AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013073.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013073.01.T01 MTR_1g060580 96.970 297 9 0 58 354 246 542 0.0 585
MsG0380013073.01.T01 MTR_1g060580 84.906 53 8 0 1 53 106 158 1.88e-23 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013073.01.T01 AT1G19485 80.000 50 10 0 305 354 343 392 3.47e-18 86.7
MsG0380013073.01.T01 AT1G19485 80.000 50 10 0 305 354 343 392 3.47e-18 86.7

Find 70 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTGGTTCTCACAATT+TGG 0.152126 3:-29931719 None:intergenic
AATAATGGCCTACTTGTATC+TGG 0.238881 3:-29932013 None:intergenic
TGTATTCGCAGCAGCTTTCT+TGG 0.251698 3:-29931855 None:intergenic
GTATGCAGAAGCAGCTTTCT+TGG 0.268262 3:-29931927 None:intergenic
GCATTCTTTCCCTTTGTATT+CGG 0.294913 3:-29931905 None:intergenic
ATTAGGTTTACTTACGGAAT+TGG 0.296469 3:+29929305 MsG0380013073.01.T01:CDS
GGGCTATCTTGCTGTCTTGT+TGG 0.306280 3:+29932231 MsG0380013073.01.T01:CDS
GGCTATCTTGCTGTCTTGTT+GGG 0.307911 3:+29932232 MsG0380013073.01.T01:CDS
AATATCCATCTAAAAGCATT+AGG 0.316447 3:+29929288 MsG0380013073.01.T01:CDS
ATTTCTCCAGATGTAGTTCC+TGG 0.344586 3:+29931779 MsG0380013073.01.T01:CDS
GAACAGTAAGAGGAACAAAT+TGG 0.352749 3:-29931733 None:intergenic
GAAATAAATTCAGCTGAATC+TGG 0.353877 3:-29931761 None:intergenic
CTTGTTGGGCAATGGATCTC+TGG 0.375077 3:+29932246 MsG0380013073.01.T01:CDS
TTCTCACACTGAATCAATAA+TGG 0.377014 3:-29932028 None:intergenic
GTAGGTTGGATATTAATCAT+AGG 0.390058 3:+29931975 MsG0380013073.01.T01:CDS
TTAGGTTTACTTACGGAATT+GGG 0.426191 3:+29929306 MsG0380013073.01.T01:CDS
GATGCTTGAGGTTCCAATAC+AGG 0.430718 3:-29932079 None:intergenic
CTTGCTGTCTTGTTGGGCAA+TGG 0.437681 3:+29932238 MsG0380013073.01.T01:CDS
GAACTGCCAGGAACTACATC+TGG 0.439083 3:-29931785 None:intergenic
ACCACATGGTAGCCCTGTAT+TGG 0.442858 3:+29932066 MsG0380013073.01.T01:CDS
GCATCTGGTAGTGTCTCAAA+TGG 0.442876 3:+29931593 MsG0380013073.01.T01:CDS
AGGTGGCATGGGATGTCAAA+TGG 0.446867 3:+29932167 MsG0380013073.01.T01:CDS
TTCATCTGCCACTGTTCCTA+AGG 0.455578 3:+29929385 MsG0380013073.01.T01:CDS
AAAAGCATTAGGTTTACTTA+CGG 0.463447 3:+29929299 MsG0380013073.01.T01:CDS
CCACCTTTCCATTATGAGCT+AGG 0.467563 3:-29932150 None:intergenic
TCCTCATGCAAGCATCGAAT+GGG 0.467596 3:+29932211 MsG0380013073.01.T01:CDS
GTGTCATGCCTAGCTCATAA+TGG 0.467799 3:+29932142 MsG0380013073.01.T01:CDS
ATCATATCTCCCCGGGAAGA+AGG 0.467886 3:+29931374 MsG0380013073.01.T01:CDS
ACCATTAAATGTGCAGAGAA+TGG 0.470897 3:+29929255 None:intergenic
TCTGGAAGTTGAACAGTAAG+AGG 0.486423 3:-29931743 None:intergenic
CTATCCACTGCTATTACAGT+TGG 0.488965 3:-29931545 None:intergenic
TCTTGTTGCAAGAAGTAGGT+TGG 0.499166 3:+29931961 MsG0380013073.01.T01:CDS
ATTGATTCAGTGTGAGAATG+AGG 0.501894 3:+29932033 MsG0380013073.01.T01:CDS
ACAAATCGATAGAAATAAAG+AGG 0.505265 3:+29931429 MsG0380013073.01.T01:CDS
CTCATAATGGAAAGGTGGCA+TGG 0.517043 3:+29932155 MsG0380013073.01.T01:CDS
TAGGTTGGATATTAATCATA+GGG 0.524008 3:+29931976 MsG0380013073.01.T01:CDS
AAACTCTTGTTGCAAGAAGT+AGG 0.524383 3:+29931957 MsG0380013073.01.T01:CDS
TTCTTTCTAGGCCTTCCTCT+AGG 0.533374 3:-29931452 None:intergenic
TTCCTCATGCAAGCATCGAA+TGG 0.535078 3:+29932210 MsG0380013073.01.T01:CDS
GGGACCAAGTACATAGCATC+TGG 0.536684 3:+29931578 MsG0380013073.01.T01:CDS
ACTACCAGATGCTATGTACT+TGG 0.537317 3:-29931582 None:intergenic
AAAGCTGCTGCGAATACAAA+GGG 0.552131 3:+29931860 MsG0380013073.01.T01:CDS
AAAGCTGCTCCGAATACAAA+GGG 0.553544 3:+29931896 MsG0380013073.01.T01:CDS
ATAATGGCCTACTTGTATCT+GGG 0.555195 3:-29932012 None:intergenic
CATCTGGTAGTGTCTCAAAT+GGG 0.555891 3:+29931594 MsG0380013073.01.T01:CDS
TTAAATGTGCAGAGAATGGA+AGG 0.560081 3:+29929259 None:intergenic
GTTGTAGCCCAGATACAAGT+AGG 0.566508 3:+29932005 MsG0380013073.01.T01:CDS
GAAAGCTGCTCCGAATACAA+AGG 0.568270 3:+29931895 MsG0380013073.01.T01:CDS
AAATAAAGAGGCCTAGAGGA+AGG 0.580422 3:+29931441 MsG0380013073.01.T01:CDS
TGATGTTCATCAGAACTGCC+AGG 0.583511 3:-29931797 None:intergenic
TCATAATGGAAAGGTGGCAT+GGG 0.586605 3:+29932156 MsG0380013073.01.T01:CDS
AAGAAGTATCATATCTCCCC+GGG 0.588430 3:+29931367 MsG0380013073.01.T01:CDS
GAATCCAACTGTAATAGCAG+TGG 0.589763 3:+29931541 MsG0380013073.01.T01:CDS
GAAAGCTGCTGCGAATACAA+AGG 0.590265 3:+29931859 MsG0380013073.01.T01:CDS
CAGTGGATAGTACAAATTGT+GGG 0.590541 3:+29931558 MsG0380013073.01.T01:CDS
ATGCTTGAGGTTCCAATACA+GGG 0.598484 3:-29932078 None:intergenic
GAAGAAGTATCATATCTCCC+CGG 0.607569 3:+29931366 MsG0380013073.01.T01:CDS
GAGGAATCAAGATTGCTAAG+AGG 0.614969 3:-29932193 None:intergenic
CCTAGCTCATAATGGAAAGG+TGG 0.620737 3:+29932150 MsG0380013073.01.T01:CDS
GCAGTGGATAGTACAAATTG+TGG 0.626003 3:+29931557 MsG0380013073.01.T01:CDS
ATGCCTAGCTCATAATGGAA+AGG 0.628963 3:+29932147 MsG0380013073.01.T01:CDS
GCCCATTCGATGCTTGCATG+AGG 0.635290 3:-29932212 None:intergenic
GCTAGGCATGACACAACTCT+AGG 0.640886 3:-29932133 None:intergenic
ATGGGACAAGTAGATGCTTG+AGG 0.647867 3:-29932091 None:intergenic
ATAGAAATAAAGAGGCCTAG+AGG 0.655432 3:+29931437 MsG0380013073.01.T01:CDS
TGGCATGGGATGTCAAATGG+AGG 0.678240 3:+29932170 MsG0380013073.01.T01:CDS
GACTTGTACCTTAGGAACAG+TGG 0.679559 3:-29929393 None:intergenic
TCCAATACAGGGCTACCATG+TGG 0.685481 3:-29932067 None:intergenic
GAGGCAAATCATCAACCACA+TGG 0.705993 3:+29932052 MsG0380013073.01.T01:CDS
ACAGTGGCAGATGAAAACTG+AGG 0.800494 3:-29929377 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAATTAGAGTAAAATAT+AGG - Chr3:29929421-29929440 None:intergenic 10.0%
!! TAAAAGGATTTAGATTTAAA+TGG + Chr3:29930547-29930566 MsG0380013073.01.T01:intron 15.0%
!! TTTACTACATATATGAATAT+AGG - Chr3:29931132-29931151 None:intergenic 15.0%
!!! TTAAGTATATATTTGCTTTT+AGG + Chr3:29929469-29929488 MsG0380013073.01.T01:intron 15.0%
!! AAATTAGAGTAAAATATAGG+AGG - Chr3:29929418-29929437 None:intergenic 20.0%
!! CATAATTAACAAAAGGATTT+AGG - Chr3:29930959-29930978 None:intergenic 20.0%
!! TATCAAAATAGGTATATGTA+TGG - Chr3:29931075-29931094 None:intergenic 20.0%
!! TTACATACAAGAGTAAAAAA+AGG + Chr3:29931648-29931667 MsG0380013073.01.T01:CDS 20.0%
!! TTCTTAAATTGTGTTGAATT+TGG - Chr3:29930252-29930271 None:intergenic 20.0%
!! TTTATCACTAGAAATGATTT+AGG + Chr3:29930570-29930589 MsG0380013073.01.T01:intron 20.0%
!! TTTATTCAATGACATTTCTA+TGG + Chr3:29929641-29929660 MsG0380013073.01.T01:intron 20.0%
!!! AATCCTTTTGTTAATTATGA+TGG + Chr3:29930960-29930979 MsG0380013073.01.T01:intron 20.0%
!!! ACAACAATTTTCTAATACAA+AGG + Chr3:29931823-29931842 MsG0380013073.01.T01:CDS 20.0%
!!! AGATTTTATTTGAAGTTTGA+TGG + Chr3:29930034-29930053 MsG0380013073.01.T01:intron 20.0%
!!! AGCACATATTTTTGAAAAAA+TGG + Chr3:29930450-29930469 MsG0380013073.01.T01:intron 20.0%
!!! ATATTGTTTTGTTACTTCTT+TGG + Chr3:29929929-29929948 MsG0380013073.01.T01:intron 20.0%
!!! ATTGTTCTTTTAAGAGTTAA+GGG + Chr3:29930094-29930113 MsG0380013073.01.T01:intron 20.0%
!!! CAACAATTTTCTAATACAAA+GGG + Chr3:29931824-29931843 MsG0380013073.01.T01:CDS 20.0%
!!! TATTGTTCTTTTAAGAGTTA+AGG + Chr3:29930093-29930112 MsG0380013073.01.T01:intron 20.0%
!!! TATTGTTTTGTTACTTCTTT+GGG + Chr3:29929930-29929949 MsG0380013073.01.T01:intron 20.0%
!!! TCAACACAATTTAAGAATTT+TGG + Chr3:29930255-29930274 MsG0380013073.01.T01:intron 20.0%
!!! TTTCATTGTTATTTGTTTCA+TGG - Chr3:29930283-29930302 None:intergenic 20.0%
!!! TTTTATTCCAAACTGTTAAA+AGG + Chr3:29930531-29930550 MsG0380013073.01.T01:intron 20.0%
! AAAAAAAGTGAACGACAAAA+AGG - Chr3:29930808-29930827 None:intergenic 25.0%
! ACAAATCGATAGAAATAAAG+AGG + Chr3:29931429-29931448 MsG0380013073.01.T01:CDS 25.0%
! AGTTAATATCAAACCATACT+TGG - Chr3:29929608-29929627 None:intergenic 25.0%
! ATTACAAACAAGAGAAAAAG+AGG + Chr3:29931506-29931525 MsG0380013073.01.T01:CDS 25.0%
! CTAAATAGTATACACAATTG+CGG + Chr3:29930707-29930726 MsG0380013073.01.T01:intron 25.0%
! TCACATTTAATTGAACAATC+AGG - Chr3:29929852-29929871 None:intergenic 25.0%
! TCTCCATCATAATTAACAAA+AGG - Chr3:29930966-29930985 None:intergenic 25.0%
! TGATTGTTCAATTAAATGTG+AGG + Chr3:29929851-29929870 MsG0380013073.01.T01:intron 25.0%
!! CCATCTTTTGAATTCTTTTT+CGG - Chr3:29931686-29931705 None:intergenic 25.0%
!! TAGGTTGGATATTAATCATA+GGG + Chr3:29931976-29931995 MsG0380013073.01.T01:CDS 25.0%
!! TCTAAATCCTTTTAACAGTT+TGG - Chr3:29930541-29930560 None:intergenic 25.0%
!! TTTTCAGCATAATATGCAAA+AGG + Chr3:29929549-29929568 MsG0380013073.01.T01:intron 25.0%
!!! AAAAGCATTAGGTTTACTTA+CGG + Chr3:29929299-29929318 MsG0380013073.01.T01:CDS 25.0%
!!! AATATCCATCTAAAAGCATT+AGG + Chr3:29929288-29929307 MsG0380013073.01.T01:CDS 25.0%
!!! ATTACAGTTGGATTCTTTTT+TGG - Chr3:29931536-29931555 None:intergenic 25.0%
!!! CTTTTTCTCTTGTTTGTAAT+AGG - Chr3:29931506-29931525 None:intergenic 25.0%
!!! GATATTAACTTATTTTGTCG+TGG + Chr3:29929618-29929637 MsG0380013073.01.T01:intron 25.0%
!!! TACCTATTTTGATAGTTTTG+TGG + Chr3:29931081-29931100 MsG0380013073.01.T01:intron 25.0%
AAGAGTAAAAAAAGGCCTAA+AGG + Chr3:29931656-29931675 MsG0380013073.01.T01:CDS 30.0%
AATAGGTATATGTATGGAGT+AGG - Chr3:29931069-29931088 None:intergenic 30.0%
AATGCGTTAAAGAGAAAGTT+TGG + Chr3:29930425-29930444 MsG0380013073.01.T01:intron 30.0%
ACATAATTGTAGAATAGAGG+TGG + Chr3:29930206-29930225 MsG0380013073.01.T01:intron 30.0%
ACGGCATATATTATAAGCAA+GGG + Chr3:29930181-29930200 MsG0380013073.01.T01:intron 30.0%
ATATACTATAACTTCATGCC+TGG - Chr3:29929450-29929469 None:intergenic 30.0%
ATGCGTTAAAGAGAAAGTTT+GGG + Chr3:29930426-29930445 MsG0380013073.01.T01:intron 30.0%
ATGGTGTCTTCTAAATATCA+GGG + Chr3:29931335-29931354 MsG0380013073.01.T01:intron 30.0%
ATTAGGTTTACTTACGGAAT+TGG + Chr3:29929305-29929324 MsG0380013073.01.T01:CDS 30.0%
CCGAAAAAGAATTCAAAAGA+TGG + Chr3:29931683-29931702 MsG0380013073.01.T01:CDS 30.0%
CTCTAATTTAATTGTTTGCC+AGG + Chr3:29929429-29929448 MsG0380013073.01.T01:intron 30.0%
GAAATAAATTCAGCTGAATC+TGG - Chr3:29931764-29931783 None:intergenic 30.0%
GACCACAAAACTATCAAAAT+AGG - Chr3:29931086-29931105 None:intergenic 30.0%
GGTTCATCTTATCACAAAAT+GGG + Chr3:29931279-29931298 MsG0380013073.01.T01:intron 30.0%
TAAACCAAGTATCAGAAAGA+AGG - Chr3:29931231-29931250 None:intergenic 30.0%
TACGGCATATATTATAAGCA+AGG + Chr3:29930180-29930199 MsG0380013073.01.T01:intron 30.0%
TAGCAGTAAAACATAGTGTA+CGG + Chr3:29930162-29930181 MsG0380013073.01.T01:intron 30.0%
TATGGTGTCTTCTAAATATC+AGG + Chr3:29931334-29931353 MsG0380013073.01.T01:intron 30.0%
TGGTTCATCTTATCACAAAA+TGG + Chr3:29931278-29931297 MsG0380013073.01.T01:intron 30.0%
TTAGGTTTACTTACGGAATT+GGG + Chr3:29929306-29929325 MsG0380013073.01.T01:CDS 30.0%
TTCTCACACTGAATCAATAA+TGG - Chr3:29932031-29932050 None:intergenic 30.0%
! AATGCTACATTTTGTGGAAT+GGG - Chr3:29932112-29932131 None:intergenic 30.0%
! ACAAATTGGTTCTCACAATT+TGG - Chr3:29931722-29931741 None:intergenic 30.0%
! ATTTTGTGATAAGATGAACC+AGG - Chr3:29931279-29931298 None:intergenic 30.0%
! GTAAACCTAATGCTTTTAGA+TGG - Chr3:29929296-29929315 None:intergenic 30.0%
! GTAGGTTGGATATTAATCAT+AGG + Chr3:29931975-29931994 MsG0380013073.01.T01:CDS 30.0%
! TCGCTGATTATTGTTTAACT+TGG + Chr3:29929738-29929757 MsG0380013073.01.T01:intron 30.0%
! TTTTCAGTAGGATTCTTTCT+AGG - Chr3:29931467-29931486 None:intergenic 30.0%
!! AGTCAATTCTGTCTTTTTCA+TGG + Chr3:29929983-29930002 MsG0380013073.01.T01:intron 30.0%
!! TTATTTGAAGTTTGATGGTG+AGG + Chr3:29930039-29930058 MsG0380013073.01.T01:intron 30.0%
AAACCATACTTGGATTCTTG+AGG - Chr3:29929598-29929617 None:intergenic 35.0%
AAACCTCAAGAATCCAAGTA+TGG + Chr3:29929592-29929611 MsG0380013073.01.T01:intron 35.0%
AAACTCTTGTTGCAAGAAGT+AGG + Chr3:29931957-29931976 MsG0380013073.01.T01:CDS 35.0%
AAATGGAAAAACACTGCCTT+AGG + Chr3:29930467-29930486 MsG0380013073.01.T01:intron 35.0%
AACTTGGCTAAACACTTTGT+TGG + Chr3:29929754-29929773 MsG0380013073.01.T01:intron 35.0%
AATAATGGCCTACTTGTATC+TGG - Chr3:29932016-29932035 None:intergenic 35.0%
AGAGACTTTGTGATGAATGT+TGG + Chr3:29929780-29929799 MsG0380013073.01.T01:intron 35.0%
AGCGAAATTAACCTTTCAAG+TGG + Chr3:29930306-29930325 MsG0380013073.01.T01:intron 35.0%
ATAATGGCCTACTTGTATCT+GGG - Chr3:29932015-29932034 None:intergenic 35.0%
ATACTTGGATTCTTGAGGTT+TGG - Chr3:29929593-29929612 None:intergenic 35.0%
ATAGAAATAAAGAGGCCTAG+AGG + Chr3:29931437-29931456 MsG0380013073.01.T01:CDS 35.0%
ATGACCTTCTTTCTGATACT+TGG + Chr3:29931224-29931243 MsG0380013073.01.T01:intron 35.0%
CAGTGGATAGTACAAATTGT+GGG + Chr3:29931558-29931577 MsG0380013073.01.T01:CDS 35.0%
CGGCATATATTATAAGCAAG+GGG + Chr3:29930182-29930201 MsG0380013073.01.T01:intron 35.0%
CTATCAAATAGCGACTATAG+TGG - Chr3:29930678-29930697 None:intergenic 35.0%
CTCTTAAAAGAACAATACGC+TGG - Chr3:29930090-29930109 None:intergenic 35.0%
GAACAGTAAGAGGAACAAAT+TGG - Chr3:29931736-29931755 None:intergenic 35.0%
GACATTTGGCATACAGAAAA+TGG - Chr3:29930876-29930895 None:intergenic 35.0%
GATATAGTACTATTGCTGAG+AGG - Chr3:29930654-29930673 None:intergenic 35.0%
GCATTCTTTCCCTTTGTATT+CGG - Chr3:29931836-29931855 None:intergenic 35.0%
GGCACATAATTGTAGAATAG+AGG + Chr3:29930203-29930222 MsG0380013073.01.T01:intron 35.0%
GTGTTGAATTTGGTATGCTA+TGG - Chr3:29930242-29930261 None:intergenic 35.0%
TAGAAGACACCATATTTGCA+CGG - Chr3:29931328-29931347 None:intergenic 35.0%
TCAGCATAATATGCAAAAGG+AGG + Chr3:29929552-29929571 MsG0380013073.01.T01:intron 35.0%
TGTGATGTTTCATACGTTGA+GGG + Chr3:29930011-29930030 MsG0380013073.01.T01:intron 35.0%
TTATTTCCTACTTCCAAGTC+TGG - Chr3:29931175-29931194 None:intergenic 35.0%
! ATTGATTCAGTGTGAGAATG+AGG + Chr3:29932033-29932052 MsG0380013073.01.T01:CDS 35.0%
! CAATGCTACATTTTGTGGAA+TGG - Chr3:29932113-29932132 None:intergenic 35.0%
! GCGAAATTAACCTTTCAAGT+GGG + Chr3:29930307-29930326 MsG0380013073.01.T01:intron 35.0%
! GTAATTTTCGATCACAAAGC+AGG - Chr3:29930352-29930371 None:intergenic 35.0%
! GTTAATTATGATGGAGACAC+TGG + Chr3:29930969-29930988 MsG0380013073.01.T01:intron 35.0%
!! ATTGCTTCGTTGTTTTCAGT+AGG - Chr3:29931479-29931498 None:intergenic 35.0%
!!! TAGGTTTTTTTCCTTCTTCC+CGG - Chr3:29931388-29931407 None:intergenic 35.0%
!!! TTCTTTTTCGGTCTTCCTTT+AGG - Chr3:29931674-29931693 None:intergenic 35.0%
!!! TTTGTGCACGTGTCTTTTTT+AGG - Chr3:29931407-29931426 None:intergenic 35.0%
AAAGCTGCTCCGAATACAAA+GGG + Chr3:29931896-29931915 MsG0380013073.01.T01:CDS 40.0%
AAAGCTGCTGCGAATACAAA+GGG + Chr3:29931860-29931879 MsG0380013073.01.T01:CDS 40.0%
AAAGGAATTACCCACATCAC+AGG - Chr3:29930790-29930809 None:intergenic 40.0%
AAATAAAGAGGCCTAGAGGA+AGG + Chr3:29931441-29931460 MsG0380013073.01.T01:CDS 40.0%
AAGGAATTACCCACATCACA+GGG - Chr3:29930789-29930808 None:intergenic 40.0%
ACTACCAGATGCTATGTACT+TGG - Chr3:29931585-29931604 None:intergenic 40.0%
ACTTACCTTTGTTCCAGACT+TGG + Chr3:29931159-29931178 MsG0380013073.01.T01:intron 40.0%
AGCCAGGTGGTAATTTAACA+TGG - Chr3:29930934-29930953 None:intergenic 40.0%
ATACATGTCCAAACCACCTA+AGG - Chr3:29930486-29930505 None:intergenic 40.0%
ATGCTTGAGGTTCCAATACA+GGG - Chr3:29932081-29932100 None:intergenic 40.0%
ATTTCTCCAGATGTAGTTCC+TGG + Chr3:29931779-29931798 MsG0380013073.01.T01:CDS 40.0%
CAAAAGGATTTAGGTAAGCC+AGG - Chr3:29930950-29930969 None:intergenic 40.0%
CAAATTCCACCACGTTATAG+TGG + Chr3:29930736-29930755 MsG0380013073.01.T01:intron 40.0%
CACCATGTTAAATTACCACC+TGG + Chr3:29930929-29930948 MsG0380013073.01.T01:intron 40.0%
CTATCCACTGCTATTACAGT+TGG - Chr3:29931548-29931567 None:intergenic 40.0%
GAATCCAACTGTAATAGCAG+TGG + Chr3:29931541-29931560 MsG0380013073.01.T01:CDS 40.0%
GAATGTTGGAGGTTCTGTAT+GGG + Chr3:29929794-29929813 MsG0380013073.01.T01:intron 40.0%
GACTTTGTGATGAATGTTGG+AGG + Chr3:29929783-29929802 MsG0380013073.01.T01:intron 40.0%
GAGGAATCAAGATTGCTAAG+AGG - Chr3:29932196-29932215 None:intergenic 40.0%
GATGCTATACCACTATAACG+TGG - Chr3:29930748-29930767 None:intergenic 40.0%
GCAGTGGATAGTACAAATTG+TGG + Chr3:29931557-29931576 MsG0380013073.01.T01:CDS 40.0%
GCTACTTCTACTCACACATT+CGG - Chr3:29930146-29930165 None:intergenic 40.0%
GTGTGATGTTTCATACGTTG+AGG + Chr3:29930010-29930029 MsG0380013073.01.T01:intron 40.0%
GTGTTGTCAATCTCAGATAG+TGG + Chr3:29930616-29930635 MsG0380013073.01.T01:intron 40.0%
GTTCTGTATGGGCATTAGAT+TGG + Chr3:29929805-29929824 MsG0380013073.01.T01:intron 40.0%
TATAGGAGGACTTGTACCTT+AGG - Chr3:29929404-29929423 None:intergenic 40.0%
TCTGGAAGTTGAACAGTAAG+AGG - Chr3:29931746-29931765 None:intergenic 40.0%
TCTTGTTGCAAGAAGTAGGT+TGG + Chr3:29931961-29931980 MsG0380013073.01.T01:CDS 40.0%
TGAATGTTGGAGGTTCTGTA+TGG + Chr3:29929793-29929812 MsG0380013073.01.T01:intron 40.0%
TTGGCATACAGAAAATGGTG+AGG - Chr3:29930871-29930890 None:intergenic 40.0%
TTGTGATAAGATGAACCAGG+CGG - Chr3:29931276-29931295 None:intergenic 40.0%
TTTGTTCCAGACTTGGAAGT+AGG + Chr3:29931166-29931185 MsG0380013073.01.T01:intron 40.0%
! ATGCCTAGCTCATAATGGAA+AGG + Chr3:29932147-29932166 MsG0380013073.01.T01:CDS 40.0%
! CACTATAACGTGGTGGAATT+TGG - Chr3:29930738-29930757 None:intergenic 40.0%
! CATCTGGTAGTGTCTCAAAT+GGG + Chr3:29931594-29931613 MsG0380013073.01.T01:CDS 40.0%
! CATGGTGTCAACTAGCTATT+AGG - Chr3:29930916-29930935 None:intergenic 40.0%
! CTAGGCAATGCTACATTTTG+TGG - Chr3:29932118-29932137 None:intergenic 40.0%
! TACTTCCAAGTCTGGAACAA+AGG - Chr3:29931167-29931186 None:intergenic 40.0%
! TCATAATGGAAAGGTGGCAT+GGG + Chr3:29932156-29932175 MsG0380013073.01.T01:CDS 40.0%
! TGGTTTGGACATGTATTGAG+AGG + Chr3:29930490-29930509 MsG0380013073.01.T01:intron 40.0%
!! AAGAAGTATCATATCTCCCC+GGG + Chr3:29931367-29931386 MsG0380013073.01.T01:CDS 40.0%
!! AAGTTTGATGGTGAGGTAAG+GGG + Chr3:29930046-29930065 MsG0380013073.01.T01:intron 40.0%
!! GAAGAAGTATCATATCTCCC+CGG + Chr3:29931366-29931385 MsG0380013073.01.T01:CDS 40.0%
!! GAAGTTTGATGGTGAGGTAA+GGG + Chr3:29930045-29930064 MsG0380013073.01.T01:intron 40.0%
!! TGAAGTTTGATGGTGAGGTA+AGG + Chr3:29930044-29930063 MsG0380013073.01.T01:intron 40.0%
!!! AGGTTTTTTTCCTTCTTCCC+GGG - Chr3:29931387-29931406 None:intergenic 40.0%
AAAATGGGTGCCTCACTTAC+TGG + Chr3:29931294-29931313 MsG0380013073.01.T01:intron 45.0%
AAACACTGCCTTAGGTGGTT+TGG + Chr3:29930475-29930494 MsG0380013073.01.T01:intron 45.0%
AAGGATTTAGGTAAGCCAGG+TGG - Chr3:29930947-29930966 None:intergenic 45.0%
AATGTCAGATGCCATGGACT+CGG + Chr3:29930890-29930909 MsG0380013073.01.T01:intron 45.0%
ACAGTGGCAGATGAAAACTG+AGG - Chr3:29929380-29929399 None:intergenic 45.0%
AGGAATTACCCACATCACAG+GGG - Chr3:29930788-29930807 None:intergenic 45.0%
AGTCCATGGCATCTGACATT+TGG - Chr3:29930890-29930909 None:intergenic 45.0%
ATGCAAAAGGAGGAGCAACT+TGG + Chr3:29929562-29929581 MsG0380013073.01.T01:intron 45.0%
ATGCCAAATGTCAGATGCCA+TGG + Chr3:29930884-29930903 MsG0380013073.01.T01:intron 45.0%
ATGGGACAAGTAGATGCTTG+AGG - Chr3:29932094-29932113 None:intergenic 45.0%
CCACCTTTCCATTATGAGCT+AGG - Chr3:29932153-29932172 None:intergenic 45.0%
GAAAGCTGCTCCGAATACAA+AGG + Chr3:29931895-29931914 MsG0380013073.01.T01:CDS 45.0%
GAAAGCTGCTGCGAATACAA+AGG + Chr3:29931859-29931878 MsG0380013073.01.T01:CDS 45.0%
GACTTGTACCTTAGGAACAG+TGG - Chr3:29929396-29929415 None:intergenic 45.0%
GAGGCAAATCATCAACCACA+TGG + Chr3:29932052-29932071 MsG0380013073.01.T01:CDS 45.0%
GATGCTTGAGGTTCCAATAC+AGG - Chr3:29932082-29932101 None:intergenic 45.0%
GCTATACCACTATAACGTGG+TGG - Chr3:29930745-29930764 None:intergenic 45.0%
GCTATTATCCCCTGTGATGT+GGG + Chr3:29930777-29930796 MsG0380013073.01.T01:intron 45.0%
GTATGCAGAAGCAGCTTTCT+TGG - Chr3:29931930-29931949 None:intergenic 45.0%
GTGTCATGCCTAGCTCATAA+TGG + Chr3:29932142-29932161 MsG0380013073.01.T01:CDS 45.0%
GTTGTAGCCCAGATACAAGT+AGG + Chr3:29932005-29932024 MsG0380013073.01.T01:CDS 45.0%
TGATGTTCATCAGAACTGCC+AGG - Chr3:29931800-29931819 None:intergenic 45.0%
TGCAAAAGGAGGAGCAACTT+GGG + Chr3:29929563-29929582 MsG0380013073.01.T01:intron 45.0%
TGCTATTATCCCCTGTGATG+TGG + Chr3:29930776-29930795 MsG0380013073.01.T01:intron 45.0%
TGGAAAAACACTGCCTTAGG+TGG + Chr3:29930470-29930489 MsG0380013073.01.T01:intron 45.0%
TGTATTCGCAGCAGCTTTCT+TGG - Chr3:29931858-29931877 None:intergenic 45.0%
TTCAAGTGGGTGAGAGCAAA+GGG + Chr3:29930320-29930339 MsG0380013073.01.T01:intron 45.0%
TTCATCTGCCACTGTTCCTA+AGG + Chr3:29929385-29929404 MsG0380013073.01.T01:CDS 45.0%
TTCTTTCTAGGCCTTCCTCT+AGG - Chr3:29931455-29931474 None:intergenic 45.0%
TTTGCTCTCACCCACTTGAA+AGG - Chr3:29930320-29930339 None:intergenic 45.0%
! ATTGGTGTCCTAGGATGCAT+GGG + Chr3:29929823-29929842 MsG0380013073.01.T01:intron 45.0%
! CCTAGCTCATAATGGAAAGG+TGG + Chr3:29932150-29932169 MsG0380013073.01.T01:CDS 45.0%
! CTCATAATGGAAAGGTGGCA+TGG + Chr3:29932155-29932174 MsG0380013073.01.T01:CDS 45.0%
! GCATCTGGTAGTGTCTCAAA+TGG + Chr3:29931593-29931612 MsG0380013073.01.T01:CDS 45.0%
! GGCTATCTTGCTGTCTTGTT+GGG + Chr3:29932232-29932251 MsG0380013073.01.T01:CDS 45.0%
! GGTAAGGGGCACATAGTATA+TGG + Chr3:29930060-29930079 MsG0380013073.01.T01:intron 45.0%
! TTTCAAGTGGGTGAGAGCAA+AGG + Chr3:29930319-29930338 MsG0380013073.01.T01:intron 45.0%
!! TCCTCATGCAAGCATCGAAT+GGG + Chr3:29932211-29932230 MsG0380013073.01.T01:CDS 45.0%
!! TTCCTCATGCAAGCATCGAA+TGG + Chr3:29932210-29932229 MsG0380013073.01.T01:CDS 45.0%
!!! GGTTTTTTTCCTTCTTCCCG+GGG - Chr3:29931386-29931405 None:intergenic 45.0%
ACCACATGGTAGCCCTGTAT+TGG + Chr3:29932066-29932085 MsG0380013073.01.T01:CDS 50.0%
AGGTGGCATGGGATGTCAAA+TGG + Chr3:29932167-29932186 MsG0380013073.01.T01:CDS 50.0%
ATCATATCTCCCCGGGAAGA+AGG + Chr3:29931374-29931393 MsG0380013073.01.T01:CDS 50.0%
CTTGTTGGGCAATGGATCTC+TGG + Chr3:29932246-29932265 MsG0380013073.01.T01:CDS 50.0%
GAACTGCCAGGAACTACATC+TGG - Chr3:29931788-29931807 None:intergenic 50.0%
GCAAAAGGAGGAGCAACTTG+GGG + Chr3:29929564-29929583 MsG0380013073.01.T01:intron 50.0%
GCTAGGCATGACACAACTCT+AGG - Chr3:29932136-29932155 None:intergenic 50.0%
GGGACCAAGTACATAGCATC+TGG + Chr3:29931578-29931597 MsG0380013073.01.T01:CDS 50.0%
TAGCTATTAGGCCGAGTCCA+TGG - Chr3:29930904-29930923 None:intergenic 50.0%
TCCAATACAGGGCTACCATG+TGG - Chr3:29932070-29932089 None:intergenic 50.0%
TGGCATGGGATGTCAAATGG+AGG + Chr3:29932170-29932189 MsG0380013073.01.T01:CDS 50.0%
! CTTGCTGTCTTGTTGGGCAA+TGG + Chr3:29932238-29932257 MsG0380013073.01.T01:CDS 50.0%
! GATTGGTGTCCTAGGATGCA+TGG + Chr3:29929822-29929841 MsG0380013073.01.T01:intron 50.0%
! GGGCATTAGATTGGTGTCCT+AGG + Chr3:29929814-29929833 MsG0380013073.01.T01:intron 50.0%
! GGGCTATCTTGCTGTCTTGT+TGG + Chr3:29932231-29932250 MsG0380013073.01.T01:CDS 50.0%
! TTGGTGTCCTAGGATGCATG+GGG + Chr3:29929824-29929843 MsG0380013073.01.T01:intron 50.0%
GCCCATTCGATGCTTGCATG+AGG - Chr3:29932215-29932234 None:intergenic 55.0%
!! GCAGAGGTGCCGTGCAAATA+TGG + Chr3:29931316-29931335 MsG0380013073.01.T01:intron 55.0%
GGCACCTCTGCCAGTAAGTG+AGG - Chr3:29931307-29931326 None:intergenic 60.0%
GGTGCCTCACTTACTGGCAG+AGG + Chr3:29931300-29931319 MsG0380013073.01.T01:intron 60.0%
TCAGGCTCCCCATGCATCCT+AGG - Chr3:29929834-29929853 None:intergenic 60.0%
GCTGTTGCTGCTCATCCGCC+TGG + Chr3:29931258-29931277 MsG0380013073.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 29929263 29932276 29929263 ID=MsG0380013073.01;Name=MsG0380013073.01
Chr3 mRNA 29929263 29932276 29929263 ID=MsG0380013073.01.T01;Parent=MsG0380013073.01;Name=MsG0380013073.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|0|1|2|0|354
Chr3 exon 29929263 29929406 29929263 ID=MsG0380013073.01.T01:exon:6878;Parent=MsG0380013073.01.T01
Chr3 exon 29931356 29932276 29931356 ID=MsG0380013073.01.T01:exon:6877;Parent=MsG0380013073.01.T01
Chr3 CDS 29929263 29929406 29929263 ID=MsG0380013073.01.T01:cds;Parent=MsG0380013073.01.T01
Chr3 CDS 29931356 29932276 29931356 ID=MsG0380013073.01.T01:cds;Parent=MsG0380013073.01.T01
Gene Sequence

>MsG0380013073.01.T01

ATGTGCAGAGAATGGAAGGATTTTAAATATCCATCTAAAAGCATTAGGTTTACTTACGGAATTGGGAGCTCTGAGTGTTATGAGAGAAATGATATCAAAGATGACATAAACTTACCTCAGTTTTCATCTGCCACTGTTCCTAAGGGAACACAGCGAAGAAGTATCATATCTCCCCGGGAAGAAGGAAAAAAACCTAAAAAAGACACGTGCACAAATGACAAATCGATAGAAATAAAGAGGCCTAGAGGAAGGCCTAGAAAGAATCCTACTGAAAACAACGAAGCAATATCTCCTATTACAAACAAGAGAAAAAGAGGAAGACCAAAAAAGAATCCAACTGTAATAGCAGTGGATAGTACAAATTGTGGGACCAAGTACATAGCATCTGGTAGTGTCTCAAATGGGAATAATGAAAACAATGAAGAAATACTTCGTATTACATACAAGAGTAAAAAAAGGCCTAAAGGAAGACCGAAAAAGAATTCAAAAGATGGAACAGTGAGTGATCCAAATTGTGAGAACCAATTTGTTCCTCTTACTGTTCAACTTCCAGATTCAGCTGAATTTATTTCTCCAGATGTAGTTCCTGGCAGTTCTGATGAACATCATTCACAACAATTTTCTAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTGCGAATACAAAGGGAAAGAATGCTAAGAAAGCTGCTCCGAATACAAAGGGAAAGAATGCCAAGAAAGCTGCTTCTGCATACGATTCAGAAACTCTTGTTGCAAGAAGTAGGTTGGATATTAATCATAGGGAAAGAAGTTGTAGCCCAGATACAAGTAGGCCATTATTGATTCAGTGTGAGAATGAGGCAAATCATCAACCACATGGTAGCCCTGTATTGGAACCTCAAGCATCTACTTGTCCCATTCCACAAAATGTAGCATTGCCTAGAGTTGTGTCATGCCTAGCTCATAATGGAAAGGTGGCATGGGATGTCAAATGGAGGCCTCTTAGCAATCTTGATTCCTCATGCAAGCATCGAATGGGCTATCTTGCTGTCTTGTTGGGCAATGGATCTCTGGAAGTGTAA
Protein sequence

>MsG0380013073.01.T01

MCREWKDFKYPSKSIRFTYGIGSSECYERNDIKDDINLPQFSSATVPKGTQRRSIISPREEGKKPKKDTCTNDKSIEIKRPRGRPRKNPTENNEAISPITNKRKRGRPKKNPTVIAVDSTNCGTKYIASGSVSNGNNENNEEILRITYKSKKRPKGRPKKNSKDGTVSDPNCENQFVPLTVQLPDSAEFISPDVVPGSSDEHHSQQFSNTKGKNAKKAAANTKGKNAKKAAPNTKGKNAKKAASAYDSETLVARSRLDINHRERSCSPDTSRPLLIQCENEANHQPHGSPVLEPQASTCPIPQNVALPRVVSCLAHNGKVAWDVKWRPLSNLDSSCKHRMGYLAVLLGNGSLEV*