AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013898.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013898.01.T01 MTR_1g061970 73.455 437 105 4 11 444 63 491 0.0 646
MsG0380013898.01.T01 MTR_4g049910 69.157 415 111 3 30 443 51 449 0.0 564
MsG0380013898.01.T01 MTR_0427s0010 64.143 251 63 2 193 443 1 224 3.71e-104 309
MsG0380013898.01.T01 MTR_2g438110 32.009 428 254 14 6 426 2 399 2.72e-57 194
MsG0380013898.01.T01 MTR_8g018400 33.081 396 232 11 34 426 41 406 2.78e-57 194
MsG0380013898.01.T01 MTR_2g039960 32.338 402 237 11 34 431 41 411 2.87e-57 194
MsG0380013898.01.T01 MTR_2g099620 33.501 397 229 12 34 426 25 390 1.28e-55 189
MsG0380013898.01.T01 MTR_2g099620 33.501 397 229 12 34 426 41 406 1.61e-55 190
MsG0380013898.01.T01 MTR_4g125970 32.170 401 239 11 34 431 41 411 4.27e-55 189
MsG0380013898.01.T01 MTR_4g125970 32.170 401 239 11 34 431 58 428 9.35e-55 188
MsG0380013898.01.T01 MTR_7g076830 30.923 401 240 12 30 426 139 506 3.07e-50 178
MsG0380013898.01.T01 MTR_7g076820 30.673 401 241 12 30 426 146 513 3.20e-50 178
MsG0380013898.01.T01 MTR_7g076800 30.923 401 240 12 30 426 137 504 3.38e-50 178
MsG0380013898.01.T01 MTR_4g010565 30.273 403 240 13 35 428 125 495 2.74e-46 167
MsG0380013898.01.T01 MTR_3g107420 29.925 401 244 12 35 428 48 418 1.11e-45 164
MsG0380013898.01.T01 MTR_1g012420 29.676 401 245 12 35 428 48 418 1.37e-45 164
MsG0380013898.01.T01 MTR_4g114120 30.052 386 219 14 35 396 141 499 7.87e-36 140
MsG0380013898.01.T01 MTR_2g100230 29.805 359 215 11 54 403 115 445 2.38e-35 137
MsG0380013898.01.T01 MTR_6g082080 29.829 409 244 16 27 426 3 377 3.91e-35 135
MsG0380013898.01.T01 MTR_7g056830 29.340 409 246 16 27 426 3 377 1.15e-34 134
MsG0380013898.01.T01 MTR_7g109720 28.010 382 232 13 34 403 232 582 3.13e-34 136
MsG0380013898.01.T01 MTR_3g083690 27.089 395 230 14 34 400 145 509 1.44e-32 130
MsG0380013898.01.T01 MTR_5g027840 30.833 360 202 10 54 396 121 450 2.77e-32 129
MsG0380013898.01.T01 MTR_2g032630 27.532 385 239 14 34 409 496 849 3.04e-32 130
MsG0380013898.01.T01 MTR_4g134170 29.574 399 221 14 34 403 287 654 3.83e-32 129
MsG0380013898.01.T01 MTR_1g054630 28.866 388 231 13 34 400 154 517 3.95e-32 129
MsG0380013898.01.T01 MTR_2g066050 28.842 423 255 15 4 415 25 412 4.30e-32 128
MsG0380013898.01.T01 MTR_8g018370 28.134 359 210 9 71 426 4 317 1.24e-31 123
MsG0380013898.01.T01 MTR_4g105100 27.513 378 236 11 35 403 203 551 1.60e-31 127
MsG0380013898.01.T01 MTR_7g100820 28.607 402 246 12 34 426 130 499 1.66e-31 127
MsG0380013898.01.T01 MTR_2g007000 30.579 363 213 13 54 405 523 857 3.12e-31 127
MsG0380013898.01.T01 MTR_6g005320 29.323 399 220 15 34 403 249 614 2.31e-30 124
MsG0380013898.01.T01 MTR_3g449250 27.446 368 228 11 74 431 127 465 6.60e-30 122
MsG0380013898.01.T01 MTR_3g449250 27.446 368 228 11 74 431 127 465 1.11e-29 121
MsG0380013898.01.T01 MTR_3g467550 27.968 379 229 14 34 396 117 467 1.12e-29 121
MsG0380013898.01.T01 MTR_3g049990 27.470 415 252 14 31 430 149 529 3.73e-29 121
MsG0380013898.01.T01 MTR_5g090120 26.158 367 234 10 74 431 118 456 5.23e-29 120
MsG0380013898.01.T01 MTR_4g079320 28.535 389 220 15 35 405 20 368 7.77e-29 120
MsG0380013898.01.T01 MTR_1g046570 28.969 359 196 11 76 398 30 365 1.13e-28 117
MsG0380013898.01.T01 MTR_6g005550 26.667 375 226 12 54 414 184 523 1.99e-28 119
MsG0380013898.01.T01 MTR_3g467550 28.150 373 224 14 40 396 92 436 2.38e-28 117
MsG0380013898.01.T01 MTR_8g027780 28.676 408 231 18 35 416 107 480 4.43e-28 117
MsG0380013898.01.T01 MTR_8g027775 29.471 397 226 16 35 408 103 468 5.60e-28 117
MsG0380013898.01.T01 MTR_2g041140 27.160 405 249 13 31 422 138 509 6.29e-28 117
MsG0380013898.01.T01 MTR_0915s0010 28.428 299 192 10 47 341 2 282 2.72e-27 110
MsG0380013898.01.T01 MTR_1g102410 27.962 422 231 16 60 444 69 454 3.83e-27 114
MsG0380013898.01.T01 MTR_8g097000 28.095 420 236 20 26 416 280 662 4.01e-27 115
MsG0380013898.01.T01 MTR_1g095810 28.125 384 232 13 34 402 145 499 1.23e-26 113
MsG0380013898.01.T01 MTR_3g467550 28.116 345 218 13 34 362 117 447 3.99e-26 110
MsG0380013898.01.T01 MTR_6g056080 29.178 377 217 14 60 419 128 471 4.47e-26 111
MsG0380013898.01.T01 MTR_2g063080 25.221 452 254 14 27 418 98 525 5.48e-26 110
MsG0380013898.01.T01 MTR_8g027770 28.325 406 235 17 35 416 202 575 8.69e-26 110
MsG0380013898.01.T01 MTR_1g026830 27.344 384 235 13 34 402 147 501 2.33e-25 109
MsG0380013898.01.T01 MTR_6g033070 26.263 396 248 15 24 405 128 493 3.72e-24 105
MsG0380013898.01.T01 MTR_4g068990 27.431 401 240 18 35 415 69 438 8.77e-24 104
MsG0380013898.01.T01 MTR_5g092560 26.913 379 234 13 35 396 69 421 2.07e-23 103
MsG0380013898.01.T01 MTR_1g083130 26.004 473 261 18 13 426 5 447 8.82e-23 101
MsG0380013898.01.T01 MTR_4g105100 26.061 330 228 8 35 359 203 521 3.38e-22 99.4
MsG0380013898.01.T01 MTR_8g027780 29.429 350 202 16 35 358 107 437 1.17e-20 94.4
MsG0380013898.01.T01 MTR_4g112340 27.027 370 228 16 50 405 112 453 2.63e-19 90.9
MsG0380013898.01.T01 MTR_2g055850 26.943 386 242 15 29 402 86 443 4.04e-19 90.1
MsG0380013898.01.T01 MTR_3g107420 32.536 209 123 7 35 237 48 244 4.27e-19 88.2
MsG0380013898.01.T01 MTR_5g069330 24.725 364 239 14 34 390 7 342 1.39e-17 84.7
MsG0380013898.01.T01 MTR_5g069330 24.725 364 239 14 34 390 3 338 1.56e-17 84.7
MsG0380013898.01.T01 MTR_4g059460 25.503 447 236 19 25 396 35 459 1.85e-17 85.1
MsG0380013898.01.T01 MTR_4g131750 23.545 378 242 10 42 395 89 443 5.41e-16 80.5
MsG0380013898.01.T01 MTR_6g039840 25.767 326 199 12 105 415 11 308 2.83e-15 78.2
MsG0380013898.01.T01 MTR_8g042690 24.860 358 215 14 58 396 41 363 8.48e-14 73.6
MsG0380013898.01.T01 MTR_4g459350 28.261 230 135 10 25 230 32 255 2.48e-11 64.7
MsG0380013898.01.T01 MTR_8g032230 33.766 154 93 6 34 183 10 158 3.78e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013898.01.T01 AT3G53110 60.048 418 152 8 30 443 88 494 4.40e-171 489
MsG0380013898.01.T01 AT1G72730 33.659 410 237 12 20 426 30 407 1.69e-60 203
MsG0380013898.01.T01 AT3G19760 31.313 396 239 11 34 426 36 401 3.81e-55 189
MsG0380013898.01.T01 AT3G13920 32.576 396 234 11 34 426 30 395 4.43e-55 188
MsG0380013898.01.T01 AT3G13920 32.323 396 235 10 34 426 40 405 5.33e-55 188
MsG0380013898.01.T01 AT4G00660 31.920 401 236 12 30 426 128 495 7.32e-54 187
MsG0380013898.01.T01 AT4G00660 31.920 401 236 12 30 426 128 495 7.32e-54 187
MsG0380013898.01.T01 AT3G13920 32.071 396 231 10 34 426 40 400 1.80e-53 184
MsG0380013898.01.T01 AT1G54270 32.323 396 235 11 34 426 40 405 1.90e-53 184
MsG0380013898.01.T01 AT3G13920 32.808 381 223 11 34 411 40 390 4.81e-53 183
MsG0380013898.01.T01 AT3G13920 32.808 381 223 11 34 411 44 394 5.50e-53 183
MsG0380013898.01.T01 AT1G54270 32.071 396 231 11 34 426 40 400 6.67e-52 180
MsG0380013898.01.T01 AT2G45810 31.421 401 238 12 30 426 151 518 1.42e-51 182
MsG0380013898.01.T01 AT3G61240 31.421 401 238 12 30 426 121 488 1.44e-51 181
MsG0380013898.01.T01 AT3G61240 31.421 401 238 12 30 426 121 488 1.44e-51 181
MsG0380013898.01.T01 AT1G51380 30.303 396 243 11 34 426 23 388 2.82e-49 172
MsG0380013898.01.T01 AT5G11170 30.025 403 241 13 35 428 48 418 2.84e-46 166
MsG0380013898.01.T01 AT5G11200 30.025 403 241 13 35 428 48 418 2.84e-46 166
MsG0380013898.01.T01 AT5G11170 29.558 362 219 10 75 428 2 335 9.53e-43 154
MsG0380013898.01.T01 AT5G11200 27.045 440 247 13 35 428 48 459 6.36e-40 149
MsG0380013898.01.T01 AT5G11200 26.974 456 245 14 35 428 48 477 1.65e-38 145
MsG0380013898.01.T01 AT3G22310 27.685 419 251 15 37 440 120 501 1.01e-35 139
MsG0380013898.01.T01 AT3G22310 27.685 419 251 15 37 440 120 501 1.13e-35 139
MsG0380013898.01.T01 AT3G01540 28.426 394 234 16 34 414 159 517 1.54e-35 139
MsG0380013898.01.T01 AT3G01540 28.426 394 234 16 34 414 159 517 1.72e-35 139
MsG0380013898.01.T01 AT3G01540 28.426 394 234 16 34 414 159 517 1.72e-35 139
MsG0380013898.01.T01 AT3G01540 28.426 394 234 16 34 414 159 517 1.72e-35 139
MsG0380013898.01.T01 AT5G14610 28.000 425 258 15 4 414 130 520 2.72e-35 139
MsG0380013898.01.T01 AT5G14610 28.000 425 258 15 4 414 138 528 3.07e-35 138
MsG0380013898.01.T01 AT5G14610 28.000 425 258 15 4 414 130 520 3.25e-35 138
MsG0380013898.01.T01 AT5G63120 26.596 376 242 10 35 403 167 515 1.27e-34 136
MsG0380013898.01.T01 AT3G22330 27.053 414 258 13 37 439 108 488 2.04e-34 135
MsG0380013898.01.T01 AT3G09720 28.974 390 236 11 44 426 152 507 3.63e-34 134
MsG0380013898.01.T01 AT3G09720 28.974 390 236 11 44 426 152 507 3.63e-34 134
MsG0380013898.01.T01 AT1G31970 30.194 361 204 8 54 396 134 464 7.69e-34 133
MsG0380013898.01.T01 AT3G06480 28.158 380 239 12 34 406 436 788 9.13e-34 135
MsG0380013898.01.T01 AT5G60990 29.551 423 223 18 34 426 10 387 2.21e-33 131
MsG0380013898.01.T01 AT1G16280 28.883 412 257 13 28 432 53 435 6.27e-33 130
MsG0380013898.01.T01 AT2G42520 27.456 397 225 14 34 400 160 523 8.68e-33 131
MsG0380013898.01.T01 AT2G42520 27.456 397 225 14 34 400 160 523 8.68e-33 131
MsG0380013898.01.T01 AT2G42520 27.456 397 225 14 34 400 160 523 8.68e-33 131
MsG0380013898.01.T01 AT3G58510 27.989 368 221 11 53 400 170 513 2.78e-32 129
MsG0380013898.01.T01 AT3G58510 27.989 368 221 11 53 400 170 513 2.78e-32 129
MsG0380013898.01.T01 AT3G58510 27.989 368 221 11 53 400 170 513 2.78e-32 129
MsG0380013898.01.T01 AT3G58570 28.645 391 228 13 34 400 147 510 3.86e-32 129
MsG0380013898.01.T01 AT1G20920 29.121 364 219 13 51 403 208 543 5.48e-32 129
MsG0380013898.01.T01 AT5G14610 27.882 373 224 13 54 414 249 588 7.22e-32 129
MsG0380013898.01.T01 AT5G14610 27.882 373 224 13 54 414 50 389 1.14e-31 127
MsG0380013898.01.T01 AT5G14610 27.882 373 224 13 54 414 50 389 1.14e-31 127
MsG0380013898.01.T01 AT5G26742 27.792 403 237 14 44 432 28 390 1.30e-31 128
MsG0380013898.01.T01 AT5G26742 28.150 373 225 13 74 432 140 483 2.13e-31 127
MsG0380013898.01.T01 AT5G26742 28.150 373 225 13 74 432 140 483 2.13e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT1G20920 29.201 363 218 13 52 403 547 881 2.72e-31 127
MsG0380013898.01.T01 AT2G33730 28.822 399 224 14 34 403 314 681 3.33e-31 127
MsG0380013898.01.T01 AT5G08620 27.752 436 250 17 12 416 54 455 1.18e-30 124
MsG0380013898.01.T01 AT1G55150 27.778 360 221 11 54 403 119 449 5.29e-30 122
MsG0380013898.01.T01 AT1G55150 27.042 355 230 8 54 403 144 474 6.43e-30 122
MsG0380013898.01.T01 AT4G16630 29.187 418 239 18 32 430 166 545 1.41e-29 122
MsG0380013898.01.T01 AT2G47330 26.873 387 230 15 34 403 229 579 7.46e-29 120
MsG0380013898.01.T01 AT5G14610 28.117 377 236 14 4 366 138 493 1.18e-27 115
MsG0380013898.01.T01 AT1G77030 27.604 384 230 16 35 405 30 378 3.50e-27 115
MsG0380013898.01.T01 AT1G12770 24.161 447 254 14 31 419 108 527 4.59e-27 114
MsG0380013898.01.T01 AT1G12770 24.161 447 254 14 31 419 108 527 4.59e-27 114
MsG0380013898.01.T01 AT1G28180 28.696 345 205 11 73 405 10 325 6.01e-27 111
MsG0380013898.01.T01 AT5G08610 27.340 406 247 14 31 416 380 757 6.87e-27 114
MsG0380013898.01.T01 AT5G54910 27.110 391 246 15 35 415 73 434 2.00e-26 112
MsG0380013898.01.T01 AT3G09620 27.895 380 205 14 35 403 399 720 3.25e-26 112
MsG0380013898.01.T01 AT3G09620 27.895 380 205 14 35 403 398 719 3.56e-26 112
MsG0380013898.01.T01 AT5G62190 27.733 375 225 12 60 419 122 465 6.17e-26 111
MsG0380013898.01.T01 AT3G02065 27.027 407 253 14 34 427 111 486 6.70e-26 110
MsG0380013898.01.T01 AT3G02065 27.027 407 253 14 34 427 111 486 6.70e-26 110
MsG0380013898.01.T01 AT3G18600 29.839 372 224 12 34 396 90 433 7.50e-26 110
MsG0380013898.01.T01 AT4G33370 28.297 364 212 12 57 402 120 452 1.71e-25 109
MsG0380013898.01.T01 AT3G06480 27.576 330 220 10 34 357 436 752 2.16e-25 109
MsG0380013898.01.T01 AT5G63630 27.431 401 245 15 35 416 56 429 2.41e-25 108
MsG0380013898.01.T01 AT5G51280 28.010 382 202 16 51 402 163 501 2.58e-25 109
MsG0380013898.01.T01 AT5G63120 26.168 321 217 9 35 348 167 474 4.81e-25 107
MsG0380013898.01.T01 AT5G63120 26.168 321 217 9 35 348 167 474 4.81e-25 107
MsG0380013898.01.T01 AT5G63120 26.168 321 217 9 35 348 167 474 4.81e-25 107
MsG0380013898.01.T01 AT5G63120 26.168 321 217 9 35 348 167 474 6.48e-25 107
MsG0380013898.01.T01 AT5G63630 27.431 401 245 15 35 416 250 623 1.41e-24 107
MsG0380013898.01.T01 AT3G02065 26.703 367 228 12 74 427 11 349 1.61e-22 99.0
MsG0380013898.01.T01 AT5G65900 27.968 379 233 15 29 396 150 499 2.31e-22 100
MsG0380013898.01.T01 AT1G63250 25.670 448 263 17 29 440 324 737 5.17e-22 99.8
MsG0380013898.01.T01 AT1G51380 27.239 268 177 8 34 298 23 275 7.98e-22 95.5
MsG0380013898.01.T01 AT2G07750 25.785 446 267 16 29 441 371 785 8.06e-22 99.0
MsG0380013898.01.T01 AT5G19210 25.503 447 278 16 2 418 42 463 1.33e-21 97.4
MsG0380013898.01.T01 AT4G09730 23.940 401 258 15 35 415 114 487 5.21e-20 93.2
MsG0380013898.01.T01 AT1G51380 27.354 223 146 7 34 253 23 232 7.22e-17 81.3
MsG0380013898.01.T01 AT1G51380 27.354 223 146 7 34 253 23 232 1.05e-16 80.9
MsG0380013898.01.T01 AT1G71370 26.010 396 242 15 33 407 14 379 1.22e-16 82.8
MsG0380013898.01.T01 AT3G06980 24.485 437 255 15 31 426 372 774 1.64e-14 76.3
MsG0380013898.01.T01 AT2G40700 28.740 254 145 10 2 232 5 245 6.18e-14 74.3

Find 108 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAAGATTGAAAACGATTT+TGG 0.149747 3:-47706894 MsG0380013898.01.T01:CDS
TAGTCTTCAACACTTCTTTC+TGG 0.220635 3:+47706711 None:intergenic
CTTTATATCCCATATCAAAA+AGG 0.236885 3:+47707902 None:intergenic
ACAACTTCGAATCCGTTTAA+TGG 0.239137 3:-47710220 None:intergenic
CACTAGAGAGTTAGCTATTC+AGG 0.252333 3:-47709785 MsG0380013898.01.T01:intron
CAAGAAAGATTAGCCACTTT+TGG 0.263217 3:+47706647 None:intergenic
TAATCTTTCTTGAGTTGATA+TGG 0.270599 3:-47706636 MsG0380013898.01.T01:three_prime_UTR
GTTGGTAGGGCTGGGCGATT+TGG 0.277271 3:-47707564 MsG0380013898.01.T01:CDS
TTGTACAGGGTTGGTAGGGC+TGG 0.295738 3:-47707573 MsG0380013898.01.T01:CDS
CATCCCATTCACCACATATC+AGG 0.298287 3:+47706928 None:intergenic
AGAAACTATATACTTGAAAT+AGG 0.320511 3:-47707991 MsG0380013898.01.T01:CDS
AGACTATAAAGTTGCTCTTA+AGG 0.339137 3:-47706694 MsG0380013898.01.T01:CDS
CCTCTTGAATGTTGAGCAAC+GGG 0.357348 3:+47710139 None:intergenic
CTGACAGTGACAGTTTGAAT+TGG 0.370000 3:+47708338 None:intergenic
GCGCAAGCACCCATGGGTTC+AGG 0.379223 3:-47709889 MsG0380013898.01.T01:CDS
ATAATATCGATACTTGTTGT+TGG 0.383189 3:-47706484 MsG0380013898.01.T01:three_prime_UTR
AAGTTCTAGAGCATCTAGTA+TGG 0.383863 3:+47707873 None:intergenic
AATGCTGTTCTCCGTAAGAT+TGG 0.395214 3:-47709330 MsG0380013898.01.T01:CDS
CAATTCAAACTGTCACTGTC+AGG 0.414374 3:-47708337 MsG0380013898.01.T01:intron
GAGGAAATCCGATGTCAAAA+AGG 0.416345 3:-47709263 MsG0380013898.01.T01:CDS
TGAGAATCATCGGTAAGCTT+AGG 0.423471 3:+47709935 None:intergenic
ATCATGGCTCAAATACTTAT+CGG 0.423691 3:-47709234 MsG0380013898.01.T01:CDS
ATAAGTATTTGAGCCATGAT+AGG 0.425342 3:+47709237 None:intergenic
CTGATTTGAATCACCAAAAG+TGG 0.438489 3:-47706660 MsG0380013898.01.T01:exon
GAGAATCATCGGTAAGCTTA+GGG 0.442602 3:+47709936 None:intergenic
CCGTGGCTTTGATAATCAAC+AGG 0.443501 3:-47707776 MsG0380013898.01.T01:intron
TGTATTTGTACAGGGTTGGT+AGG 0.443839 3:-47707578 MsG0380013898.01.T01:CDS
TTCCACTACCTCTTCTTCAC+CGG 0.444923 3:-47710187 MsG0380013898.01.T01:CDS
AAAGTTGCTCTTAAGGAAGC+TGG 0.446114 3:-47706687 MsG0380013898.01.T01:CDS
TGTACAGGGTTGGTAGGGCT+GGG 0.452793 3:-47707572 MsG0380013898.01.T01:CDS
ATTGTGAGGTGTATTTGTAC+AGG 0.455973 3:-47707587 MsG0380013898.01.T01:CDS
AGTACATTACCTCTGTTACA+TGG 0.461726 3:+47706868 None:intergenic
CGTAAGATTGGGAAGTTCAC+GGG 0.463544 3:-47709318 MsG0380013898.01.T01:CDS
AAGAAGGTTCTGCCATTAAA+CGG 0.466049 3:+47710208 None:intergenic
TCAATCTTAGAGAGTTCATC+AGG 0.467172 3:+47708021 None:intergenic
CCTCTCGCCGGAGCTTCTGA+AGG 0.471545 3:-47710004 MsG0380013898.01.T01:CDS
CTGAATAGCTAACTCTCTAG+TGG 0.485079 3:+47709786 None:intergenic
GTATTTGTACAGGGTTGGTA+GGG 0.485141 3:-47707577 MsG0380013898.01.T01:CDS
ATCAAATTCTGAATCGTGCC+AGG 0.485474 3:+47709207 None:intergenic
ATGCTGTTCTCCGTAAGATT+GGG 0.492209 3:-47709329 MsG0380013898.01.T01:CDS
CCGTAAGATTGGGAAGTTCA+CGG 0.493789 3:-47709319 MsG0380013898.01.T01:CDS
TTTGATTGCGCAAGCACCCA+TGG 0.495123 3:-47709896 MsG0380013898.01.T01:CDS
CCGTGAACTTCCCAATCTTA+CGG 0.501266 3:+47709319 None:intergenic
GCTTGAGGAGCATGCAAGGT+TGG 0.505733 3:+47709823 None:intergenic
TGAATAGCTAACTCTCTAGT+GGG 0.508229 3:+47709787 None:intergenic
ATTGTCGAGGAGTTTAAAGA+TGG 0.510565 3:-47707835 MsG0380013898.01.T01:CDS
CGAAGAGCTGTCCCTCTCGC+CGG 0.516549 3:-47710016 MsG0380013898.01.T01:CDS
GGCTGGGCGATTTGGACGCA+AGG 0.518484 3:-47707556 MsG0380013898.01.T01:CDS
TAACCTGATATGTGGTGAAT+GGG 0.520406 3:-47706931 MsG0380013898.01.T01:CDS
GAGGTGTATTTGTACAGGGT+TGG 0.525856 3:-47707582 MsG0380013898.01.T01:CDS
CGCCGGTGAAGAAGAGGTAG+TGG 0.526157 3:+47710185 None:intergenic
GAAGAAGAGGTAGTGGAAGA+AGG 0.528282 3:+47710192 None:intergenic
AAGCTCAGGTTCACGACCAT+GGG 0.530520 3:+47707611 None:intergenic
AGGGACAGCTCTTCGAAGGT+TGG 0.531548 3:+47710024 None:intergenic
TAGAGTCCCTTCAGAAGCTC+CGG 0.532105 3:+47709997 None:intergenic
GTTTAAAGATGGTTTGACTC+AGG 0.533981 3:-47707824 MsG0380013898.01.T01:CDS
GAGCAACGGGGTTTCTGCGG+CGG 0.536633 3:+47710152 None:intergenic
ACTTGAAATAGGAGAGAAAG+TGG 0.538252 3:-47707980 MsG0380013898.01.T01:CDS
CTTCAGAAGCTCCGGCGAGA+GGG 0.544428 3:+47710005 None:intergenic
TTAACCTGATATGTGGTGAA+TGG 0.545463 3:-47706932 MsG0380013898.01.T01:CDS
GATTCTCAATCCTCCACATA+GGG 0.545521 3:-47709920 MsG0380013898.01.T01:CDS
ACCTCTTGAATGTTGAGCAA+CGG 0.546825 3:+47710138 None:intergenic
TCAGAATGTGCAGTTTCTAT+CGG 0.550830 3:-47709288 MsG0380013898.01.T01:CDS
TACACCTCACAATCAAGCTC+AGG 0.552316 3:+47707597 None:intergenic
TCGTCTGATGTTCTTGCCCG+TGG 0.555694 3:-47707793 MsG0380013898.01.T01:CDS
GTACATTACCTCTGTTACAT+GGG 0.556403 3:+47706869 None:intergenic
CAAATACTTATCGGTACTCC+TGG 0.560226 3:-47709225 MsG0380013898.01.T01:CDS
GTTGAGCAACGGGGTTTCTG+CGG 0.561285 3:+47710149 None:intergenic
TGATTCTCAATCCTCCACAT+AGG 0.562100 3:-47709921 MsG0380013898.01.T01:CDS
CAAGCTCAGGTTCACGACCA+TGG 0.565884 3:+47707610 None:intergenic
CTCTCGCCGGAGCTTCTGAA+GGG 0.569924 3:-47710003 MsG0380013898.01.T01:CDS
TGATTCTCTGAGGATAATGA+AGG 0.570726 3:-47708373 MsG0380013898.01.T01:CDS
TTGTGAGGTGTATTTGTACA+GGG 0.574699 3:-47707586 MsG0380013898.01.T01:CDS
CGAGAGGGACAGCTCTTCGA+AGG 0.574970 3:+47710020 None:intergenic
GCGGCGGAGCATTTACTCGC+CGG 0.576722 3:+47710168 None:intergenic
TGTGGAGGATTGAGAATCAT+CGG 0.576793 3:+47709925 None:intergenic
TTGATTGCGCAAGCACCCAT+GGG 0.576901 3:-47709895 MsG0380013898.01.T01:CDS
CCCGTTGCTCAACATTCAAG+AGG 0.579244 3:-47710139 MsG0380013898.01.T01:intron
CCTTCAGAAGCTCCGGCGAG+AGG 0.586249 3:+47710004 None:intergenic
AAATTTAGTAAACTGCATGT+TGG 0.595750 3:-47706542 MsG0380013898.01.T01:three_prime_UTR
TTGAAATAGGAGAGAAAGTG+GGG 0.598223 3:-47707978 MsG0380013898.01.T01:CDS
GATAGCTTGAGGAGCATGCA+AGG 0.599547 3:+47709819 None:intergenic
CCTGTTGATTATCAAAGCCA+CGG 0.601464 3:+47707776 None:intergenic
TACTCGACAGTGAACTTCAG+TGG 0.602727 3:+47707636 None:intergenic
TTTACTCGCCGGTGAAGAAG+AGG 0.604912 3:+47710179 None:intergenic
TGTGCAGTTTCTATCGGCGG+AGG 0.608472 3:-47709282 MsG0380013898.01.T01:CDS
CACAAAATTAACATGTGGAG+AGG 0.609382 3:+47706518 None:intergenic
CGAGAGAGACAAGATTGTCG+AGG 0.612581 3:-47707848 MsG0380013898.01.T01:CDS
CTTGAAATAGGAGAGAAAGT+GGG 0.618156 3:-47707979 MsG0380013898.01.T01:CDS
TTTGACACAAAATTAACATG+TGG 0.619230 3:+47706513 None:intergenic
GGGCAAATGCAGATAGCTTG+AGG 0.622258 3:+47709808 None:intergenic
TTCACTGTCGAGTACACCCA+TGG 0.624852 3:-47707627 MsG0380013898.01.T01:CDS
CTGTTGATTATCAAAGCCAC+GGG 0.626209 3:+47707777 None:intergenic
TATCACAAAGATTGTTGACA+AGG 0.626742 3:-47708115 MsG0380013898.01.T01:CDS
GAATGTGCAGTTTCTATCGG+CGG 0.629056 3:-47709285 MsG0380013898.01.T01:CDS
TGCGCAATCAAATCCCTATG+TGG 0.644660 3:+47709907 None:intergenic
CATACCAAGCACAAAACAAG+CGG 0.646286 3:+47709861 None:intergenic
GTAAGATTGGGAAGTTCACG+GGG 0.647484 3:-47709317 MsG0380013898.01.T01:CDS
TGAACCTGAGCTTGATTGTG+AGG 0.649033 3:-47707601 MsG0380013898.01.T01:CDS
GCTGTATTTAACCTGATATG+TGG 0.649135 3:-47706939 MsG0380013898.01.T01:CDS
AATTCTGCTCCAGGTTACGT+CGG 0.652366 3:-47710049 MsG0380013898.01.T01:intron
GCTTCTGAAGGGACTCTACG+TGG 0.665665 3:-47709992 MsG0380013898.01.T01:CDS
GATATAAATCTGATTCTCTG+AGG 0.672867 3:-47708383 MsG0380013898.01.T01:CDS
GCAATCAAATCCCTATGTGG+AGG 0.677952 3:+47709910 None:intergenic
CTCTTGAATGTTGAGCAACG+GGG 0.678380 3:+47710140 None:intergenic
GCTGGGCGATTTGGACGCAA+GGG 0.680282 3:-47707555 MsG0380013898.01.T01:intron
TGCTGATCAACTGTTTGCTG+AGG 0.686397 3:-47709133 MsG0380013898.01.T01:intron
GAATAGCTAACTCTCTAGTG+GGG 0.713974 3:+47709788 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAGGTAATTATATTTA+AGG + Chr3:47707723-47707742 None:intergenic 10.0%
!!! TATGTTTTTTTTTATAAGAA+AGG - Chr3:47707901-47707920 MsG0380013898.01.T01:CDS 10.0%
!! AAACATACATAATAATGATT+TGG + Chr3:47707888-47707907 None:intergenic 15.0%
!! CAAATAAGAAAATAAATGAT+AGG + Chr3:47707190-47707209 None:intergenic 15.0%
!! TAGGATTTGAATTATATTTA+AGG + Chr3:47707664-47707683 None:intergenic 15.0%
!! TTTATCATTTCAAAATTGAA+TGG + Chr3:47708071-47708090 None:intergenic 15.0%
!!! ATTGAATGTAAAATTTTGAA+TGG - Chr3:47710003-47710022 MsG0380013898.01.T01:CDS 15.0%
!!! ATTTTGAAATGATAAATCAA+AGG - Chr3:47708075-47708094 MsG0380013898.01.T01:CDS 15.0%
!!! ATTTTTACATTTGTTTTCAT+TGG - Chr3:47709622-47709641 MsG0380013898.01.T01:intron 15.0%
!!! TGATTTTCTCAAATTATTAA+AGG + Chr3:47707023-47707042 None:intergenic 15.0%
!! AAATTAAAAGACTTAGCATT+TGG + Chr3:47709606-47709625 None:intergenic 20.0%
!! ACTGATAATTTGAAAAAATC+AGG - Chr3:47706890-47706909 MsG0380013898.01.T01:CDS 20.0%
!! AGAAACTATATACTTGAAAT+AGG - Chr3:47708604-47708623 MsG0380013898.01.T01:intron 20.0%
!! ATTGATTGAAAAAAAGTTGT+TGG - Chr3:47709249-47709268 MsG0380013898.01.T01:CDS 20.0%
!! CTTAAAGAAAATGTATGTTT+GGG + Chr3:47707998-47708017 None:intergenic 20.0%
!! GTAGTTTCTAAATTTAATGT+CGG - Chr3:47707632-47707651 MsG0380013898.01.T01:CDS 20.0%
!! TCTTCCTTATAAAAACAAAA+TGG - Chr3:47710190-47710209 MsG0380013898.01.T01:CDS 20.0%
!! TTAAATGTATGTTTGTGTAT+GGG - Chr3:47708098-47708117 MsG0380013898.01.T01:CDS 20.0%
!! TTTATATCCCATATCAAAAA+GGG + Chr3:47708695-47708714 None:intergenic 20.0%
!!! ATAGCATTTAGTATTTTGTT+AGG - Chr3:47709497-47709516 MsG0380013898.01.T01:intron 20.0%
!!! ATTTTACATTCAATTACTCT+TGG + Chr3:47709997-47710016 None:intergenic 20.0%
!!! ATTTTTGATATTTTCAGTAG+TGG - Chr3:47709575-47709594 MsG0380013898.01.T01:intron 20.0%
!!! TTTTTTCAATCAATGAAACA+TGG + Chr3:47709243-47709262 None:intergenic 20.0%
! AAAACACATGTTTCTTGTAT+TGG + Chr3:47708328-47708347 None:intergenic 25.0%
! AAATTTAGTAAACTGCATGT+TGG - Chr3:47710053-47710072 MsG0380013898.01.T01:intron 25.0%
! AACCTAAACAATCCAATAAA+AGG + Chr3:47708915-47708934 None:intergenic 25.0%
! AAGTATTTCTTATAAAGGCT+TGG - Chr3:47709452-47709471 MsG0380013898.01.T01:intron 25.0%
! ACCAGAAAATGTTAAAATAC+AGG + Chr3:47709523-47709542 None:intergenic 25.0%
! ATTTGTTTACCCTAAAAGTT+AGG + Chr3:47707511-47707530 None:intergenic 25.0%
! CCTTATAAAAACAAAATGGT+GGG - Chr3:47710194-47710213 MsG0380013898.01.T01:CDS 25.0%
! CTCGAATAAAAAAATTCTGA+AGG - Chr3:47710141-47710160 MsG0380013898.01.T01:CDS 25.0%
! CTTTATATCCCATATCAAAA+AGG + Chr3:47708696-47708715 None:intergenic 25.0%
! GAATGTGTAGAAAACAAAAA+AGG - Chr3:47707748-47707767 MsG0380013898.01.T01:intron 25.0%
! GCTTAAAGAAAATGTATGTT+TGG + Chr3:47707999-47708018 None:intergenic 25.0%
! GTTAAATGTATGTTTGTGTA+TGG - Chr3:47708097-47708116 MsG0380013898.01.T01:CDS 25.0%
! TCCTTATAAAAACAAAATGG+TGG - Chr3:47710193-47710212 MsG0380013898.01.T01:CDS 25.0%
! TGTGTAGTAAACTGTTTAAT+TGG - Chr3:47709174-47709193 MsG0380013898.01.T01:CDS 25.0%
! TTCTCAAATTATTAAAGGTG+TGG + Chr3:47707018-47707037 None:intergenic 25.0%
! TTGTTTATCCATATAAAGCA+CGG + Chr3:47706938-47706957 None:intergenic 25.0%
! TTGTTTATGGAATTCGAAAA+GGG + Chr3:47707076-47707095 None:intergenic 25.0%
! TTTCAAATTATCAGTTGTGT+TGG + Chr3:47706885-47706904 None:intergenic 25.0%
! TTTCTAAATTTAATGTCGGA+TGG - Chr3:47707636-47707655 MsG0380013898.01.T01:CDS 25.0%
! TTTGACACAAAATTAACATG+TGG + Chr3:47710085-47710104 None:intergenic 25.0%
! TTTGTTTACCCTAAAAGTTA+GGG + Chr3:47707510-47707529 None:intergenic 25.0%
!! ATCCTTTTATTGGATTGTTT+AGG - Chr3:47708910-47708929 MsG0380013898.01.T01:intron 25.0%
!! CTACACATTCTTTTCATATT+AGG + Chr3:47707738-47707757 None:intergenic 25.0%
!! CTCAAAGAAACATTCTTTTT+GGG - Chr3:47709216-47709235 MsG0380013898.01.T01:CDS 25.0%
!! TGAAGATTTTATATTCTGCA+TGG + Chr3:47709773-47709792 None:intergenic 25.0%
!! TTATTCATGCATCCTTTTAT+TGG - Chr3:47708900-47708919 MsG0380013898.01.T01:intron 25.0%
!! TTCATAGGTTAAGTTGTTTA+TGG + Chr3:47707089-47707108 None:intergenic 25.0%
!! TTTTTCTTTGTCAGCTAATT+TGG + Chr3:47707861-47707880 None:intergenic 25.0%
!!! ATAATATCGATACTTGTTGT+TGG - Chr3:47710111-47710130 MsG0380013898.01.T01:intron 25.0%
!!! ATGTTATTTCAGATTCGATA+AGG - Chr3:47709332-47709351 MsG0380013898.01.T01:CDS 25.0%
!!! CTTCAGAATTTTTTTATTCG+AGG + Chr3:47710143-47710162 None:intergenic 25.0%
!!! TAACATCTTTGCACTTTTTA+TGG + Chr3:47708665-47708684 None:intergenic 25.0%
!!! TAATCTTTCTTGAGTTGATA+TGG - Chr3:47709959-47709978 MsG0380013898.01.T01:CDS 25.0%
AATTGTTAAACTTGTGTACC+CGG - Chr3:47707556-47707575 MsG0380013898.01.T01:CDS 30.0%
ACAAAACGATTCATGTAAGT+TGG + Chr3:47709841-47709860 None:intergenic 30.0%
ACATTGTATGAATGTGCAAA+GGG - Chr3:47709803-47709822 MsG0380013898.01.T01:CDS 30.0%
AGACTATAAAGTTGCTCTTA+AGG - Chr3:47709901-47709920 MsG0380013898.01.T01:CDS 30.0%
ATAAGTATTTGAGCCATGAT+AGG + Chr3:47707361-47707380 None:intergenic 30.0%
ATATACAAGAGATGTTCATC+CGG + Chr3:47707578-47707597 None:intergenic 30.0%
ATCATGGCTCAAATACTTAT+CGG - Chr3:47707361-47707380 MsG0380013898.01.T01:intron 30.0%
CAAAACGATTCATGTAAGTT+GGG + Chr3:47709840-47709859 None:intergenic 30.0%
CAAAATACTAAATGCTATCC+TGG + Chr3:47709495-47709514 None:intergenic 30.0%
CACAGTTATGCAGTAAATTA+AGG + Chr3:47708177-47708196 None:intergenic 30.0%
CACGCTGTTAATGAAAAAAA+TGG - Chr3:47707835-47707854 MsG0380013898.01.T01:CDS 30.0%
CATTTCAAAATTGAATGGCT+TGG + Chr3:47708066-47708085 None:intergenic 30.0%
CCAAAAAGAATGTTTCTTTG+AGG + Chr3:47709218-47709237 None:intergenic 30.0%
CTTGAAAGTGAAACTACAAA+TGG + Chr3:47709546-47709565 None:intergenic 30.0%
GAGATGTTCATCTTTAATGT+CGG - Chr3:47707691-47707710 MsG0380013898.01.T01:intron 30.0%
GATATAAATCTGATTCTCTG+AGG - Chr3:47708212-47708231 MsG0380013898.01.T01:intron 30.0%
GATGAACATCTCTTCTATAT+AGG + Chr3:47707683-47707702 None:intergenic 30.0%
GATGAACATCTCTTGTATAT+AGG - Chr3:47707578-47707597 MsG0380013898.01.T01:CDS 30.0%
GGCTCAAGTATTTCTTATAA+AGG - Chr3:47709447-47709466 MsG0380013898.01.T01:intron 30.0%
GTTGTTTATGGAATTCGAAA+AGG + Chr3:47707077-47707096 None:intergenic 30.0%
TATCACAAAGATTGTTGACA+AGG - Chr3:47708480-47708499 MsG0380013898.01.T01:intron 30.0%
TTTCAAGCTTCTTGTATATG+TGG - Chr3:47709303-47709322 MsG0380013898.01.T01:CDS 30.0%
TTTCTTGTATTGGATGGAAA+TGG + Chr3:47708318-47708337 None:intergenic 30.0%
! CCTCAAAGAAACATTCTTTT+TGG - Chr3:47709215-47709234 MsG0380013898.01.T01:CDS 30.0%
! GCTAATTACCCTAACTTTTA+GGG - Chr3:47707499-47707518 MsG0380013898.01.T01:intron 30.0%
! TCGAAGATTGAAAACGATTT+TGG - Chr3:47709701-47709720 MsG0380013898.01.T01:intron 30.0%
! TCTAGAGTAATCATATGTGT+CGG - Chr3:47707138-47707157 MsG0380013898.01.T01:intron 30.0%
! TGAACTTTTTGTGAAGAAAG+AGG - Chr3:47708510-47708529 MsG0380013898.01.T01:intron 30.0%
! TGCTAATTACCCTAACTTTT+AGG - Chr3:47707498-47707517 MsG0380013898.01.T01:intron 30.0%
! TTTGATATTTTCAGTAGTGG+TGG - Chr3:47709578-47709597 MsG0380013898.01.T01:intron 30.0%
!! AGTTTCTAAAACTGTTTGCT+TGG - Chr3:47709065-47709084 MsG0380013898.01.T01:intron 30.0%
!! CAAAAAGTGTTTCTAGAATG+TGG + Chr3:47708021-47708040 None:intergenic 30.0%
!! TCGTTTTGTTAATGTCATTG+TGG - Chr3:47709852-47709871 MsG0380013898.01.T01:CDS 30.0%
!!! CCCACCATTTTGTTTTTATA+AGG + Chr3:47710197-47710216 None:intergenic 30.0%
!!! GCCTGTATTTTAACATTTTC+TGG - Chr3:47709519-47709538 MsG0380013898.01.T01:intron 30.0%
AAGAAGGTTCTGCCATTAAA+CGG + Chr3:47706390-47706409 None:intergenic 35.0%
AATCCTGCTAAATGTAGTGA+TGG + Chr3:47708133-47708152 None:intergenic 35.0%
ACAACTTAACCTATGAACCA+TGG - Chr3:47707092-47707111 MsG0380013898.01.T01:intron 35.0%
ACCTCTCATTTGTAGACATA+TGG - Chr3:47709426-47709445 MsG0380013898.01.T01:intron 35.0%
ACTTGAAATAGGAGAGAAAG+TGG - Chr3:47708615-47708634 MsG0380013898.01.T01:intron 35.0%
AGCTTCTTGTATATGTGGAT+AGG - Chr3:47709308-47709327 MsG0380013898.01.T01:CDS 35.0%
AGTACATTACCTCTGTTACA+TGG + Chr3:47709730-47709749 None:intergenic 35.0%
ATGTAGTAAACTGGTTGCTT+AGG - Chr3:47709149-47709168 MsG0380013898.01.T01:CDS 35.0%
ATTGTCGAGGAGTTTAAAGA+TGG - Chr3:47708760-47708779 MsG0380013898.01.T01:intron 35.0%
ATTGTGAGGTGTATTTGTAC+AGG - Chr3:47709008-47709027 MsG0380013898.01.T01:intron 35.0%
CACAAAATTAACATGTGGAG+AGG + Chr3:47710080-47710099 None:intergenic 35.0%
CACATGTTTCTTGTATTGGA+TGG + Chr3:47708324-47708343 None:intergenic 35.0%
CAGTAACACACAAGACTATT+TGG + Chr3:47708355-47708374 None:intergenic 35.0%
CTTGAAATAGGAGAGAAAGT+GGG - Chr3:47708616-47708635 MsG0380013898.01.T01:intron 35.0%
GACATTGTATGAATGTGCAA+AGG - Chr3:47709802-47709821 MsG0380013898.01.T01:CDS 35.0%
GCTGTATTTAACCTGATATG+TGG - Chr3:47709656-47709675 MsG0380013898.01.T01:intron 35.0%
GCTTCTTGTATATGTGGATA+GGG - Chr3:47709309-47709328 MsG0380013898.01.T01:CDS 35.0%
GGTTGTGTTATGTAGTAAAC+TGG - Chr3:47709140-47709159 MsG0380013898.01.T01:CDS 35.0%
GTACATTACCTCTGTTACAT+GGG + Chr3:47709729-47709748 None:intergenic 35.0%
GTTAATGTCATTGTGGATGT+AGG - Chr3:47709859-47709878 MsG0380013898.01.T01:CDS 35.0%
GTTTAAAGATGGTTTGACTC+AGG - Chr3:47708771-47708790 MsG0380013898.01.T01:intron 35.0%
TAACCTGATATGTGGTGAAT+GGG - Chr3:47709664-47709683 MsG0380013898.01.T01:intron 35.0%
TAGTCTTCAACACTTCTTTC+TGG + Chr3:47709887-47709906 None:intergenic 35.0%
TATACAAGAGATGTTCATCC+GGG + Chr3:47707577-47707596 None:intergenic 35.0%
TATGTCTACAAATGAGAGGT+TGG + Chr3:47709426-47709445 None:intergenic 35.0%
TCAATCTTAGAGAGTTCATC+AGG + Chr3:47708577-47708596 None:intergenic 35.0%
TCAGAATGTGCAGTTTCTAT+CGG - Chr3:47707307-47707326 MsG0380013898.01.T01:intron 35.0%
TCTCTCTCTCTTTCAATTCT+TGG - Chr3:47706499-47706518 MsG0380013898.01.T01:three_prime_UTR 35.0%
TGAATAGCTAACTCTCTAGT+GGG + Chr3:47706811-47706830 None:intergenic 35.0%
TGTAGTAAACTGGTTGCTTA+GGG - Chr3:47709150-47709169 MsG0380013898.01.T01:CDS 35.0%
TGTATTGGATGGAAATGGTA+TGG + Chr3:47708313-47708332 None:intergenic 35.0%
TGTTCATCTTTAATGTCGGA+CGG - Chr3:47707695-47707714 MsG0380013898.01.T01:intron 35.0%
TTAACCTGATATGTGGTGAA+TGG - Chr3:47709663-47709682 MsG0380013898.01.T01:intron 35.0%
TTGAAATAGGAGAGAAAGTG+GGG - Chr3:47708617-47708636 MsG0380013898.01.T01:intron 35.0%
TTGTGAGGTGTATTTGTACA+GGG - Chr3:47709009-47709028 MsG0380013898.01.T01:intron 35.0%
! ACACAAAGCCCTTTTTGATA+TGG - Chr3:47708684-47708703 MsG0380013898.01.T01:intron 35.0%
! ATAGGTTGCCTTTTTGACAT+CGG + Chr3:47707343-47707362 None:intergenic 35.0%
! CACAAAGCCCTTTTTGATAT+GGG - Chr3:47708685-47708704 MsG0380013898.01.T01:intron 35.0%
! CACTACATTTAGCAGGATTT+TGG - Chr3:47708134-47708153 MsG0380013898.01.T01:CDS 35.0%
! CTGATTTGAATCACCAAAAG+TGG - Chr3:47709935-47709954 MsG0380013898.01.T01:CDS 35.0%
! TCTGCAGGTTCTTATGTTTT+CGG - Chr3:47708429-47708448 MsG0380013898.01.T01:intron 35.0%
! TGATTCTCTGAGGATAATGA+AGG - Chr3:47708222-47708241 MsG0380013898.01.T01:intron 35.0%
! TGTTTTCATTGGACTGAACA+GGG - Chr3:47709633-47709652 MsG0380013898.01.T01:intron 35.0%
! TTGTTTTCATTGGACTGAAC+AGG - Chr3:47709632-47709651 MsG0380013898.01.T01:intron 35.0%
!! AAGTTCTAGAGCATCTAGTA+TGG + Chr3:47708725-47708744 None:intergenic 35.0%
!! CAAGAAAGATTAGCCACTTT+TGG + Chr3:47709951-47709970 None:intergenic 35.0%
AAAGTTGCTCTTAAGGAAGC+TGG - Chr3:47709908-47709927 MsG0380013898.01.T01:CDS 40.0%
AATGCTGTTCTCCGTAAGAT+TGG - Chr3:47707265-47707284 MsG0380013898.01.T01:intron 40.0%
ACCTCTTGAATGTTGAGCAA+CGG + Chr3:47706460-47706479 None:intergenic 40.0%
AGAAACTAGACTACGTGGTT+TGG + Chr3:47709384-47709403 None:intergenic 40.0%
AGAGTCCAAGCACATGTAAA+GGG + Chr3:47708872-47708891 None:intergenic 40.0%
ATCAAATTCTGAATCGTGCC+AGG + Chr3:47707391-47707410 None:intergenic 40.0%
ATGCTGTTCTCCGTAAGATT+GGG - Chr3:47707266-47707285 MsG0380013898.01.T01:intron 40.0%
CAAATACTTATCGGTACTCC+TGG - Chr3:47707370-47707389 MsG0380013898.01.T01:intron 40.0%
CAATTCAAACTGTCACTGTC+AGG - Chr3:47708258-47708277 MsG0380013898.01.T01:intron 40.0%
CACTAGAGAGTTAGCTATTC+AGG - Chr3:47706810-47706829 MsG0380013898.01.T01:intron 40.0%
CATACCAAGCACAAAACAAG+CGG + Chr3:47706737-47706756 None:intergenic 40.0%
CTAAATGCTATCCTGGATCA+AGG + Chr3:47709488-47709507 None:intergenic 40.0%
CTGAATAGCTAACTCTCTAG+TGG + Chr3:47706812-47706831 None:intergenic 40.0%
CTGACAGTGACAGTTTGAAT+TGG + Chr3:47708260-47708279 None:intergenic 40.0%
GAAACTAGACTACGTGGTTT+GGG + Chr3:47709383-47709402 None:intergenic 40.0%
GAATAGCTAACTCTCTAGTG+GGG + Chr3:47706810-47706829 None:intergenic 40.0%
GAGAATCATCGGTAAGCTTA+GGG + Chr3:47706662-47706681 None:intergenic 40.0%
GAGGAAATCCGATGTCAAAA+AGG - Chr3:47707332-47707351 MsG0380013898.01.T01:intron 40.0%
GATTCTCAATCCTCCACATA+GGG - Chr3:47706675-47706694 MsG0380013898.01.T01:CDS 40.0%
GCCATATGTCTACAAATGAG+AGG + Chr3:47709430-47709449 None:intergenic 40.0%
GTCAAAAAGGCAACCTATCA+TGG - Chr3:47707345-47707364 MsG0380013898.01.T01:intron 40.0%
TAGAGTCCAAGCACATGTAA+AGG + Chr3:47708873-47708892 None:intergenic 40.0%
TAGCCATCACTACATTTAGC+AGG - Chr3:47708127-47708146 MsG0380013898.01.T01:CDS 40.0%
TGAGAATCATCGGTAAGCTT+AGG + Chr3:47706663-47706682 None:intergenic 40.0%
TGATTCTCAATCCTCCACAT+AGG - Chr3:47706674-47706693 MsG0380013898.01.T01:CDS 40.0%
TGTGCAGTGAATTGTTTGCT+TGG - Chr3:47709119-47709138 MsG0380013898.01.T01:intron 40.0%
TGTGGAGGATTGAGAATCAT+CGG + Chr3:47706673-47706692 None:intergenic 40.0%
! ACCACGTAGTCTAGTTTCTA+AGG - Chr3:47709385-47709404 MsG0380013898.01.T01:intron 40.0%
! CCTGTTGATTATCAAAGCCA+CGG + Chr3:47708822-47708841 None:intergenic 40.0%
! CTGTTGATTATCAAAGCCAC+GGG + Chr3:47708821-47708840 None:intergenic 40.0%
! CTTAGGGCTTGTATTTTGCT+AGG + Chr3:47706646-47706665 None:intergenic 40.0%
! GTCTTTTTGAATTCTGCTCC+AGG - Chr3:47706537-47706556 MsG0380013898.01.T01:three_prime_UTR 40.0%
! GTTTTCATTGGACTGAACAG+GGG - Chr3:47709634-47709653 MsG0380013898.01.T01:intron 40.0%
! TGTATTTGTACAGGGTTGGT+AGG - Chr3:47709017-47709036 MsG0380013898.01.T01:intron 40.0%
! TGTCAGTGTTCGAGTTTCAT+AGG + Chr3:47706979-47706998 None:intergenic 40.0%
!! GTATTTGTACAGGGTTGGTA+GGG - Chr3:47709018-47709037 MsG0380013898.01.T01:intron 40.0%
!!! AAAACCGCTTGTTTTGTGCT+TGG - Chr3:47706730-47706749 MsG0380013898.01.T01:intron 40.0%
AATTCTGCTCCAGGTTACGT+CGG - Chr3:47706546-47706565 MsG0380013898.01.T01:three_prime_UTR 45.0%
ATCAGGACACACCTTATCTG+AGG - Chr3:47706907-47706926 MsG0380013898.01.T01:CDS 45.0%
CAAATGAGAGGTTGGAGACT+TGG + Chr3:47709418-47709437 None:intergenic 45.0%
CATCCCATTCACCACATATC+AGG + Chr3:47709670-47709689 None:intergenic 45.0%
CCGTAAGATTGGGAAGTTCA+CGG - Chr3:47707276-47707295 MsG0380013898.01.T01:intron 45.0%
CCGTGAACTTCCCAATCTTA+CGG + Chr3:47707279-47707298 None:intergenic 45.0%
CCTCTTGAATGTTGAGCAAC+GGG + Chr3:47706459-47706478 None:intergenic 45.0%
CGTAAGATTGGGAAGTTCAC+GGG - Chr3:47707277-47707296 MsG0380013898.01.T01:intron 45.0%
CTCTTGAATGTTGAGCAACG+GGG + Chr3:47706458-47706477 None:intergenic 45.0%
GAAACTACACGCTCGTAACA+TGG + Chr3:47707620-47707639 None:intergenic 45.0%
GAATGTGCAGTTTCTATCGG+CGG - Chr3:47707310-47707329 MsG0380013898.01.T01:intron 45.0%
GACAATCTTCACCTTGATCC+AGG - Chr3:47709474-47709493 MsG0380013898.01.T01:intron 45.0%
GAGGTGTATTTGTACAGGGT+TGG - Chr3:47709013-47709032 MsG0380013898.01.T01:intron 45.0%
GAGTCCAAGCACATGTAAAG+GGG + Chr3:47708871-47708890 None:intergenic 45.0%
GCAATCAAATCCCTATGTGG+AGG + Chr3:47706688-47706707 None:intergenic 45.0%
GCCTTAGAAACTAGACTACG+TGG + Chr3:47709389-47709408 None:intergenic 45.0%
GTAAGATTGGGAAGTTCACG+GGG - Chr3:47707278-47707297 MsG0380013898.01.T01:intron 45.0%
TACACCTCACAATCAAGCTC+AGG + Chr3:47709001-47709020 None:intergenic 45.0%
TACTCGACAGTGAACTTCAG+TGG + Chr3:47708962-47708981 None:intergenic 45.0%
TCACTATGAAGCACAGACAC+CGG - Chr3:47706838-47706857 MsG0380013898.01.T01:intron 45.0%
TGAACCTGAGCTTGATTGTG+AGG - Chr3:47708994-47709013 MsG0380013898.01.T01:intron 45.0%
TGCGCAATCAAATCCCTATG+TGG + Chr3:47706691-47706710 None:intergenic 45.0%
TGTCAGTGTCCATGGTTCAT+AGG + Chr3:47707104-47707123 None:intergenic 45.0%
TTCCACTACCTCTTCTTCAC+CGG - Chr3:47706408-47706427 MsG0380013898.01.T01:three_prime_UTR 45.0%
! AACTGTGTGTTGTTGCAGGA+TGG - Chr3:47708190-47708209 MsG0380013898.01.T01:intron 45.0%
! GAATGGCTTGGATGCAATGA+TGG + Chr3:47708054-47708073 None:intergenic 45.0%
! GCATAACTGTGTGTTGTTGC+AGG - Chr3:47708186-47708205 MsG0380013898.01.T01:intron 45.0%
! TGCTGATCAACTGTTTGCTG+AGG - Chr3:47707462-47707481 MsG0380013898.01.T01:intron 45.0%
!! AGGAGTGTCCGTGCTTTATA+TGG - Chr3:47706927-47706946 MsG0380013898.01.T01:CDS 45.0%
!! CCGTGGCTTTGATAATCAAC+AGG - Chr3:47708819-47708838 MsG0380013898.01.T01:intron 45.0%
!! GAAGAAGAGGTAGTGGAAGA+AGG + Chr3:47706406-47706425 None:intergenic 45.0%
!! TGATTGACTTGTGTGTCTGC+AGG - Chr3:47708414-47708433 MsG0380013898.01.T01:intron 45.0%
!!! TTTTGGCTCCCATGTAACAG+AGG - Chr3:47709718-47709737 MsG0380013898.01.T01:intron 45.0%
AAGCTCAGGTTCACGACCAT+GGG + Chr3:47708987-47709006 None:intergenic 50.0%
CCCGTTGCTCAACATTCAAG+AGG - Chr3:47706456-47706475 MsG0380013898.01.T01:three_prime_UTR 50.0%
CGAGAGAGACAAGATTGTCG+AGG - Chr3:47708747-47708766 MsG0380013898.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAAGAG+TGG + Chr3:47706489-47706508 None:intergenic 50.0%
GATTTGCGTGTCAGTGTCCA+TGG + Chr3:47707112-47707131 None:intergenic 50.0%
GGGCAAATGCAGATAGCTTG+AGG + Chr3:47706790-47706809 None:intergenic 50.0%
TAGAGTCCCTTCAGAAGCTC+CGG + Chr3:47706601-47706620 None:intergenic 50.0%
TCCAAGCACATGTAAAGGGG+AGG + Chr3:47708868-47708887 None:intergenic 50.0%
TTCACTGTCGAGTACACCCA+TGG - Chr3:47708968-47708987 MsG0380013898.01.T01:intron 50.0%
TTGATTGCGCAAGCACCCAT+GGG - Chr3:47706700-47706719 MsG0380013898.01.T01:CDS 50.0%
TTTACTCGCCGGTGAAGAAG+AGG + Chr3:47706419-47706438 None:intergenic 50.0%
TTTGATTGCGCAAGCACCCA+TGG - Chr3:47706699-47706718 MsG0380013898.01.T01:CDS 50.0%
! AGCGGTTTTTCCTGAACCCA+TGG + Chr3:47706719-47706738 None:intergenic 50.0%
! GATAGCTTGAGGAGCATGCA+AGG + Chr3:47706779-47706798 None:intergenic 50.0%
! GCGGTTTTTCCTGAACCCAT+GGG + Chr3:47706718-47706737 None:intergenic 50.0%
AGGGACAGCTCTTCGAAGGT+TGG + Chr3:47706574-47706593 None:intergenic 55.0%
CAAGCTCAGGTTCACGACCA+TGG + Chr3:47708988-47709007 None:intergenic 55.0%
GCACGGACACTCCTCAGATA+AGG + Chr3:47706921-47706940 None:intergenic 55.0%
GCCTCCCCTTTACATGTGCT+TGG - Chr3:47708864-47708883 MsG0380013898.01.T01:intron 55.0%
GTTGAGCAACGGGGTTTCTG+CGG + Chr3:47706449-47706468 None:intergenic 55.0%
TCGTCTGATGTTCTTGCCCG+TGG - Chr3:47708802-47708821 MsG0380013898.01.T01:intron 55.0%
TGTCAGTGTCCGTGTGTGTC+CGG + Chr3:47706860-47706879 None:intergenic 55.0%
TGTGCAGTTTCTATCGGCGG+AGG - Chr3:47707313-47707332 MsG0380013898.01.T01:intron 55.0%
! GCTTCTGAAGGGACTCTACG+TGG - Chr3:47706603-47706622 MsG0380013898.01.T01:three_prime_UTR 55.0%
! GCTTGAGGAGCATGCAAGGT+TGG + Chr3:47706775-47706794 None:intergenic 55.0%
!! TGTACAGGGTTGGTAGGGCT+GGG - Chr3:47709023-47709042 MsG0380013898.01.T01:intron 55.0%
!! TTGTACAGGGTTGGTAGGGC+TGG - Chr3:47709022-47709041 MsG0380013898.01.T01:intron 55.0%
CGAGAGGGACAGCTCTTCGA+AGG + Chr3:47706578-47706597 None:intergenic 60.0%
CGCCGGTGAAGAAGAGGTAG+TGG + Chr3:47706413-47706432 None:intergenic 60.0%
CTCTCGCCGGAGCTTCTGAA+GGG - Chr3:47706592-47706611 MsG0380013898.01.T01:three_prime_UTR 60.0%
CTTCAGAAGCTCCGGCGAGA+GGG + Chr3:47706593-47706612 None:intergenic 60.0%
GCACAGACACCGGACACACA+CGG - Chr3:47706848-47706867 MsG0380013898.01.T01:intron 60.0%
! GCTGGGCGATTTGGACGCAA+GGG - Chr3:47709040-47709059 MsG0380013898.01.T01:intron 60.0%
! GTTGGTAGGGCTGGGCGATT+TGG - Chr3:47709031-47709050 MsG0380013898.01.T01:intron 60.0%
CCTCTCGCCGGAGCTTCTGA+AGG - Chr3:47706591-47706610 MsG0380013898.01.T01:three_prime_UTR 65.0%
CCTTCAGAAGCTCCGGCGAG+AGG + Chr3:47706594-47706613 None:intergenic 65.0%
CGAAGAGCTGTCCCTCTCGC+CGG - Chr3:47706579-47706598 MsG0380013898.01.T01:three_prime_UTR 65.0%
GAGCAACGGGGTTTCTGCGG+CGG + Chr3:47706446-47706465 None:intergenic 65.0%
GCGCAAGCACCCATGGGTTC+AGG - Chr3:47706706-47706725 MsG0380013898.01.T01:CDS 65.0%
! GCGGCGGAGCATTTACTCGC+CGG + Chr3:47706430-47706449 None:intergenic 65.0%
! GGCTGGGCGATTTGGACGCA+AGG - Chr3:47709039-47709058 MsG0380013898.01.T01:intron 65.0%
!! AGGTTGGCGCCGACGTAACC+TGG + Chr3:47706558-47706577 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 47706383 47710234 47706383 ID=MsG0380013898.01;Name=MsG0380013898.01
Chr3 mRNA 47706383 47710234 47706383 ID=MsG0380013898.01.T01;Parent=MsG0380013898.01;Name=MsG0380013898.01.T01;_AED=0.48;_eAED=0.48;_QI=11|1|1|1|1|1|8|291|444
Chr3 exon 47706383 47706736 47706383 ID=MsG0380013898.01.T01:exon:26457;Parent=MsG0380013898.01.T01
Chr3 exon 47706878 47706963 47706878 ID=MsG0380013898.01.T01:exon:26456;Parent=MsG0380013898.01.T01
Chr3 exon 47707556 47707685 47707556 ID=MsG0380013898.01.T01:exon:26455;Parent=MsG0380013898.01.T01
Chr3 exon 47707777 47708181 47707777 ID=MsG0380013898.01.T01:exon:26454;Parent=MsG0380013898.01.T01
Chr3 exon 47708338 47708409 47708338 ID=MsG0380013898.01.T01:exon:26453;Parent=MsG0380013898.01.T01
Chr3 exon 47709134 47709355 47709134 ID=MsG0380013898.01.T01:exon:26452;Parent=MsG0380013898.01.T01
Chr3 exon 47709786 47710058 47709786 ID=MsG0380013898.01.T01:exon:26451;Parent=MsG0380013898.01.T01
Chr3 exon 47710140 47710234 47710140 ID=MsG0380013898.01.T01:exon:26450;Parent=MsG0380013898.01.T01
Chr3 five_prime_UTR 47710224 47710234 47710224 ID=MsG0380013898.01.T01:five_prime_utr;Parent=MsG0380013898.01.T01
Chr3 CDS 47710140 47710223 47710140 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47709786 47710058 47709786 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47709134 47709355 47709134 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47708338 47708409 47708338 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47707777 47708181 47707777 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47707556 47707685 47707556 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47706878 47706963 47706878 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 CDS 47706674 47706736 47706674 ID=MsG0380013898.01.T01:cds;Parent=MsG0380013898.01.T01
Chr3 three_prime_UTR 47706383 47706673 47706383 ID=MsG0380013898.01.T01:three_prime_utr;Parent=MsG0380013898.01.T01
Gene Sequence

>MsG0380013898.01.T01

ATGGCAGAACCTTCTTCCACTACCTCTTCTTCACCGGCGAGTAAATGCTCCGCCGCAGAAACCCCGTTGCTCAACATTCAAGAGGTTACGTCGGCGCCAACCTTCGAAGAGCTGTCCCTCTCGCCGGAGCTTCTGAAGGGACTCTACGTGGAGATGAGATTTGTTTTACCTAGCAAAATACAAGCCCTAAGCTTACCGATGATTCTCAATCCTCCACATAGGGATTTGATTGCGCAAGCACCCATGGGTTCAGGAAAAACCGCTTGTTTTGTGCTTGGTATGCTTAGTCGTGTTGATCCAACCTTGCATGCTCCTCAAGCTATCTGCATTTGCCCCACTAGAGAGTTAGCTATTCAGAACAATGCTGTTCTCCGTAAGATTGGGAAGTTCACGGGGATTAGCTCAGAATGTGCAGTTTCTATCGGCGGAGGAAATCCGATGTCAAAAAGGCAACCTATCATGGCTCAAATACTTATCGGTACTCCTGGCACGATTCAGAATTTGATTACTTTCAAGAAACTTGCTTTGACAAAATTGAAGATTCTCGTTTTTGATGATGCTGATCAACTGTTTGCTGAGGATGGATATAAATCTGATTCTCTGAGGATAATGAAGGAATTAGAACATTCCAATTCAAACTGTCACTGTCAGGTTCTTATGTTTTCGGCTACATTTAATGACACTGTCAAGAATCTTATCACAAAGATTGTTGACAAGGAGCATAATGAACTTTTTGTGAAGAAAGAGGATCTATCTTTAGCTGCAGTGAAGCAGTACAAAGTGTGTGTTCCTGATGAACTCTCTAAGATTGAAGTGATTAGAAACTATATACTTGAAATAGGAGAGAAAGTGGGGCAAACTATGATATTTGTGCGCACCATAAAAAGTGCAAAGATGTTACACAAAGCCCTTTTTGATATGGGATATAAAGTTAGTTCCATACTAGATGCTCTAGAACTTTACGAGAGAGACAAGATTGTCGAGGAGTTTAAAGATGGTTTGACTCAGGTTCTTATATCGTCTGATGTTCTTGCCCGTGGCTTTGATAATCAACAGGTTAATTTGATTATCAACTACGATCTTCCACTGAAGTTCACTGTCGAGTACACCCATGGTCGTGAACCTGAGCTTGATTGTGAGGTGTATTTGTACAGGGTTGGTAGGGCTGGGCGATTTGGACGCAAGGGGGCTGTATTTAACCTGATATGTGGTGAATGGGATGAAAAGCTCATGTCGAAGATTGAAAACGATTTTGGCTCCCATGTAACAGAGGTGCCAGAAAGAAGTGTTGAAGACTATAAAGTTGCTCTTAAGGAAGCTGGTTTACTGATTTGA
Protein sequence

>MsG0380013898.01.T01

MAEPSSTTSSSPASKCSAAETPLLNIQEVTSAPTFEELSLSPELLKGLYVEMRFVLPSKIQALSLPMILNPPHRDLIAQAPMGSGKTACFVLGMLSRVDPTLHAPQAICICPTRELAIQNNAVLRKIGKFTGISSECAVSIGGGNPMSKRQPIMAQILIGTPGTIQNLITFKKLALTKLKILVFDDADQLFAEDGYKSDSLRIMKELEHSNSNCHCQVLMFSATFNDTVKNLITKIVDKEHNELFVKKEDLSLAAVKQYKVCVPDELSKIEVIRNYILEIGEKVGQTMIFVRTIKSAKMLHKALFDMGYKVSSILDALELYERDKIVEEFKDGLTQVLISSDVLARGFDNQQVNLIINYDLPLKFTVEYTHGREPELDCEVYLYRVGRAGRFGRKGAVFNLICGEWDEKLMSKIENDFGSHVTEVPERSVEDYKVALKEAGLLI*