AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013857.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013857.01.T01 MTR_6g039060 34.096 481 249 13 24 468 19 467 1.27e-75 247
MsG0380013857.01.T01 MTR_5g049460 34.091 484 256 12 24 456 19 490 1.05e-71 235
MsG0380013857.01.T01 MTR_3g047490 39.521 334 155 6 1 298 1 323 2.08e-70 226
MsG0380013857.01.T01 MTR_0010s0130 35.217 460 236 16 24 467 19 432 2.22e-65 222
MsG0380013857.01.T01 MTR_0195s0040 30.120 498 283 12 14 451 13 505 1.76e-59 206
MsG0380013857.01.T01 MTR_0752s0020 32.790 491 248 17 1 467 1 433 1.91e-59 206
MsG0380013857.01.T01 MTR_6g052660 31.579 513 253 16 34 460 6 506 6.58e-59 204
MsG0380013857.01.T01 MTR_0387s0030 31.176 510 227 13 1 468 1 428 7.51e-56 197
MsG0380013857.01.T01 MTR_4g053915 31.250 512 269 11 26 468 25 522 3.35e-53 187
MsG0380013857.01.T01 MTR_0132s0050 34.141 495 248 17 1 468 1 444 2.90e-51 181
MsG0380013857.01.T01 MTR_6g047410 31.421 401 216 11 26 373 24 418 5.46e-48 177
MsG0380013857.01.T01 MTR_1465s0010 30.377 451 229 11 26 437 13 417 2.68e-47 169
MsG0380013857.01.T01 MTR_7g009270 29.468 526 281 16 26 468 25 543 2.77e-47 175
MsG0380013857.01.T01 MTR_7g068680 31.407 398 228 11 26 393 25 407 3.02e-47 168
MsG0380013857.01.T01 MTR_4g119430 33.968 315 165 7 26 301 24 334 8.68e-47 172
MsG0380013857.01.T01 MTR_0547s0010 33.248 391 174 11 113 461 1 346 1.48e-46 168
MsG0380013857.01.T01 MTR_7g099763 38.735 253 147 4 26 270 24 276 1.61e-46 164
MsG0380013857.01.T01 MTR_4g046907 33.248 391 174 11 113 461 1 346 2.86e-46 167
MsG0380013857.01.T01 MTR_3g048350 30.361 415 222 10 34 398 6 403 4.20e-46 172
MsG0380013857.01.T01 MTR_1g053665 37.500 288 151 9 80 357 24 292 5.32e-46 164
MsG0380013857.01.T01 MTR_5g459570 38.521 257 142 5 26 270 24 276 6.24e-46 169
MsG0380013857.01.T01 MTR_5g084777 40.234 256 134 8 26 268 24 273 6.76e-46 171
MsG0380013857.01.T01 MTR_8g012072 38.224 259 144 5 26 272 24 278 1.10e-45 171
MsG0380013857.01.T01 MTR_6g471790 38.224 259 144 5 26 272 24 278 1.19e-45 171
MsG0380013857.01.T01 MTR_8g087757 38.224 259 144 5 26 272 24 278 1.53e-45 170
MsG0380013857.01.T01 MTR_0133s0060 38.224 259 144 5 26 272 24 278 1.58e-45 170
MsG0380013857.01.T01 MTR_3g436570 38.224 259 144 5 26 272 24 278 2.29e-45 170
MsG0380013857.01.T01 MTR_7g024373 37.838 259 145 5 26 272 24 278 1.24e-44 167
MsG0380013857.01.T01 MTR_6g049080 30.971 381 178 9 24 374 19 344 1.42e-44 160
MsG0380013857.01.T01 MTR_5g056945 34.397 282 164 5 1 270 1 273 4.48e-44 157
MsG0380013857.01.T01 MTR_0454s0020 31.215 362 198 8 36 349 147 505 4.76e-43 160
MsG0380013857.01.T01 MTR_6g464050 28.205 468 257 13 14 464 13 418 4.75e-41 157
MsG0380013857.01.T01 MTR_0015s0160 32.595 316 166 6 26 300 25 334 5.05e-41 154
MsG0380013857.01.T01 MTR_6g033905 31.699 306 133 6 26 301 25 284 1.74e-38 147
MsG0380013857.01.T01 MTR_0322s0040 26.829 410 218 10 26 388 25 399 1.24e-31 126
MsG0380013857.01.T01 MTR_7g027027 40.909 176 95 5 26 193 24 198 3.95e-29 113
MsG0380013857.01.T01 MTR_3g450160 32.195 205 133 2 72 270 1 205 5.27e-29 120
MsG0380013857.01.T01 MTR_8g468090 27.760 317 170 8 68 342 2 301 1.22e-28 119
MsG0380013857.01.T01 MTR_5g056860 26.778 478 215 17 26 437 25 433 5.55e-27 115
MsG0380013857.01.T01 MTR_0002s0140 43.796 137 73 1 24 156 19 155 1.54e-26 108
MsG0380013857.01.T01 MTR_7g038780 24.791 359 205 10 26 342 25 360 9.86e-25 106
MsG0380013857.01.T01 MTR_0324s0040 26.736 288 165 6 106 350 10 294 1.51e-22 99.0
MsG0380013857.01.T01 MTR_1g099290 27.985 268 158 7 62 321 320 560 1.29e-20 95.1
MsG0380013857.01.T01 MTR_7g045830 31.020 245 129 4 30 270 1 209 4.59e-19 89.4
MsG0380013857.01.T01 MTR_3g047110 43.056 72 38 2 204 275 30 98 6.41e-18 83.2
MsG0380013857.01.T01 MTR_3g436840 50.000 98 46 2 1 98 1 95 1.81e-17 85.1
MsG0380013857.01.T01 MTR_0450s0010 30.061 163 81 3 183 314 1 161 4.06e-17 82.8
MsG0380013857.01.T01 MTR_5g049140 27.393 303 150 9 183 424 1 294 4.57e-17 84.3
MsG0380013857.01.T01 MTR_1g423950 43.836 73 41 0 26 98 24 96 1.14e-13 67.8
MsG0380013857.01.T01 MTR_1638s0010 27.106 273 144 7 235 468 1 257 3.02e-13 71.2
MsG0380013857.01.T01 MTR_3g040210 45.122 82 43 1 20 99 4 85 4.42e-13 71.2
MsG0380013857.01.T01 MTR_3g031890 42.683 82 43 3 26 104 25 105 1.58e-12 65.5
MsG0380013857.01.T01 MTR_1g052035 25.444 169 97 3 175 314 99 267 3.05e-12 67.8
MsG0380013857.01.T01 MTR_1g052035 42.000 100 51 4 1 99 1 94 5.84e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGATAGTGCTTTCATTTA+TGG 0.020977 3:+46759103 None:intergenic
GGACTTTCCTCCCATCTTTA+AGG 0.153003 3:-46758854 MsG0380013857.01.T01:CDS
TGACTCTACTTGAACTATTA+AGG 0.226667 3:+46759709 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 3:+46759357 None:intergenic
GCCTTCTTCTTCTTCAGCTT+GGG 0.265675 3:+46758442 None:intergenic
AGGTTACTACAACACTCTTT+TGG 0.268967 3:-46759321 MsG0380013857.01.T01:CDS
GAGTATTTCAAGATGCTAAA+TGG 0.300004 3:-46759614 MsG0380013857.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 3:-46759580 MsG0380013857.01.T01:CDS
CATAGTCTTCTCTTTGTAGA+TGG 0.316178 3:+46759748 None:intergenic
AATTTACTTCATGGCTATTC+TGG 0.318612 3:-46759171 MsG0380013857.01.T01:CDS
CTGCTGAAACTGAGATAATC+AGG 0.323360 3:-46758876 MsG0380013857.01.T01:CDS
ACGTCCTCAGTGATGGTTAT+AGG 0.334141 3:+46759419 None:intergenic
GAAGCTAGCAATTTACTTCA+TGG 0.334384 3:-46759180 MsG0380013857.01.T01:CDS
AAGCAAAGCGTATCAGAATC+TGG 0.338583 3:-46759773 MsG0380013857.01.T01:CDS
CATTTGATAGCTTAGAAATA+AGG 0.347561 3:-46759460 MsG0380013857.01.T01:CDS
AGATGATCCATTACATATCT+TGG 0.352507 3:+46759134 None:intergenic
AGCCTTCTTCTTCTTCAGCT+TGG 0.352894 3:+46758441 None:intergenic
CCTGTTTCTATCAAGGAAAA+AGG 0.356420 3:-46758589 MsG0380013857.01.T01:CDS
TGCTAGCTTCTGTTGATTGT+TGG 0.363863 3:+46759193 None:intergenic
TTCTGACTCAGTACTAGTTC+TGG 0.378125 3:+46758621 None:intergenic
GCTAGCTTCTGTTGATTGTT+GGG 0.380746 3:+46759194 None:intergenic
CTGGCCTTCTTGCCTTTAGT+AGG 0.392421 3:+46758640 None:intergenic
GCTTCTGTTGATTGTTGGGT+TGG 0.399652 3:+46759198 None:intergenic
GGAGGAAGCTCTTGAAGAAA+TGG 0.399926 3:-46758482 MsG0380013857.01.T01:CDS
ACGTTATAGCTAAAGCTTGT+AGG 0.401395 3:-46759400 MsG0380013857.01.T01:CDS
TTCTGACACAGCAACTGCTT+TGG 0.413585 3:+46758726 None:intergenic
AGAGTCACTTTCCTTAAAGA+TGG 0.416859 3:+46758843 None:intergenic
AGATGCAAAGCCTTCTGAAA+TGG 0.433259 3:-46759288 MsG0380013857.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 3:-46759364 MsG0380013857.01.T01:CDS
GCTGTCTGAAATCTTTATCA+AGG 0.442859 3:-46759051 MsG0380013857.01.T01:CDS
AGTATTTCAAGATGCTAAAT+GGG 0.444412 3:-46759613 MsG0380013857.01.T01:CDS
CCTTCAACTTGTGAGTCCTA+TGG 0.444502 3:-46758416 MsG0380013857.01.T01:CDS
TGGTTGAGATGACTCCAATA+AGG 0.447143 3:-46758396 MsG0380013857.01.T01:CDS
GATGATCCATTACATATCTT+GGG 0.455203 3:+46759135 None:intergenic
CTGATGCACCTAAAGGGAAA+AGG 0.457007 3:-46758693 MsG0380013857.01.T01:CDS
GGAGGAAGATGCGAGGTCTC+AGG 0.460578 3:-46758785 MsG0380013857.01.T01:CDS
GAGGAAGCTGCTCTTGCTAA+AGG 0.460692 3:-46758763 MsG0380013857.01.T01:CDS
CATCTACAAAGAGAAGACTA+TGG 0.463223 3:-46759747 MsG0380013857.01.T01:CDS
AAGAAAAGGTAAGGCAGACT+TGG 0.463889 3:-46758524 MsG0380013857.01.T01:CDS
ATGTAATGGATCATCTCTGC+TGG 0.475466 3:-46759127 MsG0380013857.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 3:-46759447 MsG0380013857.01.T01:CDS
TGCTAAACCTGTTTCTATCA+AGG 0.477409 3:-46758596 MsG0380013857.01.T01:CDS
AAACTTCCCAAGATATGTAA+TGG 0.477975 3:-46759141 MsG0380013857.01.T01:CDS
AGGAAGCTGCTCTTGCTAAA+GGG 0.478652 3:-46758762 MsG0380013857.01.T01:CDS
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 3:-46759230 MsG0380013857.01.T01:CDS
CTGTTTCTGATGCACCTAAA+GGG 0.489553 3:-46758699 MsG0380013857.01.T01:CDS
TCTAAGCTATCAAATGATGT+AGG 0.490834 3:+46759467 None:intergenic
CTGAAATGGAGATTCACAAC+AGG 0.491040 3:-46759274 MsG0380013857.01.T01:CDS
AGATGACTCCAATAAGGAAA+AGG 0.494448 3:-46758390 MsG0380013857.01.T01:CDS
TGGGTCAAAGAAAGGGAAAA+TGG 0.497362 3:-46759504 MsG0380013857.01.T01:CDS
ATCAGATTCAGAACTAGTTC+TGG 0.499274 3:+46758669 None:intergenic
AGAAGACTATGGATATTCCA+TGG 0.500726 3:-46759736 MsG0380013857.01.T01:CDS
AAACAAGCTGGGTCAAAGAA+AGG 0.502080 3:-46759512 MsG0380013857.01.T01:CDS
GCTGTTTCTGATGCACCTAA+AGG 0.505921 3:-46758700 MsG0380013857.01.T01:CDS
TGATGCACCTAAAGGGAAAA+GGG 0.511185 3:-46758692 MsG0380013857.01.T01:CDS
ATTCCATCGAAGAGAAGAAA+AGG 0.512203 3:-46758538 MsG0380013857.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG 0.513083 3:-46759511 MsG0380013857.01.T01:CDS
TCTGATGCTGCTCCTACTAA+AGG 0.520779 3:-46758652 MsG0380013857.01.T01:CDS
TCTGAAATCTTTATCAAGGA+AGG 0.522248 3:-46759047 MsG0380013857.01.T01:CDS
GGTAATCACTCAAGAGCAGC+TGG 0.523103 3:-46758503 MsG0380013857.01.T01:CDS
TTGTGAATCTCCATTTCAGA+AGG 0.526263 3:+46759278 None:intergenic
ATCAGTAGCTGAGTACGTCT+TGG 0.528893 3:-46758806 MsG0380013857.01.T01:CDS
TGGGCCAACATATGTGAACT+TGG 0.531084 3:-46759594 MsG0380013857.01.T01:CDS
GGAAGAAAACAAGTACCCTA+TGG 0.532902 3:-46759080 MsG0380013857.01.T01:CDS
AGCAAAGCGTATCAGAATCT+GGG 0.533512 3:-46759772 MsG0380013857.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 3:+46759590 None:intergenic
CATAGGACTCACAAGTTGAA+GGG 0.535256 3:+46758417 None:intergenic
GAGTCACTTTCCTTAAAGAT+GGG 0.539345 3:+46758844 None:intergenic
TGAAGAAATGGAGAAAGAAG+AGG 0.544948 3:-46758470 MsG0380013857.01.T01:CDS
AAAGTCGTAAGCAAACAAGC+TGG 0.548529 3:-46759524 MsG0380013857.01.T01:CDS
ATCGAAGAGAAGAAAAGGTA+AGG 0.548705 3:-46758533 MsG0380013857.01.T01:CDS
TGTTGTAGTAACCTTGTAGC+AGG 0.549844 3:+46759330 None:intergenic
AGCTATAACGTCCTCAGTGA+TGG 0.550655 3:+46759412 None:intergenic
TTCAGACAGCAATCTTCCAT+AGG 0.552612 3:+46759064 None:intergenic
CCATAGGACTCACAAGTTGA+AGG 0.557869 3:+46758416 None:intergenic
TGCTAAAGGGAAAGGCAAGA+AGG 0.557921 3:-46758749 MsG0380013857.01.T01:CDS
AAGCCCCTAAAGATGAAAAG+TGG 0.558761 3:-46758912 MsG0380013857.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 3:-46759446 MsG0380013857.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 3:-46759360 MsG0380013857.01.T01:CDS
TGCTTCTTTCAAAGAGCAGG+AGG 0.563512 3:-46759227 MsG0380013857.01.T01:CDS
ATTGGAGTCATCTCAACCAT+AGG 0.564208 3:+46758400 None:intergenic
CAAGAAGTATGAAGTAAACA+TGG 0.567275 3:-46759666 MsG0380013857.01.T01:CDS
AAAGAAAGGGAAAATGGTCA+TGG 0.567877 3:-46759498 MsG0380013857.01.T01:CDS
AAGGAAGATGTCCTGCTACA+AGG 0.568237 3:-46759341 MsG0380013857.01.T01:CDS
TGCTCCTACTAAAGGCAAGA+AGG 0.571040 3:-46758644 MsG0380013857.01.T01:CDS
CTGAAATCTTTATCAAGGAA+GGG 0.572524 3:-46759046 MsG0380013857.01.T01:intron
AGTAGCTGAGTACGTCTTGG+AGG 0.574153 3:-46758803 MsG0380013857.01.T01:CDS
TGAACTATTAAGGATTCCCA+TGG 0.576043 3:+46759719 None:intergenic
GCTGCTCTTGCTAAAGGGAA+AGG 0.581656 3:-46758757 MsG0380013857.01.T01:CDS
ACTCAGCTACTGATTGAACT+AGG 0.585948 3:+46758815 None:intergenic
TCAGACAGCAATCTTCCATA+GGG 0.588685 3:+46759065 None:intergenic
GGAGATTCACAACAGGATGT+TGG 0.588861 3:-46759267 MsG0380013857.01.T01:CDS
TCCCAAGCTGAAGAAGAAGA+AGG 0.589972 3:-46758443 MsG0380013857.01.T01:CDS
AAGTCGTAAGCAAACAAGCT+GGG 0.591113 3:-46759523 MsG0380013857.01.T01:CDS
AAAGGAAAGATGCAGAAGGT+TGG 0.591290 3:-46758571 MsG0380013857.01.T01:CDS
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 3:-46759705 MsG0380013857.01.T01:CDS
TATAGCTAAAGCTTGTAGGA+TGG 0.593671 3:-46759396 MsG0380013857.01.T01:CDS
AGCTTGTAGGATGGATGCAG+AGG 0.595153 3:-46759387 MsG0380013857.01.T01:CDS
GACTCCAATAAGGAAAAGGA+TGG 0.600286 3:-46758386 MsG0380013857.01.T01:CDS
GAAGACTATGGATATTCCAT+GGG 0.608051 3:-46759735 MsG0380013857.01.T01:CDS
TCACTTTCCTTAAAGATGGG+AGG 0.608137 3:+46758847 None:intergenic
ATAAATGAAAGCACTATCAG+AGG 0.610449 3:-46759101 MsG0380013857.01.T01:CDS
AAGTATGAAGTAAACATGGA+AGG 0.610824 3:-46759662 MsG0380013857.01.T01:CDS
TGTAATGGATCATCTCTGCT+GGG 0.612052 3:-46759126 MsG0380013857.01.T01:CDS
TGCTGAAACTGAGATAATCA+GGG 0.625436 3:-46758875 MsG0380013857.01.T01:CDS
TTGAGTGAAGCAAAATCCAC+CGG 0.625573 3:+46759686 None:intergenic
GGAAGATGCGAGGTCTCAGG+AGG 0.628698 3:-46758782 MsG0380013857.01.T01:CDS
AACATATGTGAACTTGGTCA+AGG 0.631522 3:-46759588 MsG0380013857.01.T01:CDS
GCTTGTAGGATGGATGCAGA+GGG 0.632839 3:-46759386 MsG0380013857.01.T01:CDS
ATAGGACTCACAAGTTGAAG+GGG 0.642424 3:+46758418 None:intergenic
AATCACTCAAGAGCAGCTGG+AGG 0.695190 3:-46758500 MsG0380013857.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 3:-46759702 MsG0380013857.01.T01:CDS
ACGTCTTGGAGGAAGATGCG+AGG 0.711757 3:-46758792 MsG0380013857.01.T01:CDS
CATTCCTATAACCATCACTG+AGG 0.778544 3:-46759423 MsG0380013857.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTATTTCAAGATGCTAAAT+GGG - Chr3:46758553-46758572 MsG0380013857.01.T01:CDS 25.0%
!! CATTTGATAGCTTAGAAATA+AGG - Chr3:46758706-46758725 MsG0380013857.01.T01:CDS 25.0%
AAACTTCCCAAGATATGTAA+TGG - Chr3:46759025-46759044 MsG0380013857.01.T01:intron 30.0%
AAGTATGAAGTAAACATGGA+AGG - Chr3:46758504-46758523 MsG0380013857.01.T01:CDS 30.0%
AATTTACTTCATGGCTATTC+TGG - Chr3:46758995-46759014 MsG0380013857.01.T01:intron 30.0%
AGATGATCCATTACATATCT+TGG + Chr3:46759035-46759054 None:intergenic 30.0%
CTGAAATCTTTATCAAGGAA+GGG - Chr3:46759120-46759139 MsG0380013857.01.T01:CDS 30.0%
GAGTATTTCAAGATGCTAAA+TGG - Chr3:46758552-46758571 MsG0380013857.01.T01:CDS 30.0%
GATGATCCATTACATATCTT+GGG + Chr3:46759034-46759053 None:intergenic 30.0%
TCTAAGCTATCAAATGATGT+AGG + Chr3:46758702-46758721 None:intergenic 30.0%
TGACTCTACTTGAACTATTA+AGG + Chr3:46758460-46758479 None:intergenic 30.0%
! CAAGAAGTATGAAGTAAACA+TGG - Chr3:46758500-46758519 MsG0380013857.01.T01:CDS 30.0%
! TCTGAAATCTTTATCAAGGA+AGG - Chr3:46759119-46759138 MsG0380013857.01.T01:CDS 30.0%
! TCTGATAGTGCTTTCATTTA+TGG + Chr3:46759066-46759085 None:intergenic 30.0%
!! ATAAATGAAAGCACTATCAG+AGG - Chr3:46759065-46759084 MsG0380013857.01.T01:CDS 30.0%
!! CTAACCACTTTTCATCTTTA+GGG + Chr3:46759261-46759280 None:intergenic 30.0%
!! TAACCACTTTTCATCTTTAG+GGG + Chr3:46759260-46759279 None:intergenic 30.0%
!! TCTAACCACTTTTCATCTTT+AGG + Chr3:46759262-46759281 None:intergenic 30.0%
AAAGAAAGGGAAAATGGTCA+TGG - Chr3:46758668-46758687 MsG0380013857.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG - Chr3:46758578-46758597 MsG0380013857.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG - Chr3:46758461-46758480 MsG0380013857.01.T01:CDS 35.0%
ACGTTATAGCTAAAGCTTGT+AGG - Chr3:46758766-46758785 MsG0380013857.01.T01:CDS 35.0%
AGAAGACTATGGATATTCCA+TGG - Chr3:46758430-46758449 MsG0380013857.01.T01:CDS 35.0%
AGATGACTCCAATAAGGAAA+AGG - Chr3:46759776-46759795 MsG0380013857.01.T01:CDS 35.0%
ATCAGATTCAGAACTAGTTC+TGG + Chr3:46759500-46759519 None:intergenic 35.0%
ATCGAAGAGAAGAAAAGGTA+AGG - Chr3:46759633-46759652 MsG0380013857.01.T01:CDS 35.0%
ATTCCAAGAAATAGTCAGGA+AGG - Chr3:46758806-46758825 MsG0380013857.01.T01:CDS 35.0%
ATTCCATCGAAGAGAAGAAA+AGG - Chr3:46759628-46759647 MsG0380013857.01.T01:CDS 35.0%
CATAGTCTTCTCTTTGTAGA+TGG + Chr3:46758421-46758440 None:intergenic 35.0%
CATCTACAAAGAGAAGACTA+TGG - Chr3:46758419-46758438 MsG0380013857.01.T01:CDS 35.0%
GAAGACTATGGATATTCCAT+GGG - Chr3:46758431-46758450 MsG0380013857.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG - Chr3:46758802-46758821 MsG0380013857.01.T01:CDS 35.0%
GAAGCTAGCAATTTACTTCA+TGG - Chr3:46758986-46759005 MsG0380013857.01.T01:intron 35.0%
TATAGCTAAAGCTTGTAGGA+TGG - Chr3:46758770-46758789 MsG0380013857.01.T01:CDS 35.0%
TGAACTATTAAGGATTCCCA+TGG + Chr3:46758450-46758469 None:intergenic 35.0%
TGAAGAAATGGAGAAAGAAG+AGG - Chr3:46759696-46759715 MsG0380013857.01.T01:CDS 35.0%
TGCTGAAACTGAGATAATCA+GGG - Chr3:46759291-46759310 MsG0380013857.01.T01:CDS 35.0%
TGGAGTTCTTAAAAAGGACA+AGG - Chr3:46759146-46759165 MsG0380013857.01.T01:CDS 35.0%
TTGACCAAGTTCACATATGT+TGG + Chr3:46758579-46758598 None:intergenic 35.0%
TTGTGAATCTCCATTTCAGA+AGG + Chr3:46758891-46758910 None:intergenic 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG - Chr3:46758719-46758738 MsG0380013857.01.T01:CDS 35.0%
! AGAGTCACTTTCCTTAAAGA+TGG + Chr3:46759326-46759345 None:intergenic 35.0%
! AGGTTACTACAACACTCTTT+TGG - Chr3:46758845-46758864 MsG0380013857.01.T01:CDS 35.0%
! CCTTTTTCCTTGATAGAAAC+AGG + Chr3:46759580-46759599 None:intergenic 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG - Chr3:46758720-46758739 MsG0380013857.01.T01:CDS 35.0%
! GAGTCACTTTCCTTAAAGAT+GGG + Chr3:46759325-46759344 None:intergenic 35.0%
! GCTGTCTGAAATCTTTATCA+AGG - Chr3:46759115-46759134 MsG0380013857.01.T01:CDS 35.0%
! GGTTACTACAACACTCTTTT+GGG - Chr3:46758846-46758865 MsG0380013857.01.T01:CDS 35.0%
! TTACCTTTTCTTCTCTTCGA+TGG + Chr3:46759634-46759653 None:intergenic 35.0%
!! CCTGTTTCTATCAAGGAAAA+AGG - Chr3:46759577-46759596 MsG0380013857.01.T01:CDS 35.0%
!! TGCTAAACCTGTTTCTATCA+AGG - Chr3:46759570-46759589 MsG0380013857.01.T01:CDS 35.0%
AAACAAGCTGGGTCAAAGAA+AGG - Chr3:46758654-46758673 MsG0380013857.01.T01:CDS 40.0%
AAAGGAAAGATGCAGAAGGT+TGG - Chr3:46759595-46759614 MsG0380013857.01.T01:CDS 40.0%
AAAGTCGTAAGCAAACAAGC+TGG - Chr3:46758642-46758661 MsG0380013857.01.T01:CDS 40.0%
AACAAGCTGGGTCAAAGAAA+GGG - Chr3:46758655-46758674 MsG0380013857.01.T01:CDS 40.0%
AAGAAAAGGTAAGGCAGACT+TGG - Chr3:46759642-46759661 MsG0380013857.01.T01:CDS 40.0%
AAGCAAAGCGTATCAGAATC+TGG - Chr3:46758393-46758412 MsG0380013857.01.T01:CDS 40.0%
AAGCCCCTAAAGATGAAAAG+TGG - Chr3:46759254-46759273 MsG0380013857.01.T01:CDS 40.0%
AAGTCGTAAGCAAACAAGCT+GGG - Chr3:46758643-46758662 MsG0380013857.01.T01:CDS 40.0%
AGCAAAGCGTATCAGAATCT+GGG - Chr3:46758394-46758413 MsG0380013857.01.T01:CDS 40.0%
ATTGGAGTCATCTCAACCAT+AGG + Chr3:46759769-46759788 None:intergenic 40.0%
CATTCCTATAACCATCACTG+AGG - Chr3:46758743-46758762 MsG0380013857.01.T01:CDS 40.0%
CTGAAATGGAGATTCACAAC+AGG - Chr3:46758892-46758911 MsG0380013857.01.T01:CDS 40.0%
CTGCTGAAACTGAGATAATC+AGG - Chr3:46759290-46759309 MsG0380013857.01.T01:CDS 40.0%
GACTCCAATAAGGAAAAGGA+TGG - Chr3:46759780-46759799 MsG0380013857.01.T01:CDS 40.0%
GATTGCTTCTTTCAAAGAGC+AGG - Chr3:46758936-46758955 MsG0380013857.01.T01:CDS 40.0%
GGAAAAAGGAAAGATGCAGA+AGG - Chr3:46759591-46759610 MsG0380013857.01.T01:CDS 40.0%
GGAAGAAAACAAGTACCCTA+TGG - Chr3:46759086-46759105 MsG0380013857.01.T01:CDS 40.0%
TCACTTTCCTTAAAGATGGG+AGG + Chr3:46759322-46759341 None:intergenic 40.0%
TCAGACAGCAATCTTCCATA+GGG + Chr3:46759104-46759123 None:intergenic 40.0%
TGATGCACCTAAAGGGAAAA+GGG - Chr3:46759474-46759493 MsG0380013857.01.T01:CDS 40.0%
TGGGTCAAAGAAAGGGAAAA+TGG - Chr3:46758662-46758681 MsG0380013857.01.T01:CDS 40.0%
TGGTTGAGATGACTCCAATA+AGG - Chr3:46759770-46759789 MsG0380013857.01.T01:CDS 40.0%
TGTTGTAGTAACCTTGTAGC+AGG + Chr3:46758839-46758858 None:intergenic 40.0%
TTCAGACAGCAATCTTCCAT+AGG + Chr3:46759105-46759124 None:intergenic 40.0%
TTCTGACTCAGTACTAGTTC+TGG + Chr3:46759548-46759567 None:intergenic 40.0%
TTGAGTGAAGCAAAATCCAC+CGG + Chr3:46758483-46758502 None:intergenic 40.0%
! ACTCAGCTACTGATTGAACT+AGG + Chr3:46759354-46759373 None:intergenic 40.0%
! AGATGCAAAGCCTTCTGAAA+TGG - Chr3:46758878-46758897 MsG0380013857.01.T01:CDS 40.0%
! ATAGGACTCACAAGTTGAAG+GGG + Chr3:46759751-46759770 None:intergenic 40.0%
! CATAGGACTCACAAGTTGAA+GGG + Chr3:46759752-46759771 None:intergenic 40.0%
! CTTCCTTCCTGACTATTTCT+TGG + Chr3:46758812-46758831 None:intergenic 40.0%
! GCTAGCTTCTGTTGATTGTT+GGG + Chr3:46758975-46758994 None:intergenic 40.0%
! TACTACAACACTCTTTTGGG+TGG - Chr3:46758849-46758868 MsG0380013857.01.T01:CDS 40.0%
! TCTGCCATCCTTTTCCTTAT+TGG + Chr3:46759787-46759806 None:intergenic 40.0%
! TGAACTTGGTCAAGGACTTT+TGG - Chr3:46758586-46758605 MsG0380013857.01.T01:CDS 40.0%
! TGCTAGCTTCTGTTGATTGT+TGG + Chr3:46758976-46758995 None:intergenic 40.0%
! TGTTTGCTTACGACTTTTGC+AGG + Chr3:46758639-46758658 None:intergenic 40.0%
!! ACTACAACACTCTTTTGGGT+GGG - Chr3:46758850-46758869 MsG0380013857.01.T01:CDS 40.0%
!! ATGTAATGGATCATCTCTGC+TGG - Chr3:46759039-46759058 MsG0380013857.01.T01:intron 40.0%
!! CTGTTTCTGATGCACCTAAA+GGG - Chr3:46759467-46759486 MsG0380013857.01.T01:CDS 40.0%
!! TGTAATGGATCATCTCTGCT+GGG - Chr3:46759040-46759059 MsG0380013857.01.T01:intron 40.0%
AAGGAAGATGTCCTGCTACA+AGG - Chr3:46758825-46758844 MsG0380013857.01.T01:CDS 45.0%
ACGTCCTCAGTGATGGTTAT+AGG + Chr3:46758750-46758769 None:intergenic 45.0%
AGCCTTCTTCTTCTTCAGCT+TGG + Chr3:46759728-46759747 None:intergenic 45.0%
AGCTATAACGTCCTCAGTGA+TGG + Chr3:46758757-46758776 None:intergenic 45.0%
AGGAAGCTGCTCTTGCTAAA+GGG - Chr3:46759404-46759423 MsG0380013857.01.T01:CDS 45.0%
ATCAGTAGCTGAGTACGTCT+TGG - Chr3:46759360-46759379 MsG0380013857.01.T01:CDS 45.0%
CCTTCAACTTGTGAGTCCTA+TGG - Chr3:46759750-46759769 MsG0380013857.01.T01:CDS 45.0%
CTGAAAGGACTATCAGTAGC+AGG - Chr3:46759203-46759222 MsG0380013857.01.T01:CDS 45.0%
CTGATGCACCTAAAGGGAAA+AGG - Chr3:46759473-46759492 MsG0380013857.01.T01:CDS 45.0%
GCCTTCTTCTTCTTCAGCTT+GGG + Chr3:46759727-46759746 None:intergenic 45.0%
GGACTTTCCTCCCATCTTTA+AGG - Chr3:46759312-46759331 MsG0380013857.01.T01:CDS 45.0%
GGAGATTCACAACAGGATGT+TGG - Chr3:46758899-46758918 MsG0380013857.01.T01:CDS 45.0%
GGAGGAAGCTCTTGAAGAAA+TGG - Chr3:46759684-46759703 MsG0380013857.01.T01:CDS 45.0%
TCCCAAGCTGAAGAAGAAGA+AGG - Chr3:46759723-46759742 MsG0380013857.01.T01:CDS 45.0%
TCGAAGTCTCTACTGCTGAA+AGG - Chr3:46759188-46759207 MsG0380013857.01.T01:CDS 45.0%
TCTGATGCTGCTCCTACTAA+AGG - Chr3:46759514-46759533 MsG0380013857.01.T01:CDS 45.0%
TGCTAAAGGGAAAGGCAAGA+AGG - Chr3:46759417-46759436 MsG0380013857.01.T01:CDS 45.0%
TGCTCCTACTAAAGGCAAGA+AGG - Chr3:46759522-46759541 MsG0380013857.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG - Chr3:46758939-46758958 MsG0380013857.01.T01:CDS 45.0%
TGGGCCAACATATGTGAACT+TGG - Chr3:46758572-46758591 MsG0380013857.01.T01:CDS 45.0%
TTCTGACACAGCAACTGCTT+TGG + Chr3:46759443-46759462 None:intergenic 45.0%
! CCATAGGACTCACAAGTTGA+AGG + Chr3:46759753-46759772 None:intergenic 45.0%
! GCTTCTGTTGATTGTTGGGT+TGG + Chr3:46758971-46758990 None:intergenic 45.0%
! TCTTTATCAAGGAAGGGTGC+TGG - Chr3:46759126-46759145 MsG0380013857.01.T01:CDS 45.0%
!! GCTGTTTCTGATGCACCTAA+AGG - Chr3:46759466-46759485 MsG0380013857.01.T01:CDS 45.0%
!! GGGTGCTGGAGTTCTTAAAA+AGG - Chr3:46759140-46759159 MsG0380013857.01.T01:CDS 45.0%
AATCACTCAAGAGCAGCTGG+AGG - Chr3:46759666-46759685 MsG0380013857.01.T01:CDS 50.0%
AGCTTGTAGGATGGATGCAG+AGG - Chr3:46758779-46758798 MsG0380013857.01.T01:CDS 50.0%
AGTAGCTGAGTACGTCTTGG+AGG - Chr3:46759363-46759382 MsG0380013857.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG - Chr3:46758464-46758483 MsG0380013857.01.T01:CDS 50.0%
GAGGAAGCTGCTCTTGCTAA+AGG - Chr3:46759403-46759422 MsG0380013857.01.T01:CDS 50.0%
GCTGCTCTTGCTAAAGGGAA+AGG - Chr3:46759409-46759428 MsG0380013857.01.T01:CDS 50.0%
GCTTGTAGGATGGATGCAGA+GGG - Chr3:46758780-46758799 MsG0380013857.01.T01:CDS 50.0%
GGTAATCACTCAAGAGCAGC+TGG - Chr3:46759663-46759682 MsG0380013857.01.T01:CDS 50.0%
! CTGGCCTTCTTGCCTTTAGT+AGG + Chr3:46759529-46759548 None:intergenic 50.0%
! GTTCTGGCCCTTTTCCCTTT+AGG + Chr3:46759484-46759503 None:intergenic 50.0%
ACGTCTTGGAGGAAGATGCG+AGG - Chr3:46759374-46759393 MsG0380013857.01.T01:CDS 55.0%
GGAAGATGCGAGGTCTCAGG+AGG - Chr3:46759384-46759403 MsG0380013857.01.T01:CDS 60.0%
GGAGGAAGATGCGAGGTCTC+AGG - Chr3:46759381-46759400 MsG0380013857.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 46758351 46759837 46758351 ID=MsG0380013857.01;Name=MsG0380013857.01
Chr3 mRNA 46758351 46759837 46758351 ID=MsG0380013857.01.T01;Parent=MsG0380013857.01;Name=MsG0380013857.01.T01;_AED=0.50;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|468
Chr3 exon 46759047 46759837 46759047 ID=MsG0380013857.01.T01:exon:25952;Parent=MsG0380013857.01.T01
Chr3 exon 46758351 46758963 46758351 ID=MsG0380013857.01.T01:exon:25951;Parent=MsG0380013857.01.T01
Chr3 CDS 46759047 46759837 46759047 ID=MsG0380013857.01.T01:cds;Parent=MsG0380013857.01.T01
Chr3 CDS 46758351 46758963 46758351 ID=MsG0380013857.01.T01:cds;Parent=MsG0380013857.01.T01
Gene Sequence

>MsG0380013857.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACATCAAACAAGCAAAGCGTATCAGAATCTGGGTCCATCTACAAAGAGAAGACTATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCACTCAAGAAGTATGAAGTAAACATGGAAGGATTGATAGAGACTCAGATGCTGTCTGAGTATTTCAAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTCGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAAATGGTCATGGATATGAATCCTACATCATTTGATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACCATCACTGAGGACGTTATAGCTAAAGCTTGTAGGATGGATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTACAAGGTTACTACAACACTCTTTTGGGTGGGAAGAAAGATGCAAAGCCTTCTGAAATGGAGATTCACAACAGGATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGATCTGACCAACCCAACAATCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAACTTCCCAAGATATGTAATGGATCATCTCTGCTGGGCCATAAATGAAAGCACTATCAGAGGAAGAAAACAAGTACCCTATGGAAGATTGCTGTCTGAAATCTTTATCAAGGAAGGGAGCTTATGCTCTATGAAGTTCATCAAAGAAGCCCCTAAAGATGAAAAGTGGTTAGAGATGACAACTGCTGAAACTGAGATAATCAGGGACTTTCCTCCCATCTTTAAGGAAAGTGACTCTGATTTCCTAGTTCAATCAGTAGCTGAGTACGTCTTGGAGGAAGATGCGAGGTCTCAGGAGGAAGCTGCTCTTGCTAAAGGGAAAGGCAAGAAGGCCAAAGCAGTTGCTGTGTCAGAAGCTGCTGTTTCTGATGCACCTAAAGGGAAAAGGGCCAGAACTAGTTCTGAATCTGATGCTGCTCCTACTAAAGGCAAGAAGGCCAGAACTAGTACTGAGTCAGAAGCTGCTAAACCTGTTTCTATCAAGGAAAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCATCGAAGAGAAGAAAAGGTAAGGCAGACTTGGTAATCACTCAAGAGCAGCTGGAGGAAGCTCTTGAAGAAATGGAGAAAGAAGAGGCTGATCCCAAGCTGAAGAAGAAGAAGGCTCCCCTTCAACTTGTGAGTCCTATGGTTGAGATGACTCCAATAAGGAAAAGGATGGCAGATGAACGTGCTTCTGAACTTATTTCAGACAAA
Protein sequence

>MsG0380013857.01.T01

MASSSSKVSESTSNKQSVSESGSIYKEKTMDIPWESLIVQVESPVDFASLKKYEVNMEGLIETQMLSEYFKMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKMVMDMNPTSFDSLEIRSEVMGIPITITEDVIAKACRMDAEGRFQEIVRKEDVLLQGYYNTLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMAILEKINFPRYVMDHLCWAINESTIRGRKQVPYGRLLSEIFIKEGSLCSMKFIKEAPKDEKWLEMTTAETEIIRDFPPIFKESDSDFLVQSVAEYVLEEDARSQEEAALAKGKGKKAKAVAVSEAAVSDAPKGKRARTSSESDAAPTKGKKARTSTESEAAKPVSIKEKGKMQKVGAASIPSKRRKGKADLVITQEQLEEALEEMEKEEADPKLKKKKAPLQLVSPMVEMTPIRKRMADERASELISDK