Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013642.01.T01 | XP_024634325.1 | 91.231 | 593 | 43 | 3 | 1 | 593 | 1 | 584 | 0 | 1108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013642.01.T01 | Q9SKI4 | 61.618 | 482 | 164 | 5 | 111 | 590 | 178 | 640 | 0 | 606 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013642.01.T01 | A0A396IQR2 | 91.231 | 593 | 43 | 3 | 1 | 593 | 1 | 584 | 0.0 | 1108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013642.01 | MsG0680030350.01 | 0.801104 | 1.053748e-48 | 4.990448e-46 |
| MsG0380013642.01 | MsG0780041387.01 | 0.806436 | 8.235521e-50 | 4.469726e-47 |
| MsG0380013642.01 | MsG0880042065.01 | 0.808172 | 3.529530e-50 | 2.004126e-47 |
| MsG0280008738.01 | MsG0380013642.01 | 0.805059 | 1.602563e-49 | 8.396377e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013642.01.T01 | MTR_3g047950 | 91.216 | 592 | 43 | 3 | 1 | 592 | 1 | 583 | 0.0 | 1106 |
| MsG0380013642.01.T01 | MTR_2g041270 | 65.736 | 645 | 150 | 5 | 1 | 593 | 1 | 626 | 0.0 | 841 |
| MsG0380013642.01.T01 | MTR_4g109580 | 33.121 | 471 | 280 | 8 | 129 | 591 | 171 | 614 | 8.48e-75 | 250 |
| MsG0380013642.01.T01 | MTR_4g109580 | 35.732 | 403 | 224 | 8 | 129 | 523 | 171 | 546 | 3.55e-69 | 234 |
| MsG0380013642.01.T01 | MTR_4g109590 | 23.473 | 311 | 170 | 8 | 294 | 587 | 5 | 264 | 1.07e-16 | 80.9 |
| MsG0380013642.01.T01 | MTR_6g052340 | 27.679 | 224 | 141 | 10 | 171 | 384 | 42 | 254 | 2.91e-12 | 70.1 |
| MsG0380013642.01.T01 | MTR_5g027390 | 22.713 | 317 | 213 | 9 | 245 | 554 | 103 | 394 | 9.87e-12 | 67.8 |
| MsG0380013642.01.T01 | MTR_4g070090 | 23.344 | 317 | 211 | 10 | 245 | 554 | 135 | 426 | 1.01e-11 | 67.8 |
| MsG0380013642.01.T01 | MTR_5g078250 | 23.684 | 304 | 191 | 11 | 142 | 422 | 18 | 303 | 1.20e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013642.01.T01 | AT2G06510 | 61.618 | 482 | 164 | 5 | 111 | 590 | 178 | 640 | 0.0 | 606 |
| MsG0380013642.01.T01 | AT2G06510 | 48.305 | 118 | 61 | 0 | 1 | 118 | 1 | 118 | 5.62e-26 | 113 |
| MsG0380013642.01.T01 | AT2G06510 | 61.618 | 482 | 164 | 5 | 111 | 590 | 155 | 617 | 0.0 | 605 |
| MsG0380013642.01.T01 | AT2G06510 | 44.086 | 93 | 52 | 0 | 26 | 118 | 3 | 95 | 1.17e-16 | 84.0 |
| MsG0380013642.01.T01 | AT5G45400 | 52.743 | 474 | 202 | 6 | 120 | 592 | 289 | 741 | 2.82e-179 | 529 |
| MsG0380013642.01.T01 | AT5G45400 | 33.613 | 119 | 72 | 2 | 1 | 112 | 1 | 119 | 3.90e-12 | 69.7 |
| MsG0380013642.01.T01 | AT4G19130 | 51.899 | 474 | 207 | 5 | 120 | 592 | 219 | 672 | 5.50e-176 | 518 |
| MsG0380013642.01.T01 | AT4G19130 | 30.120 | 166 | 102 | 3 | 1 | 152 | 2 | 167 | 1.54e-13 | 74.3 |
| MsG0380013642.01.T01 | AT4G19130 | 51.899 | 474 | 207 | 5 | 120 | 592 | 218 | 671 | 6.48e-176 | 518 |
| MsG0380013642.01.T01 | AT4G19130 | 30.120 | 166 | 102 | 3 | 1 | 152 | 1 | 166 | 1.58e-13 | 74.3 |
| MsG0380013642.01.T01 | AT5G08020 | 31.122 | 588 | 341 | 12 | 42 | 592 | 41 | 601 | 5.20e-86 | 280 |
| MsG0380013642.01.T01 | AT5G61000 | 29.575 | 612 | 337 | 13 | 42 | 589 | 41 | 622 | 1.66e-71 | 242 |
Find 147 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTATCGTTGATGTTAT+TGG | 0.200567 | 3:+42546529 | MsG0380013642.01.T01:CDS |
| GATGGCCCACCTACCCTTAT+AGG | 0.227751 | 3:-42546137 | None:intergenic |
| AAGCGATGAGCCATACATTT+TGG | 0.240685 | 3:+42547501 | MsG0380013642.01.T01:exon |
| AGCTGCTTTACATCCCTATA+AGG | 0.257100 | 3:+42546123 | MsG0380013642.01.T01:CDS |
| TGAAGTAACCCTTGCCTTGA+TGG | 0.260556 | 3:-42546155 | None:intergenic |
| ACACTATCGTTGATGTTATT+GGG | 0.268045 | 3:+42546530 | MsG0380013642.01.T01:CDS |
| ATTTCTAAAGACATTTCTTA+TGG | 0.283964 | 3:+42546889 | MsG0380013642.01.T01:CDS |
| ATGCATTGGAAATGCGTAAA+AGG | 0.292846 | 3:+42546596 | MsG0380013642.01.T01:CDS |
| CTCTGAGCCTCAGGGAAATC+TGG | 0.295092 | 3:-42546817 | None:intergenic |
| CTTCACCACATAATTCCTTT+TGG | 0.300877 | 3:-42547389 | None:intergenic |
| GTCCTTGATTCTCAAATCAT+TGG | 0.301335 | 3:+42546031 | MsG0380013642.01.T01:CDS |
| TAAAACATTTGAAGATTGAT+TGG | 0.308074 | 3:+42546392 | MsG0380013642.01.T01:CDS |
| TTGAATCTAAAGGACAATTC+TGG | 0.331057 | 3:+42546622 | MsG0380013642.01.T01:CDS |
| CAAATCAAAGATGAAGGTTT+GGG | 0.336545 | 3:+42546946 | MsG0380013642.01.T01:CDS |
| GAGTGTTGAGCTAACACTTT+GGG | 0.337774 | 3:+42546648 | MsG0380013642.01.T01:CDS |
| CCATCTTGTGTTTACTGACT+TGG | 0.339272 | 3:-42547127 | None:intergenic |
| TCTGACGGAGAACGCTATTC+CGG | 0.351179 | 3:+42545220 | MsG0380013642.01.T01:CDS |
| GGTGAAGATTATAGTAGTTA+AGG | 0.358617 | 3:+42547419 | MsG0380013642.01.T01:CDS |
| TCTTCAATCAGTTTGTGTTT+AGG | 0.362123 | 3:+42547358 | MsG0380013642.01.T01:CDS |
| ATAAGAAATGTCTTTAGAAA+TGG | 0.365475 | 3:-42546887 | None:intergenic |
| AAGGCCTTTGCATATCCTTC+AGG | 0.370413 | 3:-42546205 | None:intergenic |
| GAAGTTGGGGAAGACATTAT+AGG | 0.375381 | 3:+42547255 | MsG0380013642.01.T01:CDS |
| TCCCTGAGGCTCAGAGCTTA+AGG | 0.379127 | 3:+42546824 | MsG0380013642.01.T01:CDS |
| TCAAATCAAAGATGAAGGTT+TGG | 0.380638 | 3:+42546945 | MsG0380013642.01.T01:CDS |
| ATGGCCCACCTACCCTTATA+GGG | 0.381809 | 3:-42546136 | None:intergenic |
| GGTATAGAACCATCCTCATC+TGG | 0.382261 | 3:-42546454 | None:intergenic |
| TTTGATGTTCTTGATTCTGA+TGG | 0.383348 | 3:+42546232 | MsG0380013642.01.T01:CDS |
| CTATGCATAAATTCTCCTTC+AGG | 0.385350 | 3:+42546476 | MsG0380013642.01.T01:CDS |
| ACAGCTTGCCCTGTCATGAT+TGG | 0.389639 | 3:+42547045 | MsG0380013642.01.T01:CDS |
| TCTGAATCCACAAATGACTT+TGG | 0.391436 | 3:-42546058 | None:intergenic |
| GCCCTCGTTGTTATCCAGTC+TGG | 0.393572 | 3:-42546985 | None:intergenic |
| AGCCTTAAGCTCTGAGCCTC+AGG | 0.394999 | 3:-42546826 | None:intergenic |
| AGTTTGATGTTTGCGAATAT+CGG | 0.395742 | 3:+42547172 | MsG0380013642.01.T01:CDS |
| TCCTTGATTCTCAAATCATT+GGG | 0.399197 | 3:+42546032 | MsG0380013642.01.T01:CDS |
| CCCAGCCTTTACTGCCAAAA+CGG | 0.404114 | 3:-42546731 | None:intergenic |
| AAGGCAAGGGTTACTTCAAA+AGG | 0.405964 | 3:+42546160 | MsG0380013642.01.T01:CDS |
| AGTCGGAACCGGACGAGTTA+AGG | 0.408313 | 3:+42545403 | MsG0380013642.01.T01:CDS |
| AAGTTGGGGAAGACATTATA+GGG | 0.411436 | 3:+42547256 | MsG0380013642.01.T01:CDS |
| AAAACATTTGAAGATTGATT+GGG | 0.425563 | 3:+42546393 | MsG0380013642.01.T01:CDS |
| AAACCGTTGGTTCAAGTTCT+CGG | 0.426463 | 3:+42545269 | MsG0380013642.01.T01:CDS |
| TATAGTAGTTAAGGCAGATA+AGG | 0.431630 | 3:+42547428 | MsG0380013642.01.T01:CDS |
| TGTTACATCTGTGAATTCTT+CGG | 0.431863 | 3:+42546555 | MsG0380013642.01.T01:CDS |
| TGGGAATCCAAAGTCATTTG+TGG | 0.432048 | 3:+42546051 | MsG0380013642.01.T01:CDS |
| AGGCTCAGAGCTTAAGGCTC+TGG | 0.436157 | 3:+42546830 | MsG0380013642.01.T01:CDS |
| ATCAGTCTTCATGAATGATA+TGG | 0.443821 | 3:-42547010 | None:intergenic |
| TTTGGGGTGAGTTATGCAAC+AGG | 0.447586 | 3:+42546665 | MsG0380013642.01.T01:CDS |
| CTCAACGACGGAGTCGGAAC+CGG | 0.449166 | 3:+42545392 | MsG0380013642.01.T01:CDS |
| TCCCAATGATTTGAGAATCA+AGG | 0.450822 | 3:-42546033 | None:intergenic |
| CCAGCCTTTACTGCCAAAAC+GGG | 0.452430 | 3:-42546730 | None:intergenic |
| AGTTGAGCAGCGATTGTGGC+GGG | 0.456317 | 3:-42545371 | None:intergenic |
| GGCGCACGGACAAGCCAGAC+TGG | 0.466739 | 3:+42546971 | MsG0380013642.01.T01:CDS |
| ATCCTTCAGGACTGTTATAG+TGG | 0.466767 | 3:-42546192 | None:intergenic |
| TAACTGCTTTCAATGAAGTT+GGG | 0.473301 | 3:+42547241 | MsG0380013642.01.T01:CDS |
| CTGAAAGATATTGTGGATGC+TGG | 0.474645 | 3:+42546700 | MsG0380013642.01.T01:CDS |
| GCTGCTTTACATCCCTATAA+GGG | 0.475343 | 3:+42546124 | MsG0380013642.01.T01:CDS |
| AATAAGAAAGTGACTAGGTC+TGG | 0.475345 | 3:+42547081 | MsG0380013642.01.T01:CDS |
| GGCTCTGGTTTGATCAAGAC+GGG | 0.476136 | 3:+42546845 | MsG0380013642.01.T01:CDS |
| TAGGGATGTAAAGCAGCTAT+TGG | 0.476979 | 3:-42546118 | None:intergenic |
| GTAACTGCTTTCAATGAAGT+TGG | 0.484321 | 3:+42547240 | MsG0380013642.01.T01:CDS |
| TATGTCAAGGGAAAATGCAT+TGG | 0.492128 | 3:+42546582 | MsG0380013642.01.T01:CDS |
| GGAACCTTCCTTAACTCGTC+CGG | 0.499652 | 3:-42545411 | None:intergenic |
| CACTATCGTTGATGTTATTG+GGG | 0.506750 | 3:+42546531 | MsG0380013642.01.T01:CDS |
| TTCTGATGGAGGTGAAATAC+AGG | 0.518205 | 3:+42546246 | MsG0380013642.01.T01:CDS |
| TTCTATGAAGCGATCGAGGT+CGG | 0.521417 | 3:+42546298 | MsG0380013642.01.T01:CDS |
| CGTCGATCTCCAATCATGAC+AGG | 0.521837 | 3:-42547054 | None:intergenic |
| GCTCAAATCGTGGATCATAC+AGG | 0.521915 | 3:+42547207 | MsG0380013642.01.T01:CDS |
| TGAATTACTCTGCAGAGAGC+AGG | 0.522635 | 3:+42547451 | MsG0380013642.01.T01:CDS |
| TGCAGTAATGCCAAAATGTA+TGG | 0.526337 | 3:-42547511 | None:intergenic |
| GTTTAGGCTGAAAATCCAAA+AGG | 0.532514 | 3:+42547374 | MsG0380013642.01.T01:CDS |
| GATGTTCTTGATTCTGATGG+AGG | 0.533135 | 3:+42546235 | MsG0380013642.01.T01:CDS |
| TAAGGGTAGGTGGGCCATCA+AGG | 0.533438 | 3:+42546141 | MsG0380013642.01.T01:CDS |
| TATGATCCACGATTTGAGCT+TGG | 0.535896 | 3:-42547203 | None:intergenic |
| ATTCTTCGGTTCTTATGTCA+AGG | 0.539606 | 3:+42546569 | MsG0380013642.01.T01:CDS |
| ACAAGAGCTGAAAGATATTG+TGG | 0.542277 | 3:+42546693 | MsG0380013642.01.T01:CDS |
| CACTTTCTATGAAGCGATCG+AGG | 0.543739 | 3:+42546294 | MsG0380013642.01.T01:CDS |
| GTATCTCAAATCAAAGATGA+AGG | 0.544220 | 3:+42546940 | MsG0380013642.01.T01:CDS |
| AAAGTTTACTTGATATCGAA+AGG | 0.544592 | 3:+42546322 | MsG0380013642.01.T01:CDS |
| CCAAGTCAGTAAACACAAGA+TGG | 0.546487 | 3:+42547127 | MsG0380013642.01.T01:CDS |
| TGAAAGATATTGTGGATGCT+GGG | 0.547047 | 3:+42546701 | MsG0380013642.01.T01:CDS |
| GTAGGTGGGCCATCAAGGCA+AGG | 0.549490 | 3:+42546146 | MsG0380013642.01.T01:CDS |
| TTCTTCGGTTCTTATGTCAA+GGG | 0.550578 | 3:+42546570 | MsG0380013642.01.T01:CDS |
| TACATCCCTATAAGGGTAGG+TGG | 0.551806 | 3:+42546131 | MsG0380013642.01.T01:CDS |
| GGAGTGTTGAGCTAACACTT+TGG | 0.553058 | 3:+42546647 | MsG0380013642.01.T01:CDS |
| TAGTGTTTATAGACTTTCCA+CGG | 0.553340 | 3:-42546768 | None:intergenic |
| TCTAAAGACATTTCTTATGG+AGG | 0.557896 | 3:+42546892 | MsG0380013642.01.T01:CDS |
| AGGCAAGGGTTACTTCAAAA+GGG | 0.560722 | 3:+42546161 | MsG0380013642.01.T01:CDS |
| ATCTAAAGGACAATTCTGGC+AGG | 0.563853 | 3:+42546626 | MsG0380013642.01.T01:CDS |
| TTTGGCAGTAAAGGCTGGGA+AGG | 0.564040 | 3:+42546735 | MsG0380013642.01.T01:CDS |
| AGGCTCTGGTTTGATCAAGA+CGG | 0.564968 | 3:+42546844 | MsG0380013642.01.T01:CDS |
| GTATGCGTTCAAGTATGAGC+AGG | 0.566709 | 3:+42547296 | MsG0380013642.01.T01:CDS |
| AACTGCTTTCAATGAAGTTG+GGG | 0.570671 | 3:+42547242 | MsG0380013642.01.T01:CDS |
| CGACGTTGATGCAAAACCGT+TGG | 0.573290 | 3:+42545256 | MsG0380013642.01.T01:CDS |
| AAAATCCAAAAGGAATTATG+TGG | 0.573370 | 3:+42547384 | MsG0380013642.01.T01:CDS |
| TTCATTGAAAGCAGTTACAC+AGG | 0.574380 | 3:-42547235 | None:intergenic |
| GAGCTTTGCCCAGATGAGGA+TGG | 0.576130 | 3:+42546445 | MsG0380013642.01.T01:CDS |
| CACCATGTCTGTTAATCTGA+CGG | 0.576476 | 3:+42545205 | MsG0380013642.01.T01:exon |
| ATTCGCAAACATCAAACTCC+TGG | 0.578077 | 3:-42547167 | None:intergenic |
| CGCCACTATAACAGTCCTGA+AGG | 0.578123 | 3:+42546190 | MsG0380013642.01.T01:CDS |
| GTTGAGTTGAGCAGCGATTG+TGG | 0.580143 | 3:-42545375 | None:intergenic |
| GCTCAACTCAACGACGGAGT+CGG | 0.581308 | 3:+42545386 | MsG0380013642.01.T01:CDS |
| GAGTTGAGCAGCGATTGTGG+CGG | 0.583546 | 3:-42545372 | None:intergenic |
| CTCCGTCAGATTAACAGACA+TGG | 0.585298 | 3:-42545207 | None:intergenic |
| ATTATGTGGTGAAGAACAGA+AGG | 0.589091 | 3:+42547398 | MsG0380013642.01.T01:CDS |
| GTATAGAACCATCCTCATCT+GGG | 0.589876 | 3:-42546453 | None:intergenic |
| ACGTCGCCGTTGATTATCGC+CGG | 0.591911 | 3:-42545239 | None:intergenic |
| TAGGTGGGCCATCAAGGCAA+GGG | 0.604948 | 3:+42546147 | MsG0380013642.01.T01:CDS |
| CTGAAGGAGAATTTATGCAT+AGG | 0.605361 | 3:-42546475 | None:intergenic |
| AATGTCACTGATAGACCTGA+AGG | 0.611334 | 3:-42546491 | None:intergenic |
| GCTATTCCGGCGATAATCAA+CGG | 0.611686 | 3:+42545233 | MsG0380013642.01.T01:CDS |
| CTTTACATCCCTATAAGGGT+AGG | 0.612856 | 3:+42546128 | MsG0380013642.01.T01:CDS |
| GCCTTAAGCTCTGAGCCTCA+GGG | 0.614382 | 3:-42546825 | None:intergenic |
| ATCAAGAACATCAAACGAGA+AGG | 0.615433 | 3:-42546224 | None:intergenic |
| GATTTGAGAATCAAGGACAA+TGG | 0.618634 | 3:-42546026 | None:intergenic |
| TGTTGAGCTTTGCCCAGATG+AGG | 0.618641 | 3:+42546441 | MsG0380013642.01.T01:CDS |
| ATGCCGAGAACTTGAACCAA+CGG | 0.619456 | 3:-42545272 | None:intergenic |
| AAATCAAAGATGAAGGTTTG+GGG | 0.622043 | 3:+42546947 | MsG0380013642.01.T01:CDS |
| GTTGAGCAGCGATTGTGGCG+GGG | 0.624409 | 3:-42545370 | None:intergenic |
| ATGAGCAGGAGGATGATGAG+AGG | 0.625683 | 3:+42547310 | MsG0380013642.01.T01:CDS |
| TGCGTTCAAGTATGAGCAGG+AGG | 0.626441 | 3:+42547299 | MsG0380013642.01.T01:CDS |
| GATTATTATAGTTCATAACA+TGG | 0.627150 | 3:+42546000 | MsG0380013642.01.T01:CDS |
| ATCAAAGATGAAGGTTTGGG+GGG | 0.636147 | 3:+42546949 | MsG0380013642.01.T01:CDS |
| CAGTCCTGAAGGATATGCAA+AGG | 0.636237 | 3:+42546201 | MsG0380013642.01.T01:CDS |
| GTTTACTTGATATCGAAAGG+TGG | 0.638468 | 3:+42546325 | MsG0380013642.01.T01:CDS |
| CTGTCATGATTGGAGATCGA+CGG | 0.639396 | 3:+42547055 | MsG0380013642.01.T01:CDS |
| ACATCCCTATAAGGGTAGGT+GGG | 0.640512 | 3:+42546132 | MsG0380013642.01.T01:CDS |
| CATTCTCCAAGCTCAAATCG+TGG | 0.649686 | 3:+42547197 | MsG0380013642.01.T01:CDS |
| GGGAAGGTTAATGAATTCCG+TGG | 0.653840 | 3:+42546751 | MsG0380013642.01.T01:CDS |
| GAAAGATATTGTGGATGCTG+GGG | 0.656330 | 3:+42546702 | MsG0380013642.01.T01:CDS |
| GGTGAGTTATGCAACAGGGA+AGG | 0.659690 | 3:+42546670 | MsG0380013642.01.T01:CDS |
| AAAGATATTGTGGATGCTGG+GGG | 0.659910 | 3:+42546703 | MsG0380013642.01.T01:CDS |
| TATCATCTGAAACTTTCCGA+CGG | 0.667074 | 3:+42545335 | MsG0380013642.01.T01:CDS |
| AATCAAAGATGAAGGTTTGG+GGG | 0.672090 | 3:+42546948 | MsG0380013642.01.T01:CDS |
| GTCGATCTCCAATCATGACA+GGG | 0.673698 | 3:-42547053 | None:intergenic |
| GAAGTGTGATAGATGCAACC+AGG | 0.676040 | 3:+42547149 | MsG0380013642.01.T01:CDS |
| TCAAAGATGAAGGTTTGGGG+GGG | 0.676329 | 3:+42546950 | MsG0380013642.01.T01:CDS |
| ATCGCTGCTCAACTCAACGA+CGG | 0.679136 | 3:+42545380 | MsG0380013642.01.T01:CDS |
| GGAACCGGACGAGTTAAGGA+AGG | 0.685735 | 3:+42545407 | MsG0380013642.01.T01:CDS |
| TAAACACTATTCCTACTACA+CGG | 0.686518 | 3:+42546782 | MsG0380013642.01.T01:CDS |
| GTAATCGAGAAGCTGAACGA+TGG | 0.689240 | 3:-42545432 | None:intergenic |
| GGGGTGAGAATAAACTCCGT+CGG | 0.692381 | 3:-42545351 | None:intergenic |
| GCCAGACTGGATAACAACGA+GGG | 0.693539 | 3:+42546984 | MsG0380013642.01.T01:CDS |
| CGTCAGATTAACAGACATGG+TGG | 0.703230 | 3:-42545204 | None:intergenic |
| GGTGCAATAAGAAAGTGACT+AGG | 0.703575 | 3:+42547076 | MsG0380013642.01.T01:CDS |
| AGTGTTGAGCTAACACTTTG+GGG | 0.710248 | 3:+42546649 | MsG0380013642.01.T01:CDS |
| TTGGGGTGAGTTATGCAACA+GGG | 0.727581 | 3:+42546666 | MsG0380013642.01.T01:CDS |
| TGTAAATCCAGATTTCCCTG+AGG | 0.727629 | 3:+42546810 | MsG0380013642.01.T01:CDS |
| AGCCAGACTGGATAACAACG+AGG | 0.767019 | 3:+42546983 | MsG0380013642.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGTAAAATAATCATCAAA+AGG | - | Chr3:42545740-42545759 | None:intergenic | 15.0% |
| !!! | TAATTTTTAGTGTGAAAATT+AGG | + | Chr3:42545920-42545939 | MsG0380013642.01.T01:intron | 15.0% |
| !!! | TTGATGATTATTTTACATTT+TGG | + | Chr3:42545741-42545760 | MsG0380013642.01.T01:intron | 15.0% |
| !! | AAAACATTTGAAGATTGATT+GGG | + | Chr3:42546393-42546412 | MsG0380013642.01.T01:CDS | 20.0% |
| !! | GAAGATTAAAAATTACAACA+TGG | - | Chr3:42545619-42545638 | None:intergenic | 20.0% |
| !! | GATTATTATAGTTCATAACA+TGG | + | Chr3:42546000-42546019 | MsG0380013642.01.T01:CDS | 20.0% |
| !! | TAAAACATTTGAAGATTGAT+TGG | + | Chr3:42546392-42546411 | MsG0380013642.01.T01:CDS | 20.0% |
| !!! | ATAAGAAATGTCTTTAGAAA+TGG | - | Chr3:42546890-42546909 | None:intergenic | 20.0% |
| !!! | ATTTCTAAAGACATTTCTTA+TGG | + | Chr3:42546889-42546908 | MsG0380013642.01.T01:CDS | 20.0% |
| !!! | CAAATGTTTTAAATCTATTG+AGG | - | Chr3:42546383-42546402 | None:intergenic | 20.0% |
| !!! | GTGAAGTTAAAACTTAATTT+TGG | + | Chr3:42545845-42545864 | MsG0380013642.01.T01:intron | 20.0% |
| !!! | TAAAAGGATTTTGAATCTAA+AGG | + | Chr3:42546612-42546631 | MsG0380013642.01.T01:CDS | 20.0% |
| !!! | TGAAGTTTTAGGTTTAAAAT+TGG | - | Chr3:42545710-42545729 | None:intergenic | 20.0% |
| ! | AAAATCCAAAAGGAATTATG+TGG | + | Chr3:42547384-42547403 | MsG0380013642.01.T01:CDS | 25.0% |
| ! | AAAGTTTACTTGATATCGAA+AGG | + | Chr3:42546322-42546341 | MsG0380013642.01.T01:CDS | 25.0% |
| ! | AACTATAATAATCCTGTACA+AGG | - | Chr3:42545993-42546012 | None:intergenic | 25.0% |
| !! | AAGGACTATAATGAAGTTTT+AGG | - | Chr3:42545721-42545740 | None:intergenic | 25.0% |
| AAATCAAAGATGAAGGTTTG+GGG | + | Chr3:42546947-42546966 | MsG0380013642.01.T01:CDS | 30.0% | |
| AACACTATCGTTGATGTTAT+TGG | + | Chr3:42546529-42546548 | MsG0380013642.01.T01:CDS | 30.0% | |
| ACACTATCGTTGATGTTATT+GGG | + | Chr3:42546530-42546549 | MsG0380013642.01.T01:CDS | 30.0% | |
| AGTTTGATGTTTGCGAATAT+CGG | + | Chr3:42547172-42547191 | MsG0380013642.01.T01:CDS | 30.0% | |
| ATCAGTCTTCATGAATGATA+TGG | - | Chr3:42547013-42547032 | None:intergenic | 30.0% | |
| CAAATCAAAGATGAAGGTTT+GGG | + | Chr3:42546946-42546965 | MsG0380013642.01.T01:CDS | 30.0% | |
| CACACTAAAAATTAAGCCAA+GGG | - | Chr3:42545914-42545933 | None:intergenic | 30.0% | |
| GGTGAAGATTATAGTAGTTA+AGG | + | Chr3:42547419-42547438 | MsG0380013642.01.T01:CDS | 30.0% | |
| GTAAAAGAAAGATTACGTCA+TGG | - | Chr3:42545771-42545790 | None:intergenic | 30.0% | |
| GTATCTCAAATCAAAGATGA+AGG | + | Chr3:42546940-42546959 | MsG0380013642.01.T01:CDS | 30.0% | |
| TAAACACTATTCCTACTACA+CGG | + | Chr3:42546782-42546801 | MsG0380013642.01.T01:CDS | 30.0% | |
| TAACTGCTTTCAATGAAGTT+GGG | + | Chr3:42547241-42547260 | MsG0380013642.01.T01:CDS | 30.0% | |
| TAGTGTTTATAGACTTTCCA+CGG | - | Chr3:42546771-42546790 | None:intergenic | 30.0% | |
| TATAGTAGTTAAGGCAGATA+AGG | + | Chr3:42547428-42547447 | MsG0380013642.01.T01:CDS | 30.0% | |
| TCAAATCAAAGATGAAGGTT+TGG | + | Chr3:42546945-42546964 | MsG0380013642.01.T01:CDS | 30.0% | |
| TCACACTAAAAATTAAGCCA+AGG | - | Chr3:42545915-42545934 | None:intergenic | 30.0% | |
| TCCTTGATTCTCAAATCATT+GGG | + | Chr3:42546032-42546051 | MsG0380013642.01.T01:CDS | 30.0% | |
| TCTAAAGACATTTCTTATGG+AGG | + | Chr3:42546892-42546911 | MsG0380013642.01.T01:CDS | 30.0% | |
| TCTTCAATCAGTTTGTGTTT+AGG | + | Chr3:42547358-42547377 | MsG0380013642.01.T01:CDS | 30.0% | |
| TGTTACATCTGTGAATTCTT+CGG | + | Chr3:42546555-42546574 | MsG0380013642.01.T01:CDS | 30.0% | |
| TTAAGTTTCTTTGTATCCCT+TGG | + | Chr3:42545895-42545914 | MsG0380013642.01.T01:intron | 30.0% | |
| TTGAATCTAAAGGACAATTC+TGG | + | Chr3:42546622-42546641 | MsG0380013642.01.T01:CDS | 30.0% | |
| TTTGATGTTCTTGATTCTGA+TGG | + | Chr3:42546232-42546251 | MsG0380013642.01.T01:CDS | 30.0% | |
| ! | GTTTCTTCATTTTCTACAGT+TGG | - | Chr3:42546088-42546107 | None:intergenic | 30.0% |
| !! | AAATTACGTACTTTTGAGTC+AGG | - | Chr3:42545472-42545491 | None:intergenic | 30.0% |
| !! | TGTTTTAAATCTATTGAGGC+AGG | - | Chr3:42546379-42546398 | None:intergenic | 30.0% |
| AACTGCTTTCAATGAAGTTG+GGG | + | Chr3:42547242-42547261 | MsG0380013642.01.T01:CDS | 35.0% | |
| AAGTTGGGGAAGACATTATA+GGG | + | Chr3:42547256-42547275 | MsG0380013642.01.T01:CDS | 35.0% | |
| AATAAGAAAGTGACTAGGTC+TGG | + | Chr3:42547081-42547100 | MsG0380013642.01.T01:CDS | 35.0% | |
| AATCAAAGATGAAGGTTTGG+GGG | + | Chr3:42546948-42546967 | MsG0380013642.01.T01:CDS | 35.0% | |
| ACAAGAGCTGAAAGATATTG+TGG | + | Chr3:42546693-42546712 | MsG0380013642.01.T01:CDS | 35.0% | |
| ATCAAGAACATCAAACGAGA+AGG | - | Chr3:42546227-42546246 | None:intergenic | 35.0% | |
| ATGCATTGGAAATGCGTAAA+AGG | + | Chr3:42546596-42546615 | MsG0380013642.01.T01:CDS | 35.0% | |
| ATTATGTGGTGAAGAACAGA+AGG | + | Chr3:42547398-42547417 | MsG0380013642.01.T01:CDS | 35.0% | |
| ATTCTTCGGTTCTTATGTCA+AGG | + | Chr3:42546569-42546588 | MsG0380013642.01.T01:CDS | 35.0% | |
| CACTATCGTTGATGTTATTG+GGG | + | Chr3:42546531-42546550 | MsG0380013642.01.T01:CDS | 35.0% | |
| CTATGCATAAATTCTCCTTC+AGG | + | Chr3:42546476-42546495 | MsG0380013642.01.T01:CDS | 35.0% | |
| CTGAAGGAGAATTTATGCAT+AGG | - | Chr3:42546478-42546497 | None:intergenic | 35.0% | |
| GATTTGAGAATCAAGGACAA+TGG | - | Chr3:42546029-42546048 | None:intergenic | 35.0% | |
| GGAAAAACAAACTCAGAACT+CGG | - | Chr3:42545972-42545991 | None:intergenic | 35.0% | |
| GTAACTGCTTTCAATGAAGT+TGG | + | Chr3:42547240-42547259 | MsG0380013642.01.T01:CDS | 35.0% | |
| GTCCTTGATTCTCAAATCAT+TGG | + | Chr3:42546031-42546050 | MsG0380013642.01.T01:CDS | 35.0% | |
| GTTTACTTGATATCGAAAGG+TGG | + | Chr3:42546325-42546344 | MsG0380013642.01.T01:CDS | 35.0% | |
| GTTTAGGCTGAAAATCCAAA+AGG | + | Chr3:42547374-42547393 | MsG0380013642.01.T01:CDS | 35.0% | |
| TATGTCAAGGGAAAATGCAT+TGG | + | Chr3:42546582-42546601 | MsG0380013642.01.T01:CDS | 35.0% | |
| TCCCAATGATTTGAGAATCA+AGG | - | Chr3:42546036-42546055 | None:intergenic | 35.0% | |
| TCTGAATCCACAAATGACTT+TGG | - | Chr3:42546061-42546080 | None:intergenic | 35.0% | |
| TGAAAGATATTGTGGATGCT+GGG | + | Chr3:42546701-42546720 | MsG0380013642.01.T01:CDS | 35.0% | |
| TGCAGTAATGCCAAAATGTA+TGG | - | Chr3:42547514-42547533 | None:intergenic | 35.0% | |
| TTCATTGAAAGCAGTTACAC+AGG | - | Chr3:42547238-42547257 | None:intergenic | 35.0% | |
| TTCTTCGGTTCTTATGTCAA+GGG | + | Chr3:42546570-42546589 | MsG0380013642.01.T01:CDS | 35.0% | |
| TTTACAAAAAGCCGTGTAGT+AGG | - | Chr3:42546796-42546815 | None:intergenic | 35.0% | |
| ! | CTTCACCACATAATTCCTTT+TGG | - | Chr3:42547392-42547411 | None:intergenic | 35.0% |
| ! | GGCAGGTTTCAAATATTTTG+TGG | - | Chr3:42546362-42546381 | None:intergenic | 35.0% |
| ! | GGTTTCAAATATTTTGTGGC+AGG | - | Chr3:42546358-42546377 | None:intergenic | 35.0% |
| ! | TATCATCTGAAACTTTCCGA+CGG | + | Chr3:42545335-42545354 | MsG0380013642.01.T01:CDS | 35.0% |
| !! | ACTTTTGAGTCAGGATAGTA+GGG | - | Chr3:42545463-42545482 | None:intergenic | 35.0% |
| !! | GAGTTTGTTTTTCCTTGTAC+AGG | + | Chr3:42545978-42545997 | MsG0380013642.01.T01:intron | 35.0% |
| !! | TACTTTTGAGTCAGGATAGT+AGG | - | Chr3:42545464-42545483 | None:intergenic | 35.0% |
| AAAGATATTGTGGATGCTGG+GGG | + | Chr3:42546703-42546722 | MsG0380013642.01.T01:CDS | 40.0% | |
| AAGGCAAGGGTTACTTCAAA+AGG | + | Chr3:42546160-42546179 | MsG0380013642.01.T01:CDS | 40.0% | |
| AATGTCACTGATAGACCTGA+AGG | - | Chr3:42546494-42546513 | None:intergenic | 40.0% | |
| AGGCAAGGGTTACTTCAAAA+GGG | + | Chr3:42546161-42546180 | MsG0380013642.01.T01:CDS | 40.0% | |
| ATCAAAGATGAAGGTTTGGG+GGG | + | Chr3:42546949-42546968 | MsG0380013642.01.T01:CDS | 40.0% | |
| ATCCTTCAGGACTGTTATAG+TGG | - | Chr3:42546195-42546214 | None:intergenic | 40.0% | |
| ATCTAAAGGACAATTCTGGC+AGG | + | Chr3:42546626-42546645 | MsG0380013642.01.T01:CDS | 40.0% | |
| ATTCGCAAACATCAAACTCC+TGG | - | Chr3:42547170-42547189 | None:intergenic | 40.0% | |
| CACCATGTCTGTTAATCTGA+CGG | + | Chr3:42545205-42545224 | MsG0380013642.01.T01:exon | 40.0% | |
| CCAAGTCAGTAAACACAAGA+TGG | + | Chr3:42547127-42547146 | MsG0380013642.01.T01:CDS | 40.0% | |
| CTGAAAGATATTGTGGATGC+TGG | + | Chr3:42546700-42546719 | MsG0380013642.01.T01:CDS | 40.0% | |
| CTTTACATCCCTATAAGGGT+AGG | + | Chr3:42546128-42546147 | MsG0380013642.01.T01:CDS | 40.0% | |
| GAAAGATATTGTGGATGCTG+GGG | + | Chr3:42546702-42546721 | MsG0380013642.01.T01:CDS | 40.0% | |
| GAAGTTGGGGAAGACATTAT+AGG | + | Chr3:42547255-42547274 | MsG0380013642.01.T01:CDS | 40.0% | |
| GATGTTCTTGATTCTGATGG+AGG | + | Chr3:42546235-42546254 | MsG0380013642.01.T01:CDS | 40.0% | |
| GGTGCAATAAGAAAGTGACT+AGG | + | Chr3:42547076-42547095 | MsG0380013642.01.T01:CDS | 40.0% | |
| GTATAGAACCATCCTCATCT+GGG | - | Chr3:42546456-42546475 | None:intergenic | 40.0% | |
| TAGGGATGTAAAGCAGCTAT+TGG | - | Chr3:42546121-42546140 | None:intergenic | 40.0% | |
| TATGATCCACGATTTGAGCT+TGG | - | Chr3:42547206-42547225 | None:intergenic | 40.0% | |
| TGGGAATCCAAAGTCATTTG+TGG | + | Chr3:42546051-42546070 | MsG0380013642.01.T01:CDS | 40.0% | |
| TGTAAATCCAGATTTCCCTG+AGG | + | Chr3:42546810-42546829 | MsG0380013642.01.T01:CDS | 40.0% | |
| TTCTGATGGAGGTGAAATAC+AGG | + | Chr3:42546246-42546265 | MsG0380013642.01.T01:CDS | 40.0% | |
| ! | AAGCGATGAGCCATACATTT+TGG | + | Chr3:42547501-42547520 | MsG0380013642.01.T01:exon | 40.0% |
| ! | AGCTGCTTTACATCCCTATA+AGG | + | Chr3:42546123-42546142 | MsG0380013642.01.T01:CDS | 40.0% |
| ! | AGTGTTGAGCTAACACTTTG+GGG | + | Chr3:42546649-42546668 | MsG0380013642.01.T01:CDS | 40.0% |
| ! | CCATCTTGTGTTTACTGACT+TGG | - | Chr3:42547130-42547149 | None:intergenic | 40.0% |
| ! | GCTGCTTTACATCCCTATAA+GGG | + | Chr3:42546124-42546143 | MsG0380013642.01.T01:CDS | 40.0% |
| ! | GTTTTGCGTAGCTCATTCTT+TGG | - | Chr3:42546919-42546938 | None:intergenic | 40.0% |
| !! | AAACCGTTGGTTCAAGTTCT+CGG | + | Chr3:42545269-42545288 | MsG0380013642.01.T01:CDS | 40.0% |
| !! | GAGTGTTGAGCTAACACTTT+GGG | + | Chr3:42546648-42546667 | MsG0380013642.01.T01:CDS | 40.0% |
| !! | TTTTCCCGTTTTGGCAGTAA+AGG | + | Chr3:42546726-42546745 | MsG0380013642.01.T01:CDS | 40.0% |
| AAGGCCTTTGCATATCCTTC+AGG | - | Chr3:42546208-42546227 | None:intergenic | 45.0% | |
| ACATCCCTATAAGGGTAGGT+GGG | + | Chr3:42546132-42546151 | MsG0380013642.01.T01:CDS | 45.0% | |
| ATGCCGAGAACTTGAACCAA+CGG | - | Chr3:42545275-42545294 | None:intergenic | 45.0% | |
| CACTTTCTATGAAGCGATCG+AGG | + | Chr3:42546294-42546313 | MsG0380013642.01.T01:CDS | 45.0% | |
| CAGTCCTGAAGGATATGCAA+AGG | + | Chr3:42546201-42546220 | MsG0380013642.01.T01:CDS | 45.0% | |
| CATTCTCCAAGCTCAAATCG+TGG | + | Chr3:42547197-42547216 | MsG0380013642.01.T01:CDS | 45.0% | |
| CGTCAGATTAACAGACATGG+TGG | - | Chr3:42545207-42545226 | None:intergenic | 45.0% | |
| CTCCGTCAGATTAACAGACA+TGG | - | Chr3:42545210-42545229 | None:intergenic | 45.0% | |
| CTGTCATGATTGGAGATCGA+CGG | + | Chr3:42547055-42547074 | MsG0380013642.01.T01:CDS | 45.0% | |
| GAAGTGTGATAGATGCAACC+AGG | + | Chr3:42547149-42547168 | MsG0380013642.01.T01:CDS | 45.0% | |
| GCTATTCCGGCGATAATCAA+CGG | + | Chr3:42545233-42545252 | MsG0380013642.01.T01:CDS | 45.0% | |
| GCTCAAATCGTGGATCATAC+AGG | + | Chr3:42547207-42547226 | MsG0380013642.01.T01:CDS | 45.0% | |
| GGGAAGGTTAATGAATTCCG+TGG | + | Chr3:42546751-42546770 | MsG0380013642.01.T01:CDS | 45.0% | |
| GGTATAGAACCATCCTCATC+TGG | - | Chr3:42546457-42546476 | None:intergenic | 45.0% | |
| GTAATCGAGAAGCTGAACGA+TGG | - | Chr3:42545435-42545454 | None:intergenic | 45.0% | |
| GTATGCGTTCAAGTATGAGC+AGG | + | Chr3:42547296-42547315 | MsG0380013642.01.T01:CDS | 45.0% | |
| GTCGATCTCCAATCATGACA+GGG | - | Chr3:42547056-42547075 | None:intergenic | 45.0% | |
| TACATCCCTATAAGGGTAGG+TGG | + | Chr3:42546131-42546150 | MsG0380013642.01.T01:CDS | 45.0% | |
| TCAAAGATGAAGGTTTGGGG+GGG | + | Chr3:42546950-42546969 | MsG0380013642.01.T01:CDS | 45.0% | |
| TGAAGTAACCCTTGCCTTGA+TGG | - | Chr3:42546158-42546177 | None:intergenic | 45.0% | |
| TGAATTACTCTGCAGAGAGC+AGG | + | Chr3:42547451-42547470 | MsG0380013642.01.T01:CDS | 45.0% | |
| TTCTATGAAGCGATCGAGGT+CGG | + | Chr3:42546298-42546317 | MsG0380013642.01.T01:CDS | 45.0% | |
| TTGGGGTGAGTTATGCAACA+GGG | + | Chr3:42546666-42546685 | MsG0380013642.01.T01:CDS | 45.0% | |
| ! | AGGCTCTGGTTTGATCAAGA+CGG | + | Chr3:42546844-42546863 | MsG0380013642.01.T01:CDS | 45.0% |
| ! | TTTGGGGTGAGTTATGCAAC+AGG | + | Chr3:42546665-42546684 | MsG0380013642.01.T01:CDS | 45.0% |
| !! | GGAGTGTTGAGCTAACACTT+TGG | + | Chr3:42546647-42546666 | MsG0380013642.01.T01:CDS | 45.0% |
| ACAGCTTGCCCTGTCATGAT+TGG | + | Chr3:42547045-42547064 | MsG0380013642.01.T01:CDS | 50.0% | |
| AGCCAGACTGGATAACAACG+AGG | + | Chr3:42546983-42547002 | MsG0380013642.01.T01:CDS | 50.0% | |
| ATCGCTGCTCAACTCAACGA+CGG | + | Chr3:42545380-42545399 | MsG0380013642.01.T01:CDS | 50.0% | |
| ATGAGCAGGAGGATGATGAG+AGG | + | Chr3:42547310-42547329 | MsG0380013642.01.T01:CDS | 50.0% | |
| ATGGCCCACCTACCCTTATA+GGG | - | Chr3:42546139-42546158 | None:intergenic | 50.0% | |
| CCAGCCTTTACTGCCAAAAC+GGG | - | Chr3:42546733-42546752 | None:intergenic | 50.0% | |
| CCCAGCCTTTACTGCCAAAA+CGG | - | Chr3:42546734-42546753 | None:intergenic | 50.0% | |
| CGACGTTGATGCAAAACCGT+TGG | + | Chr3:42545256-42545275 | MsG0380013642.01.T01:CDS | 50.0% | |
| CGCCACTATAACAGTCCTGA+AGG | + | Chr3:42546190-42546209 | MsG0380013642.01.T01:CDS | 50.0% | |
| CGTCGATCTCCAATCATGAC+AGG | - | Chr3:42547057-42547076 | None:intergenic | 50.0% | |
| GCCAGACTGGATAACAACGA+GGG | + | Chr3:42546984-42547003 | MsG0380013642.01.T01:CDS | 50.0% | |
| GGAACCTTCCTTAACTCGTC+CGG | - | Chr3:42545414-42545433 | None:intergenic | 50.0% | |
| GGGGTGAGAATAAACTCCGT+CGG | - | Chr3:42545354-42545373 | None:intergenic | 50.0% | |
| GGTGAGTTATGCAACAGGGA+AGG | + | Chr3:42546670-42546689 | MsG0380013642.01.T01:CDS | 50.0% | |
| TCTGACGGAGAACGCTATTC+CGG | + | Chr3:42545220-42545239 | MsG0380013642.01.T01:CDS | 50.0% | |
| TGCGTTCAAGTATGAGCAGG+AGG | + | Chr3:42547299-42547318 | MsG0380013642.01.T01:CDS | 50.0% | |
| TGTTGAGCTTTGCCCAGATG+AGG | + | Chr3:42546441-42546460 | MsG0380013642.01.T01:CDS | 50.0% | |
| TTTGGCAGTAAAGGCTGGGA+AGG | + | Chr3:42546735-42546754 | MsG0380013642.01.T01:CDS | 50.0% | |
| ! | GGCTCTGGTTTGATCAAGAC+GGG | + | Chr3:42546845-42546864 | MsG0380013642.01.T01:CDS | 50.0% |
| !! | CCGTTTTGGCAGTAAAGGCT+GGG | + | Chr3:42546731-42546750 | MsG0380013642.01.T01:CDS | 50.0% |
| !! | GTTGAGTTGAGCAGCGATTG+TGG | - | Chr3:42545378-42545397 | None:intergenic | 50.0% |
| AGGCTCAGAGCTTAAGGCTC+TGG | + | Chr3:42546830-42546849 | MsG0380013642.01.T01:CDS | 55.0% | |
| AGTCGGAACCGGACGAGTTA+AGG | + | Chr3:42545403-42545422 | MsG0380013642.01.T01:CDS | 55.0% | |
| AGTTGAGCAGCGATTGTGGC+GGG | - | Chr3:42545374-42545393 | None:intergenic | 55.0% | |
| CTCTGAGCCTCAGGGAAATC+TGG | - | Chr3:42546820-42546839 | None:intergenic | 55.0% | |
| GAGCTTTGCCCAGATGAGGA+TGG | + | Chr3:42546445-42546464 | MsG0380013642.01.T01:CDS | 55.0% | |
| GAGTTGAGCAGCGATTGTGG+CGG | - | Chr3:42545375-42545394 | None:intergenic | 55.0% | |
| GATGGCCCACCTACCCTTAT+AGG | - | Chr3:42546140-42546159 | None:intergenic | 55.0% | |
| GCCCTCGTTGTTATCCAGTC+TGG | - | Chr3:42546988-42547007 | None:intergenic | 55.0% | |
| GCTCAACTCAACGACGGAGT+CGG | + | Chr3:42545386-42545405 | MsG0380013642.01.T01:CDS | 55.0% | |
| GGAACCGGACGAGTTAAGGA+AGG | + | Chr3:42545407-42545426 | MsG0380013642.01.T01:CDS | 55.0% | |
| TAAGGGTAGGTGGGCCATCA+AGG | + | Chr3:42546141-42546160 | MsG0380013642.01.T01:CDS | 55.0% | |
| TAGGTGGGCCATCAAGGCAA+GGG | + | Chr3:42546147-42546166 | MsG0380013642.01.T01:CDS | 55.0% | |
| TCCCTGAGGCTCAGAGCTTA+AGG | + | Chr3:42546824-42546843 | MsG0380013642.01.T01:CDS | 55.0% | |
| ! | ACGTCGCCGTTGATTATCGC+CGG | - | Chr3:42545242-42545261 | None:intergenic | 55.0% |
| ! | TGCTGGGGGTTTTCCCGTTT+TGG | + | Chr3:42546717-42546736 | MsG0380013642.01.T01:CDS | 55.0% |
| !! | AGCCTTAAGCTCTGAGCCTC+AGG | - | Chr3:42546829-42546848 | None:intergenic | 55.0% |
| !! | CCCGTTTTGGCAGTAAAGGC+TGG | + | Chr3:42546730-42546749 | MsG0380013642.01.T01:CDS | 55.0% |
| !! | GCCTTAAGCTCTGAGCCTCA+GGG | - | Chr3:42546828-42546847 | None:intergenic | 55.0% |
| CTCAACGACGGAGTCGGAAC+CGG | + | Chr3:42545392-42545411 | MsG0380013642.01.T01:CDS | 60.0% | |
| GTAGGTGGGCCATCAAGGCA+AGG | + | Chr3:42546146-42546165 | MsG0380013642.01.T01:CDS | 60.0% | |
| GTTGAGCAGCGATTGTGGCG+GGG | - | Chr3:42545373-42545392 | None:intergenic | 60.0% | |
| ! | TGAAGGTTTGGGGGGGCGCA+CGG | + | Chr3:42546957-42546976 | MsG0380013642.01.T01:CDS | 65.0% |
| GGCGCACGGACAAGCCAGAC+TGG | + | Chr3:42546971-42546990 | MsG0380013642.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 42545197 | 42547596 | 42545197 | ID=MsG0380013642.01;Name=MsG0380013642.01 |
| Chr3 | mRNA | 42545197 | 42547596 | 42545197 | ID=MsG0380013642.01.T01;Parent=MsG0380013642.01;Name=MsG0380013642.01.T01;_AED=0.39;_eAED=0.39;_QI=12|1|1|1|1|1|2|87|593 |
| Chr3 | exon | 42545197 | 42545480 | 42545197 | ID=MsG0380013642.01.T01:exon:4290;Parent=MsG0380013642.01.T01 |
| Chr3 | exon | 42546000 | 42547596 | 42546000 | ID=MsG0380013642.01.T01:exon:4291;Parent=MsG0380013642.01.T01 |
| Chr3 | five_prime_UTR | 42545197 | 42545208 | 42545197 | ID=MsG0380013642.01.T01:five_prime_utr;Parent=MsG0380013642.01.T01 |
| Chr3 | CDS | 42545209 | 42545480 | 42545209 | ID=MsG0380013642.01.T01:cds;Parent=MsG0380013642.01.T01 |
| Chr3 | CDS | 42546000 | 42547509 | 42546000 | ID=MsG0380013642.01.T01:cds;Parent=MsG0380013642.01.T01 |
| Chr3 | three_prime_UTR | 42547510 | 42547596 | 42547510 | ID=MsG0380013642.01.T01:three_prime_utr;Parent=MsG0380013642.01.T01 |
| Gene Sequence |
| Protein sequence |
