AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013279.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013279.01.T01 MTR_3g437840 85.000 160 24 0 105 264 2 161 1.54e-95 278
MsG0380013279.01.T01 MTR_2g090705 41.867 332 125 3 1 264 3 334 1.21e-85 259
MsG0380013279.01.T01 MTR_2g014470 40.000 340 124 4 1 264 3 338 6.65e-83 252
MsG0380013279.01.T01 MTR_4g015840 37.463 339 134 3 1 264 3 338 6.16e-78 239
MsG0380013279.01.T01 MTR_4g078850 37.572 346 129 5 1 264 3 343 1.19e-75 234
MsG0380013279.01.T01 MTR_3g108020 36.686 338 125 4 1 264 3 325 1.88e-69 217
MsG0380013279.01.T01 MTR_4g015840 42.562 242 99 1 63 264 20 261 8.36e-69 213
MsG0380013279.01.T01 MTR_2g014480 37.982 337 130 10 1 258 3 339 3.61e-62 199
MsG0380013279.01.T01 MTR_3g437360 40.179 336 112 7 1 248 4 338 6.76e-61 196
MsG0380013279.01.T01 MTR_5g037880 40.809 272 150 4 2 264 5 274 1.29e-60 193
MsG0380013279.01.T01 MTR_3g437850 57.485 167 25 3 1 121 1 167 3.26e-49 160
MsG0380013279.01.T01 MTR_2g006890 40.437 183 107 2 85 265 194 376 1.67e-40 144
MsG0380013279.01.T01 MTR_3g088140 38.333 180 110 1 87 265 175 354 2.70e-39 140
MsG0380013279.01.T01 MTR_7g109340 25.816 337 155 8 3 264 27 343 7.06e-23 96.3
MsG0380013279.01.T01 MTR_2g087660 31.915 141 94 1 126 264 218 358 8.65e-21 91.3
MsG0380013279.01.T01 MTR_8g006430 25.000 356 165 12 3 264 15 362 2.10e-20 90.1
MsG0380013279.01.T01 MTR_4g050420 31.915 141 94 1 126 264 216 356 1.01e-19 88.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013279.01.T01 AT3G08910 41.049 324 125 5 1 264 3 320 9.66e-80 243
MsG0380013279.01.T01 AT2G20560 38.462 338 130 5 1 264 3 336 1.37e-79 243
MsG0380013279.01.T01 AT3G47940 39.769 347 123 5 1 264 3 346 1.92e-79 244
MsG0380013279.01.T01 AT4G28480 38.439 346 130 5 1 264 3 347 3.89e-76 235
MsG0380013279.01.T01 AT5G01390 38.209 335 132 4 1 264 3 333 1.19e-75 233
MsG0380013279.01.T01 AT5G25530 38.261 345 122 5 1 264 3 337 4.81e-74 229
MsG0380013279.01.T01 AT1G59725 39.571 326 135 2 1 264 3 328 4.92e-74 229
MsG0380013279.01.T01 AT1G10350 38.395 349 125 7 1 264 3 346 3.84e-73 228
MsG0380013279.01.T01 AT5G25530 37.394 353 122 5 1 264 3 345 7.65e-73 226
MsG0380013279.01.T01 AT4G28480 40.000 300 131 6 1 264 3 289 1.27e-65 206
MsG0380013279.01.T01 AT5G01390 37.458 299 126 4 1 264 3 275 2.64e-63 200
MsG0380013279.01.T01 AT2G20550 50.000 180 90 0 85 264 104 283 9.28e-63 199
MsG0380013279.01.T01 AT2G20550 50.000 180 90 0 85 264 104 283 9.28e-63 199
MsG0380013279.01.T01 AT1G44160 39.665 179 108 0 87 265 176 354 6.43e-39 139
MsG0380013279.01.T01 AT1G11040 37.222 180 113 0 86 265 254 433 1.26e-38 140
MsG0380013279.01.T01 AT5G01390 31.104 299 106 5 1 264 3 236 2.81e-37 132
MsG0380013279.01.T01 AT3G62600 26.190 336 157 8 3 264 27 345 5.70e-24 99.4
MsG0380013279.01.T01 AT3G44110 34.043 141 91 1 126 264 218 358 1.53e-23 99.0
MsG0380013279.01.T01 AT5G22060 34.043 141 91 1 126 264 219 359 1.25e-22 96.7
MsG0380013279.01.T01 AT3G44110 32.432 111 73 1 126 234 218 328 4.96e-16 77.0

Find 64 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCTGGTTGTTTGGTTAT+TGG 0.105856 3:-34249368 None:intergenic
GATATTTACAATGATTTCTT+TGG 0.250629 3:+34246047 MsG0380013279.01.T01:CDS
CATCTGCCACAGTTATCTTT+TGG 0.254427 3:-34249232 None:intergenic
GGTTATTGGCATCCCTTCAT+TGG 0.296706 3:-34249354 None:intergenic
TCCCTTCCTCCCTGGTTGTT+TGG 0.304363 3:-34249375 None:intergenic
CTTGTCACCCTTCTCTTTGA+AGG 0.307168 3:-34249117 None:intergenic
CGGAAAATCTATGACCAATA+TGG 0.309091 3:+34245909 MsG0380013279.01.T01:CDS
GTTATTGGCATCCCTTCATT+GGG 0.325745 3:-34249353 None:intergenic
AACATTGGAAATCCCTGCTT+TGG 0.339373 3:+34249268 MsG0380013279.01.T01:CDS
CAAAACAATGTTCTCACAAT+AGG 0.361461 3:-34246101 None:intergenic
GGGACTTTGTGCTCATAGTC+AGG 0.400832 3:-34249332 None:intergenic
TGCTGAGGAGTTAACCTTGA+GGG 0.426712 3:-34249428 None:intergenic
GATTTCTTTGGTCGTGAGAA+TGG 0.433242 3:+34246059 MsG0380013279.01.T01:CDS
GAAGACCTTCTTCGCCATAT+TGG 0.438476 3:-34245923 None:intergenic
TAGTCAGGTGTGACTACATT+TGG 0.447989 3:-34249317 None:intergenic
GTGTGACTACATTTGGCAAC+TGG 0.449709 3:-34249310 None:intergenic
TTTAAAGTTCCCTTCCTCCC+TGG 0.465519 3:-34249383 None:intergenic
CACCACACGCTCGTTATACT+AGG 0.470803 3:+34249186 MsG0380013279.01.T01:CDS
TATGACCAATATGGCGAAGA+AGG 0.487637 3:+34245918 MsG0380013279.01.T01:CDS
AAATCCCTGCTTTGGATGGA+AGG 0.492818 3:+34249276 MsG0380013279.01.T01:CDS
TAAAACGTTGTAGTAATCCA+TGG 0.496047 3:-34245725 None:intergenic
GAGAAGGGTGACAAGAAGCC+TGG 0.498438 3:+34249125 MsG0380013279.01.T01:CDS
TTGGAAATCCCTGCTTTGGA+TGG 0.500318 3:+34249272 MsG0380013279.01.T01:CDS
GAGCACAAAGTCCCCAATGA+AGG 0.506226 3:+34249341 MsG0380013279.01.T01:CDS
AGAATCCTTCCATCCAAAGC+AGG 0.506880 3:-34249281 None:intergenic
AGCATGATTAACTACGGTTC+TGG 0.509469 3:-34246171 None:intergenic
GTCTTGAAGAATTGTACAAT+GGG 0.509611 3:+34246126 MsG0380013279.01.T01:CDS
GTATAGTAATATTGAGGAGG+AGG 0.510874 3:+34249046 MsG0380013279.01.T01:CDS
ACGGTGGTGCCGCCCCTCCA+CGG 0.514233 3:+34245949 MsG0380013279.01.T01:CDS
AGAACCGTAGTTAATCATGC+TGG 0.516119 3:+34246173 MsG0380013279.01.T01:CDS
TTTCAGGTATAGTAATATTG+AGG 0.516243 3:+34249040 MsG0380013279.01.T01:intron
CACGCTCGTTATACTAGGAA+TGG 0.517367 3:+34249191 MsG0380013279.01.T01:CDS
ATATCAGCTGGGATGATGCC+AGG 0.518154 3:-34249143 None:intergenic
AACCAAACAACCAGGGAGGA+AGG 0.520867 3:+34249373 MsG0380013279.01.T01:CDS
TTGACTATTGATGTAAAAGC+TGG 0.525780 3:+34249071 MsG0380013279.01.T01:CDS
TGCTCTCACAAATAAAACAT+TGG 0.539708 3:+34249253 MsG0380013279.01.T01:CDS
GGCGAAGAAGGTCTTCAATA+CGG 0.551617 3:+34245930 MsG0380013279.01.T01:CDS
ACCAAACAACCAGGGAGGAA+GGG 0.555678 3:+34249374 MsG0380013279.01.T01:CDS
AAAGGTTACCTTCAAAGAGA+AGG 0.563765 3:+34249109 MsG0380013279.01.T01:CDS
TGATAATCTGAAGATGAAGA+TGG 0.564778 3:-34246002 None:intergenic
CAGGTATAGTAATATTGAGG+AGG 0.567400 3:+34249043 MsG0380013279.01.T01:intron
AGAAGAATGCCGTGGAGGGG+CGG 0.568114 3:-34245958 None:intergenic
AGCACAAAGTCCCCAATGAA+GGG 0.568803 3:+34249342 MsG0380013279.01.T01:CDS
GAGAAGAAGAATGCCGTGGA+GGG 0.579084 3:-34245962 None:intergenic
GAACCGTAGTTAATCATGCT+GGG 0.586046 3:+34246174 MsG0380013279.01.T01:CDS
CGAGAAGAAGAATGCCGTGG+AGG 0.586860 3:-34245963 None:intergenic
AAGGTTACCTTCAAAGAGAA+GGG 0.588105 3:+34249110 MsG0380013279.01.T01:CDS
AGTCTTGAAGAATTGTACAA+TGG 0.590259 3:+34246125 MsG0380013279.01.T01:CDS
AGAAGAAGAATGCCGTGGAG+GGG 0.594807 3:-34245961 None:intergenic
TTACCCAGCATGATTAACTA+CGG 0.603079 3:-34246177 None:intergenic
CTATTGATGTAAAAGCTGGA+TGG 0.604030 3:+34249075 MsG0380013279.01.T01:CDS
TTGACATCAAGTATCCCTCA+AGG 0.608887 3:+34249414 MsG0380013279.01.T01:CDS
GAATCCTTCCATCCAAAGCA+GGG 0.617620 3:-34249280 None:intergenic
ATGCCAATAACCAAACAACC+AGG 0.618075 3:+34249365 MsG0380013279.01.T01:CDS
TTATTGGCATCCCTTCATTG+GGG 0.630031 3:-34249352 None:intergenic
TGTACAATGGGACTAGCAGA+AGG 0.635080 3:+34246138 MsG0380013279.01.T01:CDS
CATTCTTCTTCTCGTTCTCG+CGG 0.642409 3:+34245972 MsG0380013279.01.T01:CDS
GAACGAGAAGAAGAATGCCG+TGG 0.654089 3:-34245966 None:intergenic
TTCCTAGTATAACGAGCGTG+TGG 0.677701 3:-34249188 None:intergenic
TTGCTGAGGAGTTAACCTTG+AGG 0.687155 3:-34249429 None:intergenic
TGCCAATAACCAAACAACCA+GGG 0.704089 3:+34249366 MsG0380013279.01.T01:CDS
GAAGAAGGTCTTCAATACGG+TGG 0.715154 3:+34245933 MsG0380013279.01.T01:CDS
GATTATCCAAAAGATAACTG+TGG 0.729370 3:+34249226 MsG0380013279.01.T01:CDS
CAATAACCAAACAACCAGGG+AGG 0.753546 3:+34249369 MsG0380013279.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACAAATTTATGTAATT+AGG + Chr3:34247214-34247233 MsG0380013279.01.T01:intron 10.0%
!! ATAATAACAAAAATAAAGTT+AGG - Chr3:34246219-34246238 None:intergenic 10.0%
!! TAATAACAAAAATAAAGTTA+GGG - Chr3:34246218-34246237 None:intergenic 10.0%
!! TAATTACATAAATTTGTATT+TGG - Chr3:34247215-34247234 None:intergenic 10.0%
!! AAATAATATGAGATCATTAT+AGG + Chr3:34246767-34246786 MsG0380013279.01.T01:intron 15.0%
!! AATAATATGAGATCATTATA+GGG + Chr3:34246768-34246787 MsG0380013279.01.T01:intron 15.0%
!! AATTGATAGAAAATCAAAAA+CGG - Chr3:34248236-34248255 None:intergenic 15.0%
!!! AATTTTTGTTGTAATTGATT+AGG + Chr3:34246256-34246275 MsG0380013279.01.T01:intron 15.0%
!!! ATTTTTGTTGTAATTGATTA+GGG + Chr3:34246257-34246276 MsG0380013279.01.T01:intron 15.0%
!!! GATTAGTAATTTTGTTTATT+GGG - Chr3:34248740-34248759 None:intergenic 15.0%
!!! TGATTAGTAATTTTGTTTAT+TGG - Chr3:34248741-34248760 None:intergenic 15.0%
!! AAAAAAAGAGTTAGTTACTA+AGG + Chr3:34246967-34246986 MsG0380013279.01.T01:intron 20.0%
!! AATATTACTATACCTGAAAT+GGG - Chr3:34249039-34249058 None:intergenic 20.0%
!! AATCATAACATAAACCAAAA+AGG - Chr3:34246366-34246385 None:intergenic 20.0%
!! AGTGTTAAACATAACTATAA+TGG + Chr3:34247312-34247331 MsG0380013279.01.T01:intron 20.0%
!! ATATCTGATTCTAATATGAT+AGG + Chr3:34248062-34248081 MsG0380013279.01.T01:intron 20.0%
!! ATCATAACATAAACCAAAAA+GGG - Chr3:34246365-34246384 None:intergenic 20.0%
!! ATTGAAACTACTAATTATCA+GGG + Chr3:34246391-34246410 MsG0380013279.01.T01:intron 20.0%
!! GATATTTACAATGATTTCTT+TGG + Chr3:34246047-34246066 MsG0380013279.01.T01:CDS 20.0%
!! TGTAATTATATGATATGTGT+CGG + Chr3:34247561-34247580 MsG0380013279.01.T01:intron 20.0%
!! TTGTATTTGGATTATCAATA+TGG - Chr3:34247202-34247221 None:intergenic 20.0%
!! TTTCATAATTTGACAGAAAT+TGG - Chr3:34246739-34246758 None:intergenic 20.0%
!!! AAAATAACTAAACTGTTTTC+AGG - Chr3:34248382-34248401 None:intergenic 20.0%
!!! AAATAACTAAACTGTTTTCA+GGG - Chr3:34248381-34248400 None:intergenic 20.0%
!!! AGAAATTGGTTTTAACAAAA+GGG - Chr3:34246725-34246744 None:intergenic 20.0%
!!! ATTATTCACTTAAAAGTGTA+CGG - Chr3:34247016-34247035 None:intergenic 20.0%
!!! CTTTCAAACTTTTTCAAATT+GGG - Chr3:34246591-34246610 None:intergenic 20.0%
!!! TAGTTAATTTGTCACTTTTT+TGG + Chr3:34248493-34248512 MsG0380013279.01.T01:intron 20.0%
!!! TCTTTCAAACTTTTTCAAAT+TGG - Chr3:34246592-34246611 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG - Chr3:34247531-34247550 None:intergenic 20.0%
!!! TTGAAAAAAAAAGTATGCAA+TGG - Chr3:34246563-34246582 None:intergenic 20.0%
! AATCTTACTGAAAGTTTCAT+TGG + Chr3:34248287-34248306 MsG0380013279.01.T01:intron 25.0%
! ACAAATTAACTACAAACTTG+AGG - Chr3:34248485-34248504 None:intergenic 25.0%
! ACTTCCTCAATTTAAATCAA+AGG - Chr3:34246860-34246879 None:intergenic 25.0%
! ATAAAGTTTGTGATCCATAT+GGG - Chr3:34246691-34246710 None:intergenic 25.0%
! ATAATCTCATACAAACTGTA+TGG - Chr3:34248826-34248845 None:intergenic 25.0%
! ATCACAAAAATAATATCAGC+TGG - Chr3:34249158-34249177 None:intergenic 25.0%
! CAAATTAACTACAAACTTGA+GGG - Chr3:34248484-34248503 None:intergenic 25.0%
! CAATATTACTATACCTGAAA+TGG - Chr3:34249040-34249059 None:intergenic 25.0%
! CTAATATGATAGGATAGTAT+AGG + Chr3:34248072-34248091 MsG0380013279.01.T01:intron 25.0%
! CTCTATTGAATAGAAGAATT+TGG + Chr3:34248897-34248916 MsG0380013279.01.T01:intron 25.0%
! CTTCCTCAATTTAAATCAAA+GGG - Chr3:34246859-34246878 None:intergenic 25.0%
! GATTGAAACTACTAATTATC+AGG + Chr3:34246390-34246409 MsG0380013279.01.T01:intron 25.0%
! GGTTAATTAAGTAAAGAGTT+AGG + Chr3:34246412-34246431 MsG0380013279.01.T01:intron 25.0%
! GTCCTACAAAATACAAAATT+CGG + Chr3:34247165-34247184 MsG0380013279.01.T01:intron 25.0%
! GTTTGAAAGAGAATCAAATT+TGG + Chr3:34246602-34246621 MsG0380013279.01.T01:intron 25.0%
! TCACAAAAATAATATCAGCT+GGG - Chr3:34249157-34249176 None:intergenic 25.0%
! TCATAACATAAACCAAAAAG+GGG - Chr3:34246364-34246383 None:intergenic 25.0%
! TCCTACTATAACAGATAAAT+CGG - Chr3:34248856-34248875 None:intergenic 25.0%
! TGCAATACTTATATTCTAGA+TGG + Chr3:34248001-34248020 MsG0380013279.01.T01:intron 25.0%
! TTGAATAGAAGAATTTGGAA+AGG + Chr3:34248902-34248921 MsG0380013279.01.T01:intron 25.0%
! TTGATTCAAAGATTATTTCC+AGG + Chr3:34248194-34248213 MsG0380013279.01.T01:intron 25.0%
!! AAAAAAGTATGCAATGGAAA+AGG - Chr3:34246557-34246576 None:intergenic 25.0%
!! AAACCCTTTGATTTAAATTG+AGG + Chr3:34246853-34246872 MsG0380013279.01.T01:intron 25.0%
!! GAATATAAGTATTGCATATC+AGG - Chr3:34247997-34248016 None:intergenic 25.0%
!! GGACTAAACACTAAATATTT+TGG - Chr3:34247149-34247168 None:intergenic 25.0%
!! TTTCAGGTATAGTAATATTG+AGG + Chr3:34249040-34249059 MsG0380013279.01.T01:intron 25.0%
!!! ACTTTGTTTCCTATTTTTCT+AGG - Chr3:34248425-34248444 None:intergenic 25.0%
!!! CAGAAATTGGTTTTAACAAA+AGG - Chr3:34246726-34246745 None:intergenic 25.0%
!!! CTTTTTAGTTAAGGTTTAAG+TGG + Chr3:34248331-34248350 MsG0380013279.01.T01:intron 25.0%
!!! GAAATTGGTTTTAACAAAAG+GGG - Chr3:34246724-34246743 None:intergenic 25.0%
!!! TAGTAATTTTGTTTATTGGG+TGG - Chr3:34248737-34248756 None:intergenic 25.0%
!!! TGTCACTTTTTTGGTATATT+TGG + Chr3:34248502-34248521 MsG0380013279.01.T01:intron 25.0%
!!! TTGTGCTTACTTTTTAGTTA+AGG + Chr3:34248322-34248341 MsG0380013279.01.T01:intron 25.0%
AGTCTTGAAGAATTGTACAA+TGG + Chr3:34246125-34246144 MsG0380013279.01.T01:CDS 30.0%
ATCAAATCAAAACTGAGAAG+TGG + Chr3:34248757-34248776 MsG0380013279.01.T01:intron 30.0%
ATCCCAATTTCATAAACTTG+GGG - Chr3:34247389-34247408 None:intergenic 30.0%
ATGAATCACTCTAAGCAAAA+AGG - Chr3:34247457-34247476 None:intergenic 30.0%
CAAAACAATGTTCTCACAAT+AGG - Chr3:34246104-34246123 None:intergenic 30.0%
CATAAAGTTTGTGATCCATA+TGG - Chr3:34246692-34246711 None:intergenic 30.0%
CCAAATCTCATCCATTAAAT+TGG - Chr3:34247058-34247077 None:intergenic 30.0%
CTACTATTATCAATAACTCC+AGG - Chr3:34247283-34247302 None:intergenic 30.0%
GAAACCAGTTTAATTGTACA+TGG + Chr3:34246925-34246944 MsG0380013279.01.T01:intron 30.0%
GATCCCAATTTCATAAACTT+GGG - Chr3:34247390-34247409 None:intergenic 30.0%
GATTATCCAAAAGATAACTG+TGG + Chr3:34249226-34249245 MsG0380013279.01.T01:CDS 30.0%
GTAAGGATATGTTGAACAAA+CGG + Chr3:34248779-34248798 MsG0380013279.01.T01:intron 30.0%
GTCTTGAAGAATTGTACAAT+GGG + Chr3:34246126-34246145 MsG0380013279.01.T01:CDS 30.0%
TAAAAGCTGGATGGAAAAAA+GGG + Chr3:34249084-34249103 MsG0380013279.01.T01:CDS 30.0%
TAAGAAGGTAGGATAAAAGA+AGG + Chr3:34247643-34247662 MsG0380013279.01.T01:intron 30.0%
TCCAGATCAAACCAATTTAA+TGG + Chr3:34247044-34247063 MsG0380013279.01.T01:intron 30.0%
TCTATATCCATCATAAGTCA+TGG - Chr3:34246833-34246852 None:intergenic 30.0%
TCTCAAATTATTAGTGGAGT+CGG - Chr3:34247525-34247544 None:intergenic 30.0%
TGAATCACTCTAAGCAAAAA+GGG - Chr3:34247456-34247475 None:intergenic 30.0%
TGATAATCTGAAGATGAAGA+TGG - Chr3:34246005-34246024 None:intergenic 30.0%
TGCTCTCACAAATAAAACAT+TGG + Chr3:34249253-34249272 MsG0380013279.01.T01:CDS 30.0%
TGTGCAAATCCTAGAAAAAT+AGG + Chr3:34248413-34248432 MsG0380013279.01.T01:intron 30.0%
TTGACTATTGATGTAAAAGC+TGG + Chr3:34249071-34249090 MsG0380013279.01.T01:CDS 30.0%
! AATTTTGCTCTTTCTGATGA+TGG + Chr3:34248259-34248278 MsG0380013279.01.T01:intron 30.0%
! ACCGATTTATCTGTTATAGT+AGG + Chr3:34248852-34248871 MsG0380013279.01.T01:intron 30.0%
! CCAATTTAATGGATGAGATT+TGG + Chr3:34247055-34247074 MsG0380013279.01.T01:intron 30.0%
! GTCCGAATTTTGTATTTTGT+AGG - Chr3:34247170-34247189 None:intergenic 30.0%
! GTTTTTACATTTCTCTCGAT+AGG + Chr3:34248123-34248142 MsG0380013279.01.T01:intron 30.0%
! TTATCATTCCACAGAACTTT+TGG + Chr3:34248653-34248672 MsG0380013279.01.T01:intron 30.0%
!! ATTAAATTGGTTTGATCTGG+AGG - Chr3:34247045-34247064 None:intergenic 30.0%
!! GTGTCATTTACTTAAGAGTT+AGG - Chr3:34247115-34247134 None:intergenic 30.0%
!! TCCATTAAATTGGTTTGATC+TGG - Chr3:34247048-34247067 None:intergenic 30.0%
!! TTGATAATGTGCTTAGAACA+TGG + Chr3:34247720-34247739 MsG0380013279.01.T01:intron 30.0%
!! TTTTGTTTATTGGGTGGATA+TGG - Chr3:34248731-34248750 None:intergenic 30.0%
AAAGGTTACCTTCAAAGAGA+AGG + Chr3:34249109-34249128 MsG0380013279.01.T01:CDS 35.0%
AAGAGTTAGTTACTAAGGTG+TGG + Chr3:34246972-34246991 MsG0380013279.01.T01:intron 35.0%
AAGGTTACCTTCAAAGAGAA+GGG + Chr3:34249110-34249129 MsG0380013279.01.T01:CDS 35.0%
ACATTTCTCTCGATAGGATT+GGG + Chr3:34248129-34248148 MsG0380013279.01.T01:intron 35.0%
ACTGAATCCATGACTTATGA+TGG + Chr3:34246823-34246842 MsG0380013279.01.T01:intron 35.0%
AGAATGCCAATGATTGGATT+TGG - Chr3:34246637-34246656 None:intergenic 35.0%
AGACCCCAAGTTTATGAAAT+TGG + Chr3:34247383-34247402 MsG0380013279.01.T01:intron 35.0%
ATACACCCTCAATCTTAGAA+GGG + Chr3:34247954-34247973 MsG0380013279.01.T01:intron 35.0%
ATCAAAACTGAGAAGTGGTA+AGG + Chr3:34248762-34248781 MsG0380013279.01.T01:intron 35.0%
ATCAATAACTCCAGGCTAAA+AGG - Chr3:34247275-34247294 None:intergenic 35.0%
ATCGCCATGTACAATTAAAC+TGG - Chr3:34246932-34246951 None:intergenic 35.0%
ATTGAGGAAGTAGCCAATTA+AGG + Chr3:34246869-34246888 MsG0380013279.01.T01:intron 35.0%
CAGGTATAGTAATATTGAGG+AGG + Chr3:34249043-34249062 MsG0380013279.01.T01:intron 35.0%
CGATCCCAATTTCATAAACT+TGG - Chr3:34247391-34247410 None:intergenic 35.0%
CGGAAAATCTATGACCAATA+TGG + Chr3:34245909-34245928 MsG0380013279.01.T01:CDS 35.0%
CTATTGATGTAAAAGCTGGA+TGG + Chr3:34249075-34249094 MsG0380013279.01.T01:CDS 35.0%
CTCAGCAAAAATCTGATCTA+AGG + Chr3:34249444-34249463 MsG0380013279.01.T01:CDS 35.0%
CTCCTTGTATTTGATTCTCA+TGG + Chr3:34247803-34247822 MsG0380013279.01.T01:intron 35.0%
GAAGAAAGAATGCCAATGAT+TGG - Chr3:34246643-34246662 None:intergenic 35.0%
GAATTAACCAATGAGGAATC+AGG - Chr3:34246667-34246686 None:intergenic 35.0%
GACCCCAAGTTTATGAAATT+GGG + Chr3:34247384-34247403 MsG0380013279.01.T01:intron 35.0%
GTAAAAGCTGGATGGAAAAA+AGG + Chr3:34249083-34249102 MsG0380013279.01.T01:CDS 35.0%
GTATAGTAATATTGAGGAGG+AGG + Chr3:34249046-34249065 MsG0380013279.01.T01:CDS 35.0%
GTTTAAGTGGAATTTGATCC+AGG + Chr3:34248344-34248363 MsG0380013279.01.T01:intron 35.0%
TACATTTCTCTCGATAGGAT+TGG + Chr3:34248128-34248147 MsG0380013279.01.T01:intron 35.0%
TATGGGAGAATTAACCAATG+AGG - Chr3:34246674-34246693 None:intergenic 35.0%
TCAATAACTCCAGGCTAAAA+GGG - Chr3:34247274-34247293 None:intergenic 35.0%
TCTGCTAACAACTTAACCAA+TGG + Chr3:34248697-34248716 MsG0380013279.01.T01:intron 35.0%
TGTAACAGTGTGGTATCTAA+TGG + Chr3:34248154-34248173 MsG0380013279.01.T01:intron 35.0%
TTACCCAGCATGATTAACTA+CGG - Chr3:34246180-34246199 None:intergenic 35.0%
! ATTAAACTGGTTTCTTCTCC+AGG - Chr3:34246919-34246938 None:intergenic 35.0%
! CATTGGTTAATTCTCCCATA+TGG + Chr3:34246674-34246693 MsG0380013279.01.T01:intron 35.0%
! CCATTGATTAGAAAGATCGA+CGG - Chr3:34246485-34246504 None:intergenic 35.0%
! CTTAGATCAGATTTTTGCTG+AGG - Chr3:34249446-34249465 None:intergenic 35.0%
! GTCATAGATTTTCCGCTTTA+CGG - Chr3:34245904-34245923 None:intergenic 35.0%
! TCATAGATTTTCCGCTTTAC+GGG - Chr3:34245903-34245922 None:intergenic 35.0%
! TTCAGCCTCAATTCTTTTTC+AGG - Chr3:34245835-34245854 None:intergenic 35.0%
!! TGAGAATGGTTTTGCAAAGA+AGG + Chr3:34246073-34246092 MsG0380013279.01.T01:CDS 35.0%
AAAGATCGACGGATGAGATT+TGG - Chr3:34246474-34246493 None:intergenic 40.0%
AACATTGGAAATCCCTGCTT+TGG + Chr3:34249268-34249287 MsG0380013279.01.T01:CDS 40.0%
AACTATCACTTTACCCCTCT+CGG - Chr3:34248545-34248564 None:intergenic 40.0%
AACTTGTGCAATCCCATTTC+AGG + Chr3:34249024-34249043 MsG0380013279.01.T01:intron 40.0%
ACCCACCTGAAAAAGAATTG+AGG + Chr3:34245827-34245846 MsG0380013279.01.T01:intron 40.0%
AGAACCGTAGTTAATCATGC+TGG + Chr3:34246173-34246192 MsG0380013279.01.T01:CDS 40.0%
AGCATGATTAACTACGGTTC+TGG - Chr3:34246174-34246193 None:intergenic 40.0%
ATGCCAATAACCAAACAACC+AGG + Chr3:34249365-34249384 MsG0380013279.01.T01:CDS 40.0%
ATGCCAATGATTGGATTTGG+AGG - Chr3:34246634-34246653 None:intergenic 40.0%
ATTAAATGTGTGACCGAGAG+GGG + Chr3:34248529-34248548 MsG0380013279.01.T01:intron 40.0%
CATACACCCTCAATCTTAGA+AGG + Chr3:34247953-34247972 MsG0380013279.01.T01:intron 40.0%
CCGTCGATCTTTCTAATCAA+TGG + Chr3:34246482-34246501 MsG0380013279.01.T01:intron 40.0%
CGCCATGAGAATCAAATACA+AGG - Chr3:34247808-34247827 None:intergenic 40.0%
CTACAAACTTGAGGGATGTT+CGG - Chr3:34248476-34248495 None:intergenic 40.0%
GAACCGTAGTTAATCATGCT+GGG + Chr3:34246174-34246193 MsG0380013279.01.T01:CDS 40.0%
GAAGTAGCCAATTAAGGAGA+TGG + Chr3:34246875-34246894 MsG0380013279.01.T01:intron 40.0%
GATTAAATGTGTGACCGAGA+GGG + Chr3:34248528-34248547 MsG0380013279.01.T01:intron 40.0%
GATTTCTTTGGTCGTGAGAA+TGG + Chr3:34246059-34246078 MsG0380013279.01.T01:CDS 40.0%
GTACATGGCGATAGAAAGAA+TGG + Chr3:34246940-34246959 MsG0380013279.01.T01:intron 40.0%
GTTATTGGCATCCCTTCATT+GGG - Chr3:34249356-34249375 None:intergenic 40.0%
GTTCTGTTTGGGAGTTAAGA+AGG + Chr3:34247628-34247647 MsG0380013279.01.T01:intron 40.0%
GTTTATTGGGTGGATATGGT+GGG - Chr3:34248727-34248746 None:intergenic 40.0%
TACACCCTCAATCTTAGAAG+GGG + Chr3:34247955-34247974 MsG0380013279.01.T01:intron 40.0%
TACACTGCCATCTCCTTAAT+TGG - Chr3:34246885-34246904 None:intergenic 40.0%
TAGTCAGGTGTGACTACATT+TGG - Chr3:34249320-34249339 None:intergenic 40.0%
TATCCAAGCCAAAAGTTCTG+TGG - Chr3:34248664-34248683 None:intergenic 40.0%
TATGACCAATATGGCGAAGA+AGG + Chr3:34245918-34245937 MsG0380013279.01.T01:CDS 40.0%
TCCTTAGTAATCCCGTAAAG+CGG + Chr3:34245889-34245908 MsG0380013279.01.T01:intron 40.0%
TCTCCTCCAAATCCAATCAT+TGG + Chr3:34246628-34246647 MsG0380013279.01.T01:intron 40.0%
TGATTAAATGTGTGACCGAG+AGG + Chr3:34248527-34248546 MsG0380013279.01.T01:intron 40.0%
TGCCAATAACCAAACAACCA+GGG + Chr3:34249366-34249385 MsG0380013279.01.T01:CDS 40.0%
TGGATGGAAAAAAGGGACAA+AGG + Chr3:34249091-34249110 MsG0380013279.01.T01:CDS 40.0%
TGTATTTGATTCTCATGGCG+AGG + Chr3:34247808-34247827 MsG0380013279.01.T01:intron 40.0%
TGTCAACTAAACTGTTGACC+TGG + Chr3:34247078-34247097 MsG0380013279.01.T01:intron 40.0%
TGTTTATTGGGTGGATATGG+TGG - Chr3:34248728-34248747 None:intergenic 40.0%
TGTTTGGGAGTTAAGAAGGT+AGG + Chr3:34247632-34247651 MsG0380013279.01.T01:intron 40.0%
TTATTGGCATCCCTTCATTG+GGG - Chr3:34249355-34249374 None:intergenic 40.0%
TTCTTCACCTGATTCCTCAT+TGG + Chr3:34246657-34246676 MsG0380013279.01.T01:intron 40.0%
TTGACATCAAGTATCCCTCA+AGG + Chr3:34249414-34249433 MsG0380013279.01.T01:CDS 40.0%
TTTCCAGGCATAGTTGAGTT+TGG + Chr3:34248209-34248228 MsG0380013279.01.T01:intron 40.0%
! ACAACATTTCCCTTTTAGCC+TGG + Chr3:34247262-34247281 MsG0380013279.01.T01:intron 40.0%
! CAGTGTAGAATTTGAGATCC+TGG + Chr3:34246898-34246917 MsG0380013279.01.T01:intron 40.0%
! CATCTGCCACAGTTATCTTT+TGG - Chr3:34249235-34249254 None:intergenic 40.0%
!! ATCACCCCTTCTAAGATTGA+GGG - Chr3:34247962-34247981 None:intergenic 40.0%
!! ATTCCACAGAACTTTTGGCT+TGG + Chr3:34248658-34248677 MsG0380013279.01.T01:intron 40.0%
!! CAATTGCTTCCTTTGAAGCA+CGG + Chr3:34247482-34247501 MsG0380013279.01.T01:intron 40.0%
!! TTCGTGCTTTGGTTCTGTTT+GGG + Chr3:34247617-34247636 MsG0380013279.01.T01:intron 40.0%
!!! AGCCTCAATTCTTTTTCAGG+TGG - Chr3:34245832-34245851 None:intergenic 40.0%
!!! GCCTCAATTCTTTTTCAGGT+GGG - Chr3:34245831-34245850 None:intergenic 40.0%
AGAATCCTTCCATCCAAAGC+AGG - Chr3:34249284-34249303 None:intergenic 45.0%
AGATGGTTCAAACCCCAAGA+TGG + Chr3:34248018-34248037 MsG0380013279.01.T01:intron 45.0%
AGCACAAAGTCCCCAATGAA+GGG + Chr3:34249342-34249361 MsG0380013279.01.T01:CDS 45.0%
AGCAGCAGTATCTACCATCT+TGG - Chr3:34248035-34248054 None:intergenic 45.0%
CAATAACCAAACAACCAGGG+AGG + Chr3:34249369-34249388 MsG0380013279.01.T01:CDS 45.0%
CACGCTCGTTATACTAGGAA+TGG + Chr3:34249191-34249210 MsG0380013279.01.T01:CDS 45.0%
CAGCAGTATCTACCATCTTG+GGG - Chr3:34248033-34248052 None:intergenic 45.0%
CATTCTTCTTCTCGTTCTCG+CGG + Chr3:34245972-34245991 MsG0380013279.01.T01:CDS 45.0%
CTCCCTGGTTGTTTGGTTAT+TGG - Chr3:34249371-34249390 None:intergenic 45.0%
CTTGTCACCCTTCTCTTTGA+AGG - Chr3:34249120-34249139 None:intergenic 45.0%
GAAGAAGGTCTTCAATACGG+TGG + Chr3:34245933-34245952 MsG0380013279.01.T01:CDS 45.0%
GAAGACCTTCTTCGCCATAT+TGG - Chr3:34245926-34245945 None:intergenic 45.0%
GAATCCTTCCATCCAAAGCA+GGG - Chr3:34249283-34249302 None:intergenic 45.0%
GATGGTAGATACTGCTGCTA+AGG + Chr3:34248036-34248055 MsG0380013279.01.T01:intron 45.0%
GCAGCAGTATCTACCATCTT+GGG - Chr3:34248034-34248053 None:intergenic 45.0%
GGATTGGGAATGTAACAGTG+TGG + Chr3:34248144-34248163 MsG0380013279.01.T01:intron 45.0%
GGCGAAGAAGGTCTTCAATA+CGG + Chr3:34245930-34245949 MsG0380013279.01.T01:CDS 45.0%
GGTAGGATAAAAGAAGGCTC+TGG + Chr3:34247649-34247668 MsG0380013279.01.T01:intron 45.0%
GGTTATTGGCATCCCTTCAT+TGG - Chr3:34249357-34249376 None:intergenic 45.0%
GTGTGACTACATTTGGCAAC+TGG - Chr3:34249313-34249332 None:intergenic 45.0%
TCCGCTTTACGGGATTACTA+AGG - Chr3:34245893-34245912 None:intergenic 45.0%
TGCTGAGGAGTTAACCTTGA+GGG - Chr3:34249431-34249450 None:intergenic 45.0%
TTCAGGGACTTTCACAAACC+TGG - Chr3:34248365-34248384 None:intergenic 45.0%
TTCCTAGTATAACGAGCGTG+TGG - Chr3:34249191-34249210 None:intergenic 45.0%
TTGCTGAGGAGTTAACCTTG+AGG - Chr3:34249432-34249451 None:intergenic 45.0%
! AAAAGAAGGCTCTGGTGAGA+GGG + Chr3:34247657-34247676 MsG0380013279.01.T01:intron 45.0%
! AAATCCCTGCTTTGGATGGA+AGG + Chr3:34249276-34249295 MsG0380013279.01.T01:CDS 45.0%
! AACTGTTGACCTGGTGTCAA+CGG + Chr3:34247087-34247106 MsG0380013279.01.T01:intron 45.0%
! GGATATGGTGGGATATCCAT+TGG - Chr3:34248716-34248735 None:intergenic 45.0%
! TAAAAGAAGGCTCTGGTGAG+AGG + Chr3:34247656-34247675 MsG0380013279.01.T01:intron 45.0%
! TGTACAATGGGACTAGCAGA+AGG + Chr3:34246138-34246157 MsG0380013279.01.T01:CDS 45.0%
! TTGAAGTGACGACCCCTTTT+TGG + Chr3:34246349-34246368 MsG0380013279.01.T01:intron 45.0%
! TTGGAAATCCCTGCTTTGGA+TGG + Chr3:34249272-34249291 MsG0380013279.01.T01:CDS 45.0%
! TTTAAAGTTCCCTTCCTCCC+TGG - Chr3:34249386-34249405 None:intergenic 45.0%
! TTTCAGGTGGGTGTTTGTCT+GGG - Chr3:34245819-34245838 None:intergenic 45.0%
!! CATCACCCCTTCTAAGATTG+AGG - Chr3:34247963-34247982 None:intergenic 45.0%
!! CGGATGAGATTTGGTGTCAA+TGG - Chr3:34246465-34246484 None:intergenic 45.0%
!! CTTCCTTTGAAGCACGGATA+CGG + Chr3:34247488-34247507 MsG0380013279.01.T01:intron 45.0%
!! GTTCGTGCTTTGGTTCTGTT+TGG + Chr3:34247616-34247635 MsG0380013279.01.T01:intron 45.0%
!!! TTTTCAGGTGGGTGTTTGTC+TGG - Chr3:34245820-34245839 None:intergenic 45.0%
AACCAAACAACCAGGGAGGA+AGG + Chr3:34249373-34249392 MsG0380013279.01.T01:CDS 50.0%
ACCAAACAACCAGGGAGGAA+GGG + Chr3:34249374-34249393 MsG0380013279.01.T01:CDS 50.0%
ACCAAAGCACGAACACTCCT+CGG - Chr3:34247610-34247629 None:intergenic 50.0%
AGAAGAAGAATGCCGTGGAG+GGG - Chr3:34245964-34245983 None:intergenic 50.0%
AGTTAGGATCCGTTGACACC+AGG + Chr3:34246428-34246447 MsG0380013279.01.T01:intron 50.0%
AGTTAGGATCCGTTGACACC+AGG - Chr3:34246447-34246428 None:intergenic 50.0%
ATATCAGCTGGGATGATGCC+AGG - Chr3:34249146-34249165 None:intergenic 50.0%
CACCACACGCTCGTTATACT+AGG + Chr3:34249186-34249205 MsG0380013279.01.T01:CDS 50.0%
GAACGAGAAGAAGAATGCCG+TGG - Chr3:34245969-34245988 None:intergenic 50.0%
GAGAAGAAGAATGCCGTGGA+GGG - Chr3:34245965-34245984 None:intergenic 50.0%
GAGCACAAAGTCCCCAATGA+AGG + Chr3:34249341-34249360 MsG0380013279.01.T01:CDS 50.0%
GGGACTTTGTGCTCATAGTC+AGG - Chr3:34249335-34249354 None:intergenic 50.0%
GGTCCAAACTCAACTATGCC+TGG - Chr3:34248215-34248234 None:intergenic 50.0%
TATTAGTGGAGTCGGCGTGT+CGG - Chr3:34247517-34247536 None:intergenic 50.0%
TCAATGGTTTCGCTCACACC+TGG - Chr3:34246449-34246468 None:intergenic 50.0%
TGTCCGTATCCGTGCTTCAA+AGG - Chr3:34247494-34247513 None:intergenic 50.0%
! AAAGAAGGCTCTGGTGAGAG+GGG + Chr3:34247658-34247677 MsG0380013279.01.T01:intron 50.0%
!! ATATGTGTCGGTGTCGTGTC+GGG + Chr3:34247573-34247592 MsG0380013279.01.T01:intron 50.0%
!! GATATGTGTCGGTGTCGTGT+CGG + Chr3:34247572-34247591 MsG0380013279.01.T01:intron 50.0%
CGAGAAGAAGAATGCCGTGG+AGG - Chr3:34245966-34245985 None:intergenic 55.0%
GAGAAGGGTGACAAGAAGCC+TGG + Chr3:34249125-34249144 MsG0380013279.01.T01:CDS 55.0%
GAGAGGGGAGGCAAAGGAAT+GGG + Chr3:34247673-34247692 MsG0380013279.01.T01:intron 55.0%
GCACGAACACTCCTCGGATT+AGG - Chr3:34247604-34247623 None:intergenic 55.0%
TCCCTTCCTCCCTGGTTGTT+TGG - Chr3:34249378-34249397 None:intergenic 55.0%
TGAGAGGGGAGGCAAAGGAA+TGG + Chr3:34247672-34247691 MsG0380013279.01.T01:intron 55.0%
! TCGCTCACACCTGGTGTCAA+CGG - Chr3:34246440-34246459 None:intergenic 55.0%
!! TATGTGTCGGTGTCGTGTCG+GGG + Chr3:34247574-34247593 MsG0380013279.01.T01:intron 55.0%
!! TCCGAGGAGTGTTCGTGCTT+TGG + Chr3:34247606-34247625 MsG0380013279.01.T01:intron 55.0%
AGAAGAATGCCGTGGAGGGG+CGG - Chr3:34245961-34245980 None:intergenic 60.0%
GGGGAGGCAAAGGAATGGGA+AGG + Chr3:34247677-34247696 MsG0380013279.01.T01:intron 60.0%
TCTGGTGAGAGGGGAGGCAA+AGG + Chr3:34247667-34247686 MsG0380013279.01.T01:intron 60.0%
! GAAGGCTCTGGTGAGAGGGG+AGG + Chr3:34247661-34247680 MsG0380013279.01.T01:intron 65.0%
! GTCGGGGCACTCCTAATCCG+AGG + Chr3:34247590-34247609 MsG0380013279.01.T01:intron 65.0%
!! ACGGTGGTGCCGCCCCTCCA+CGG + Chr3:34245949-34245968 MsG0380013279.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 34245727 34249481 34245727 ID=MsG0380013279.01;Name=MsG0380013279.01
Chr3 mRNA 34245727 34249481 34245727 ID=MsG0380013279.01.T01;Parent=MsG0380013279.01;Name=MsG0380013279.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|3|0|265
Chr3 exon 34245727 34245801 34245727 ID=MsG0380013279.01.T01:exon:5854;Parent=MsG0380013279.01.T01
Chr3 exon 34245909 34246195 34245909 ID=MsG0380013279.01.T01:exon:5853;Parent=MsG0380013279.01.T01
Chr3 exon 34249046 34249481 34249046 ID=MsG0380013279.01.T01:exon:5852;Parent=MsG0380013279.01.T01
Chr3 CDS 34245727 34245801 34245727 ID=MsG0380013279.01.T01:cds;Parent=MsG0380013279.01.T01
Chr3 CDS 34245909 34246195 34245909 ID=MsG0380013279.01.T01:cds;Parent=MsG0380013279.01.T01
Chr3 CDS 34249046 34249481 34249046 ID=MsG0380013279.01.T01:cds;Parent=MsG0380013279.01.T01
Gene Sequence

>MsG0380013279.01.T01

ATGGATTACTACAACGTTTTAAAAGTGAACAGAAACGCAACAGAAGAAGAATTAAGAACATCTTACAAAAGACTACGGAAAATCTATGACCAATATGGCGAAGAAGGTCTTCAATACGGTGGTGCCGCCCCTCCACGGCATTCTTCTTCTCGTTCTCGCGGTAACGCTCCATCTTCATCTTCAGATTATCAGTATAATCATCGCTCTGCTGATGATATTTACAATGATTTCTTTGGTCGTGAGAATGGTTTTGCAAAGAAGGATGATCCTATTGTGAGAACATTGTTTTGCAGTCTTGAAGAATTGTACAATGGGACTAGCAGAAGGATAAAGATTACCAGAACCGTAGTTAATCATGCTGGGTATAGTAATATTGAGGAGGAGGTGTTGACTATTGATGTAAAAGCTGGATGGAAAAAAGGGACAAAGGTTACCTTCAAAGAGAAGGGTGACAAGAAGCCTGGCATCATCCCAGCTGATATTATTTTTGTGATTGACGAGACACCACACGCTCGTTATACTAGGAATGGAAATGATCTTGTGATTATCCAAAAGATAACTGTGGCAGATGCTCTCACAAATAAAACATTGGAAATCCCTGCTTTGGATGGAAGGATTCTTTTTGTCCAGTTGCCAAATGTAGTCACACCTGACTATGAGCACAAAGTCCCCAATGAAGGGATGCCAATAACCAAACAACCAGGGAGGAAGGGAACTTTAAAAATCAAATTTGACATCAAGTATCCCTCAAGGTTAACTCCTCAGCAAAAATCTGATCTAAGGAGTGTCTTACGTTGA
Protein sequence

>MsG0380013279.01.T01

MDYYNVLKVNRNATEEELRTSYKRLRKIYDQYGEEGLQYGGAAPPRHSSSRSRGNAPSSSSDYQYNHRSADDIYNDFFGRENGFAKKDDPIVRTLFCSLEELYNGTSRRIKITRTVVNHAGYSNIEEEVLTIDVKAGWKKGTKVTFKEKGDKKPGIIPADIIFVIDETPHARYTRNGNDLVIIQKITVADALTNKTLEIPALDGRILFVQLPNVVTPDYEHKVPNEGMPITKQPGRKGTLKIKFDIKYPSRLTPQQKSDLRSVLR*