181735-74181754 MsG0380015720.01.T01:intron 35.0%
!! GTGCTTTGAAAATGAGCAAT+TGG - Chr3:74183417-74183436 MsG0380015720.01.T01:CDS 35.0%
!! GTTTACATTGGTTCAGGAAA+TGG + Chr3:74180860-74180879 None:intergenic 35.0%
!! TAAATGTTTGGTGTCTCTGT+TGG - Chr3:74182510-74182529 MsG0380015720.01.T01:intron 35.0%
!! TTGTGATGTTTTGAATTCCC+TGG + Chr3:74182648-74182667 None:intergenic 35.0%
!!! ATTGCCAGTGTTGTTGTTTT+TGG - Chr3:74180196-74180215 MsG0380015720.01.T01:intron 35.0%
!!! CAGGATGGTTTTGATCTTTT+AGG + Chr3:74181406-74181425 None:intergenic 35.0%
!!! CTGACTAACTAGTTTTAGGT+AGG + Chr3:74180130-74180149 None:intergenic 35.0%
!!! GATCTTTTAGGATCAACTCT+TGG + Chr3:74181394-74181413 None:intergenic 35.0%
!!! GGTCTTGTTTTTATTGCAGA+GGG - Chr3:74183113-74183132 MsG0380015720.01.T01:intron 35.0%
AACACTGTGTAACGAGCATT+TGG - Chr3:74179400-74179419 MsG0380015720.01.T01:CDS 40.0%
AAGCTATCCCAAGATTACCA+AGG + Chr3:74180956-74180975 None:intergenic 40.0%
AATCAACGCAATCGGATATC+AGG - Chr3:74180684-74180703 MsG0380015720.01.T01:intron 40.0%
AATTGCCTTCAGTGGAGATT+TGG - Chr3:74181349-74181368 MsG0380015720.01.T01:CDS 40.0%
ACACTGTGTAACGAGCATTT+GGG - Chr3:74179401-74179420 MsG0380015720.01.T01:CDS 40.0%
ACTCCAATCAGATTCAATGC+TGG - Chr3:74183172-74183191 MsG0380015720.01.T01:intron 40.0%
AGAATTTCCTCAAGTTCGTG+AGG + Chr3:74180650-74180669 None:intergenic 40.0%
AGGCAAGATTTGCCCAAATA+TGG + Chr3:74181718-74181737 None:intergenic 40.0%
AGGCAGAAGAGATATTACTC+AGG - Chr3:74180438-74180457 MsG0380015720.01.T01:intron 40.0%
AGTTGAAATGGCTGAGAAGT+TGG - Chr3:74178569-74178588 MsG0380015720.01.T01:three_prime_UTR 40.0%
AGTTGGCACTTGACAATCAA+AGG + Chr3:74182798-74182817 None:intergenic 40.0%
ATAGAAGAATCCGTCTTGCT+AGG + Chr3:74179893-74179912 None:intergenic 40.0%
ATCATAGTTCTCTGGTGCAA+TGG + Chr3:74180931-74180950 None:intergenic 40.0%
ATGGTGATCCACATGTTCAA+GGG - Chr3:74179933-74179952 MsG0380015720.01.T01:intron 40.0%
ATTCATTCCCATGTGACATG+TGG - Chr3:74181110-74181129 MsG0380015720.01.T01:intron 40.0%
CAAGGATGACAAAACTGAGA+TGG + Chr3:74180904-74180923 None:intergenic 40.0%
CAATCAGTCTAATGTGCCTA+AGG - Chr3:74180070-74180089 MsG0380015720.01.T01:intron 40.0%
CATTATCACCACATGTCACA+TGG + Chr3:74181121-74181140 None:intergenic 40.0%
CATTTCAACTCGAGTCAGTT+AGG + Chr3:74178559-74178578 None:intergenic 40.0%
CCAAAACATCCTCAGAAGAT+GGG + Chr3:74182037-74182056 None:intergenic 40.0%
CCAATGTAAACTTCAAACCC+TGG - Chr3:74180869-74180888 MsG0380015720.01.T01:intron 40.0%
CCCAGTAATAGCAAATGCAT+AGG + Chr3:74181738-74181757 None:intergenic 40.0%
CTTTATTCGATGGCTAGCAA+CGG + Chr3:74182151-74182170 None:intergenic 40.0%
GAGTAACCTGTATGTAGACT+AGG + Chr3:74180377-74180396 None:intergenic 40.0%
GCGATAGAGAATTCCCATAT+TGG + Chr3:74183006-74183025 None:intergenic 40.0%
GGAACCGTAACAGGTAAATT+TGG + Chr3:74180356-74180375 None:intergenic 40.0%
GGCAAGATTTGCCCAAATAT+GGG + Chr3:74181717-74181736 None:intergenic 40.0%
GTGTTGTCAATTGTGGATAG+TGG + Chr3:74179385-74179404 None:intergenic 40.0%
GTTGAAATGGCTGAGAAGTT+GGG - Chr3:74178570-74178589 MsG0380015720.01.T01:three_prime_UTR 40.0%
TACCTGGTGATTTCAGTATG+TGG + Chr3:74178720-74178739 None:intergenic 40.0%
TATCGAGCAGACATGCAATT+AGG + Chr3:74182126-74182145 None:intergenic 40.0%
TCAAAATGCCGGACTAAAGT+TGG + Chr3:74182815-74182834 None:intergenic 40.0%
TTAGAACAGGATCTGCTGTA+TGG + Chr3:74181192-74181211 None:intergenic 40.0%
TTAGCTGCAGTTAAAGCAGA+TGG - Chr3:74181683-74181702 MsG0380015720.01.T01:intron 40.0%
TTGTCCATTCAATTGACAGC+AGG - Chr3:74179643-74179662 MsG0380015720.01.T01:CDS 40.0%
TTTCTGCCTCCTTTATTCGA+TGG + Chr3:74182161-74182180 None:intergenic 40.0%
TTTCTTATAGGTATGTCCCC+AGG - Chr3:74182405-74182424 MsG0380015720.01.T01:intron 40.0%
! ACGGATTCTTCTATTGACTG+TGG - Chr3:74179899-74179918 MsG0380015720.01.T01:intron 40.0%
! ATACAAACGGGCTTTGTCTT+TGG - Chr3:74182950-74182969 MsG0380015720.01.T01:intron 40.0%
! CAGTACTGAGGAAAGACATA+TGG + Chr3:74181319-74181338 None:intergenic 40.0%
! CATCCAGCATTGAATCTGAT+TGG + Chr3:74183178-74183197 None:intergenic 40.0%
! CCAGGGTTTGAAGTTTACAT+TGG + Chr3:74180872-74180891 None:intergenic 40.0%
! CCATGTCTTTTTCCCGTAAA+AGG - Chr3:74182844-74182863 MsG0380015720.01.T01:intron 40.0%
! CCTTTTACGGGAAAAAGACA+TGG + Chr3:74182847-74182866 None:intergenic 40.0%
! CTTTAAGAGTGCATGAGGAA+AGG + Chr3:74183253-74183272 None:intergenic 40.0%
! CTTTTCTCTCTTGGCTGTAA+TGG - Chr3:74182739-74182758 MsG0380015720.01.T01:intron 40.0%
! CTTTTTCTACTAGGCCATAG+CGG - Chr3:74182568-74182587 MsG0380015720.01.T01:intron 40.0%
! GAGGAAACAATTCGCTGTTT+TGG - Chr3:74178620-74178639 MsG0380015720.01.T01:three_prime_UTR 40.0%
! GATTAAGGACCCGTTTGTTT+TGG - Chr3:74178980-74178999 MsG0380015720.01.T01:CDS 40.0%
! TCTGACTATCTGGAATCCTT+AGG + Chr3:74180089-74180108 None:intergenic 40.0%
! TTCGTTGCTATTGGTGTCTT+TGG + Chr3:74179825-74179844 None:intergenic 40.0%
!! ACTTTTTCTTCCCTTGCTGA+AGG + Chr3:74179962-74179981 None:intergenic 40.0%
!! CTAACTGACTCGAGTTGAAA+TGG - Chr3:74178557-74178576 MsG0380015720.01.T01:three_prime_UTR 40.0%
!! GCCTATGCATTTGCTATTAC+TGG - Chr3:74181734-74181753 MsG0380015720.01.T01:intron 40.0%
!! GGATTTTTAATTCCAGGTGC+TGG - Chr3:74181593-74181612 MsG0380015720.01.T01:intron 40.0%
!! GGCTATATTGGCTTATGAGA+AGG - Chr3:74180418-74180437 MsG0380015720.01.T01:intron 40.0%
!!! GAAGAACTACCTTTTGAGGT+TGG + Chr3:74180334-74180353 None:intergenic 40.0%
!!! GGGTCTTGTTTTTATTGCAG+AGG - Chr3:74183112-74183131 MsG0380015720.01.T01:intron 40.0%
AAAGACTGTGAAGGCCAAGT+TGG + Chr3:74182622-74182641 None:intergenic 45.0%
AAGAGATGGTGATTCATCCC+TGG - Chr3:74182239-74182258 MsG0380015720.01.T01:intron 45.0%
AAGCTATTGGAAGCTCAACC+AGG + Chr3:74182260-74182279 None:intergenic 45.0%
AAGTCACTTGAACTTCAGCC+TGG - Chr3:74183065-74183084 MsG0380015720.01.T01:intron 45.0%
AATTGACCAAAGCTGCAGGA+TGG + Chr3:74181421-74181440 None:intergenic 45.0%
ACCAATAGCAACGAAGCTGA+AGG - Chr3:74179830-74179849 MsG0380015720.01.T01:CDS 45.0%
ACCTTCAGCTTCGTTGCTAT+TGG + Chr3:74179834-74179853 None:intergenic 45.0%
ACGGGAAAAAGACATGGAAG+AGG + Chr3:74182841-74182860 None:intergenic 45.0%
ACGGTTCCTAGTCTACATAC+AGG - Chr3:74180368-74180387 MsG0380015720.01.T01:CDS 45.0%
ACTTGAACCTCACGAACTTG+AGG - Chr3:74180640-74180659 MsG0380015720.01.T01:intron 45.0%
AGAAGTTGGGTTCAGAAGAG+AGG - Chr3:74178583-74178602 MsG0380015720.01.T01:three_prime_UTR 45.0%
AGAATCCGTCTTGCTAGGTT+TGG + Chr3:74179888-74179907 None:intergenic 45.0%
AGACCCAGATTGTTGAATGC+AGG + Chr3:74183098-74183117 None:intergenic 45.0%
AGAGATATTACTCAGGCCAG+AGG - Chr3:74180445-74180464 MsG0380015720.01.T01:intron 45.0%
AGCAGCATACGAAAGTGAAC+AGG - Chr3:74182323-74182342 MsG0380015720.01.T01:intron 45.0%
AGCTATGCATGGTCTAACCT+CGG - Chr3:74182707-74182726 MsG0380015720.01.T01:intron 45.0%
AGCTATTGGAAGCTCAACCA+GGG + Chr3:74182259-74182278 None:intergenic 45.0%
AGTGAATTGCTTTCGTCTGC+TGG - Chr3:74182195-74182214 MsG0380015720.01.T01:CDS 45.0%
AGTTCAGATTCACCATGCAC+AGG - Chr3:74180499-74180518 MsG0380015720.01.T01:intron 45.0%
ATATCTCATGCTGAGCCTTG+TGG + Chr3:74182302-74182321 None:intergenic 45.0%
ATCATCTGGATCTTCCGCTA+TGG + Chr3:74182585-74182604 None:intergenic 45.0%
ATCCAGATGATGCAGTTCAG+TGG - Chr3:74182594-74182613 MsG0380015720.01.T01:intron 45.0%
ATCTGCTGTATGGTGCATTG+CGG + Chr3:74181182-74181201 None:intergenic 45.0%
ATGAAGGAACGGCAGAAGAA+AGG + Chr3:74183295-74183314 None:intergenic 45.0%
ATTGTCGTCTTCGTCGTCAT+CGG + Chr3:74178673-74178692 None:intergenic 45.0%
CACCACATACTGAAATCACC+AGG - Chr3:74178715-74178734 MsG0380015720.01.T01:three_prime_UTR 45.0%
CATACGAAAGTGAACAGGAC+GGG - Chr3:74182328-74182347 MsG0380015720.01.T01:intron 45.0%
CATGGCTGCTAATGTTGCTA+AGG - Chr3:74181652-74181671 MsG0380015720.01.T01:intron 45.0%
CCAAGGCAATCATAGTTCTC+TGG + Chr3:74180939-74180958 None:intergenic 45.0%
CCAGAGAACTATGATTGCCT+TGG - Chr3:74180936-74180955 MsG0380015720.01.T01:intron 45.0%
CGGGAAAAAGACATGGAAGA+GGG + Chr3:74182840-74182859 None:intergenic 45.0%
CGTTGCTAGCCATCGAATAA+AGG - Chr3:74182149-74182168 MsG0380015720.01.T01:CDS 45.0%
CTGGTGATTTCAGTATGTGG+TGG + Chr3:74178717-74178736 None:intergenic 45.0%
CTTAGCAACATTAGCAGCCA+TGG + Chr3:74181654-74181673 None:intergenic 45.0%
GATGGTGATCCACATGTTCA+AGG - Chr3:74179932-74179951 MsG0380015720.01.T01:intron 45.0%
GCAGACGAAAGCAATTCACT+AGG + Chr3:74182195-74182214 None:intergenic 45.0%
GCAGCTGTATGGAATACACT+GGG - Chr3:74180710-74180729 MsG0380015720.01.T01:intron 45.0%
GCATAATTGACCAAAGCTGC+AGG + Chr3:74181425-74181444 None:intergenic 45.0%
GCATACGAAAGTGAACAGGA+CGG - Chr3:74182327-74182346 MsG0380015720.01.T01:intron 45.0%
GCCAAAACATCCTCAGAAGA+TGG + Chr3:74182038-74182057 None:intergenic 45.0%
GCCAGAGGTTGAGATTGATA+GGG - Chr3:74180460-74180479 MsG0380015720.01.T01:intron 45.0%
GCTCCTGCATTCAACAATCT+GGG - Chr3:74183092-74183111 MsG0380015720.01.T01:intron 45.0%
GGTTGAGCTTCCAATAGCTT+GGG - Chr3:74182260-74182279 MsG0380015720.01.T01:intron 45.0%
GTCAAGTGCCAACTTTAGTC+CGG - Chr3:74182804-74182823 MsG0380015720.01.T01:intron 45.0%
TAACGATCGAGGTCGCATTA+AGG + Chr3:74179216-74179235 None:intergenic 45.0%
TCAAAACCATCCTGCAGCTT+TGG - Chr3:74181412-74181431 MsG0380015720.01.T01:intron 45.0%
TCGAATTTCCAGCAAGTGCT+TGG - Chr3:74181763-74181782 MsG0380015720.01.T01:intron 45.0%
TGCTAGCCATCGAATAAAGG+AGG - Chr3:74182152-74182171 MsG0380015720.01.T01:CDS 45.0%
TGCTCCTGCATTCAACAATC+TGG - Chr3:74183091-74183110 MsG0380015720.01.T01:intron 45.0%
TGCTTCAGCAGAACAATCCA+TGG - Chr3:74181634-74181653 MsG0380015720.01.T01:intron 45.0%
TGGTGATCCACATGTTCAAG+GGG - Chr3:74179934-74179953 MsG0380015720.01.T01:intron 45.0%
TGGTTGAGCTTCCAATAGCT+TGG - Chr3:74182259-74182278 MsG0380015720.01.T01:intron 45.0%
TGTAGACTAGGAACCGTAAC+AGG + Chr3:74180365-74180384 None:intergenic 45.0%
TTCCAGCAAGTGCTTGGAAA+AGG - Chr3:74181769-74181788 MsG0380015720.01.T01:intron 45.0%
TTCGTCTGCTGGAAATGAGA+TGG - Chr3:74182206-74182225 MsG0380015720.01.T01:CDS 45.0%
! ATTGGTTTCCTGGTCCTTGT+TGG - Chr3:74181844-74181863 MsG0380015720.01.T01:intron 45.0%
! GAGAAAAGAAGCACATACCG+AGG + Chr3:74182727-74182746 None:intergenic 45.0%
! TATTGACTGTGGAGCTGATG+CGG - Chr3:74179910-74179929 MsG0380015720.01.T01:intron 45.0%
! TGTGAGAGCTTTCAAGTGTG+TGG + Chr3:74180792-74180811 None:intergenic 45.0%
! TTGAATGCAGGAGCATATCC+AGG + Chr3:74183086-74183105 None:intergenic 45.0%
! TTTTCCTTCCCTTTGTTGCC+AGG - Chr3:74182086-74182105 MsG0380015720.01.T01:CDS 45.0%
! TTTTGCTGCCTGGCAACAAA+GGG + Chr3:74182097-74182116 None:intergenic 45.0%
!! CAATGTTTGACTTGGTTGCG+AGG + Chr3:74179461-74179480 None:intergenic 45.0%
!! CCCATCTTCTGAGGATGTTT+TGG - Chr3:74182034-74182053 MsG0380015720.01.T01:CDS 45.0%
!! GAGGTTGTTCATTGGTTTCC+TGG - Chr3:74181834-74181853 MsG0380015720.01.T01:intron 45.0%
AACGCAATCGGATATCAGGC+AGG - Chr3:74180688-74180707 MsG0380015720.01.T01:intron 50.0%
AAGGTGCATGTACCTGCACA+CGG + Chr3:74180757-74180776 None:intergenic 50.0%
ACAAGGGTTGCAGCTATGCA+TGG - Chr3:74182696-74182715 MsG0380015720.01.T01:intron 50.0%
ATAGCTGCAACCCTTGTCAC+AGG + Chr3:74182693-74182712 None:intergenic 50.0%
ATAGGTATGTCCCCAGGTTG+AGG - Chr3:74182411-74182430 MsG0380015720.01.T01:intron 50.0%
ATATCAGGCAGGCAGCTGTA+TGG - Chr3:74180699-74180718 MsG0380015720.01.T01:intron 50.0%
CATTTCCACCAACAAGGACC+AGG + Chr3:74181855-74181874 None:intergenic 50.0%
CCGTCTTGCTAGGTTTGGAA+CGG + Chr3:74179883-74179902 None:intergenic 50.0%
CCGTTCCAAACCTAGCAAGA+CGG - Chr3:74179880-74179899 MsG0380015720.01.T01:CDS 50.0%
CCTTCACAGTCTTTGTGCCA+GGG - Chr3:74182628-74182647 MsG0380015720.01.T01:intron 50.0%
CTCTGGTGCAATGGCTAACA+AGG + Chr3:74180922-74180941 None:intergenic 50.0%
GCCCTATCAATCTCAACCTC+TGG + Chr3:74180464-74180483 None:intergenic 50.0%
GGAAGAGGGAGTCAAAATGC+CGG + Chr3:74182826-74182845 None:intergenic 50.0%
GGCAGCTGTATGGAATACAC+TGG - Chr3:74180709-74180728 MsG0380015720.01.T01:intron 50.0%
GGCCAGAGGTTGAGATTGAT+AGG - Chr3:74180459-74180478 MsG0380015720.01.T01:intron 50.0%
GTTCAGAAGAGAGGTCAGCA+GGG - Chr3:74178592-74178611 MsG0380015720.01.T01:three_prime_UTR 50.0%
TCTGCTGTATGGTGCATTGC+GGG + Chr3:74181181-74181200 None:intergenic 50.0%
TCTTAAAACTGGCCGTGTGC+AGG - Chr3:74180742-74180761 MsG0380015720.01.T01:intron 50.0%
TGAGATGGCACTCTACACCA+GGG + Chr3:74180889-74180908 None:intergenic 50.0%
TGCAGAGGGTCTGTTAGAAG+AGG - Chr3:74183127-74183146 MsG0380015720.01.T01:intron 50.0%
TGCCACTGAACTGCATCATC+TGG + Chr3:74182599-74182618 None:intergenic 50.0%
TTCCATCTGCACCTCAACCT+GGG + Chr3:74182425-74182444 None:intergenic 50.0%
TTGTTGCCAGGCAGCAAAAC+TGG - Chr3:74182098-74182117 MsG0380015720.01.T01:CDS 50.0%
TTTCCATCTGCACCTCAACC+TGG + Chr3:74182426-74182445 None:intergenic 50.0%
! CACCTTTTCCAAGCACTTGC+TGG + Chr3:74181774-74181793 None:intergenic 50.0%
! CTACGTGTCGGTATCGAGTT+CGG + Chr3:74178930-74178949 None:intergenic 50.0%
! GTTTTGCTGCCTGGCAACAA+AGG + Chr3:74182098-74182117 None:intergenic 50.0%
! TAGGTTCCAGTTTTGCTGCC+TGG + Chr3:74182107-74182126 None:intergenic 50.0%
!! AGGGATTGGTTCATGTTGCG+AGG - Chr3:74180249-74180268 MsG0380015720.01.T01:CDS 50.0%
!! GTGCTTGGAAAAGGTGCTCA+TGG - Chr3:74181778-74181797 MsG0380015720.01.T01:intron 50.0%
!! TGCTGTTTCCAGCCTAAAGC+AGG - Chr3:74182371-74182390 MsG0380015720.01.T01:intron 50.0%
!!! GCACACGGCCAGTTTTAAGA+AGG + Chr3:74180742-74180761 None:intergenic 50.0%
AGAGGTCAGCAGGGATGAAG+AGG - Chr3:74178601-74178620 MsG0380015720.01.T01:three_prime_UTR 55.0%
AGCTGCTGTTGCCTGTGACA+AGG - Chr3:74182679-74182698 MsG0380015720.01.T01:intron 55.0%
AGCTTCCAATAGCTTGGGCC+GGG - Chr3:74182265-74182284 MsG0380015720.01.T01:intron 55.0%
CACAGGCAACAGCAGCTTTG+AGG + Chr3:74182676-74182695 None:intergenic 55.0%
CCCTGGCACAAAGACTGTGA+AGG + Chr3:74182631-74182650 None:intergenic 55.0%
CTGAGATGGCACTCTACACC+AGG + Chr3:74180890-74180909 None:intergenic 55.0%
CTTCAGGGGGATCGATGTTG+AGG + Chr3:74178650-74178669 None:intergenic 55.0%
CTTGTGGACCATTGCAAGCC+CGG + Chr3:74182286-74182305 None:intergenic 55.0%
GAAGGAGCCCCTTGAACATG+TGG + Chr3:74179944-74179963 None:intergenic 55.0%
GAGCTTCCAATAGCTTGGGC+CGG - Chr3:74182264-74182283 MsG0380015720.01.T01:intron 55.0%
GCAGTTCAGTGGCACCAACT+TGG - Chr3:74182605-74182624 MsG0380015720.01.T01:intron 55.0%
GCCTTCACAGTCTTTGTGCC+AGG - Chr3:74182627-74182646 MsG0380015720.01.T01:intron 55.0%
GCTGCTGTTGCCTGTGACAA+GGG - Chr3:74182680-74182699 MsG0380015720.01.T01:intron 55.0%
GCTGGTGCAAATGCTGCTGA+TGG - Chr3:74181611-74181630 MsG0380015720.01.T01:intron 55.0%
GGTTCAGAAGAGAGGTCAGC+AGG - Chr3:74178591-74178610 MsG0380015720.01.T01:three_prime_UTR 55.0%
GGTTTCCTGGTCCTTGTTGG+TGG - Chr3:74181847-74181866 MsG0380015720.01.T01:intron 55.0%
TCAAGGGGCTCCTTCAGCAA+GGG - Chr3:74179949-74179968 MsG0380015720.01.T01:intron 55.0%
TCCATCTGCACCTCAACCTG+GGG + Chr3:74182424-74182443 None:intergenic 55.0%
TTCAAGGGGCTCCTTCAGCA+AGG - Chr3:74179948-74179967 MsG0380015720.01.T01:intron 55.0%
!! AAGTGAACAGGACGGGCTGA+AGG - Chr3:74182335-74182354 MsG0380015720.01.T01:intron 55.0%
!! CTTCGTCGTCATCGGCTTCA+GGG + Chr3:74178665-74178684 None:intergenic 55.0%
!! TCTTCGTCGTCATCGGCTTC+AGG + Chr3:74178666-74178685 None:intergenic 55.0%
!! TTCGTCGTCATCGGCTTCAG+GGG + Chr3:74178664-74178683 None:intergenic 55.0%
CGGGCTTGCAATGGTCCACA+AGG - Chr3:74182284-74182303 MsG0380015720.01.T01:intron 60.0%
GACTGTGGAGCTGATGCGGA+TGG - Chr3:74179914-74179933 MsG0380015720.01.T01:intron 60.0%
GCAGCATTTGCACCAGCACC+TGG + Chr3:74181608-74181627 None:intergenic 60.0%
GCTGCCTGGCAACAAAGGGA+AGG + Chr3:74182093-74182112 None:intergenic 60.0%
! TCCCCAGGTTGAGGTGCAGA+TGG - Chr3:74182420-74182439 MsG0380015720.01.T01:intron 60.0%
!! TCGTCGTCATCGGCTTCAGG+GGG + Chr3:74178663-74178682 None:intergenic 60.0%
AGCTTGGGCCGGGCTTGCAA+TGG - Chr3:74182275-74182294 MsG0380015720.01.T01:intron 65.0%
GCAAGCCCGGCCCAAGCTAT+TGG + Chr3:74182273-74182292 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74178548 74183468 74178548 ID=MsG0380015720.01;Name=MsG0380015720.01
Chr3 mRNA 74178548 74183468 74178548 ID=MsG0380015720.01.T01;Parent=MsG0380015720.01;Name=MsG0380015720.01.T01;_AED=0.47;_eAED=0.47;_QI=28|0.88|1|1|1|1|10|191|615
Chr3 exon 74178548 74179112 74178548 ID=MsG0380015720.01.T01:exon:926;Parent=MsG0380015720.01.T01
Chr3 exon 74179288 74179435 74179288 ID=MsG0380015720.01.T01:exon:925;Parent=MsG0380015720.01.T01
Chr3 exon 74179624 74179908 74179624 ID=MsG0380015720.01.T01:exon:924;Parent=MsG0380015720.01.T01
Chr3 exon 74180226 74180407 74180226 ID=MsG0380015720.01.T01:exon:923;Parent=MsG0380015720.01.T01
Chr3 exon 74180534 74180655 74180534 ID=MsG0380015720.01.T01:exon:922;Parent=MsG0380015720.01.T01
Chr3 exon 74181031 74181119 74181031 ID=MsG0380015720.01.T01:exon:921;Parent=MsG0380015720.01.T01
Chr3 exon 74181253 74181420 74181253 ID=MsG0380015720.01.T01:exon:920;Parent=MsG0380015720.01.T01
Chr3 exon 74181496 74181597 74181496 ID=MsG0380015720.01.T01:exon:919;Parent=MsG0380015720.01.T01
Chr3 exon 74182019 74182235 74182019 ID=MsG0380015720.01.T01:exon:918;Parent=MsG0380015720.01.T01
Chr3 exon 74183280 74183468 74183280 ID=MsG0380015720.01.T01:exon:917;Parent=MsG0380015720.01.T01
Chr3 five_prime_UTR 74183441 74183468 74183441 ID=MsG0380015720.01.T01:five_prime_utr;Parent=MsG0380015720.01.T01
Chr3 CDS 74183280 74183440 74183280 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74182019 74182235 74182019 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74181496 74181597 74181496 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74181253 74181420 74181253 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74181031 74181119 74181031 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74180534 74180655 74180534 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74180226 74180407 74180226 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74179624 74179908 74179624 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74179288 74179435 74179288 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 CDS 74178739 74179112 74178739 ID=MsG0380015720.01.T01:cds;Parent=MsG0380015720.01.T01
Chr3 three_prime_UTR 74178548 74178738 74178548 ID=MsG0380015720.01.T01:three_prime_utr;Parent=MsG0380015720.01.T01
Gene Sequence

>MsG0380015720.01.T01

ATGGCTGAGAAGTTGGGTTCAGAAGAGAGGTCAGCAGGGATGAAGAGGAAACAATTCGCTGTTTTGGCTGACCTCAACATCGATCCCCCTGAAGCCGATGACGACGAAGACGACAATAATCATTCTTCTTCACTTCTTCCACCACATACTGAAATCACCAGGTTGATAAATGACGAAAACAGTCAAGATAAGAGTTTGTTGTCCAAAGACACCAATAGCAACGAAGCTGAAGGTAAATTGTTGAACAAATTGGGGAAATGCCGTTCCAAACCTAGCAAGACGGATTCTTCTATTGACTGTGGAGCTGATGCGGATGGTGATCCACATGTTCAAGGGGCTCCTTCAGCAAGGGAAGAAAAAGTTAGCAGCATGAAGACTGCTATATTGGCTTATGAGAAGGCAGAAGAGATATTACTCAGGCCAGAGGTTGAGATTGATAGGGCAGAGTTCCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATAATAGAAAGTTCATCAGAAAATAGTTCAGACAAAGAACTTGAACCTCACGAACTTGAGGAAATTCTTTCTAAACTGAAAGAATCAACGCAATCGGATATCAGGCAGGCAGCTGTATGGAATACACTGGGTTTTATCCTTCTTAAAACTGGCCGTGTGCAGAGTGCCATCTCAGTTTTGTCATCCTTGTTAGCCATTGCACCAGAGAACTATGATTGCCTTGGTAATCTTGGGATAGCTTACCTTCAAATTGGAGATTTGGAATTATCTGCGAAGTGTTTCCAAGAGTTGATCCTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCTCTCCTTTTGTGTAAAAATGCTTCAGTTGTAGCAGGTGCTGGTGCAAATGCTGCTGATGGTGCTTCAGCAGAACAATCCATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAGTTAAAGCAGATGGAAAATCAGCCCATATTTGGGCAAATCTTGCCTATGCATTTGCTATTACTGGGAATCATCGAATTTCCAGCAAGTGCTTGGAAAAGGCAGCAAAACTGGAACCTAATTGCATGTCTGCTCGATATGCCGTTGCTAGCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAATTGCTTTCGTCTGCTGGAAATGAGATGGCTTCCATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAATAGCTTGGGCCGGGCTTGCAATGGTCCACAAGGCTCAGCATGAGATATCAGCAGCATACGAAAGTGAACAGGACGGGCTGAAGGAAATTGAAGAACGTGCTGTTTCCAGCCTAAAGCAGGCCATAGCGGAAGATCCAGATGATGCAGTTCAGTGGCACCAACTTGGCCTTCACAGTCTTTGTGCCAGGGAATTCAAAACATCACAAAAATACCTCAAAGCTGCTGTTGCCTGTGACAAGGGTTGCAGCTATGCATGGTCTAACCTCGGTGTCTCACTTCAACTATCAGAAGAACAATCACAAGCTGAAGAAGTATACAAACGGGCTTTGTCTTTGGCAACGAAACAAGAAGCACATGCTATACTATCCAATATGGGAATTCTCTATCGCCAGCAGAAAAAATATGAACTTGCAAAGGCCATGTTTACAAAGTCACTTGAACTTCAGCCTGGATATGCTCCTGCATTCAACAATCTGGGTCTTGTTTTTATTGCAGAGGGTCTGTTAGAAGAGGCCAAGTATTGTTTTGAGAAAGCACTCCAATCAGATTCAATGCTGGATGCAGCCAAGTCTAACTTGATTAAGGTTGCCACAATGTCGAAGATATGCAAAGACCTTTCCTCATGCACTCTTAAAGAATGA

Protein sequence

>MsG0380015720.01.T01

MAEKLGSEERSAGMKRKQFAVLADLNIDPPEADDDEDDNNHSSSLLPPHTEITRLINDENSQDKSLLSKDTNSNEAEGKLLNKLGKCRSKPSKTDSSIDCGADADGDPHVQGAPSAREEKVSSMKTAILAYEKAEEILLRPEVEIDRAEFLSLVQIHHAQCLIIESSSENSSDKELEPHELEEILSKLKESTQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGDLELSAKCFQELILKDQNHPAALVNYAALLLCKNASVVAGAGANAADGASAEQSMAANVAKECLLAAVKADGKSAHIWANLAYAFAITGNHRISSKCLEKAAKLEPNCMSARYAVASHRIKEAERSQDPSELLSSAGNEMASIIRDGDSSLVELPIAWAGLAMVHKAQHEISAAYESEQDGLKEIEERAVSSLKQAIAEDPDDAVQWHQLGLHSLCAREFKTSQKYLKAAVACDKGCSYAWSNLGVSLQLSEEQSQAEEVYKRALSLATKQEAHAILSNMGILYRQQKKYELAKAMFTKSLELQPGYAPAFNNLGLVFIAEGLLEEAKYCFEKALQSDSMLDAAKSNLIKVATMSKICKDLSSCTLKE*