AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009289.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009289.01.T01 MTR_2g059200 97.901 953 20 0 1 953 1 953 0.0 1933
MsG0280009289.01.T01 MTR_8g432590 90.244 82 8 0 15 96 65 146 4.14e-42 152
MsG0280009289.01.T01 MTR_2g090685 86.567 67 9 0 27 93 3 69 1.06e-31 118
MsG0280009289.01.T01 MTR_4g119620 26.316 228 146 4 51 266 16 233 2.02e-17 85.1
MsG0280009289.01.T01 MTR_4g119620 23.849 239 171 5 61 295 77 308 3.21e-15 78.6
MsG0280009289.01.T01 MTR_1g072140 25.000 220 156 2 48 266 13 224 3.19e-17 84.3
MsG0280009289.01.T01 MTR_5g016370 21.552 348 197 8 15 296 244 581 2.71e-14 77.4
MsG0280009289.01.T01 MTR_5g016370 25.217 230 135 4 23 223 371 592 1.95e-12 71.6
MsG0280009289.01.T01 MTR_4g095058 22.896 297 163 7 57 296 275 562 9.23e-14 75.9
MsG0280009289.01.T01 MTR_4g095058 27.326 172 108 2 61 223 410 573 9.46e-12 69.3
MsG0280009289.01.T01 MTR_4g095058 22.896 297 163 7 57 296 277 564 9.27e-14 75.9
MsG0280009289.01.T01 MTR_4g095058 27.326 172 108 2 61 223 412 575 1.02e-11 69.3
MsG0280009289.01.T01 MTR_7g076230 28.070 228 136 7 61 267 410 630 2.25e-13 75.1
MsG0280009289.01.T01 MTR_1g097140 24.910 277 198 5 12 287 74 341 2.93e-13 73.2
MsG0280009289.01.T01 MTR_5g022690 25.893 224 143 5 65 273 183 398 4.72e-13 73.2
MsG0280009289.01.T01 MTR_6g004040 26.794 209 144 3 61 268 15 215 8.02e-13 73.2
MsG0280009289.01.T01 MTR_5g016350 24.576 236 141 4 17 223 289 516 1.53e-12 71.6
MsG0280009289.01.T01 MTR_5g016350 21.631 282 162 5 65 296 233 505 1.69e-12 71.6
MsG0280009289.01.T01 MTR_5g016350 21.631 282 162 5 65 296 297 569 1.56e-12 71.6
MsG0280009289.01.T01 MTR_5g016350 24.576 236 141 4 17 223 353 580 1.99e-12 71.6
MsG0280009289.01.T01 MTR_2g012630 26.778 239 154 6 68 294 12 241 2.84e-12 71.6
MsG0280009289.01.T01 MTR_2g012630 26.778 239 154 6 68 294 12 241 3.21e-12 71.2
MsG0280009289.01.T01 MTR_2g436510 25.954 131 97 0 56 186 164 294 3.80e-11 67.0
MsG0280009289.01.T01 MTR_3g045130 27.014 211 142 5 65 273 275 475 6.92e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009289.01.T01 AT3G42660 58.824 969 366 13 1 952 1 953 0.0 1126
MsG0280009289.01.T01 AT5G67320 23.677 359 189 10 6 296 258 599 4.12e-18 89.7
MsG0280009289.01.T01 AT5G67320 25.000 236 140 4 17 223 383 610 1.20e-11 68.9
MsG0280009289.01.T01 AT4G02730 26.217 267 174 8 12 268 79 332 8.67e-17 83.2
MsG0280009289.01.T01 AT2G41500 26.908 249 161 9 22 265 261 493 5.93e-15 79.3
MsG0280009289.01.T01 AT2G41500 25.701 214 141 5 65 273 258 458 2.25e-13 74.3
MsG0280009289.01.T01 AT2G41500 26.908 249 161 9 22 265 261 493 5.93e-15 79.3
MsG0280009289.01.T01 AT2G41500 25.701 214 141 5 65 273 258 458 2.25e-13 74.3
MsG0280009289.01.T01 AT1G71840 23.846 260 188 3 61 316 112 365 1.06e-14 77.8
MsG0280009289.01.T01 AT3G18130 28.017 232 149 7 54 279 55 274 7.92e-14 74.3
MsG0280009289.01.T01 AT5G23430 27.119 236 162 4 61 294 15 242 8.86e-14 76.3
MsG0280009289.01.T01 AT5G23430 27.119 236 162 4 61 294 15 242 8.86e-14 76.3
MsG0280009289.01.T01 AT5G23430 27.119 236 162 4 61 294 15 242 9.18e-14 76.3
MsG0280009289.01.T01 AT1G48630 27.586 232 150 7 54 279 55 274 9.25e-14 73.9
MsG0280009289.01.T01 AT5G08390 26.695 236 163 4 61 294 15 242 9.51e-14 76.3
MsG0280009289.01.T01 AT1G11160 26.877 253 174 5 61 310 14 258 1.30e-13 75.9
MsG0280009289.01.T01 AT1G11160 26.877 253 174 5 61 310 14 258 1.38e-13 75.9
MsG0280009289.01.T01 AT1G11160 26.877 253 174 5 61 310 14 258 1.47e-13 75.9
MsG0280009289.01.T01 AT3G49660 22.892 249 183 4 61 306 70 312 2.97e-13 72.4
MsG0280009289.01.T01 AT1G18080 28.571 231 150 6 54 279 55 275 3.85e-13 72.0
MsG0280009289.01.T01 AT1G11160 28.230 209 140 4 104 310 16 216 4.09e-12 70.9
MsG0280009289.01.T01 AT1G61210 26.291 213 135 4 68 268 12 214 8.92e-12 70.1
MsG0280009289.01.T01 AT1G61210 26.291 213 135 4 68 268 12 214 1.06e-11 69.7
MsG0280009289.01.T01 AT1G61210 26.291 213 135 4 68 268 12 214 1.22e-11 69.7
MsG0280009289.01.T01 AT5G25150 26.222 225 151 5 106 329 420 630 1.95e-11 68.6
MsG0280009289.01.T01 AT5G25150 26.222 225 151 5 106 329 420 630 2.14e-11 68.6
MsG0280009289.01.T01 AT4G29830 26.587 252 151 9 61 291 59 297 8.60e-11 65.1

Find 236 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTTTAGTGAGGAAAATT+TGG 0.144511 2:-49544446 MsG0280009289.01.T01:CDS
TGCTCTGAAACTTCCAAATT+TGG 0.174508 2:-49541537 MsG0280009289.01.T01:CDS
CCATCAATGACTGACCATTT+TGG 0.202687 2:-49544021 MsG0280009289.01.T01:CDS
AATTCCACTTGTCTTGCTTC+TGG 0.223494 2:-49546225 MsG0280009289.01.T01:CDS
GAAGCAAGACAAGTGGAATT+AGG 0.236177 2:+49546228 None:intergenic
TTGTTGCACTTGGTGCTTCT+TGG 0.257366 2:-49543457 MsG0280009289.01.T01:CDS
TGATGACGATGCTTTCAATT+TGG 0.265584 2:-49541783 MsG0280009289.01.T01:CDS
TTACTAGCCCAGCTACTAAA+TGG 0.269301 2:+49543910 None:intergenic
TTATGGGAAAGTACGGTATA+TGG 0.279052 2:-49544660 MsG0280009289.01.T01:CDS
GGTTCTTCTTTAAGTTGGTT+TGG 0.286725 2:-49542697 MsG0280009289.01.T01:CDS
GTTCTTCTTTAAGTTGGTTT+GGG 0.286739 2:-49542696 MsG0280009289.01.T01:CDS
TTACTTCCGTTAACAATTGC+AGG 0.291620 2:+49541188 None:intergenic
CTCCAGTGCAGCCTGGAAAA+AGG 0.297942 2:-49544258 MsG0280009289.01.T01:CDS
AGGGAGGCCCACACCCAAAA+AGG 0.303132 2:-49546417 MsG0280009289.01.T01:CDS
AGATTATATACAAGTCAATT+TGG 0.307094 2:-49542520 MsG0280009289.01.T01:CDS
GAAGCTGGTTCCCAGTCTTC+AGG 0.312420 2:-49542495 MsG0280009289.01.T01:intron
CATACCTGTGGGAAGGATTC+AGG 0.312836 2:+49542294 None:intergenic
CTTGGCTGTTATTGATGTTA+TGG 0.318490 2:-49544677 MsG0280009289.01.T01:CDS
GAGAAGTTGTTCACTCTTAG+AGG 0.323210 2:-49544874 MsG0280009289.01.T01:CDS
AATAGATGCTTTCGATGTTT+CGG 0.338697 2:+49541295 None:intergenic
TGGATAAGCAGATTCTGATA+TGG 0.342133 2:-49544783 MsG0280009289.01.T01:CDS
TAACCATGAATGTTCTTTGC+TGG 0.344332 2:-49544969 MsG0280009289.01.T01:CDS
TCCACTTGCTACATCTGATC+TGG 0.348710 2:-49542137 MsG0280009289.01.T01:CDS
GATGAGGATGGAGAAGAATA+TGG 0.350077 2:-49544424 MsG0280009289.01.T01:CDS
TGTTGCACTTGGTGCTTCTT+GGG 0.357823 2:-49543456 MsG0280009289.01.T01:CDS
GGTGAGACCTTGGCCATTCC+CGG 0.357915 2:-49544937 MsG0280009289.01.T01:CDS
GTTAAACTCTACAAATTTCC+AGG 0.358029 2:-49546186 MsG0280009289.01.T01:intron
GATGCTAGGTATTCACCATT+AGG 0.362149 2:+49545090 None:intergenic
CTTCCTTCTGCTCGCTCGTA+TGG 0.374034 2:-49546386 MsG0280009289.01.T01:CDS
GGGCCAGCGGTGACTGCATC+AGG 0.376816 2:-49543115 MsG0280009289.01.T01:CDS
AAAGAAGAACCAGGAGTTAT+CGG 0.379136 2:+49542709 None:intergenic
TTCTTGTGAGACTCAACCTT+TGG 0.379372 2:+49544388 None:intergenic
AAGCAAGACAAGTGGAATTA+GGG 0.380027 2:+49546229 None:intergenic
TGCTGGGCAAGAACGGTAAT+GGG 0.381945 2:-49544588 MsG0280009289.01.T01:CDS
TGGAAATTTGTAGAGTTTAA+CGG 0.383702 2:+49546188 None:intergenic
TGACAAATCGGAGCCTAGTT+TGG 0.385690 2:-49541060 MsG0280009289.01.T01:CDS
AGATTCATTAAAGTGAGAAT+TGG 0.387058 2:+49542166 None:intergenic
GGGCACAGAGGACCAGTTAC+TGG 0.392112 2:-49545126 MsG0280009289.01.T01:CDS
GGCTTAGCTTTCGACCCTAA+TGG 0.392417 2:-49545105 MsG0280009289.01.T01:CDS
AATAAACCTGCAATTGTTAA+CGG 0.395713 2:-49541194 MsG0280009289.01.T01:CDS
AGAAAACAGATGAAAACTAT+TGG 0.398678 2:-49542365 MsG0280009289.01.T01:CDS
CAGCCATTGTAAATCCAAAA+TGG 0.401990 2:+49544007 None:intergenic
GAAGAGGACAATAGTGTTAG+TGG 0.403080 2:-49544544 MsG0280009289.01.T01:CDS
TGTATCGCCCATTTAGTAGC+TGG 0.403756 2:-49543918 MsG0280009289.01.T01:CDS
TCCTCATCCACTTGGTTCCT+CGG 0.404571 2:-49541108 MsG0280009289.01.T01:CDS
ATGATGTCGTGATGTATGAT+AGG 0.404756 2:-49544906 MsG0280009289.01.T01:CDS
CTCCTGGTTCTTCTTTAAGT+TGG 0.405985 2:-49542702 MsG0280009289.01.T01:CDS
TTGTCTTTCCTCAAATGATC+AGG 0.406091 2:-49543053 MsG0280009289.01.T01:intron
CAACTGGAACCGTTATCATC+TGG 0.410565 2:-49545059 MsG0280009289.01.T01:CDS
TTGGCTGTTATTGATGTTAT+GGG 0.411330 2:-49544676 MsG0280009289.01.T01:CDS
ATTAAAGTGAGAATTGGTTT+AGG 0.411799 2:+49542172 None:intergenic
ATGCTGGGCAAGAACGGTAA+TGG 0.413782 2:-49544589 MsG0280009289.01.T01:CDS
TGTCAGGAGCTATGCCCTTA+AGG 0.415559 2:+49545007 None:intergenic
CTAGCATCTCTTGATTCAAC+TGG 0.418413 2:-49545075 MsG0280009289.01.T01:CDS
AAGCTCATAAACACAGTTGA+TGG 0.420082 2:-49545171 MsG0280009289.01.T01:CDS
CGGTGGTGACGGAGAATCTT+GGG 0.420399 2:+49546279 None:intergenic
GTACATGGCTACCTCTGGTT+TGG 0.421088 2:-49544803 MsG0280009289.01.T01:CDS
CAAGCGACCTCGAAGGGGTT+GGG 0.421199 2:+49542732 None:intergenic
CCGTGACGGTGTTACTGCTT+TGG 0.422664 2:-49546259 MsG0280009289.01.T01:CDS
CTTGTTGGTGTCACCAAACT+AGG 0.423697 2:+49541047 None:intergenic
AGAAATGGATAATGCTGGTT+TGG 0.423905 2:-49541819 MsG0280009289.01.T01:CDS
TACACTTCCAATACGTTCCC+TGG 0.425998 2:-49545247 MsG0280009289.01.T01:CDS
GAACAGCATGCATCTCTTTG+AGG 0.430946 2:-49542083 MsG0280009289.01.T01:intron
TCGAAAGCTAAGCCAGTAAC+TGG 0.431266 2:+49545114 None:intergenic
CCAAAATGGTCAGTCATTGA+TGG 0.435480 2:+49544021 None:intergenic
GGATAAGCAGATTCTGATAT+GGG 0.435550 2:-49544782 MsG0280009289.01.T01:CDS
TTCCTTTCTTGTTAAATGCC+AGG 0.435661 2:+49545229 None:intergenic
ATGCAGGAGGCATTTCAATC+AGG 0.439351 2:-49544286 MsG0280009289.01.T01:CDS
TTCTTATGCTATAATATGCT+TGG 0.446573 2:-49544232 MsG0280009289.01.T01:CDS
ATGGCCAAGGTCTCACCATC+AGG 0.448966 2:+49544943 None:intergenic
TGGAATCGTACGAACACAAT+TGG 0.452394 2:+49542659 None:intergenic
TTAAATGCCAGGGAACGTAT+TGG 0.453626 2:+49545240 None:intergenic
CGAATAATGAACCTGAAGAC+TGG 0.453651 2:+49542484 None:intergenic
CTTTACTGAAGGTGGTATGC+AGG 0.457551 2:-49543399 MsG0280009289.01.T01:intron
GCATGGCATGGAAGCCAATC+GGG 0.457931 2:-49544705 MsG0280009289.01.T01:CDS
ATGCTAGGTATTCACCATTA+GGG 0.459739 2:+49545091 None:intergenic
AGTGGGAGCTTGAGTGATCT+TGG 0.460458 2:-49544526 MsG0280009289.01.T01:CDS
AACCGAGGATATACCTATGC+TGG 0.460848 2:-49544605 MsG0280009289.01.T01:CDS
CTCTATTGCGAGGGTTCTGA+AGG 0.463473 2:-49545148 MsG0280009289.01.T01:CDS
ACGGTGGTGACGGAGAATCT+TGG 0.464340 2:+49546278 None:intergenic
CAAGTCAATTTGGTGGAAGC+TGG 0.465628 2:-49542510 MsG0280009289.01.T01:CDS
TCCCTGGCATTTAACAAGAA+AGG 0.469890 2:-49545231 MsG0280009289.01.T01:CDS
TTTGTTTGATGAGGAGGAAG+AGG 0.476168 2:-49544560 MsG0280009289.01.T01:CDS
ACTCCAGCAAAGAACATTCA+TGG 0.476172 2:+49544966 None:intergenic
GAAGTAAAGGTTGTTGCACT+TGG 0.479760 2:-49543467 MsG0280009289.01.T01:CDS
GAGGAAAATTTGGATGAGGA+TGG 0.480421 2:-49544436 MsG0280009289.01.T01:CDS
GGTAGCCATGTACTTTCCAT+TGG 0.481463 2:+49544813 None:intergenic
TGAACAAACCTGATCATTTG+AGG 0.482234 2:+49543045 None:intergenic
GGTAGAGTATCTGATGTAAT+GGG 0.486268 2:+49541332 None:intergenic
GGTGACTGCATCAGGTTTCA+AGG 0.489131 2:-49543107 MsG0280009289.01.T01:CDS
TTCCTTCTGCTCGCTCGTAT+GGG 0.490581 2:-49546385 MsG0280009289.01.T01:CDS
GAAAGGTAAGGAGGCAATGC+AGG 0.491246 2:-49541135 MsG0280009289.01.T01:CDS
AAAAGATCTAACCCAGTGTC+AGG 0.492289 2:+49544991 None:intergenic
ATCATCTGGGAACTCCACTC+AGG 0.492318 2:-49545045 MsG0280009289.01.T01:CDS
ACACAAGAGGCAGCTAAAGA+TGG 0.492651 2:-49541221 MsG0280009289.01.T01:CDS
AACGATGGTGCAGACAAGTT+TGG 0.493330 2:+49541260 None:intergenic
ATTGATGTTATGGGAAAGTA+CGG 0.494652 2:-49544667 MsG0280009289.01.T01:CDS
TAGTTTATTTAATATAGCAC+AGG 0.495122 2:-49542758 MsG0280009289.01.T01:CDS
TACTAGCCCAGCTACTAAAT+GGG 0.495184 2:+49543911 None:intergenic
TGCATGGCATGGAAGCCAAT+CGG 0.495392 2:-49544706 MsG0280009289.01.T01:CDS
AGGTTGAGTCTCACAAGAAA+AGG 0.495792 2:-49544384 MsG0280009289.01.T01:CDS
AAACCTGATGCAGTCACCGC+TGG 0.495964 2:+49543112 None:intergenic
TCCTTTCTTGTTAAATGCCA+GGG 0.497517 2:+49545230 None:intergenic
AGGTAGAGTATCTGATGTAA+TGG 0.501567 2:+49541331 None:intergenic
AATGGATTGGACGGTCTTGT+TGG 0.505573 2:+49541032 None:intergenic
AGAATCTTGGGAGCGGAAGA+AGG 0.505811 2:+49546291 None:intergenic
CAGGCTCCTCCTCATCCACT+TGG 0.506515 2:-49541116 MsG0280009289.01.T01:CDS
GGTCGCTTGCCGATAACTCC+TGG 0.508021 2:-49542718 MsG0280009289.01.T01:CDS
AACTGGAACCGTTATCATCT+GGG 0.510104 2:-49545058 MsG0280009289.01.T01:CDS
GTTCTTTGCTGGAGTCCTGA+TGG 0.510656 2:-49544958 MsG0280009289.01.T01:CDS
CACAAGATAGATGCATACTA+AGG 0.512296 2:-49541754 MsG0280009289.01.T01:CDS
CTTTGAAAGCGAAGAAGTAA+AGG 0.514274 2:-49543480 MsG0280009289.01.T01:CDS
GACATGTAATTTCGCTCGAT+GGG 0.514661 2:-49543135 MsG0280009289.01.T01:CDS
GGAAAGTACATGGCTACCTC+TGG 0.516488 2:-49544808 MsG0280009289.01.T01:CDS
GCAAGCGACCTCGAAGGGGT+TGG 0.516900 2:+49542731 None:intergenic
GTCTTTGCAAATCCTTGCAA+GGG 0.517625 2:-49543964 MsG0280009289.01.T01:CDS
GGCTCCGATTTGTCAACTCC+AGG 0.517692 2:+49541068 None:intergenic
ATGGGATGTTGATAAGAAGC+AGG 0.517698 2:-49544764 MsG0280009289.01.T01:CDS
TATGGGAAAGTACGGTATAT+GGG 0.518069 2:-49544659 MsG0280009289.01.T01:CDS
CTATGCCCTTAAGGTTGTGA+AGG 0.518660 2:+49545016 None:intergenic
ATGGAAGAAATGGATAATGC+TGG 0.520031 2:-49541824 MsG0280009289.01.T01:CDS
GTAGCCATGTACTTTCCATT+GGG 0.521987 2:+49544814 None:intergenic
CGTCTTTGCAAATCCTTGCA+AGG 0.522000 2:-49543965 MsG0280009289.01.T01:CDS
GGATCAACTCCAGTGCAGCC+TGG 0.523363 2:-49544265 MsG0280009289.01.T01:CDS
TAGTGAGGAAAATTTGGATG+AGG 0.523417 2:-49544440 MsG0280009289.01.T01:CDS
GTTAACGGAAGTAAGAAGTC+AGG 0.525847 2:-49541179 MsG0280009289.01.T01:CDS
AGACATGTAATTTCGCTCGA+TGG 0.526180 2:-49543136 MsG0280009289.01.T01:CDS
TAAGCCTGGAGTTGACAAAT+CGG 0.527134 2:-49541072 MsG0280009289.01.T01:CDS
TTTCAATCCGGGAATGGCCA+AGG 0.527495 2:+49544930 None:intergenic
ATCTATGAAGTCTCCAACCG+AGG 0.527863 2:-49544620 MsG0280009289.01.T01:CDS
TAAATATATTCATTTCATTG+AGG 0.528215 2:+49541001 None:intergenic
TGGTTTGGGTTTAGTGAAGA+GGG 0.530246 2:-49542682 MsG0280009289.01.T01:CDS
TGCACTTGGTGCTTCTTGGG+TGG 0.530648 2:-49543453 MsG0280009289.01.T01:CDS
CCACTTGCTACATCTGATCT+GGG 0.530933 2:-49542136 MsG0280009289.01.T01:CDS
CTTCGCATCTTTACTGAAGG+TGG 0.534257 2:-49543407 MsG0280009289.01.T01:CDS
GTTGGAGACTTCATAGATGA+AGG 0.534620 2:+49544625 None:intergenic
GATGAAAACTATTGGATGGT+GGG 0.534675 2:-49542357 MsG0280009289.01.T01:CDS
ATGGCTGCATTGAATGAGAA+TGG 0.535036 2:-49543991 MsG0280009289.01.T01:CDS
ACAGCCAAGGCGTTCCCGAT+TGG 0.535531 2:+49544691 None:intergenic
ACCGAGGAACCAAGTGGATG+AGG 0.538357 2:+49541107 None:intergenic
GGAAGCATGTTAGCAGCTGC+AGG 0.541179 2:-49545210 MsG0280009289.01.T01:CDS
GTATCGCCCATTTAGTAGCT+GGG 0.541424 2:-49543917 MsG0280009289.01.T01:CDS
AGCATAGGTATATCCTCGGT+TGG 0.541520 2:+49544607 None:intergenic
TTATATACAAGTCAATTTGG+TGG 0.544468 2:-49542517 MsG0280009289.01.T01:CDS
AGTTTGAGCCACCAACTAGC+AGG 0.544933 2:-49544486 MsG0280009289.01.T01:CDS
TATCGGCAAGCGACCTCGAA+GGG 0.545161 2:+49542726 None:intergenic
GGAGGCGGTGACGAGATGTT+CGG 0.545645 2:+49546353 None:intergenic
AAGGGCATAGCTCCTGACAC+TGG 0.547665 2:-49545003 MsG0280009289.01.T01:CDS
GAGTCCTGATGGTGAGACCT+TGG 0.548862 2:-49544947 MsG0280009289.01.T01:CDS
AGTCTCACAAGAAAAGGAAC+CGG 0.550686 2:-49544378 MsG0280009289.01.T01:CDS
GTAAAGTCGACAAATAAGCC+TGG 0.552812 2:-49541086 MsG0280009289.01.T01:CDS
ATACCTATGCTGGGCAAGAA+CGG 0.553331 2:-49544595 MsG0280009289.01.T01:CDS
AAATTGGATAATGGCAGTGT+GGG 0.553910 2:-49544343 MsG0280009289.01.T01:CDS
TGGAATTGATCTGTTTCCAA+AGG 0.555631 2:-49544404 MsG0280009289.01.T01:CDS
GGATACATCGGAAGAGGAGG+CGG 0.556062 2:+49546338 None:intergenic
ATCCCATACGAGCGAGCAGA+AGG 0.557686 2:+49546383 None:intergenic
AAAGAGTGTGTTGCATGGCA+TGG 0.557928 2:-49544717 MsG0280009289.01.T01:CDS
GAGCGGAAGAAGGAAGAAGA+GGG 0.558186 2:+49546301 None:intergenic
TAACACCGTCACGGTGGTGA+CGG 0.561568 2:+49546268 None:intergenic
AGGTCCGATTAATGAAAATG+AGG 0.564038 2:-49546437 MsG0280009289.01.T01:CDS
GAAGCCAATCGGGAACGCCT+TGG 0.565345 2:-49544695 MsG0280009289.01.T01:CDS
ATTGTGTTCGTACGATTCCA+AGG 0.567577 2:-49542656 MsG0280009289.01.T01:intron
GCAGCTGCAGGTGACGATGA+AGG 0.567667 2:-49545198 MsG0280009289.01.T01:CDS
AAAATTCAACGACATATTGG+AGG 0.570969 2:-49541510 MsG0280009289.01.T01:intron
CAGGGGACCCAACCCCTTCG+AGG 0.571418 2:-49542739 MsG0280009289.01.T01:CDS
CGATGGATACTCTCATATTG+AGG 0.571779 2:-49544188 MsG0280009289.01.T01:intron
TTGGTTTGGGTTTAGTGAAG+AGG 0.571951 2:-49542683 MsG0280009289.01.T01:CDS
GATGAAACAAGTGACAAGAA+AGG 0.573820 2:-49541152 MsG0280009289.01.T01:CDS
TACTAAATGGGCGATACATG+AGG 0.574321 2:+49543923 None:intergenic
TATCTTCGCATCTTTACTGA+AGG 0.575360 2:-49543410 MsG0280009289.01.T01:CDS
AACAGATGAAAACTATTGGA+TGG 0.577637 2:-49542361 MsG0280009289.01.T01:CDS
ACCGAGGATATACCTATGCT+GGG 0.578472 2:-49544604 MsG0280009289.01.T01:CDS
GGAGCGGAAGAAGGAAGAAG+AGG 0.578766 2:+49546300 None:intergenic
TCTATTGCGAGGGTTCTGAA+GGG 0.578940 2:-49545147 MsG0280009289.01.T01:CDS
GTGGAGTTCCCAGATGATAA+CGG 0.580232 2:+49545050 None:intergenic
CGAGACGGATACATCGGAAG+AGG 0.580447 2:+49546332 None:intergenic
GCCCAGCATAGGTATATCCT+CGG 0.582504 2:+49544603 None:intergenic
GTTTCGGCCTTGCTACTGCT+AGG 0.582630 2:+49541311 None:intergenic
CCCAGATCAGATGTAGCAAG+TGG 0.582990 2:+49542136 None:intergenic
GCGCAAACATTCCTTTAGTG+AGG 0.586838 2:-49544455 MsG0280009289.01.T01:CDS
AAGAGGACAATAGTGTTAGT+GGG 0.587443 2:-49544543 MsG0280009289.01.T01:CDS
AGATGAAAACTATTGGATGG+TGG 0.590296 2:-49542358 MsG0280009289.01.T01:CDS
AACAAGTGACAAGAAAGGTA+AGG 0.591817 2:-49541147 MsG0280009289.01.T01:CDS
GTCACCCAATGGAAAGTACA+TGG 0.592946 2:-49544818 MsG0280009289.01.T01:CDS
AAAATTGGATAATGGCAGTG+TGG 0.593309 2:-49544344 MsG0280009289.01.T01:CDS
TCCTACTCATACCTGTGGGA+AGG 0.593854 2:+49542287 None:intergenic
GGTCCGATTAATGAAAATGA+GGG 0.598484 2:-49546436 MsG0280009289.01.T01:CDS
TACTCTACCTAGCAGTAGCA+AGG 0.601773 2:-49541318 MsG0280009289.01.T01:CDS
GACGGATACATCGGAAGAGG+AGG 0.604290 2:+49546335 None:intergenic
ATTTGAGGAAAGACAATCAG+AGG 0.607909 2:+49543060 None:intergenic
AGGGCATAGCTCCTGACACT+GGG 0.608009 2:-49545002 MsG0280009289.01.T01:CDS
CAGTTGATGGCTCTATTGCG+AGG 0.608261 2:-49545158 MsG0280009289.01.T01:CDS
GTGACGGAGAATCTTGGGAG+CGG 0.612948 2:+49546284 None:intergenic
TTACCGTTCTTGCCCAGCAT+AGG 0.613307 2:+49544592 None:intergenic
AGTTGATGGCTCTATTGCGA+GGG 0.613425 2:-49545157 MsG0280009289.01.T01:CDS
GAATAATGAACCTGAAGACT+GGG 0.614155 2:+49542485 None:intergenic
GATCTTGGTGAAAATAGTAA+CGG 0.614158 2:-49544511 MsG0280009289.01.T01:CDS
AGATCCAGAAGCAAGACAAG+TGG 0.620556 2:+49546221 None:intergenic
CGAGCGAGCAGAAGGAAGCA+CGG 0.620562 2:+49546391 None:intergenic
AGTTTATTTAATATAGCACA+GGG 0.621130 2:-49542757 MsG0280009289.01.T01:CDS
CTATTGCGAGGGTTCTGAAG+GGG 0.622265 2:-49545146 MsG0280009289.01.T01:CDS
TCACTGGAGAAATCAATGAA+AGG 0.622381 2:-49541578 MsG0280009289.01.T01:CDS
TCATCTGGGAACTCCACTCA+GGG 0.626506 2:-49545044 MsG0280009289.01.T01:CDS
TTATCGGCAAGCGACCTCGA+AGG 0.627216 2:+49542725 None:intergenic
CATAACATCAATAACAGCCA+AGG 0.627343 2:+49544678 None:intergenic
AAAGCCTGAATCCTTCCCAC+AGG 0.629084 2:-49542298 MsG0280009289.01.T01:intron
AACGGAAGTAAGAAGTCAGG+AGG 0.634120 2:-49541176 MsG0280009289.01.T01:CDS
GAGGAACCAAGTGGATGAGG+AGG 0.635341 2:+49541110 None:intergenic
AAGAGGGTTATGAATCGAGA+CGG 0.637900 2:+49546317 None:intergenic
TCTTTGCAAATCCTTGCAAG+GGG 0.640160 2:-49543963 MsG0280009289.01.T01:CDS
ACTAAATGGGCGATACATGA+GGG 0.641700 2:+49543924 None:intergenic
GACTACGGATACCAACCTCA+AGG 0.642859 2:-49541369 MsG0280009289.01.T01:CDS
ATGAATCGAGACGGATACAT+CGG 0.643428 2:+49546326 None:intergenic
CAGTTGAATCAAGAGATGCT+AGG 0.644163 2:+49545076 None:intergenic
CGATGAAAGAGTGTGTTGCA+TGG 0.658186 2:-49544722 MsG0280009289.01.T01:CDS
AAGTGACAAGAAAGGTAAGG+AGG 0.659061 2:-49541144 MsG0280009289.01.T01:CDS
TCAGTCATTGATGGAACTCG+AGG 0.666562 2:+49544030 None:intergenic
ATTCTCCGTCACCACCGTGA+CGG 0.666683 2:-49546273 MsG0280009289.01.T01:CDS
ATCGGCAAGCGACCTCGAAG+GGG 0.667132 2:+49542727 None:intergenic
TGATGTCGTGATGTATGATA+GGG 0.673222 2:-49544905 MsG0280009289.01.T01:CDS
CTTATTTGTCGACTTTACCG+AGG 0.675996 2:+49541091 None:intergenic
GTATCCATCGTGATCGACAG+TGG 0.676967 2:+49544201 None:intergenic
AATTTCGCTCGATGGGCCAG+CGG 0.678863 2:-49543128 MsG0280009289.01.T01:CDS
CCGATTAATGAAAATGAGGG+AGG 0.678975 2:-49546433 MsG0280009289.01.T01:CDS
CCAAAGCAGTAACACCGTCA+CGG 0.679399 2:+49546259 None:intergenic
GACTTTACCGAGGAACCAAG+TGG 0.680993 2:+49541101 None:intergenic
AACCAACTTAAAGAAGAACC+AGG 0.685244 2:+49542700 None:intergenic
TAGCTGGGCTAGTAATAGCG+AGG 0.696226 2:-49543902 MsG0280009289.01.T01:intron
CTTTGCAAATCCTTGCAAGG+GGG 0.698368 2:-49543962 MsG0280009289.01.T01:CDS
AATCTGCTTATCCAAACCAG+AGG 0.701531 2:+49544792 None:intergenic
TGTGGGATTTAGAAGCACAA+TGG 0.706689 2:-49544326 MsG0280009289.01.T01:CDS
AGGGTTCTGAAGGGGCACAG+AGG 0.719017 2:-49545138 MsG0280009289.01.T01:CDS
AGTTCGAGACAAATATAACG+AGG 0.724881 2:-49545272 MsG0280009289.01.T01:CDS
ATAACCACTGTCGATCACGA+TGG 0.726404 2:-49544205 MsG0280009289.01.T01:CDS
AAGCAGTAACACCGTCACGG+TGG 0.770997 2:+49546262 None:intergenic
GTTTATTTAATATAGCACAG+GGG 0.779120 2:-49542756 MsG0280009289.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATCATTGTTATTA+AGG - Chr2:49541367-49541386 MsG0280009289.01.T01:CDS 10.0%
!!! TGAAATTTTAAATAAAATTG+GGG - Chr2:49541332-49541351 MsG0280009289.01.T01:CDS 10.0%
!! AATAGTATTCATATTTGAAA+TGG - Chr2:49545800-49545819 MsG0280009289.01.T01:intron 15.0%
!! ACTAAGATAATAATTTCAAA+AGG + Chr2:49544553-49544572 None:intergenic 15.0%
!!! ATAGTCATCAATTTTTTTTT+TGG - Chr2:49544581-49544600 MsG0280009289.01.T01:CDS 15.0%
!!! ATTTTGTATGTATAATATAC+AGG - Chr2:49544900-49544919 MsG0280009289.01.T01:CDS 15.0%
!!! GATTTTTTGTTTTGATTTTT+AGG - Chr2:49541300-49541319 MsG0280009289.01.T01:CDS 15.0%
!!! TAGTTAAATATTTAAAATGC+AGG - Chr2:49545593-49545612 MsG0280009289.01.T01:intron 15.0%
!!! TTTTGAAATTATTATCTTAG+TGG - Chr2:49544552-49544571 MsG0280009289.01.T01:CDS 15.0%
!!! TTTTGTATGTATAATATACA+GGG - Chr2:49544901-49544920 MsG0280009289.01.T01:CDS 15.0%
!! AAAGAAAAATAAAACACAAG+AGG - Chr2:49546217-49546236 MsG0280009289.01.T01:CDS 20.0%
!! AACAATGATAAGAAAAAACA+TGG + Chr2:49541975-49541994 None:intergenic 20.0%
!! ACAATGATAAGAAAAAACAT+GGG + Chr2:49541974-49541993 None:intergenic 20.0%
!! AGATTATATACAAGTCAATT+TGG - Chr2:49544931-49544950 MsG0280009289.01.T01:CDS 20.0%
!! AGTTTATTTAATATAGCACA+GGG - Chr2:49544694-49544713 MsG0280009289.01.T01:CDS 20.0%
!! ATTTAAGCTTCAATCATATA+TGG + Chr2:49543306-49543325 None:intergenic 20.0%
!! GATAAACAGTAAAATTAACA+TGG + Chr2:49541514-49541533 None:intergenic 20.0%
!! TAGTTTATTTAATATAGCAC+AGG - Chr2:49544693-49544712 MsG0280009289.01.T01:CDS 20.0%
!! TGATTTCTAATTCTTTACAT+TGG - Chr2:49541469-49541488 MsG0280009289.01.T01:intron 20.0%
!! TGTTCAACTTTCTATATATA+AGG - Chr2:49543848-49543867 MsG0280009289.01.T01:intron 20.0%
!!! ACTATTCTCTTTTATAATTC+AGG + Chr2:49545786-49545805 None:intergenic 20.0%
!!! ATATTTGAAATGGATATTTC+AGG - Chr2:49545810-49545829 MsG0280009289.01.T01:intron 20.0%
!!! GTTAATTTTACTGTTTATCA+AGG - Chr2:49541515-49541534 MsG0280009289.01.T01:CDS 20.0%
!!! TTATTTTTCTTTATGAACGA+TGG + Chr2:49546209-49546228 None:intergenic 20.0%
! AATAAACCTGCAATTGTTAA+CGG - Chr2:49546257-49546276 MsG0280009289.01.T01:CDS 25.0%
! AATGATTTAACTCATCCAAA+TGG + Chr2:49543335-49543354 None:intergenic 25.0%
! AGAAAACAGATGAAAACTAT+TGG - Chr2:49545086-49545105 MsG0280009289.01.T01:CDS 25.0%
! AGATTCATTAAAGTGAGAAT+TGG + Chr2:49545288-49545307 None:intergenic 25.0%
! AGCTTAAATTTATCTCCATT+TGG - Chr2:49543317-49543336 MsG0280009289.01.T01:intron 25.0%
! ATATATATTTCCAAACATGC+AGG - Chr2:49544660-49544679 MsG0280009289.01.T01:CDS 25.0%
! ATTATACATACAAAATCAGC+TGG + Chr2:49544896-49544915 None:intergenic 25.0%
! CAATGAAGTTAAAAAGACTA+CGG - Chr2:49546067-49546086 MsG0280009289.01.T01:intron 25.0%
! GAAGAACTTTGAATATTTGT+GGG + Chr2:49544505-49544524 None:intergenic 25.0%
! GATATTTGTGGAGATATTTA+AGG + Chr2:49541874-49541893 None:intergenic 25.0%
! GTCAAAGAAAAATTGGATAA+TGG - Chr2:49543099-49543118 MsG0280009289.01.T01:CDS 25.0%
! GTTTATTTAATATAGCACAG+GGG - Chr2:49544695-49544714 MsG0280009289.01.T01:CDS 25.0%
! TAATCTCTAACTTGAGATAT+AGG + Chr2:49541765-49541784 None:intergenic 25.0%
! TATGTATTAACAACCTTGTA+CGG - Chr2:49545973-49545992 MsG0280009289.01.T01:intron 25.0%
! TGAAGAACTTTGAATATTTG+TGG + Chr2:49544506-49544525 None:intergenic 25.0%
! TGGAAATTTGTAGAGTTTAA+CGG + Chr2:49541266-49541285 None:intergenic 25.0%
! TGTAATCTCTTCAAATCTAA+TGG - Chr2:49545399-49545418 MsG0280009289.01.T01:intron 25.0%
! TTATATACAAGTCAATTTGG+TGG - Chr2:49544934-49544953 MsG0280009289.01.T01:CDS 25.0%
! TTCTTATGCTATAATATGCT+TGG - Chr2:49543219-49543238 MsG0280009289.01.T01:intron 25.0%
!! AAATCTAATGGTCATTGTTT+TGG - Chr2:49545411-49545430 MsG0280009289.01.T01:intron 25.0%
!! ATTAAAGTGAGAATTGGTTT+AGG + Chr2:49545282-49545301 None:intergenic 25.0%
!! ATTTACCACAGAATTTTTCT+CGG - Chr2:49541696-49541715 MsG0280009289.01.T01:intron 25.0%
!! CAATATGTCGTTGAATTTTT+CGG + Chr2:49545940-49545959 None:intergenic 25.0%
!! CATCATAAACTCATTTTCAA+GGG + Chr2:49545349-49545368 None:intergenic 25.0%
!! TCATCATAAACTCATTTTCA+AGG + Chr2:49545350-49545369 None:intergenic 25.0%
!! TTTTGGATAAAATACTCATC+TGG - Chr2:49544598-49544617 MsG0280009289.01.T01:CDS 25.0%
!!! AATTTAATTTGTATACACCG+AGG + Chr2:49541938-49541957 None:intergenic 25.0%
!!! ATTTAATTTGTATACACCGA+GGG + Chr2:49541937-49541956 None:intergenic 25.0%
!!! TATAATTCAGGTTGCAATAA+AGG + Chr2:49545774-49545793 None:intergenic 25.0%
!!! TATACTGGACACATTTTTTA+TGG - Chr2:49543586-49543605 MsG0280009289.01.T01:intron 25.0%
!!! TGTCAAACATAATTTGCTAT+TGG - Chr2:49542053-49542072 MsG0280009289.01.T01:intron 25.0%
!!! TTTCAAGTTGATTTGATCTT+AGG - Chr2:49542128-49542147 MsG0280009289.01.T01:CDS 25.0%
AAAAACCTTCACAACCTTAA+GGG - Chr2:49542430-49542449 MsG0280009289.01.T01:intron 30.0%
AAAAGAACTGTGGGTTTAAA+AGG - Chr2:49544154-49544173 MsG0280009289.01.T01:intron 30.0%
AAAATTCAACGACATATTGG+AGG - Chr2:49545941-49545960 MsG0280009289.01.T01:intron 30.0%
AAACATTATAGTGCCTATGA+TGG + Chr2:49545484-49545503 None:intergenic 30.0%
AAAGAACTGTGGGTTTAAAA+GGG - Chr2:49544155-49544174 MsG0280009289.01.T01:intron 30.0%
AAATATCCGTGTGATTTGAT+TGG - Chr2:49541887-49541906 MsG0280009289.01.T01:intron 30.0%
AACAGATGAAAACTATTGGA+TGG - Chr2:49545090-49545109 MsG0280009289.01.T01:CDS 30.0%
AAGTTTAAGCTTCAGATGTA+AGG + Chr2:49544203-49544222 None:intergenic 30.0%
AATAGATGCTTTCGATGTTT+CGG + Chr2:49546159-49546178 None:intergenic 30.0%
ACAAGGTTGTTAATACATAG+AGG + Chr2:49545972-49545991 None:intergenic 30.0%
ATTGATGTTATGGGAAAGTA+CGG - Chr2:49542784-49542803 MsG0280009289.01.T01:intron 30.0%
CAAGGTTGTTAATACATAGA+GGG + Chr2:49545971-49545990 None:intergenic 30.0%
CGAAAAATTCAACGACATAT+TGG - Chr2:49545938-49545957 MsG0280009289.01.T01:intron 30.0%
CTAACTTGAGATATAGGAAT+TGG + Chr2:49541759-49541778 None:intergenic 30.0%
GACCAACACAAAAAACATAT+AGG + Chr2:49542616-49542635 None:intergenic 30.0%
GATCTTGGTGAAAATAGTAA+CGG - Chr2:49542940-49542959 MsG0280009289.01.T01:intron 30.0%
GTTAAACTCTACAAATTTCC+AGG - Chr2:49541265-49541284 MsG0280009289.01.T01:CDS 30.0%
TCAGAAAAAGATGGAAGAAA+TGG - Chr2:49545617-49545636 MsG0280009289.01.T01:intron 30.0%
TGAAAGTTAGCTGAATTGAT+TGG - Chr2:49541673-49541692 MsG0280009289.01.T01:intron 30.0%
TGTAAACACAGTTAATACCT+TGG + Chr2:49544815-49544834 None:intergenic 30.0%
TTCAAACACAAGGAATTACA+AGG + Chr2:49546032-49546051 None:intergenic 30.0%
TTCATTGAGGACTTCAAAAA+TGG + Chr2:49546440-49546459 None:intergenic 30.0%
TTCCTTTAGTGAGGAAAATT+TGG - Chr2:49543005-49543024 MsG0280009289.01.T01:intron 30.0%
TTGAAACATTTCAGTTCTTG+TGG - Chr2:49543873-49543892 MsG0280009289.01.T01:intron 30.0%
TTGATCTTAGGATTGATTGA+TGG - Chr2:49542140-49542159 MsG0280009289.01.T01:CDS 30.0%
TTGGCTGTTATTGATGTTAT+GGG - Chr2:49542775-49542794 MsG0280009289.01.T01:intron 30.0%
! AACATCTAAGACAAAAATGC+AGG - Chr2:49543149-49543168 MsG0280009289.01.T01:intron 30.0%
! ATCCAAATTTTCCTCACTAA+AGG + Chr2:49543010-49543029 None:intergenic 30.0%
! TAATTCCTTGTGTTTGAAAC+AGG - Chr2:49546034-49546053 MsG0280009289.01.T01:intron 30.0%
! TGACCATTTTGGATTTACAA+TGG - Chr2:49543441-49543460 MsG0280009289.01.T01:CDS 30.0%
! TTATTGAATTTTTCCTGCAG+TGG - Chr2:49543940-49543959 MsG0280009289.01.T01:CDS 30.0%
!! GTTCTTCTTTAAGTTGGTTT+GGG - Chr2:49544755-49544774 MsG0280009289.01.T01:CDS 30.0%
!! TTCTTTTCACTGAAGTGTTT+TGG - Chr2:49541721-49541740 MsG0280009289.01.T01:intron 30.0%
!! TTGAATTTTTCGGCCAAATT+TGG + Chr2:49545930-49545949 None:intergenic 30.0%
!! TTTCTCTGTTGCTATTTGAT+TGG - Chr2:49544526-49544545 MsG0280009289.01.T01:CDS 30.0%
!!! AGCCTATATGTTTTTTGTGT+TGG - Chr2:49542611-49542630 MsG0280009289.01.T01:intron 30.0%
AAAATCAAGAACACGATACC+TGG + Chr2:49541286-49541305 None:intergenic 35.0%
AAAGAAGAACCAGGAGTTAT+CGG + Chr2:49544745-49544764 None:intergenic 35.0%
AACAAGTGACAAGAAAGGTA+AGG - Chr2:49546304-49546323 MsG0280009289.01.T01:CDS 35.0%
AACCAACTTAAAGAAGAACC+AGG + Chr2:49544754-49544773 None:intergenic 35.0%
AAGAGGACAATAGTGTTAGT+GGG - Chr2:49542908-49542927 MsG0280009289.01.T01:intron 35.0%
AAGCAAGACAAGTGGAATTA+GGG + Chr2:49541225-49541244 None:intergenic 35.0%
AAGCTCATAAACACAGTTGA+TGG - Chr2:49542280-49542299 MsG0280009289.01.T01:intron 35.0%
AATGCAGGTTCAGAAAAAGA+TGG - Chr2:49545608-49545627 MsG0280009289.01.T01:intron 35.0%
ACCTTGTAAAAGTGACACTT+AGG + Chr2:49541847-49541866 None:intergenic 35.0%
AGATGAAAACTATTGGATGG+TGG - Chr2:49545093-49545112 MsG0280009289.01.T01:CDS 35.0%
AGGTCCGATTAATGAAAATG+AGG - Chr2:49541014-49541033 MsG0280009289.01.T01:CDS 35.0%
AGTTCGAGACAAATATAACG+AGG - Chr2:49542179-49542198 MsG0280009289.01.T01:CDS 35.0%
ATATTCCTACTCATACCTGT+GGG + Chr2:49545171-49545190 None:intergenic 35.0%
ATGATGTCGTGATGTATGAT+AGG - Chr2:49542545-49542564 MsG0280009289.01.T01:intron 35.0%
ATGCTAGGTATTCACCATTA+GGG + Chr2:49542363-49542382 None:intergenic 35.0%
ATGGAAGAAATGGATAATGC+TGG - Chr2:49545627-49545646 MsG0280009289.01.T01:intron 35.0%
ATTTGAGGAAAGACAATCAG+AGG + Chr2:49544394-49544413 None:intergenic 35.0%
CACAAGATAGATGCATACTA+AGG - Chr2:49545697-49545716 MsG0280009289.01.T01:intron 35.0%
CAGCCATTGTAAATCCAAAA+TGG + Chr2:49543447-49543466 None:intergenic 35.0%
CATAACATCAATAACAGCCA+AGG + Chr2:49542776-49542795 None:intergenic 35.0%
CTTGGCTGTTATTGATGTTA+TGG - Chr2:49542774-49542793 MsG0280009289.01.T01:intron 35.0%
GAAAAACCTTCACAACCTTA+AGG - Chr2:49542429-49542448 MsG0280009289.01.T01:intron 35.0%
GAATAATGAACCTGAAGACT+GGG + Chr2:49544969-49544988 None:intergenic 35.0%
GATATGTAGTTGCATGGAAT+AGG - Chr2:49543630-49543649 MsG0280009289.01.T01:intron 35.0%
GATGAAAACTATTGGATGGT+GGG - Chr2:49545094-49545113 MsG0280009289.01.T01:CDS 35.0%
GATGAAACAAGTGACAAGAA+AGG - Chr2:49546299-49546318 MsG0280009289.01.T01:CDS 35.0%
GGATAAGCAGATTCTGATAT+GGG - Chr2:49542669-49542688 MsG0280009289.01.T01:CDS 35.0%
GGTCCGATTAATGAAAATGA+GGG - Chr2:49541015-49541034 MsG0280009289.01.T01:CDS 35.0%
TAACAAAACAAGTCACCTTC+AGG + Chr2:49545038-49545057 None:intergenic 35.0%
TAACCATGAATGTTCTTTGC+TGG - Chr2:49542482-49542501 MsG0280009289.01.T01:intron 35.0%
TAGTGAGGAAAATTTGGATG+AGG - Chr2:49543011-49543030 MsG0280009289.01.T01:intron 35.0%
TATCTTCGCATCTTTACTGA+AGG - Chr2:49544041-49544060 MsG0280009289.01.T01:CDS 35.0%
TCAAATCACACGGATATTTG+TGG + Chr2:49541886-49541905 None:intergenic 35.0%
TCACACACAAAGGAGAAAAT+GGG + Chr2:49545219-49545238 None:intergenic 35.0%
TCACTGGAGAAATCAATGAA+AGG - Chr2:49545873-49545892 MsG0280009289.01.T01:intron 35.0%
TCCTTTCTTGTTAAATGCCA+GGG + Chr2:49542224-49542243 None:intergenic 35.0%
TGAACAAACCTGATCATTTG+AGG + Chr2:49544409-49544428 None:intergenic 35.0%
TGAACAGATATGTAGTTGCA+TGG - Chr2:49543624-49543643 MsG0280009289.01.T01:intron 35.0%
TGAGGACTTCAAAAATGGAT+TGG + Chr2:49546435-49546454 None:intergenic 35.0%
TGATGTCGTGATGTATGATA+GGG - Chr2:49542546-49542565 MsG0280009289.01.T01:intron 35.0%
TGGAATTGATCTGTTTCCAA+AGG - Chr2:49543047-49543066 MsG0280009289.01.T01:intron 35.0%
TGGATAAGCAGATTCTGATA+TGG - Chr2:49542668-49542687 MsG0280009289.01.T01:CDS 35.0%
TTACTTCCGTTAACAATTGC+AGG + Chr2:49546266-49546285 None:intergenic 35.0%
TTCCTTTCTTGTTAAATGCC+AGG + Chr2:49542225-49542244 None:intergenic 35.0%
TTGTCTTTCCTCAAATGATC+AGG - Chr2:49544398-49544417 MsG0280009289.01.T01:CDS 35.0%
! AAAATTGGATAATGGCAGTG+TGG - Chr2:49543107-49543126 MsG0280009289.01.T01:CDS 35.0%
! AAATTGGATAATGGCAGTGT+GGG - Chr2:49543108-49543127 MsG0280009289.01.T01:CDS 35.0%
! ACAGTTCTTTTACAACACCT+AGG + Chr2:49544145-49544164 None:intergenic 35.0%
! ACTTGTCAAACTTTTGTCAC+TGG - Chr2:49545857-49545876 MsG0280009289.01.T01:intron 35.0%
! AGAAATGGATAATGCTGGTT+TGG - Chr2:49545632-49545651 MsG0280009289.01.T01:intron 35.0%
! AGGTAGAGTATCTGATGTAA+TGG + Chr2:49546123-49546142 None:intergenic 35.0%
! AGGTGTTGTAAAAGAACTGT+GGG - Chr2:49544145-49544164 MsG0280009289.01.T01:intron 35.0%
! AGTTCTTTTACAACACCTAG+GGG + Chr2:49544143-49544162 None:intergenic 35.0%
! ATCTAAGACAAAAATGCAGG+AGG - Chr2:49543152-49543171 MsG0280009289.01.T01:intron 35.0%
! CAGTTCTTTTACAACACCTA+GGG + Chr2:49544144-49544163 None:intergenic 35.0%
! CCAATTTTTCTTTGACTGAC+CGG + Chr2:49543095-49543114 None:intergenic 35.0%
! CCTCCCTCATTTTCATTAAT+CGG + Chr2:49541021-49541040 None:intergenic 35.0%
! CTTTGAAAGCGAAGAAGTAA+AGG - Chr2:49543971-49543990 MsG0280009289.01.T01:CDS 35.0%
! GGTAGAGTATCTGATGTAAT+GGG + Chr2:49546122-49546141 None:intergenic 35.0%
! TAGGTGTTGTAAAAGAACTG+TGG - Chr2:49544144-49544163 MsG0280009289.01.T01:intron 35.0%
! TATGGGAAAGTACGGTATAT+GGG - Chr2:49542792-49542811 MsG0280009289.01.T01:intron 35.0%
! TGATGACGATGCTTTCAATT+TGG - Chr2:49545668-49545687 MsG0280009289.01.T01:intron 35.0%
! TTATGGGAAAGTACGGTATA+TGG - Chr2:49542791-49542810 MsG0280009289.01.T01:intron 35.0%
!! ACGACATCATTTTTCAATCC+GGG + Chr2:49542535-49542554 None:intergenic 35.0%
!! ATCATTTTTCAATCCGGGAA+TGG + Chr2:49542530-49542549 None:intergenic 35.0%
!! CACGACATCATTTTTCAATC+CGG + Chr2:49542536-49542555 None:intergenic 35.0%
!! CAGATTGATTTTCATGACAC+TGG - Chr2:49543391-49543410 MsG0280009289.01.T01:intron 35.0%
!! GACTTCAAAAATGGATTGGA+CGG + Chr2:49546431-49546450 None:intergenic 35.0%
!! GGTTCTTCTTTAAGTTGGTT+TGG - Chr2:49544754-49544773 MsG0280009289.01.T01:CDS 35.0%
!! TGCTCTGAAACTTCCAAATT+TGG - Chr2:49545914-49545933 MsG0280009289.01.T01:intron 35.0%
!!! ACCTAAGTGTCACTTTTACA+AGG - Chr2:49541843-49541862 MsG0280009289.01.T01:intron 35.0%
!!! GATGTTTTAGTCACACACAA+AGG + Chr2:49545229-49545248 None:intergenic 35.0%
AAAAGATCTAACCCAGTGTC+AGG + Chr2:49542463-49542482 None:intergenic 40.0%
AACTCTAACACCTGCATGTT+TGG + Chr2:49544673-49544692 None:intergenic 40.0%
AACTGGAACCGTTATCATCT+GGG - Chr2:49542393-49542412 MsG0280009289.01.T01:intron 40.0%
AAGAGGGTTATGAATCGAGA+CGG + Chr2:49541137-49541156 None:intergenic 40.0%
AAGTGACAAGAAAGGTAAGG+AGG - Chr2:49546307-49546326 MsG0280009289.01.T01:CDS 40.0%
AATCGGTACAGAAGTTATCG+TGG - Chr2:49542085-49542104 MsG0280009289.01.T01:CDS 40.0%
AATCTGCTTATCCAAACCAG+AGG + Chr2:49542662-49542681 None:intergenic 40.0%
AATTCCACTTGTCTTGCTTC+TGG - Chr2:49541226-49541245 MsG0280009289.01.T01:CDS 40.0%
ACACCTTTCTGATCCATCAT+AGG - Chr2:49545468-49545487 MsG0280009289.01.T01:intron 40.0%
ACTAAATGGGCGATACATGA+GGG + Chr2:49543530-49543549 None:intergenic 40.0%
ACTATGCTTCTTATGCCTGA+AGG - Chr2:49545020-49545039 MsG0280009289.01.T01:CDS 40.0%
ACTCCAGCAAAGAACATTCA+TGG + Chr2:49542488-49542507 None:intergenic 40.0%
AGACATGTAATTTCGCTCGA+TGG - Chr2:49544315-49544334 MsG0280009289.01.T01:CDS 40.0%
AGGTTGAGTCTCACAAGAAA+AGG - Chr2:49543067-49543086 MsG0280009289.01.T01:CDS 40.0%
AGGTTGCAATAAAGGAAGAG+AGG + Chr2:49545766-49545785 None:intergenic 40.0%
AGTCTCACAAGAAAAGGAAC+CGG - Chr2:49543073-49543092 MsG0280009289.01.T01:CDS 40.0%
ATGAATCGAGACGGATACAT+CGG + Chr2:49541128-49541147 None:intergenic 40.0%
ATGCCTCCAATCAAATCACA+CGG + Chr2:49541896-49541915 None:intergenic 40.0%
ATGGCTGCATTGAATGAGAA+TGG - Chr2:49543460-49543479 MsG0280009289.01.T01:CDS 40.0%
ATTGTGTTCGTACGATTCCA+AGG - Chr2:49544795-49544814 MsG0280009289.01.T01:CDS 40.0%
CAGTTGAATCAAGAGATGCT+AGG + Chr2:49542378-49542397 None:intergenic 40.0%
CATATTCCTACTCATACCTG+TGG + Chr2:49545172-49545191 None:intergenic 40.0%
CCAAAATGGTCAGTCATTGA+TGG + Chr2:49543433-49543452 None:intergenic 40.0%
CCGATTAATGAAAATGAGGG+AGG - Chr2:49541018-49541037 MsG0280009289.01.T01:CDS 40.0%
CCGGTCAGTCAAAGAAAAAT+TGG - Chr2:49543092-49543111 MsG0280009289.01.T01:CDS 40.0%
CCTTTCCTGTTTCAAACACA+AGG + Chr2:49546042-49546061 None:intergenic 40.0%
CGAATAATGAACCTGAAGAC+TGG + Chr2:49544970-49544989 None:intergenic 40.0%
CGATGGATACTCTCATATTG+AGG - Chr2:49543263-49543282 MsG0280009289.01.T01:intron 40.0%
CTAGCATCTCTTGATTCAAC+TGG - Chr2:49542376-49542395 MsG0280009289.01.T01:CDS 40.0%
GAAGACCGAGAAAAATTCTG+TGG + Chr2:49541704-49541723 None:intergenic 40.0%
GAAGAGGACAATAGTGTTAG+TGG - Chr2:49542907-49542926 MsG0280009289.01.T01:intron 40.0%
GAAGCAAGACAAGTGGAATT+AGG + Chr2:49541226-49541245 None:intergenic 40.0%
GAAGTAAAGGTTGTTGCACT+TGG - Chr2:49543984-49544003 MsG0280009289.01.T01:CDS 40.0%
GACATGTAATTTCGCTCGAT+GGG - Chr2:49544316-49544335 MsG0280009289.01.T01:CDS 40.0%
GAGAAGTTGTTCACTCTTAG+AGG - Chr2:49542577-49542596 MsG0280009289.01.T01:intron 40.0%
GAGGAAAATTTGGATGAGGA+TGG - Chr2:49543015-49543034 MsG0280009289.01.T01:intron 40.0%
GATGAGGATGGAGAAGAATA+TGG - Chr2:49543027-49543046 MsG0280009289.01.T01:intron 40.0%
GATGCTAGGTATTCACCATT+AGG + Chr2:49542364-49542383 None:intergenic 40.0%
GCAGAAAAGTTTAACACCCT+CGG - Chr2:49541918-49541937 MsG0280009289.01.T01:intron 40.0%
GCTATTGGACAAAGCCTAAT+CGG - Chr2:49542068-49542087 MsG0280009289.01.T01:intron 40.0%
GTAAAGTCGACAAATAAGCC+TGG - Chr2:49546365-49546384 MsG0280009289.01.T01:CDS 40.0%
GTAGCCATGTACTTTCCATT+GGG + Chr2:49542640-49542659 None:intergenic 40.0%
GTCACACACAAAGGAGAAAA+TGG + Chr2:49545220-49545239 None:intergenic 40.0%
GTCTTTGCAAATCCTTGCAA+GGG - Chr2:49543487-49543506 MsG0280009289.01.T01:CDS 40.0%
GTTAACGGAAGTAAGAAGTC+AGG - Chr2:49546272-49546291 MsG0280009289.01.T01:CDS 40.0%
GTTGGAGACTTCATAGATGA+AGG + Chr2:49542829-49542848 None:intergenic 40.0%
TAACCTTTCTGTACCGTACA+AGG + Chr2:49545989-49546008 None:intergenic 40.0%
TAAGCCTGGAGTTGACAAAT+CGG - Chr2:49546379-49546398 MsG0280009289.01.T01:CDS 40.0%
TACTAAATGGGCGATACATG+AGG + Chr2:49543531-49543550 None:intergenic 40.0%
TACTAGCCCAGCTACTAAAT+GGG + Chr2:49543543-49543562 None:intergenic 40.0%
TATCCGTGTGATTTGATTGG+AGG - Chr2:49541890-49541909 MsG0280009289.01.T01:intron 40.0%
TCCCTGGCATTTAACAAGAA+AGG - Chr2:49542220-49542239 MsG0280009289.01.T01:intron 40.0%
TCTTTGCAAATCCTTGCAAG+GGG - Chr2:49543488-49543507 MsG0280009289.01.T01:CDS 40.0%
TGGAATCGTACGAACACAAT+TGG + Chr2:49544795-49544814 None:intergenic 40.0%
TTAAATGCCAGGGAACGTAT+TGG + Chr2:49542214-49542233 None:intergenic 40.0%
TTACTAGCCCAGCTACTAAA+TGG + Chr2:49543544-49543563 None:intergenic 40.0%
TTCTTGTGAGACTCAACCTT+TGG + Chr2:49543066-49543085 None:intergenic 40.0%
TTTGTTTGATGAGGAGGAAG+AGG - Chr2:49542891-49542910 MsG0280009289.01.T01:intron 40.0%
! AATCTTTTCCTGCTAGTTGG+TGG + Chr2:49542976-49542995 None:intergenic 40.0%
! ACCATTCGATCTGAGATGAA+CGG - Chr2:49543754-49543773 MsG0280009289.01.T01:intron 40.0%
! AGAACTGTTTTCCTTGAGGT+TGG + Chr2:49546096-49546115 None:intergenic 40.0%
! ATGGGATGTTGATAAGAAGC+AGG - Chr2:49542687-49542706 MsG0280009289.01.T01:CDS 40.0%
! CCATCAATGACTGACCATTT+TGG - Chr2:49543430-49543449 MsG0280009289.01.T01:CDS 40.0%
! CCTTGTGTTTGAAACAGGAA+AGG - Chr2:49546039-49546058 MsG0280009289.01.T01:intron 40.0%
! CTCCTGGTTCTTCTTTAAGT+TGG - Chr2:49544749-49544768 MsG0280009289.01.T01:CDS 40.0%
! GTTTTTACAGCAGCAAAACC+TGG - Chr2:49543809-49543828 MsG0280009289.01.T01:intron 40.0%
! TAGGATTGATTGATGGCACT+TGG - Chr2:49542147-49542166 MsG0280009289.01.T01:CDS 40.0%
! TCAGGTTTGTTCAGTCTTCA+TGG - Chr2:49544416-49544435 MsG0280009289.01.T01:CDS 40.0%
! TGGTTTGGGTTTAGTGAAGA+GGG - Chr2:49544769-49544788 MsG0280009289.01.T01:CDS 40.0%
! TGTGGGATTTAGAAGCACAA+TGG - Chr2:49543125-49543144 MsG0280009289.01.T01:CDS 40.0%
! TTGCTATTCACTTACCCATC+AGG - Chr2:49545251-49545270 MsG0280009289.01.T01:CDS 40.0%
!! CGATAACTTCTGTACCGATT+AGG + Chr2:49542085-49542104 None:intergenic 40.0%
!! CTTATTTGTCGACTTTACCG+AGG + Chr2:49546363-49546382 None:intergenic 40.0%
!! GCTTCTTTTGTTTGATGAGG+AGG - Chr2:49542885-49542904 MsG0280009289.01.T01:intron 40.0%
!! TGGGCTTCTTTTGTTTGATG+AGG - Chr2:49542882-49542901 MsG0280009289.01.T01:intron 40.0%
!! TTGGTTTGGGTTTAGTGAAG+AGG - Chr2:49544768-49544787 MsG0280009289.01.T01:CDS 40.0%
!! TTTTTGTGTTGGTCACCCAA+TGG - Chr2:49542622-49542641 MsG0280009289.01.T01:intron 40.0%
!!! GCGTGGTTTTATTACTGCAT+AGG - Chr2:49544469-49544488 MsG0280009289.01.T01:CDS 40.0%
AACCGAGGATATACCTATGC+TGG - Chr2:49542846-49542865 MsG0280009289.01.T01:intron 45.0%
AACGATGGTGCAGACAAGTT+TGG + Chr2:49546194-49546213 None:intergenic 45.0%
AACGGAAGTAAGAAGTCAGG+AGG - Chr2:49546275-49546294 MsG0280009289.01.T01:CDS 45.0%
AAGGTGTGAAACAGGACTTG+TGG + Chr2:49545455-49545474 None:intergenic 45.0%
ACACAAGAGGCAGCTAAAGA+TGG - Chr2:49546230-49546249 MsG0280009289.01.T01:CDS 45.0%
ACCGAGGATATACCTATGCT+GGG - Chr2:49542847-49542866 MsG0280009289.01.T01:intron 45.0%
AGATCCAGAAGCAAGACAAG+TGG + Chr2:49541233-49541252 None:intergenic 45.0%
AGCATAGGTATATCCTCGGT+TGG + Chr2:49542847-49542866 None:intergenic 45.0%
AGCTTTACACTGTCAGTGCA+TGG + Chr2:49541796-49541815 None:intergenic 45.0%
ATAACCACTGTCGATCACGA+TGG - Chr2:49543246-49543265 MsG0280009289.01.T01:intron 45.0%
ATACCTATGCTGGGCAAGAA+CGG - Chr2:49542856-49542875 MsG0280009289.01.T01:intron 45.0%
ATCTATGAAGTCTCCAACCG+AGG - Chr2:49542831-49542850 MsG0280009289.01.T01:intron 45.0%
ATCTGCCATCCAACTGTGAT+CGG + Chr2:49543700-49543719 None:intergenic 45.0%
CAACCTTGTACGGTACAGAA+AGG - Chr2:49545983-49546002 MsG0280009289.01.T01:intron 45.0%
CAACTGGAACCGTTATCATC+TGG - Chr2:49542392-49542411 MsG0280009289.01.T01:intron 45.0%
CGTCTTTGCAAATCCTTGCA+AGG - Chr2:49543486-49543505 MsG0280009289.01.T01:CDS 45.0%
CTATGCCCTTAAGGTTGTGA+AGG + Chr2:49542438-49542457 None:intergenic 45.0%
CTATTCACTTACCCATCAGG+TGG - Chr2:49545254-49545273 MsG0280009289.01.T01:CDS 45.0%
CTTCGCATCTTTACTGAAGG+TGG - Chr2:49544044-49544063 MsG0280009289.01.T01:CDS 45.0%
CTTTACTGAAGGTGGTATGC+AGG - Chr2:49544052-49544071 MsG0280009289.01.T01:CDS 45.0%
CTTTGCAAATCCTTGCAAGG+GGG - Chr2:49543489-49543508 MsG0280009289.01.T01:CDS 45.0%
GAACAGCATGCATCTCTTTG+AGG - Chr2:49545368-49545387 MsG0280009289.01.T01:intron 45.0%
GCGCAAACATTCCTTTAGTG+AGG - Chr2:49542996-49543015 MsG0280009289.01.T01:intron 45.0%
GGTAGCCATGTACTTTCCAT+TGG + Chr2:49542641-49542660 None:intergenic 45.0%
GTATCGCCCATTTAGTAGCT+GGG - Chr2:49543534-49543553 MsG0280009289.01.T01:intron 45.0%
GTCAGATTGTGCGCTTATAC+TGG - Chr2:49543571-49543590 MsG0280009289.01.T01:intron 45.0%
GTGGAGTTCCCAGATGATAA+CGG + Chr2:49542404-49542423 None:intergenic 45.0%
TACACTTCCAATACGTTCCC+TGG - Chr2:49542204-49542223 MsG0280009289.01.T01:intron 45.0%
TACTCTACCTAGCAGTAGCA+AGG - Chr2:49546133-49546152 MsG0280009289.01.T01:intron 45.0%
TCAGTCATTGATGGAACTCG+AGG + Chr2:49543424-49543443 None:intergenic 45.0%
TCGAAAGCTAAGCCAGTAAC+TGG + Chr2:49542340-49542359 None:intergenic 45.0%
TGACAAATCGGAGCCTAGTT+TGG - Chr2:49546391-49546410 MsG0280009289.01.T01:CDS 45.0%
TGTATCGCCCATTTAGTAGC+TGG - Chr2:49543533-49543552 MsG0280009289.01.T01:intron 45.0%
! AAAGAGTGTGTTGCATGGCA+TGG - Chr2:49542734-49542753 MsG0280009289.01.T01:CDS 45.0%
! ATTGATTGATGGCACTTGGC+AGG - Chr2:49542151-49542170 MsG0280009289.01.T01:CDS 45.0%
! CAAGTCAATTTGGTGGAAGC+TGG - Chr2:49544941-49544960 MsG0280009289.01.T01:CDS 45.0%
! CCACTTGCTACATCTGATCT+GGG - Chr2:49545315-49545334 MsG0280009289.01.T01:intron 45.0%
! CGATGAAAGAGTGTGTTGCA+TGG - Chr2:49542729-49542748 MsG0280009289.01.T01:CDS 45.0%
! CGCAATCTTTTCCTGCTAGT+TGG + Chr2:49542979-49542998 None:intergenic 45.0%
! GGATCAGAAAGGTGTGAAAC+AGG + Chr2:49545463-49545482 None:intergenic 45.0%
! GTCACCCAATGGAAAGTACA+TGG - Chr2:49542633-49542652 MsG0280009289.01.T01:intron 45.0%
! GTGCAGAACTGTTTTCCTTG+AGG + Chr2:49546100-49546119 None:intergenic 45.0%
! TCCACTTGCTACATCTGATC+TGG - Chr2:49545314-49545333 MsG0280009289.01.T01:intron 45.0%
! TGTGAAGGTTTTTCCCTGAG+TGG + Chr2:49542423-49542442 None:intergenic 45.0%
!! AATGGATTGGACGGTCTTGT+TGG + Chr2:49546422-49546441 None:intergenic 45.0%
!! AGTTGATGGCTCTATTGCGA+GGG - Chr2:49542294-49542313 MsG0280009289.01.T01:intron 45.0%
!! ATGCAGGAGGCATTTCAATC+AGG - Chr2:49543165-49543184 MsG0280009289.01.T01:intron 45.0%
!! CTTGTTGGTGTCACCAAACT+AGG + Chr2:49546407-49546426 None:intergenic 45.0%
!! GATTCCCTGCTTTTACAGCA+GGG - Chr2:49543652-49543671 MsG0280009289.01.T01:intron 45.0%
!! GTGCCTATGATGGATCAGAA+AGG + Chr2:49545474-49545493 None:intergenic 45.0%
!! TCTATTGCGAGGGTTCTGAA+GGG - Chr2:49542304-49542323 MsG0280009289.01.T01:CDS 45.0%
!! TGTTGCACTTGGTGCTTCTT+GGG - Chr2:49543995-49544014 MsG0280009289.01.T01:CDS 45.0%
!! TTGTTGCACTTGGTGCTTCT+TGG - Chr2:49543994-49544013 MsG0280009289.01.T01:CDS 45.0%
!!! CATAAGAAGCGCCTTTTTCC+AGG + Chr2:49543207-49543226 None:intergenic 45.0%
!!! ATTGAAATTTTAAATAAAAT+TGG - Chr2:49541330-49541349 MsG0280009289.01.T01:CDS 5.0%
!!! TTGAAATTTTAAATAAAATT+GGG - Chr2:49541331-49541350 MsG0280009289.01.T01:CDS 5.0%
AAAGCCTGAATCCTTCCCAC+AGG - Chr2:49545153-49545172 MsG0280009289.01.T01:CDS 50.0%
AGAATCTTGGGAGCGGAAGA+AGG + Chr2:49541163-49541182 None:intergenic 50.0%
AGCACCCTGCTGTAAAAGCA+GGG + Chr2:49543659-49543678 None:intergenic 50.0%
AGTGGGAGCTTGAGTGATCT+TGG - Chr2:49542925-49542944 MsG0280009289.01.T01:intron 50.0%
AGTTTGAGCCACCAACTAGC+AGG - Chr2:49542965-49542984 MsG0280009289.01.T01:intron 50.0%
ATCATCTGGGAACTCCACTC+AGG - Chr2:49542406-49542425 MsG0280009289.01.T01:intron 50.0%
ATGCTGGGCAAGAACGGTAA+TGG - Chr2:49542862-49542881 MsG0280009289.01.T01:intron 50.0%
ATGTTCTTCTCCCCCTTGCA+AGG + Chr2:49543502-49543521 None:intergenic 50.0%
CAACACCTAGGGGATACTTC+TGG + Chr2:49544133-49544152 None:intergenic 50.0%
CAGTTGTGCAACTACAGACC+AGG + Chr2:49543830-49543849 None:intergenic 50.0%
CATACCTGTGGGAAGGATTC+AGG + Chr2:49545160-49545179 None:intergenic 50.0%
CCAAAGCAGTAACACCGTCA+CGG + Chr2:49541195-49541214 None:intergenic 50.0%
CCCAGATCAGATGTAGCAAG+TGG + Chr2:49545318-49545337 None:intergenic 50.0%
GAAAGGTAAGGAGGCAATGC+AGG - Chr2:49546316-49546335 MsG0280009289.01.T01:CDS 50.0%
GAATCTGTTGCCTCTGACAC+TGG - Chr2:49544438-49544457 MsG0280009289.01.T01:CDS 50.0%
GACTACGGATACCAACCTCA+AGG - Chr2:49546082-49546101 MsG0280009289.01.T01:intron 50.0%
GACTTTACCGAGGAACCAAG+TGG + Chr2:49546353-49546372 None:intergenic 50.0%
GAGCGGAAGAAGGAAGAAGA+GGG + Chr2:49541153-49541172 None:intergenic 50.0%
GCCCAGCATAGGTATATCCT+CGG + Chr2:49542851-49542870 None:intergenic 50.0%
GCCGTTCATCTCAGATCGAA+TGG + Chr2:49543758-49543777 None:intergenic 50.0%
GCTGAATATGCCAGTGTCAG+AGG + Chr2:49544451-49544470 None:intergenic 50.0%
GGTGACTGCATCAGGTTTCA+AGG - Chr2:49544344-49544363 MsG0280009289.01.T01:CDS 50.0%
GTACATGGCTACCTCTGGTT+TGG - Chr2:49542648-49542667 MsG0280009289.01.T01:intron 50.0%
GTATCCATCGTGATCGACAG+TGG + Chr2:49543253-49543272 None:intergenic 50.0%
GTTCTTTGCTGGAGTCCTGA+TGG - Chr2:49542493-49542512 MsG0280009289.01.T01:intron 50.0%
TCATCTGGGAACTCCACTCA+GGG - Chr2:49542407-49542426 MsG0280009289.01.T01:intron 50.0%
TCCTACTCATACCTGTGGGA+AGG + Chr2:49545167-49545186 None:intergenic 50.0%
TCCTCATCCACTTGGTTCCT+CGG - Chr2:49546343-49546362 MsG0280009289.01.T01:CDS 50.0%
TCCTTCCCACAGGTATGAGT+AGG - Chr2:49545163-49545182 MsG0280009289.01.T01:CDS 50.0%
TGACACTGGCATATTCAGCG+TGG - Chr2:49544452-49544471 MsG0280009289.01.T01:CDS 50.0%
TGCATGGCATGGAAGCCAAT+CGG - Chr2:49542745-49542764 MsG0280009289.01.T01:CDS 50.0%
TGCTGGGCAAGAACGGTAAT+GGG - Chr2:49542863-49542882 MsG0280009289.01.T01:intron 50.0%
TGGTTTAGGCACCACCTGAT+GGG + Chr2:49545268-49545287 None:intergenic 50.0%
TGTCAGGAGCTATGCCCTTA+AGG + Chr2:49542447-49542466 None:intergenic 50.0%
TTACCGTTCTTGCCCAGCAT+AGG + Chr2:49542862-49542881 None:intergenic 50.0%
TTCCTTCTGCTCGCTCGTAT+GGG - Chr2:49541066-49541085 MsG0280009289.01.T01:CDS 50.0%
TTGGTTTAGGCACCACCTGA+TGG + Chr2:49545269-49545288 None:intergenic 50.0%
TTTCAATCCGGGAATGGCCA+AGG + Chr2:49542524-49542543 None:intergenic 50.0%
! CTCTATTGCGAGGGTTCTGA+AGG - Chr2:49542303-49542322 MsG0280009289.01.T01:CDS 50.0%
! GGAAAGTACATGGCTACCTC+TGG - Chr2:49542643-49542662 MsG0280009289.01.T01:intron 50.0%
! GGCTTAGCTTTCGACCCTAA+TGG - Chr2:49542346-49542365 MsG0280009289.01.T01:CDS 50.0%
!! CAGTTGATGGCTCTATTGCG+AGG - Chr2:49542293-49542312 MsG0280009289.01.T01:intron 50.0%
!! CTATTGCGAGGGTTCTGAAG+GGG - Chr2:49542305-49542324 MsG0280009289.01.T01:CDS 50.0%
!! GAATGCCAGAAGTATCCCCT+AGG - Chr2:49544125-49544144 MsG0280009289.01.T01:intron 50.0%
!! GGATTCCCTGCTTTTACAGC+AGG - Chr2:49543651-49543670 MsG0280009289.01.T01:intron 50.0%
!! TAGCTGGGCTAGTAATAGCG+AGG - Chr2:49543549-49543568 MsG0280009289.01.T01:intron 50.0%
AAACCTGATGCAGTCACCGC+TGG + Chr2:49544342-49544361 None:intergenic 55.0%
AAGCAGTAACACCGTCACGG+TGG + Chr2:49541192-49541211 None:intergenic 55.0%
AATTTCGCTCGATGGGCCAG+CGG - Chr2:49544323-49544342 MsG0280009289.01.T01:CDS 55.0%
ACCGAGGAACCAAGTGGATG+AGG + Chr2:49546347-49546366 None:intergenic 55.0%
AGGGCATAGCTCCTGACACT+GGG - Chr2:49542449-49542468 MsG0280009289.01.T01:intron 55.0%
ATCCCATACGAGCGAGCAGA+AGG + Chr2:49541071-49541090 None:intergenic 55.0%
ATGGCCAAGGTCTCACCATC+AGG + Chr2:49542511-49542530 None:intergenic 55.0%
ATTCTCCGTCACCACCGTGA+CGG - Chr2:49541178-49541197 MsG0280009289.01.T01:CDS 55.0%
CAAAGCGCATAGACCACTGC+AGG + Chr2:49543956-49543975 None:intergenic 55.0%
CAGCACCCTGCTGTAAAAGC+AGG + Chr2:49543660-49543679 None:intergenic 55.0%
CGAGACGGATACATCGGAAG+AGG + Chr2:49541122-49541141 None:intergenic 55.0%
CTCCAGTGCAGCCTGGAAAA+AGG - Chr2:49543193-49543212 MsG0280009289.01.T01:intron 55.0%
CTTCCTTCTGCTCGCTCGTA+TGG - Chr2:49541065-49541084 MsG0280009289.01.T01:CDS 55.0%
GACGGATACATCGGAAGAGG+AGG + Chr2:49541119-49541138 None:intergenic 55.0%
GAGGAACCAAGTGGATGAGG+AGG + Chr2:49546344-49546363 None:intergenic 55.0%
GATAGCCGTCCGATCACAGT+TGG - Chr2:49543688-49543707 MsG0280009289.01.T01:intron 55.0%
GCATGGCATGGAAGCCAATC+GGG - Chr2:49542746-49542765 MsG0280009289.01.T01:CDS 55.0%
GCCATCCAACTGTGATCGGA+CGG + Chr2:49543696-49543715 None:intergenic 55.0%
GGAGCGGAAGAAGGAAGAAG+AGG + Chr2:49541154-49541173 None:intergenic 55.0%
GGATACATCGGAAGAGGAGG+CGG + Chr2:49541116-49541135 None:intergenic 55.0%
GTTTCGGCCTTGCTACTGCT+AGG + Chr2:49546143-49546162 None:intergenic 55.0%
TAACACCGTCACGGTGGTGA+CGG + Chr2:49541186-49541205 None:intergenic 55.0%
TATCGGCAAGCGACCTCGAA+GGG + Chr2:49544728-49544747 None:intergenic 55.0%
TTATCGGCAAGCGACCTCGA+AGG + Chr2:49544729-49544748 None:intergenic 55.0%
! AAGGGCATAGCTCCTGACAC+TGG - Chr2:49542448-49542467 MsG0280009289.01.T01:intron 55.0%
! GAAGCTGGTTCCCAGTCTTC+AGG - Chr2:49544956-49544975 MsG0280009289.01.T01:CDS 55.0%
! GAGTCCTGATGGTGAGACCT+TGG - Chr2:49542504-49542523 MsG0280009289.01.T01:CDS 55.0%
! GATTGATGGCACTTGGCAGG+TGG - Chr2:49542154-49542173 MsG0280009289.01.T01:CDS 55.0%
! GGAAGCATGTTAGCAGCTGC+AGG - Chr2:49542241-49542260 MsG0280009289.01.T01:intron 55.0%
! GGCTCCGATTTGTCAACTCC+AGG + Chr2:49546386-49546405 None:intergenic 55.0%
! GTGACGGAGAATCTTGGGAG+CGG + Chr2:49541170-49541189 None:intergenic 55.0%
!! ACGGTGGTGACGGAGAATCT+TGG + Chr2:49541176-49541195 None:intergenic 55.0%
!! CCGTGACGGTGTTACTGCTT+TGG - Chr2:49541192-49541211 MsG0280009289.01.T01:CDS 55.0%
!! CGGTGGTGACGGAGAATCTT+GGG + Chr2:49541175-49541194 None:intergenic 55.0%
!! TGCACTTGGTGCTTCTTGGG+TGG - Chr2:49543998-49544017 MsG0280009289.01.T01:CDS 55.0%
AGGGAGGCCCACACCCAAAA+AGG - Chr2:49541034-49541053 MsG0280009289.01.T01:CDS 60.0%
ATCGGCAAGCGACCTCGAAG+GGG + Chr2:49544727-49544746 None:intergenic 60.0%
CAAGCGACCTCGAAGGGGTT+GGG + Chr2:49544722-49544741 None:intergenic 60.0%
CAGGCTCCTCCTCATCCACT+TGG - Chr2:49546335-49546354 MsG0280009289.01.T01:CDS 60.0%
CGAGCGAGCAGAAGGAAGCA+CGG + Chr2:49541063-49541082 None:intergenic 60.0%
GAAGCCAATCGGGAACGCCT+TGG - Chr2:49542756-49542775 MsG0280009289.01.T01:CDS 60.0%
GAGGCCCACACCCAAAAAGG+CGG - Chr2:49541037-49541056 MsG0280009289.01.T01:CDS 60.0%
GCAGCTGCAGGTGACGATGA+AGG - Chr2:49542253-49542272 MsG0280009289.01.T01:intron 60.0%
GCCGTCCGATCACAGTTGGA+TGG - Chr2:49543692-49543711 MsG0280009289.01.T01:intron 60.0%
GGAGGCGGTGACGAGATGTT+CGG + Chr2:49541101-49541120 None:intergenic 60.0%
GGATCAACTCCAGTGCAGCC+TGG - Chr2:49543186-49543205 MsG0280009289.01.T01:intron 60.0%
GGGCACAGAGGACCAGTTAC+TGG - Chr2:49542325-49542344 MsG0280009289.01.T01:CDS 60.0%
GGTCGCTTGCCGATAACTCC+TGG - Chr2:49544733-49544752 MsG0280009289.01.T01:CDS 60.0%
GGTGAGACCTTGGCCATTCC+CGG - Chr2:49542514-49542533 MsG0280009289.01.T01:CDS 60.0%
! ACAGCCAAGGCGTTCCCGAT+TGG + Chr2:49542763-49542782 None:intergenic 60.0%
! CGCCTTTTTCCAGGCTGCAC+TGG + Chr2:49543198-49543217 None:intergenic 60.0%
!! AGGAAGCACGGCCGCCTTTT+TGG + Chr2:49541051-49541070 None:intergenic 60.0%
!! AGGGTTCTGAAGGGGCACAG+AGG - Chr2:49542313-49542332 MsG0280009289.01.T01:CDS 60.0%
!! GGAAGCACGGCCGCCTTTTT+GGG + Chr2:49541050-49541069 None:intergenic 60.0%
!!! ACGGCCGCCTTTTTGGGTGT+GGG + Chr2:49541044-49541063 None:intergenic 60.0%
GCAAGCGACCTCGAAGGGGT+TGG + Chr2:49544723-49544742 None:intergenic 65.0%
!!! CACGGCCGCCTTTTTGGGTG+TGG + Chr2:49541045-49541064 None:intergenic 65.0%
CAGGGGACCCAACCCCTTCG+AGG - Chr2:49544712-49544731 MsG0280009289.01.T01:CDS 70.0%
GGGCCAGCGGTGACTGCATC+AGG - Chr2:49544336-49544355 MsG0280009289.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 49541010 49546463 49541010 ID=MsG0280009289.01;Name=MsG0280009289.01
Chr2 mRNA 49541010 49546463 49541010 ID=MsG0280009289.01.T01;Parent=MsG0280009289.01;Name=MsG0280009289.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|12|0|953
Chr2 exon 49546187 49546463 49546187 ID=MsG0280009289.01.T01:exon:45181;Parent=MsG0280009289.01.T01
Chr2 exon 49544189 49545300 49544189 ID=MsG0280009289.01.T01:exon:45180;Parent=MsG0280009289.01.T01
Chr2 exon 49543903 49544079 49543903 ID=MsG0280009289.01.T01:exon:45179;Parent=MsG0280009289.01.T01
Chr2 exon 49543400 49543513 49543400 ID=MsG0280009289.01.T01:exon:45178;Parent=MsG0280009289.01.T01
Chr2 exon 49543054 49543158 49543054 ID=MsG0280009289.01.T01:exon:45177;Parent=MsG0280009289.01.T01
Chr2 exon 49542657 49542791 49542657 ID=MsG0280009289.01.T01:exon:45176;Parent=MsG0280009289.01.T01
Chr2 exon 49542496 49542551 49542496 ID=MsG0280009289.01.T01:exon:45175;Parent=MsG0280009289.01.T01
Chr2 exon 49542299 49542401 49542299 ID=MsG0280009289.01.T01:exon:45174;Parent=MsG0280009289.01.T01
Chr2 exon 49542084 49542200 49542084 ID=MsG0280009289.01.T01:exon:45173;Parent=MsG0280009289.01.T01
Chr2 exon 49541732 49541858 49541732 ID=MsG0280009289.01.T01:exon:45172;Parent=MsG0280009289.01.T01
Chr2 exon 49541511 49541641 49541511 ID=MsG0280009289.01.T01:exon:45171;Parent=MsG0280009289.01.T01
Chr2 exon 49541010 49541417 49541010 ID=MsG0280009289.01.T01:exon:45170;Parent=MsG0280009289.01.T01
Chr2 CDS 49546187 49546463 49546187 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49544189 49545300 49544189 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49543903 49544079 49543903 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49543400 49543513 49543400 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49543054 49543158 49543054 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49542657 49542791 49542657 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49542496 49542551 49542496 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49542299 49542401 49542299 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49542084 49542200 49542084 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49541732 49541858 49541732 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49541511 49541641 49541511 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Chr2 CDS 49541010 49541417 49541010 ID=MsG0280009289.01.T01:cds;Parent=MsG0280009289.01.T01
Gene Sequence

>MsG0280009289.01.T01

ATGAAGGTCCGATTAATGAAAATGAGGGAGGCCCACACCCAAAAAGGCGGCCGTGCTTCCTTCTGCTCGCTCGTATGGGATCAGAAAGCCGAACATCTCGTCACCGCCTCCTCTTCCGATGTATCCGTCTCGATTCATAACCCTCTTCTTCCTTCTTCCGCTCCCAAGATTCTCCGTCACCACCGTGACGGTGTTACTGCTTTGGCTCTTAGCCCTAATTCCACTTGTCTTGCTTCTGGATCTGTCGATCACTCCGTTAAACTCTACAAATTTCCAGGTGGAGAGTTCGAGACAAATATAACGAGGTTTACACTTCCAATACGTTCCCTGGCATTTAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGACGATGAAGGCATCAAGCTCATAAACACAGTTGATGGCTCTATTGCGAGGGTTCTGAAGGGGCACAGAGGACCAGTTACTGGCTTAGCTTTCGACCCTAATGGTGAATACCTAGCATCTCTTGATTCAACTGGAACCGTTATCATCTGGGAACTCCACTCAGGGAAAAACCTTCACAACCTTAAGGGCATAGCTCCTGACACTGGGTTAGATCTTTTAACCATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTGGCCATTCCCGGATTGAAAAATGATGTCGTGATGTATGATAGGGACACTGCTGAGAAGTTGTTCACTCTTAGAGGAGATCATATTCAGCCTATATGTTTTTTGTGTTGGTCACCCAATGGAAAGTACATGGCTACCTCTGGTTTGGATAAGCAGATTCTGATATGGGATGTTGATAAGAAGCAGGATATTGACAGACAGAAATTCGATGAAAGAGTGTGTTGCATGGCATGGAAGCCAATCGGGAACGCCTTGGCTGTTATTGATGTTATGGGAAAGTACGGTATATGGGACAATGTTATTCCTTCATCTATGAAGTCTCCAACCGAGGATATACCTATGCTGGGCAAGAACGGTAATGGGCTTCTTTTGTTTGATGAGGAGGAAGAGGACAATAGTGTTAGTGGGAGCTTGAGTGATCTTGGTGAAAATAGTAACGGTGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAACATTCCTTTAGTGAGGAAAATTTGGATGAGGATGGAGAAGAATATGGAATTGATCTGTTTCCAAAGGTTGAGTCTCACAAGAAAAGGAACCGGTCAGTCAAAGAAAAATTGGATAATGGCAGTGTGGGATTTAGAAGCACAATGGTAACATCTAAGACAAAAATGCAGGAGGCATTTCAATCAGGATCAACTCCAGTGCAGCCTGGAAAAAGGCGCTTCTTATGCTATAATATGCTTGGAAGTATAACCACTGTCGATCACGATGGATACTCTCATATTGAGATTGATTTTCATGACACTGGAAGCAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTTACAATGGCTGCATTGAATGAGAATGGAAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAGTAATAGCGAGTGGTCTATGCGCTTTGAAAGCGAAGAAGTAAAGGTTGTTGCACTTGGTGCTTCTTGGGTGGCTGCAGTAACAAGTTTTAACTATCTTCGCATCTTTACTGAAGGTGGTATGCAGAGACATGTAATTTCGCTCGATGGGCCAGCGGTGACTGCATCAGGTTTCAAGGATAAGCTTGTAGTTGTTACTCATGCCTCTGATTGTCTTTCCTCAAATGATCAGGTGTTAGAGTTTAGTTTATTTAATATAGCACAGGGGACCCAACCCCTTCGAGGTCGCTTGCCGATAACTCCTGGTTCTTCTTTAAGTTGGTTTGGGTTTAGTGAAGAGGGCCAATTGTGTTCGTACGATTCCAAGGGTGTGCTAAGATTATATACAAGTCAATTTGGTGGAAGCTGGTTCCCAGTCTTCAGTGCTATTAAAGAGAAGAAAACAGATGAAAACTATTGGATGGTGGGTTTGAATACAAACAAGTTAGTTTGTGTAGTATTGAAAAAGCCTGAATCCTTCCCACAGGTGGTGCCTAAACCAATTCTCACTTTAATGAATCTTTCATTTCCACTTGCTACATCTGATCTGGGAGCTGAAGCCCTTGAAAATGAGTTTATGATGAACAGCATGCATCTCTTTGAGGTTCAGAAAAAGATGGAAGAAATGGATAATGCTGGTTTGGATGCTAGTTTACTTGATGACGATGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTAAGGCTAATAGCATCGTGCTGCAATAGTGATAAACTTGTGAGAGCTACTGAACTTGTCAAACTTTTGTCACTGGAGAAATCAATGAAAGGTGCAATAAAACTTGTTACTGCTCTGAAACTTCCAAATTTGGCCGAAAAATTCAACGACATATTGGAGGAAAGGCTATACAATGAAGTTAAAAAGACTACGGATACCAACCTCAAGGAAAACAGTTCTGCACCCATTACATCAGATACTCTACCTAGCAGTAGCAAGGCCGAAACATCGAAAGCATCTATTATTTCATCATCACCAAACTTGTCTGCACCATCGTTCATAAAGAAAAATAAAACACAAGAGGCAGCTAAAGATGGAATGAATAAACCTGCAATTGTTAACGGAAGTAAGAAGTCAGGAGGAGATGAAACAAGTGACAAGAAAGGTAAGGAGGCAATGCAGGCTCCTCCTCATCCACTTGGTTCCTCGGTAAAGTCGACAAATAAGCCTGGAGTTGACAAATCGGAGCCTAGTTTGGTGACACCAACAAGACCGTCCAATCCATTTTTGAAGTCCTCAATGAAATGA
Protein sequence

>MsG0280009289.01.T01

MKVRLMKMREAHTQKGGRASFCSLVWDQKAEHLVTASSSDVSVSIHNPLLPSSAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHRGPVTGLAFDPNGEYLASLDSTGTVIIWELHSGKNLHNLKGIAPDTGLDLLTMNVLCWSPDGETLAIPGLKNDVVMYDRDTAEKLFTLRGDHIQPICFLCWSPNGKYMATSGLDKQILIWDVDKKQDIDRQKFDERVCCMAWKPIGNALAVIDVMGKYGIWDNVIPSSMKSPTEDIPMLGKNGNGLLLFDEEEEDNSVSGSLSDLGENSNGEFEPPTSRKRLRKHSFSEENLDEDGEEYGIDLFPKVESHKKRNRSVKEKLDNGSVGFRSTMVTSKTKMQEAFQSGSTPVQPGKRRFLCYNMLGSITTVDHDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFESEEVKVVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPAVTASGFKDKLVVVTHASDCLSSNDQVLEFSLFNIAQGTQPLRGRLPITPGSSLSWFGFSEEGQLCSYDSKGVLRLYTSQFGGSWFPVFSAIKEKKTDENYWMVGLNTNKLVCVVLKKPESFPQVVPKPILTLMNLSFPLATSDLGAEALENEFMMNSMHLFEVQKKMEEMDNAGLDASLLDDDAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFNDILEERLYNEVKKTTDTNLKENSSAPITSDTLPSSSKAETSKASIISSSPNLSAPSFIKKNKTQEAAKDGMNKPAIVNGSKKSGGDETSDKKGKEAMQAPPHPLGSSVKSTNKPGVDKSEPSLVTPTRPSNPFLKSSMK*