AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014169.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014169.01.T01 MTR_3g052120 95.604 91 4 0 28 118 1 91 5.58e-55 181
MsG0380014169.01.T01 MTR_3g063160 78.351 97 21 0 28 124 1 97 8.20e-46 151
MsG0380014169.01.T01 MTR_3g063170 75.258 97 24 0 28 124 1 97 1.09e-41 145
MsG0380014169.01.T01 MTR_3g063140 75.258 97 24 0 28 124 1 97 1.27e-41 145
MsG0380014169.01.T01 MTR_3g465090 73.196 97 26 0 28 124 1 97 3.47e-39 139
MsG0380014169.01.T01 MTR_6g064980 71.134 97 28 0 28 124 1 97 5.34e-39 138
MsG0380014169.01.T01 MTR_2g010960 61.386 101 35 2 28 124 1 101 8.79e-31 116
MsG0380014169.01.T01 MTR_3g063120 80.556 72 13 1 54 124 2 73 7.57e-30 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 25 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTTGGTTATATTCTCTT+TGG 0.317014 3:-50808904 MsG0380014169.01.T01:CDS
TTCTGATGAACTGCAGCTTC+TGG 0.337894 3:-50811802 MsG0380014169.01.T01:intron
ACCAACCTGCATTGACATAA+TGG 0.346642 3:+50808918 None:intergenic
GTGCAACTTCATAAAGTTCA+TGG 0.376591 3:+50808969 None:intergenic
AGTGTTCAATGCCAAGCCTT+TGG 0.393705 3:+50809071 None:intergenic
TGGCTACTAACGAAATCAAT+TGG 0.412017 3:+50808989 None:intergenic
CATCCTTTAAAATGAATAAG+TGG 0.471903 3:+50808806 None:intergenic
ATTGACATCATCCAAAGGCT+TGG 0.485610 3:-50809082 MsG0380014169.01.T01:CDS
GCAGATATGTTGCCGTATGT+AGG 0.488862 3:-50808854 MsG0380014169.01.T01:CDS
TTGGTTATATTCTCTTTGGT+CGG 0.495660 3:-50808900 MsG0380014169.01.T01:CDS
CTCCGTGAGCATAGTTAAGT+TGG 0.503346 3:-50808876 MsG0380014169.01.T01:CDS
CAGATATGTTGCCGTATGTA+GGG 0.503860 3:-50808853 MsG0380014169.01.T01:CDS
AAGAGCCACTTTGATCTCCT+CGG 0.504444 3:+50809042 None:intergenic
ATCAAATGAAAATTCTCAGT+TGG 0.512307 3:+50809103 None:intergenic
GGCCTCCTTGTCTGAGCAAG+CGG 0.550833 3:+50808939 None:intergenic
GCATTCCGCTTGCTCAGACA+AGG 0.560215 3:-50808944 MsG0380014169.01.T01:CDS
GGAGGCCATTATGTCAATGC+AGG 0.572931 3:-50808923 MsG0380014169.01.T01:CDS
ATCCTTTAAAATGAATAAGT+GGG 0.575425 3:+50808807 None:intergenic
GCCATTATGTCAATGCAGGT+TGG 0.576149 3:-50808919 MsG0380014169.01.T01:CDS
ATTTGATTGACATCATCCAA+AGG 0.587022 3:-50809087 MsG0380014169.01.T01:CDS
TGCCAACTTAACTATGCTCA+CGG 0.587419 3:+50808874 None:intergenic
TGAACTCTGAGCCCTACATA+CGG 0.618913 3:+50808842 None:intergenic
CATTGAACACTACTTTGCCG+AGG 0.665299 3:-50809059 MsG0380014169.01.T01:CDS
TTCCGCTTGCTCAGACAAGG+AGG 0.669099 3:-50808941 MsG0380014169.01.T01:CDS
CTTTGCCGAGGAGATCAAAG+TGG 0.670162 3:-50809047 MsG0380014169.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAATAATATAGAGT+CGG + Chr3:50809356-50809375 None:intergenic 10.0%
!! TTAATTAAAATAGAAAATAG+GGG - Chr3:50809528-50809547 MsG0380014169.01.T01:intron 10.0%
!!! AATATAAGTTTTAAATAAGT+GGG + Chr3:50809326-50809345 None:intergenic 10.0%
!!! AGTTTAATCTAATTTTTTTT+TGG - Chr3:50810189-50810208 MsG0380014169.01.T01:intron 10.0%
!!! TTGTTATATATTTAGAATTT+TGG - Chr3:50810103-50810122 MsG0380014169.01.T01:intron 10.0%
!! AAATAAAATAATATAGAGTC+GGG + Chr3:50809355-50809374 None:intergenic 15.0%
!! AGTTTGAATAAAATGAAAAA+AGG + Chr3:50809384-50809403 None:intergenic 15.0%
!! ATAAAAGTGAAAGAAAAATT+TGG - Chr3:50810053-50810072 MsG0380014169.01.T01:intron 15.0%
!! CAAAAATTTACATCTTAAAT+AGG + Chr3:50809067-50809086 None:intergenic 15.0%
!! TTAATTCAATGAAGTTTAAT+AGG + Chr3:50809512-50809531 None:intergenic 15.0%
!!! ATATAAGTTTTAAATAAGTG+GGG + Chr3:50809325-50809344 None:intergenic 15.0%
!!! CTTAAAGAAAAGTATTTTTA+TGG + Chr3:50809678-50809697 None:intergenic 15.0%
!!! GAATATAAGTTTTAAATAAG+TGG + Chr3:50809327-50809346 None:intergenic 15.0%
!! AATAAAATAATATAGAGTCG+GGG + Chr3:50809354-50809373 None:intergenic 20.0%
!! ATTAAAAATGATGATATGTG+AGG + Chr3:50811256-50811275 None:intergenic 20.0%
!! TATTTATTGAACTCGATAAT+AGG - Chr3:50809994-50810013 MsG0380014169.01.T01:intron 20.0%
!! TTTATTTCATTCTTTCTTCT+TGG + Chr3:50810312-50810331 None:intergenic 20.0%
!!! AAGTTTTTCTAAACTCAAAT+TGG + Chr3:50811165-50811184 None:intergenic 20.0%
!!! AATAGAATTATGATGATGAA+TGG + Chr3:50809427-50809446 None:intergenic 20.0%
!!! AGTTTAATCCATTTTATTGT+GGG - Chr3:50810218-50810237 MsG0380014169.01.T01:intron 20.0%
!!! ATCCTTTAAAATGAATAAGT+GGG + Chr3:50811853-50811872 None:intergenic 20.0%
!!! ATTTTTTCGTATCACTTAAT+TGG + Chr3:50810437-50810456 None:intergenic 20.0%
!!! TATAAGTTTTAAATAAGTGG+GGG + Chr3:50809324-50809343 None:intergenic 20.0%
! ACATTAAGTTTGATATTGGA+TGG + Chr3:50810788-50810807 None:intergenic 25.0%
! AGGATCAAACTAAAAATCTT+AGG + Chr3:50809854-50809873 None:intergenic 25.0%
! ATAAACGTTATACACACAAA+AGG - Chr3:50810327-50810346 MsG0380014169.01.T01:intron 25.0%
! ATCAAATGAAAATTCTCAGT+TGG + Chr3:50811557-50811576 None:intergenic 25.0%
! ATGTACTATGTTTAATCAAG+TGG - Chr3:50810278-50810297 MsG0380014169.01.T01:intron 25.0%
! CGAAAAAATGAAAACAATAC+CGG - Chr3:50810448-50810467 MsG0380014169.01.T01:intron 25.0%
! CGGAATATAAATAGAAACAT+GGG + Chr3:50809244-50809263 None:intergenic 25.0%
! GATTACAACAAGTTATTGAT+CGG + Chr3:50809264-50809283 None:intergenic 25.0%
! TAAACGTTATACACACAAAA+GGG - Chr3:50810328-50810347 MsG0380014169.01.T01:intron 25.0%
! TACACTTTGTATAGATTTAC+TGG + Chr3:50810407-50810426 None:intergenic 25.0%
! TATATCTTAAATAATGCACG+TGG + Chr3:50811228-50811247 None:intergenic 25.0%
! TCAAAACTCTCAAAGTTTAT+TGG - Chr3:50809155-50809174 MsG0380014169.01.T01:CDS 25.0%
! TCGGAATATAAATAGAAACA+TGG + Chr3:50809245-50809264 None:intergenic 25.0%
! TTGAAATCTACAGATTTCAA+TGG + Chr3:50810854-50810873 None:intergenic 25.0%
! TTTACATCTTAAATAGGTTC+TGG + Chr3:50809061-50809080 None:intergenic 25.0%
! TTTATGGCATAAATGAAGAT+CGG + Chr3:50809662-50809681 None:intergenic 25.0%
!! AGTTTTCAAAAGTTGTTCAA+TGG + Chr3:50808821-50808840 None:intergenic 25.0%
!! GAGTTTAATCCATTTTATTG+TGG - Chr3:50810217-50810236 MsG0380014169.01.T01:intron 25.0%
!! TTCCCACTTATTCATTTTAA+AGG - Chr3:50811848-50811867 MsG0380014169.01.T01:CDS 25.0%
!!! CACTTATTCATTTTAAAGGA+TGG - Chr3:50811852-50811871 MsG0380014169.01.T01:CDS 25.0%
!!! CATCCTTTAAAATGAATAAG+TGG + Chr3:50811854-50811873 None:intergenic 25.0%
!!! TTAATTTCAGTTTTCAAGCA+TGG - Chr3:50811327-50811346 MsG0380014169.01.T01:intron 25.0%
!!! TTCTAAACTCAAATTGGTTT+TGG + Chr3:50811159-50811178 None:intergenic 25.0%
AAAATGAAAACAATACCGGT+TGG - Chr3:50810452-50810471 MsG0380014169.01.T01:intron 30.0%
ACAAAACACCCACAATAAAA+TGG + Chr3:50810229-50810248 None:intergenic 30.0%
ACGTTTGTTTACCAAAAACA+CGG - Chr3:50809896-50809915 MsG0380014169.01.T01:intron 30.0%
AGTAAAAGAATAGTGAGTAG+AGG + Chr3:50809294-50809313 None:intergenic 30.0%
ATAAAACCAATTAGTGGCAT+CGG - Chr3:50810815-50810834 MsG0380014169.01.T01:intron 30.0%
ATGAATATTCGTTCGTGTTT+GGG + Chr3:50811018-50811037 None:intergenic 30.0%
ATTTGATTGACATCATCCAA+AGG - Chr3:50811570-50811589 MsG0380014169.01.T01:intron 30.0%
CAATATCAAACTTAATGTCG+AGG - Chr3:50810790-50810809 MsG0380014169.01.T01:intron 30.0%
CTCGACATTAAGTTTGATAT+TGG + Chr3:50810792-50810811 None:intergenic 30.0%
GAGCTAAGAAATCAACAAAA+AGG + Chr3:50809026-50809045 None:intergenic 30.0%
GAGGATATAAAACCAATTAG+TGG - Chr3:50810809-50810828 MsG0380014169.01.T01:intron 30.0%
TAAGTTTGATATTGGATGGT+TGG + Chr3:50810784-50810803 None:intergenic 30.0%
TTGGTTATATTCTCTTTGGT+CGG - Chr3:50811757-50811776 MsG0380014169.01.T01:intron 30.0%
! AGAAAAACTGACTTTACTCA+AGG + Chr3:50811297-50811316 None:intergenic 30.0%
! TCAATCTGTTCTACATTTTC+AGG - Chr3:50811463-50811482 MsG0380014169.01.T01:intron 30.0%
! TTTTTCTCAACAACCAAGAT+GGG + Chr3:50810363-50810382 None:intergenic 30.0%
!! AATAGGGGTGTTACAAAATA+TGG - Chr3:50809543-50809562 MsG0380014169.01.T01:intron 30.0%
!! ATAGGGGTGTTACAAAATAT+GGG - Chr3:50809544-50809563 MsG0380014169.01.T01:intron 30.0%
!! GTTTTAGATTAATTGCTTGC+AGG + Chr3:50809874-50809893 None:intergenic 30.0%
!! TGAGAGTTTTGATGATAACA+AGG + Chr3:50809147-50809166 None:intergenic 30.0%
!! TTATTCTTGTTGTTCTTGCA+AGG + Chr3:50810538-50810557 None:intergenic 30.0%
!!! AATTGGTTTTGGTGATCAAT+TGG + Chr3:50811148-50811167 None:intergenic 30.0%
!!! TTTTTTCTCAACAACCAAGA+TGG + Chr3:50810364-50810383 None:intergenic 30.0%
ACAAGTGGTAACAAGTATGA+TGG - Chr3:50810747-50810766 MsG0380014169.01.T01:intron 35.0%
ACGTATCAAACAGATCCAAA+TGG - Chr3:50810981-50811000 MsG0380014169.01.T01:intron 35.0%
AGCTATATATCTTCACAGCA+TGG - Chr3:50809935-50809954 MsG0380014169.01.T01:intron 35.0%
ATCAAACATGTAGACTGATG+AGG - Chr3:50810585-50810604 MsG0380014169.01.T01:intron 35.0%
ATTATTAGAACACCCACAAG+TGG - Chr3:50810732-50810751 MsG0380014169.01.T01:intron 35.0%
CAAACACGAACGAATATTCA+TGG - Chr3:50811017-50811036 MsG0380014169.01.T01:intron 35.0%
CATGAATATTCGTTCGTGTT+TGG + Chr3:50811019-50811038 None:intergenic 35.0%
GATCTGTTTGATACGTTATG+TGG + Chr3:50810977-50810996 None:intergenic 35.0%
GTGCAACTTCATAAAGTTCA+TGG + Chr3:50811691-50811710 None:intergenic 35.0%
TCAAACATGTAGACTGATGA+GGG - Chr3:50810586-50810605 MsG0380014169.01.T01:intron 35.0%
TCAGTCTACATGTTTGATGT+TGG + Chr3:50810583-50810602 None:intergenic 35.0%
TGGCTACTAACGAAATCAAT+TGG + Chr3:50811671-50811690 None:intergenic 35.0%
TGGTTGTTGAGAAAAAACCA+GGG - Chr3:50810367-50810386 MsG0380014169.01.T01:intron 35.0%
TTGGTTGTTGAGAAAAAACC+AGG - Chr3:50810366-50810385 MsG0380014169.01.T01:intron 35.0%
! AACCTTTTCAACTATGTCGA+AGG - Chr3:50809740-50809759 MsG0380014169.01.T01:intron 35.0%
! ACACTGTTTATCCGTGTTTT+TGG + Chr3:50809910-50809929 None:intergenic 35.0%
! ACTCTTTTCTCAACATGACT+TGG + Chr3:50809609-50809628 None:intergenic 35.0%
! ATCATACTTGTTACCACTTG+TGG + Chr3:50810748-50810767 None:intergenic 35.0%
! GGGTTTGTGTTTCTGTTTAT+TGG + Chr3:50810901-50810920 None:intergenic 35.0%
! TCATACTTGTTACCACTTGT+GGG + Chr3:50810747-50810766 None:intergenic 35.0%
!! CAGGTTGGTTATATTCTCTT+TGG - Chr3:50811753-50811772 MsG0380014169.01.T01:intron 35.0%
!! GATTATTTCTGTGTTGACAG+CGG + Chr3:50810500-50810519 None:intergenic 35.0%
!! GTTTTGGTGATCAATTGGTT+TGG + Chr3:50811143-50811162 None:intergenic 35.0%
!!! AAGTTTTAAATAAGTGGGGG+TGG + Chr3:50809321-50809340 None:intergenic 35.0%
ATTGACATCATCCAAAGGCT+TGG - Chr3:50811575-50811594 MsG0380014169.01.T01:intron 40.0%
CAGATATGTTGCCGTATGTA+GGG - Chr3:50811804-50811823 MsG0380014169.01.T01:CDS 40.0%
CGTTATACACACAAAAGGGA+TGG - Chr3:50810332-50810351 MsG0380014169.01.T01:intron 40.0%
CTCCTTCGACATAGTTGAAA+AGG + Chr3:50809745-50809764 None:intergenic 40.0%
CTTGGATACTTTGAGCGTAA+AGG + Chr3:50809591-50809610 None:intergenic 40.0%
GACCAACACGGATATTAAAG+TGG - Chr3:50810635-50810654 MsG0380014169.01.T01:intron 40.0%
GAGGCAGGATATGATATTGT+TGG + Chr3:50809196-50809215 None:intergenic 40.0%
GGTTGTTGAGAAAAAACCAG+GGG - Chr3:50810368-50810387 MsG0380014169.01.T01:intron 40.0%
TGCCAACTTAACTATGCTCA+CGG + Chr3:50811786-50811805 None:intergenic 40.0%
TGGATTATGTTTATGTCCCC+TGG + Chr3:50810387-50810406 None:intergenic 40.0%
TGGGTCTTTCTCAATCCATT+TGG + Chr3:50810999-50811018 None:intergenic 40.0%
TTCAAAACAGCCTGTTAGTC+AGG - Chr3:50810610-50810629 MsG0380014169.01.T01:intron 40.0%
TTGTTCTTGCAAGGAGTTGT+TGG + Chr3:50810529-50810548 None:intergenic 40.0%
! ACCAACCTGCATTGACATAA+TGG + Chr3:50811742-50811761 None:intergenic 40.0%
! GTGATTTTCAGCTTCTGATG+AGG - Chr3:50808877-50808896 MsG0380014169.01.T01:CDS 40.0%
! TTTTAAATAAGTGGGGGTGG+AGG + Chr3:50809318-50809337 None:intergenic 40.0%
!! ATCGTTGTCCAGATTTGTTG+AGG + Chr3:50810703-50810722 None:intergenic 40.0%
!! ATTTGGTGTCTGGTTGGTTA+TGG + Chr3:50811045-50811064 None:intergenic 40.0%
!! TGCCACTTTAATATCCGTGT+TGG + Chr3:50810640-50810659 None:intergenic 40.0%
ACCTATTCAGTCCAGACTGT+CGG - Chr3:50810923-50810942 MsG0380014169.01.T01:intron 45.0%
AGAAACATGGGCTCGTTTGA+TGG + Chr3:50809232-50809251 None:intergenic 45.0%
AGTCTGGACTGAATAGGTAC+GGG + Chr3:50810921-50810940 None:intergenic 45.0%
AGTGTTCAATGCCAAGCCTT+TGG + Chr3:50811589-50811608 None:intergenic 45.0%
CACGGATATTAAAGTGGCAG+CGG - Chr3:50810641-50810660 MsG0380014169.01.T01:intron 45.0%
CAGTCTGGACTGAATAGGTA+CGG + Chr3:50810922-50810941 None:intergenic 45.0%
CATTGAACACTACTTTGCCG+AGG - Chr3:50811598-50811617 MsG0380014169.01.T01:intron 45.0%
CTCCGTGAGCATAGTTAAGT+TGG - Chr3:50811781-50811800 MsG0380014169.01.T01:intron 45.0%
CTCGATAATAGGCACATTCG+TGG - Chr3:50810005-50810024 MsG0380014169.01.T01:intron 45.0%
GCAGATATGTTGCCGTATGT+AGG - Chr3:50811803-50811822 MsG0380014169.01.T01:CDS 45.0%
GCCATTATGTCAATGCAGGT+TGG - Chr3:50811738-50811757 MsG0380014169.01.T01:intron 45.0%
GTTAGTCAGGAAGACCAACA+CGG - Chr3:50810623-50810642 MsG0380014169.01.T01:intron 45.0%
TGAACTCTGAGCCCTACATA+CGG + Chr3:50811818-50811837 None:intergenic 45.0%
TGATGGTCAGGATAGGATAG+AGG + Chr3:50809215-50809234 None:intergenic 45.0%
TTCCACCGAAATCGATCACA+CGG + Chr3:50811120-50811139 None:intergenic 45.0%
TTCTGATGAACTGCAGCTTC+TGG - Chr3:50808855-50808874 MsG0380014169.01.T01:CDS 45.0%
! AAGAGCCACTTTGATCTCCT+CGG + Chr3:50811618-50811637 None:intergenic 45.0%
! TCGTTGCTGTAGGGTTGATT+TGG + Chr3:50811062-50811081 None:intergenic 45.0%
! TCTGATGACGTCATCACTTC+AGG - Chr3:50808937-50808956 MsG0380014169.01.T01:CDS 45.0%
!! GTGGTGTTGTTTGAATCCGT+CGG + Chr3:50810958-50810977 None:intergenic 45.0%
!! TGCAAGGAGTTGTTGGTTCT+TGG + Chr3:50810522-50810541 None:intergenic 45.0%
!! TGGTGTTGTTTGAATCCGTC+GGG + Chr3:50810957-50810976 None:intergenic 45.0%
!! TGTAGGGTTGATTTGGTGTC+TGG + Chr3:50811055-50811074 None:intergenic 45.0%
!! TGTTGGTCTTCCTGACTAAC+AGG + Chr3:50810623-50810642 None:intergenic 45.0%
!! TTCAGGAGCACTTTGTCTTC+AGG - Chr3:50808954-50808973 MsG0380014169.01.T01:CDS 45.0%
!!! TCAGGAGCACTTTTGACTTC+AGG - Chr3:50808972-50808991 MsG0380014169.01.T01:CDS 45.0%
!! AATTAATTAAAATAGAAAAT+AGG - Chr3:50809526-50809545 MsG0380014169.01.T01:intron 5.0%
!! ATTAATTAAAATAGAAAATA+GGG - Chr3:50809527-50809546 MsG0380014169.01.T01:intron 5.0%
!!! TATTTATTTTTTTTTTTTGA+GGG - Chr3:50811364-50811383 MsG0380014169.01.T01:intron 5.0%
!!! TTATTTATTTTTTTTTTTTG+AGG - Chr3:50811363-50811382 MsG0380014169.01.T01:intron 5.0%
ACCGCACTTTAGACACCAAC+CGG + Chr3:50810470-50810489 None:intergenic 50.0%
ATATTAAAGTGGCAGCGGCG+CGG - Chr3:50810646-50810665 MsG0380014169.01.T01:intron 50.0%
CAACCCATGTCGTTGCTGTA+GGG + Chr3:50811071-50811090 None:intergenic 50.0%
CAACCCTACAGCAACGACAT+GGG - Chr3:50811065-50811084 MsG0380014169.01.T01:intron 50.0%
CCTGCAGACCTCAACAAATC+TGG - Chr3:50810692-50810711 MsG0380014169.01.T01:intron 50.0%
CTTTGCCGAGGAGATCAAAG+TGG - Chr3:50811610-50811629 MsG0380014169.01.T01:intron 50.0%
GGAGGCCATTATGTCAATGC+AGG - Chr3:50811734-50811753 MsG0380014169.01.T01:intron 50.0%
TCAACCCATGTCGTTGCTGT+AGG + Chr3:50811072-50811091 None:intergenic 50.0%
TCAACCCTACAGCAACGACA+TGG - Chr3:50811064-50811083 MsG0380014169.01.T01:intron 50.0%
TCCGACAGTCTGGACTGAAT+AGG + Chr3:50810927-50810946 None:intergenic 50.0%
! ACCGGTTGGTGTCTAAAGTG+CGG - Chr3:50810466-50810485 MsG0380014169.01.T01:intron 50.0%
! GCTCGTTTGATGGTCAGGAT+AGG + Chr3:50809222-50809241 None:intergenic 50.0%
!! ACCAATTAGTGGCATCGGTG+CGG - Chr3:50810820-50810839 MsG0380014169.01.T01:intron 50.0%
!! CCAGATTTGTTGAGGTCTGC+AGG + Chr3:50810695-50810714 None:intergenic 50.0%
!! GGGTTGATTTGGTGTCTGGT+TGG + Chr3:50811051-50811070 None:intergenic 50.0%
!! GGTGTTGTTTGAATCCGTCG+GGG + Chr3:50810956-50810975 None:intergenic 50.0%
AGGGATGGCTAGACCCATCT+TGG - Chr3:50810347-50810366 MsG0380014169.01.T01:intron 55.0%
CACCGAAATCGATCACACGG+CGG + Chr3:50811117-50811136 None:intergenic 55.0%
GCATTCCGCTTGCTCAGACA+AGG - Chr3:50811713-50811732 MsG0380014169.01.T01:intron 55.0%
GGTCAGGATAGGATAGAGGC+AGG + Chr3:50809211-50809230 None:intergenic 55.0%
TTCCGCTTGCTCAGACAAGG+AGG - Chr3:50811716-50811735 MsG0380014169.01.T01:intron 55.0%
! CATGGGCTCGTTTGATGGTC+AGG + Chr3:50809227-50809246 None:intergenic 55.0%
! TCCGCACCGATGCCACTAAT+TGG + Chr3:50810824-50810843 None:intergenic 55.0%
CGAAATCGATCACACGGCGG+CGG + Chr3:50811114-50811133 None:intergenic 60.0%
CTGTCGGAGAACAACCCCGA+CGG - Chr3:50810939-50810958 MsG0380014169.01.T01:intron 60.0%
GGCCTCCTTGTCTGAGCAAG+CGG + Chr3:50811721-50811740 None:intergenic 60.0%
GGGGTTGTTCTCCGACAGTC+TGG + Chr3:50810937-50810956 None:intergenic 60.0%
! CGCCGCCGTGTGATCGATTT+CGG - Chr3:50811112-50811131 MsG0380014169.01.T01:intron 60.0%
! CGCCGTGTGATCGATTTCGG+TGG - Chr3:50811115-50811134 MsG0380014169.01.T01:intron 60.0%
GGCGGCTAGGGTGAGCTTCT+GGG + Chr3:50811096-50811115 None:intergenic 65.0%
TTAAAGTGGCAGCGGCGCGG+AGG - Chr3:50810649-50810668 MsG0380014169.01.T01:intron 65.0%
CGATCACACGGCGGCGGCTA+GGG + Chr3:50811108-50811127 None:intergenic 70.0%
CGGCGGCTAGGGTGAGCTTC+TGG + Chr3:50811097-50811116 None:intergenic 70.0%
TCGATCACACGGCGGCGGCT+AGG + Chr3:50811109-50811128 None:intergenic 70.0%
AAGTGGCAGCGGCGCGGAGG+AGG - Chr3:50810652-50810671 MsG0380014169.01.T01:intron 75.0%
AGTGGCAGCGGCGCGGAGGA+GGG - Chr3:50810653-50810672 MsG0380014169.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 50808793 50811886 50808793 ID=MsG0380014169.01;Name=MsG0380014169.01
Chr3 mRNA 50808793 50811886 50808793 ID=MsG0380014169.01.T01;Parent=MsG0380014169.01;Name=MsG0380014169.01.T01;_AED=0.55;_eAED=0.67;_QI=0|0|0|0.5|1|1|2|0|161
Chr3 exon 50811803 50811886 50811803 ID=MsG0380014169.01.T01:exon:9798;Parent=MsG0380014169.01.T01
Chr3 exon 50808793 50809194 50808793 ID=MsG0380014169.01.T01:exon:9797;Parent=MsG0380014169.01.T01
Chr3 CDS 50811803 50811886 50811803 ID=MsG0380014169.01.T01:cds;Parent=MsG0380014169.01.T01
Chr3 CDS 50808793 50809194 50808793 ID=MsG0380014169.01.T01:cds;Parent=MsG0380014169.01.T01
Gene Sequence

>MsG0380014169.01.T01

ATGCAATGCTTAGACGAATTCAAATCCATTGAACAACTTTTGAAAACTTTAAGTCTTGCATCTTCTGATGAACTGCAGCTTCTGGATGCTATTTATGTCAAGCAAGCTTTGTTGTGTAAACAAGTTCACAAGAAACTTGTTACTAGTGAAGATCCAACTGAGAATTTTCATTTGATTGACATCATCCAAAGGCTTGGCATTGAACACTACTTTGCCGAGGAGATCAAAGTGGCTCTTGAAAAACAATTTTTGATATTGAGCAGCAATCCAATTGATTTCGTTAGTAGCCATGAACTTTATGAAGTTGCACTTGCATTCCGCTTGCTCAGACAAGGAGGCCATTATGTCAATGCAGGTTGGTTATATTCTCTTTGGTCGGTCTCCGTGAGCATAGTTAAGTTGGCAGATATGTTGCCGTATGTAGGGCTCAGAGTTCAAACTCAAGATTTCCCACTTATTCATTTTAAAGGATGGATTTCTAACTAA
Protein sequence

>MsG0380014169.01.T01

MQCLDEFKSIEQLLKTLSLASSDELQLLDAIYVKQALLCKQVHKKLVTSEDPTENFHLIDIIQRLGIEHYFAEEIKVALEKQFLILSSNPIDFVSSHELYEVALAFRLLRQGGHYVNAGWLYSLWSVSVSIVKLADMLPYVGLRVQTQDFPLIHFKGWISN*