AlfalfaGEDB | MsG0380013857.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013857.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013857.01.T01	KEH25995.1	34.096	481	249	13	24	468	19	467	1.05E-71	247

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013857.01.T01	A0A072UJI6	34.096	481	249	13	24	468	19	467	4.99e-72	247

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180004482.01	MsG0380013857.01	PPI
MsG0380013857.01	MsG0780036807.01	PPI
MsG0380013857.01	MsG0780038445.01	PPI
MsG0380013857.01	MsG0580024787.01	PPI
MsG0380013857.01	MsG0180002283.01	PPI
MsG0380013857.01	MsG0280006563.01	PPI
MsG0380013857.01	MsG0280007841.01	PPI
MsG0380013857.01	MsG0380014885.01	PPI
MsG0380013857.01	MsG0280009289.01	PPI
MsG0380013857.01	MsG0580024813.01	PPI

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013857.01.T01	MTR_6g039060	34.096	481	249	13	24	468	19	467	1.27e-75	247
MsG0380013857.01.T01	MTR_5g049460	34.091	484	256	12	24	456	19	490	1.05e-71	235
MsG0380013857.01.T01	MTR_3g047490	39.521	334	155	6	1	298	1	323	2.08e-70	226
MsG0380013857.01.T01	MTR_0010s0130	35.217	460	236	16	24	467	19	432	2.22e-65	222
MsG0380013857.01.T01	MTR_0195s0040	30.120	498	283	12	14	451	13	505	1.76e-59	206
MsG0380013857.01.T01	MTR_0752s0020	32.790	491	248	17	1	467	1	433	1.91e-59	206
MsG0380013857.01.T01	MTR_6g052660	31.579	513	253	16	34	460	6	506	6.58e-59	204
MsG0380013857.01.T01	MTR_0387s0030	31.176	510	227	13	1	468	1	428	7.51e-56	197
MsG0380013857.01.T01	MTR_4g053915	31.250	512	269	11	26	468	25	522	3.35e-53	187
MsG0380013857.01.T01	MTR_0132s0050	34.141	495	248	17	1	468	1	444	2.90e-51	181

Showing 1 to 10 of 54 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 114 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGCTGGGTCAAAGAA+AGG	0.502080	3:-46759512	MsG0380013857.01.T01:CDS
AAACTTCCCAAGATATGTAA+TGG	0.477975	3:-46759141	MsG0380013857.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG	0.567877	3:-46759498	MsG0380013857.01.T01:CDS
AAAGGAAAGATGCAGAAGGT+TGG	0.591290	3:-46758571	MsG0380013857.01.T01:CDS
AAAGTCGTAAGCAAACAAGC+TGG	0.548529	3:-46759524	MsG0380013857.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG	0.513083	3:-46759511	MsG0380013857.01.T01:CDS
AACATATGTGAACTTGGTCA+AGG	0.631522	3:-46759588	MsG0380013857.01.T01:CDS
AAGAAAAGGTAAGGCAGACT+TGG	0.463889	3:-46758524	MsG0380013857.01.T01:CDS
AAGCAAAGCGTATCAGAATC+TGG	0.338583	3:-46759773	MsG0380013857.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG	0.558761	3:-46758912	MsG0380013857.01.T01:CDS

Showing 1 to 10 of 114 entries

Previous1 2 3 4 5…12Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTCCCAAGATATGTAA+TGG	-	Chr3:46759025-46759044	MsG0380013857.01.T01:intron	30.0%
AAGTATGAAGTAAACATGGA+AGG	-	Chr3:46758504-46758523	MsG0380013857.01.T01:CDS	30.0%
AATTTACTTCATGGCTATTC+TGG	-	Chr3:46758995-46759014	MsG0380013857.01.T01:intron	30.0%
AGATGATCCATTACATATCT+TGG	+	Chr3:46759035-46759054	None:intergenic	30.0%
CTGAAATCTTTATCAAGGAA+GGG	-	Chr3:46759120-46759139	MsG0380013857.01.T01:CDS	30.0%
GAGTATTTCAAGATGCTAAA+TGG	-	Chr3:46758552-46758571	MsG0380013857.01.T01:CDS	30.0%
GATGATCCATTACATATCTT+GGG	+	Chr3:46759034-46759053	None:intergenic	30.0%
TCTAAGCTATCAAATGATGT+AGG	+	Chr3:46758702-46758721	None:intergenic	30.0%
TGACTCTACTTGAACTATTA+AGG	+	Chr3:46758460-46758479	None:intergenic	30.0%
AAAGAAAGGGAAAATGGTCA+TGG	-	Chr3:46758668-46758687	MsG0380013857.01.T01:CDS	35.0%

Showing 1 to 10 of 131 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	46758351	46759837	46758351	ID=MsG0380013857.01;Name=MsG0380013857.01
Chr3	mRNA	46758351	46759837	46758351	ID=MsG0380013857.01.T01;Parent=MsG0380013857.01;Name=MsG0380013857.01.T01;_AED=0.50;_eAED=1.00;_QI=0\|0\|0\|1\|0\|0\|2\|0\|468
Chr3	exon	46759047	46759837	46759047	ID=MsG0380013857.01.T01:exon:25952;Parent=MsG0380013857.01.T01
Chr3	exon	46758351	46758963	46758351	ID=MsG0380013857.01.T01:exon:25951;Parent=MsG0380013857.01.T01
Chr3	CDS	46759047	46759837	46759047	ID=MsG0380013857.01.T01:cds;Parent=MsG0380013857.01.T01
Chr3	CDS	46758351	46758963	46758351	ID=MsG0380013857.01.T01:cds;Parent=MsG0380013857.01.T01

Gene Sequence

>MsG0380013857.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACATCAAACAAGCAAAGCGTATCAGAATCTGGGTCCATCTACAAAGAGAAGACTATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGATTGATAGAGACTCAGATGCTGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGGATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTACAAGGTTACTACAACACTCTTTTGGGTGGGAAGAAAGATGCAAAGCCTTCTGAAATGGAGATTCACAACAGGATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGATCTGACCAACCCAACAATCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAACTTCCCAAGATATGTAATGGATCATCTCTGCTGGGCCATAAATGAAAGCACTATCAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTGTCTGAAATCTTTATCAAGGAAGGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCGAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAAGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGATGCACCTAAAGGGAAAAGGGCCAGAACTAGTTCTGAATCTGATGCTGCTCCTACTAAAGGCAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTCTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCATCGAAGAGAAGAAAAGGTAAGGCAGACTTGGTAATCACTCAAGAGCAGCTGGAGGAAGCTCTTGAAGAAATGGAGAAAGAAGAGGCTGATCCCAAGCTGAAGAAGAAGAAGGCTCCCCTTCAACTTGTGAGTCCTATGGTTGAGATGACTCCAATAAGGAAAAGGATGGCAGATGAACGTGCTTCTGAACTTATTTCAGACAAA

Protein sequence

>MsG0380013857.01.T01

MASSSSKVSESTSNKQSVSESGSIYKEKTMDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMLSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMDAEGRFQEIVRKEDVLLQGYYNTLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMAILEKINFPRYVMDHLCWAINESTIRGRKQVPYGRLLSEIFIKEGSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSDAPKGKRARTSSESDAAPTKGKKARTSTESEAAKPVSIKEKGKMQKVGAASIPSKRRKGKADLVITQEQLEEALEEMEKEEADPKLKKKKAPLQLVSPMVEMTPIRKRMADERASELISDK