Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014226.01.T01 | XP_024626708.2 | 74.342 | 152 | 39 | 0 | 74 | 225 | 142 | 293 | 2.03E-72 | 232 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014226.01.T01 | A0A396GZG8 | 72.368 | 152 | 42 | 0 | 74 | 225 | 114 | 265 | 4.53e-72 | 229 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380014226.01 | MsG0380013578.01 | PPI |
| MsG0280009322.01 | MsG0380014226.01 | PPI |
| MsG0380014226.01 | MsG0780041116.01 | PPI |
| MsG0380014226.01 | MsG0780041116.01 | PPI |
| MsG0780040274.01 | MsG0380014226.01 | PPI |
| MsG0380014226.01 | MsG0280010449.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014226.01.T01 | MTR_1g081930 | 64.957 | 117 | 41 | 0 | 63 | 179 | 14 | 130 | 2.28e-47 | 153 |
| MsG0380014226.01.T01 | MTR_5g091440 | 49.242 | 132 | 34 | 1 | 93 | 224 | 1 | 99 | 1.24e-34 | 120 |
| MsG0380014226.01.T01 | MTR_8g088220 | 67.105 | 76 | 25 | 0 | 97 | 172 | 4 | 79 | 2.98e-32 | 112 |
| MsG0380014226.01.T01 | MTR_8g038340 | 71.831 | 71 | 20 | 0 | 74 | 144 | 176 | 246 | 1.24e-30 | 113 |
| MsG0380014226.01.T01 | MTR_6g016265 | 45.000 | 100 | 55 | 0 | 74 | 173 | 26 | 125 | 1.74e-28 | 104 |
| MsG0380014226.01.T01 | MTR_0015s0120 | 50.000 | 98 | 44 | 1 | 63 | 160 | 274 | 366 | 1.53e-26 | 105 |
| MsG0380014226.01.T01 | MTR_7g063280 | 38.655 | 119 | 70 | 1 | 72 | 190 | 60 | 175 | 1.20e-25 | 98.6 |
| MsG0380014226.01.T01 | MTR_2g027020 | 36.667 | 150 | 91 | 1 | 75 | 224 | 16 | 161 | 4.61e-25 | 97.4 |
| MsG0380014226.01.T01 | MTR_1g074090 | 50.617 | 81 | 40 | 0 | 73 | 153 | 67 | 147 | 4.90e-25 | 96.3 |
| MsG0380014226.01.T01 | MTR_3g116210 | 44.898 | 98 | 54 | 0 | 73 | 170 | 83 | 180 | 4.12e-24 | 95.1 |
| MsG0380014226.01.T01 | MTR_5g049680 | 52.500 | 80 | 38 | 0 | 74 | 153 | 18 | 97 | 4.23e-24 | 92.8 |
| MsG0380014226.01.T01 | MTR_6g089560 | 32.000 | 150 | 80 | 1 | 75 | 224 | 104 | 231 | 6.03e-23 | 93.2 |
| MsG0380014226.01.T01 | MTR_3g010950 | 33.121 | 157 | 75 | 2 | 68 | 224 | 7 | 133 | 1.01e-22 | 90.1 |
| MsG0380014226.01.T01 | MTR_7g013520 | 33.775 | 151 | 75 | 1 | 74 | 224 | 57 | 182 | 1.90e-22 | 90.5 |
| MsG0380014226.01.T01 | MTR_5g034450 | 46.429 | 84 | 44 | 1 | 67 | 150 | 30 | 112 | 3.37e-22 | 87.8 |
| MsG0380014226.01.T01 | MTR_1g088650 | 39.316 | 117 | 71 | 0 | 74 | 190 | 73 | 189 | 3.58e-22 | 90.1 |
| MsG0380014226.01.T01 | MTR_5g083200 | 44.792 | 96 | 53 | 0 | 75 | 170 | 86 | 181 | 2.68e-21 | 87.8 |
| MsG0380014226.01.T01 | MTR_0002s1220 | 44.792 | 96 | 53 | 0 | 75 | 170 | 86 | 181 | 2.68e-21 | 87.8 |
| MsG0380014226.01.T01 | MTR_1g069475 | 35.000 | 140 | 88 | 1 | 30 | 166 | 104 | 243 | 4.41e-21 | 88.6 |
| MsG0380014226.01.T01 | MTR_6g453270 | 39.200 | 125 | 69 | 2 | 37 | 161 | 255 | 372 | 5.37e-21 | 90.5 |
| MsG0380014226.01.T01 | MTR_1g034430 | 37.815 | 119 | 73 | 1 | 56 | 173 | 63 | 181 | 1.54e-20 | 85.5 |
| MsG0380014226.01.T01 | MTR_8g031080 | 34.783 | 161 | 79 | 1 | 62 | 222 | 264 | 398 | 3.37e-20 | 88.2 |
| MsG0380014226.01.T01 | MTR_3g111390 | 43.750 | 96 | 54 | 0 | 75 | 170 | 86 | 181 | 4.21e-20 | 84.7 |
| MsG0380014226.01.T01 | MTR_1g070820 | 43.750 | 96 | 54 | 0 | 75 | 170 | 86 | 181 | 4.21e-20 | 84.7 |
| MsG0380014226.01.T01 | MTR_4g010930 | 70.690 | 58 | 17 | 0 | 128 | 185 | 1 | 58 | 5.13e-20 | 83.6 |
| MsG0380014226.01.T01 | MTR_5g036320 | 45.570 | 79 | 43 | 0 | 74 | 152 | 66 | 144 | 9.95e-20 | 82.4 |
| MsG0380014226.01.T01 | MTR_1g045340 | 42.708 | 96 | 55 | 0 | 75 | 170 | 72 | 167 | 1.20e-19 | 83.2 |
| MsG0380014226.01.T01 | MTR_8g031800 | 47.436 | 78 | 41 | 0 | 75 | 152 | 19 | 96 | 2.51e-19 | 80.5 |
| MsG0380014226.01.T01 | MTR_6g034915 | 30.270 | 185 | 99 | 3 | 41 | 223 | 18 | 174 | 2.69e-19 | 82.0 |
| MsG0380014226.01.T01 | MTR_8g036780 | 50.000 | 72 | 36 | 0 | 74 | 145 | 21 | 92 | 4.75e-19 | 79.7 |
| MsG0380014226.01.T01 | MTR_4g008270 | 44.304 | 79 | 44 | 0 | 88 | 166 | 11 | 89 | 1.16e-18 | 78.2 |
| MsG0380014226.01.T01 | MTR_1g050488 | 48.684 | 76 | 39 | 0 | 75 | 150 | 86 | 161 | 2.15e-18 | 79.3 |
| MsG0380014226.01.T01 | MTR_5g075610 | 42.424 | 99 | 55 | 1 | 93 | 191 | 1 | 97 | 2.57e-18 | 77.4 |
| MsG0380014226.01.T01 | MTR_5g085210 | 36.364 | 121 | 61 | 1 | 74 | 194 | 106 | 210 | 4.28e-18 | 80.1 |
| MsG0380014226.01.T01 | MTR_8g079540 | 37.500 | 112 | 65 | 1 | 45 | 151 | 1 | 112 | 7.33e-18 | 77.0 |
| MsG0380014226.01.T01 | MTR_1g017840 | 38.542 | 96 | 59 | 0 | 75 | 170 | 66 | 161 | 1.72e-17 | 77.0 |
| MsG0380014226.01.T01 | MTR_7g006380 | 34.328 | 134 | 56 | 2 | 61 | 194 | 45 | 146 | 1.82e-17 | 77.4 |
| MsG0380014226.01.T01 | MTR_5g037920 | 36.090 | 133 | 81 | 3 | 75 | 205 | 86 | 216 | 4.02e-17 | 77.4 |
| MsG0380014226.01.T01 | MTR_2g047100 | 36.283 | 113 | 57 | 1 | 74 | 186 | 5 | 102 | 6.46e-17 | 73.9 |
| MsG0380014226.01.T01 | MTR_1g109000 | 50.685 | 73 | 36 | 0 | 75 | 147 | 14 | 86 | 1.77e-16 | 72.0 |
| MsG0380014226.01.T01 | MTR_5g069700 | 47.059 | 68 | 36 | 0 | 107 | 174 | 1 | 68 | 2.44e-16 | 71.6 |
| MsG0380014226.01.T01 | MTR_6g016355 | 46.053 | 76 | 41 | 0 | 73 | 148 | 102 | 177 | 2.74e-16 | 74.3 |
| MsG0380014226.01.T01 | MTR_8g099580 | 40.625 | 96 | 57 | 0 | 75 | 170 | 194 | 289 | 2.89e-16 | 76.3 |
| MsG0380014226.01.T01 | MTR_7g082560 | 35.156 | 128 | 52 | 1 | 91 | 218 | 10 | 106 | 5.86e-16 | 71.2 |
| MsG0380014226.01.T01 | MTR_4g006490 | 47.561 | 82 | 40 | 2 | 67 | 146 | 7 | 87 | 2.39e-15 | 69.3 |
| MsG0380014226.01.T01 | MTR_0093s0070 | 41.250 | 80 | 47 | 0 | 90 | 169 | 126 | 205 | 5.02e-15 | 71.2 |
| MsG0380014226.01.T01 | MTR_8g059135 | 33.654 | 104 | 68 | 1 | 77 | 180 | 19 | 121 | 8.58e-15 | 68.9 |
| MsG0380014226.01.T01 | MTR_1g099430 | 42.857 | 70 | 40 | 0 | 74 | 143 | 112 | 181 | 1.05e-14 | 70.5 |
| MsG0380014226.01.T01 | MTR_2g059470 | 37.805 | 82 | 51 | 0 | 89 | 170 | 2 | 83 | 1.06e-14 | 67.4 |
| MsG0380014226.01.T01 | MTR_1g074240 | 47.619 | 63 | 33 | 0 | 89 | 151 | 2 | 64 | 1.06e-14 | 67.0 |
| MsG0380014226.01.T01 | MTR_4g094272 | 35.115 | 131 | 60 | 4 | 28 | 134 | 11 | 140 | 1.47e-14 | 68.6 |
| MsG0380014226.01.T01 | MTR_7g077900 | 50.769 | 65 | 32 | 0 | 161 | 225 | 64 | 128 | 1.97e-14 | 68.6 |
| MsG0380014226.01.T01 | MTR_8g022750 | 28.834 | 163 | 81 | 2 | 40 | 184 | 140 | 285 | 2.39e-14 | 70.9 |
| MsG0380014226.01.T01 | MTR_4g029360 | 33.333 | 114 | 76 | 0 | 74 | 187 | 114 | 227 | 3.54e-14 | 69.3 |
| MsG0380014226.01.T01 | MTR_8g098925 | 36.957 | 92 | 58 | 0 | 93 | 184 | 71 | 162 | 6.18e-14 | 67.4 |
| MsG0380014226.01.T01 | MTR_4g064590 | 34.146 | 123 | 72 | 3 | 107 | 224 | 43 | 161 | 1.69e-13 | 66.2 |
| MsG0380014226.01.T01 | MTR_1g045560 | 35.000 | 100 | 49 | 2 | 93 | 192 | 1 | 84 | 3.31e-13 | 63.9 |
| MsG0380014226.01.T01 | MTR_4g073820 | 52.239 | 67 | 25 | 2 | 93 | 159 | 1 | 60 | 5.13e-13 | 62.8 |
| MsG0380014226.01.T01 | MTR_1g018300 | 34.906 | 106 | 63 | 1 | 74 | 179 | 50 | 149 | 7.20e-13 | 66.2 |
| MsG0380014226.01.T01 | MTR_4g046027 | 50.909 | 55 | 27 | 0 | 74 | 128 | 114 | 168 | 7.49e-13 | 64.7 |
| MsG0380014226.01.T01 | MTR_7g053400 | 35.238 | 105 | 34 | 1 | 93 | 197 | 181 | 251 | 9.30e-13 | 65.9 |
| MsG0380014226.01.T01 | MTR_6g033225 | 37.037 | 81 | 51 | 0 | 75 | 155 | 58 | 138 | 1.01e-12 | 63.5 |
| MsG0380014226.01.T01 | MTR_5g031620 | 39.759 | 83 | 50 | 0 | 142 | 224 | 139 | 221 | 1.63e-12 | 64.7 |
| MsG0380014226.01.T01 | MTR_8g028785 | 34.167 | 120 | 55 | 1 | 75 | 194 | 270 | 365 | 2.42e-12 | 65.5 |
| MsG0380014226.01.T01 | MTR_5g083510 | 37.333 | 75 | 47 | 0 | 150 | 224 | 17 | 91 | 6.55e-12 | 60.1 |
| MsG0380014226.01.T01 | MTR_3g026270 | 44.444 | 54 | 30 | 0 | 93 | 146 | 1 | 54 | 9.49e-12 | 58.9 |
| MsG0380014226.01.T01 | MTR_3g462490 | 30.769 | 104 | 64 | 1 | 32 | 127 | 38 | 141 | 9.60e-12 | 63.9 |
| MsG0380014226.01.T01 | MTR_6g016135 | 40.816 | 98 | 46 | 3 | 53 | 150 | 357 | 442 | 1.07e-11 | 63.9 |
| MsG0380014226.01.T01 | MTR_5g068115 | 52.273 | 44 | 21 | 0 | 74 | 117 | 21 | 64 | 1.14e-11 | 58.9 |
| MsG0380014226.01.T01 | MTR_1g022215 | 41.176 | 68 | 40 | 0 | 75 | 142 | 2 | 69 | 1.58e-11 | 59.3 |
| MsG0380014226.01.T01 | MTR_4g094370 | 47.368 | 57 | 30 | 0 | 73 | 129 | 21 | 77 | 4.00e-11 | 57.8 |
| MsG0380014226.01.T01 | MTR_8g045330 | 43.103 | 58 | 33 | 0 | 74 | 131 | 84 | 141 | 6.92e-11 | 59.3 |
| MsG0380014226.01.T01 | MTR_3g064060 | 65.714 | 35 | 12 | 0 | 74 | 108 | 24 | 58 | 8.68e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCAACCTGATTCAAAGTA+TGG | 0.285061 | 3:+51617505 | None:intergenic |
| CTTTCCCCATACTTTGAATC+AGG | 0.295897 | 3:-51617511 | MsG0380014226.01.T01:CDS |
| GAGACTATCCACCATAGTTT+TGG | 0.309751 | 3:+51617320 | None:intergenic |
| TGAGTTTGATTCCAAAACTA+TGG | 0.314756 | 3:-51617331 | MsG0380014226.01.T01:CDS |
| CCTCTGATGTTAGATTTATT+CGG | 0.332273 | 3:-51617218 | MsG0380014226.01.T01:CDS |
| GTTTATTATCAGCTCTTCAT+TGG | 0.352192 | 3:-51617386 | MsG0380014226.01.T01:CDS |
| GTGGACTTACGGGATACTTT+AGG | 0.355948 | 3:-51617408 | MsG0380014226.01.T01:CDS |
| GTGTTCGATGCCGCTGTGTT+TGG | 0.378459 | 3:-51619019 | MsG0380014226.01.T01:CDS |
| ACTCCTTAATGTGGACTTAC+GGG | 0.393456 | 3:-51617418 | MsG0380014226.01.T01:CDS |
| ACTATGGTGGATAGTCTCTA+TGG | 0.395602 | 3:-51617315 | MsG0380014226.01.T01:CDS |
| TATCCCGTAAGTCCACATTA+AGG | 0.407094 | 3:+51617415 | None:intergenic |
| TTTATTATCAGCTCTTCATT+GGG | 0.410584 | 3:-51617385 | MsG0380014226.01.T01:CDS |
| CTACATTACATTTGTACATC+AGG | 0.422079 | 3:+51617541 | None:intergenic |
| CACTCCTTAATGTGGACTTA+CGG | 0.437721 | 3:-51617419 | MsG0380014226.01.T01:CDS |
| AAGTTGCTCATAGTTTCGTT+GGG | 0.442971 | 3:-51617182 | MsG0380014226.01.T01:CDS |
| GCGGCATCGAACACCGCATC+AGG | 0.454102 | 3:+51619028 | None:intergenic |
| ACCAACCCTCCCACATCATC+CGG | 0.457216 | 3:+51619058 | None:intergenic |
| CGATGCCGCTGTGTTTGGAA+TGG | 0.461475 | 3:-51619014 | MsG0380014226.01.T01:CDS |
| CCCCATACTTTGAATCAGGT+TGG | 0.462075 | 3:-51617507 | MsG0380014226.01.T01:CDS |
| GAAGTTGCTCATAGTTTCGT+TGG | 0.482222 | 3:-51617183 | MsG0380014226.01.T01:CDS |
| TTGCGCTGGCTAAAATAGAA+TGG | 0.487906 | 3:-51617449 | MsG0380014226.01.T01:CDS |
| TATGAAAACTAGCATGACAT+TGG | 0.498832 | 3:+51617154 | None:intergenic |
| GATGCCGCTGTGTTTGGAAT+GGG | 0.503126 | 3:-51619013 | MsG0380014226.01.T01:CDS |
| ATGAAAACTAGCATGACATT+GGG | 0.522417 | 3:+51617155 | None:intergenic |
| CGGAATTGCCTGCGTACCAC+CGG | 0.523874 | 3:-51619077 | MsG0380014226.01.T01:CDS |
| AGTCTCTATGGTGGTAAAAG+TGG | 0.526886 | 3:-51617303 | MsG0380014226.01.T01:CDS |
| GCCAACCTGATTCAAAGTAT+GGG | 0.528402 | 3:+51617506 | None:intergenic |
| TACATTTGTACATCAGGACT+TGG | 0.532179 | 3:+51617547 | None:intergenic |
| CTGCGTACCACCGGATGATG+TGG | 0.549566 | 3:-51619068 | MsG0380014226.01.T01:CDS |
| TGCTCATAGTTTCGTTGGGG+CGG | 0.551961 | 3:-51617178 | MsG0380014226.01.T01:CDS |
| GTTTGATTCCAAAACTATGG+TGG | 0.561471 | 3:-51617328 | MsG0380014226.01.T01:CDS |
| CTCTTTGAAGAGATTTACAA+TGG | 0.563653 | 3:-51617576 | MsG0380014226.01.T01:CDS |
| CACATCATCCGGTGGTACGC+AGG | 0.564354 | 3:+51619069 | None:intergenic |
| CCGAATAAATCTAACATCAG+AGG | 0.575868 | 3:+51617218 | None:intergenic |
| ACCGGATGATGTGGGAGGGT+TGG | 0.577510 | 3:-51619059 | MsG0380014226.01.T01:CDS |
| ATAATAGTAGAGATACAAGA+TGG | 0.577856 | 3:+51617117 | None:intergenic |
| GAAACTATGAGCAACTTCGT+TGG | 0.578829 | 3:+51617188 | None:intergenic |
| ACTGTCGTCGTGGTACTACT+CGG | 0.579846 | 3:-51619097 | MsG0380014226.01.T01:CDS |
| CTGATTCAAAGTATGGGGAA+AGG | 0.591705 | 3:+51617512 | None:intergenic |
| GCTGTGTTTGGAATGGGAGG+AGG | 0.594228 | 3:-51619007 | MsG0380014226.01.T01:CDS |
| AGTTGCTCATAGTTTCGTTG+GGG | 0.608608 | 3:-51617181 | MsG0380014226.01.T01:CDS |
| GCCGCTGTGTTTGGAATGGG+AGG | 0.616518 | 3:-51619010 | MsG0380014226.01.T01:CDS |
| GTACCACCGGATGATGTGGG+AGG | 0.621642 | 3:-51619064 | MsG0380014226.01.T01:CDS |
| GTTGACTCCACTCCTTAATG+TGG | 0.624389 | 3:-51617427 | MsG0380014226.01.T01:CDS |
| TGCGTACCACCGGATGATGT+GGG | 0.625368 | 3:-51619067 | MsG0380014226.01.T01:CDS |
| CCAACCTGATTCAAAGTATG+GGG | 0.625693 | 3:+51617507 | None:intergenic |
| CATCTCGAATACACATGTCA+AGG | 0.630118 | 3:+51617484 | None:intergenic |
| CGTAAGTCCACATTAAGGAG+TGG | 0.640702 | 3:+51617420 | None:intergenic |
| ATGTGTATTCGAGATGATGA+AGG | 0.642283 | 3:-51617477 | MsG0380014226.01.T01:CDS |
| GTTGGTTGATGTTCCTGATG+CGG | 0.648717 | 3:-51619041 | MsG0380014226.01.T01:CDS |
| AACCCTCCCACATCATCCGG+TGG | 0.664766 | 3:+51619061 | None:intergenic |
| TACCACCGGATGATGTGGGA+GGG | 0.671432 | 3:-51619063 | MsG0380014226.01.T01:CDS |
| ATGGTGGATAGTCTCTATGG+TGG | 0.674715 | 3:-51617312 | MsG0380014226.01.T01:CDS |
| AGTTTCTAATACTGTCGTCG+TGG | 0.679086 | 3:-51619107 | MsG0380014226.01.T01:CDS |
| TGATCTACAATTCAGAACTG+TGG | 0.695003 | 3:-51617358 | MsG0380014226.01.T01:CDS |
| AGAAACTGTCGAATCAACGA+TGG | 0.702179 | 3:+51619123 | None:intergenic |
| TCCTCCCATTCCAAACACAG+CGG | 0.756094 | 3:+51619009 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCAGTGTAAACAAAT+TGG | + | Chr3:51617370-51617389 | None:intergenic | 20.0% |
| !! | AAGTACAATTTCAAATAGTT+TGG | + | Chr3:51618608-51618627 | None:intergenic | 20.0% |
| !! | AGAACTATATTTATACAGTT+AGG | - | Chr3:51618089-51618108 | MsG0380014226.01.T01:intron | 20.0% |
| !! | AGTACAATTTCAAATAGTTT+GGG | + | Chr3:51618607-51618626 | None:intergenic | 20.0% |
| !! | ATTTGTTCGATTTATATTGT+TGG | + | Chr3:51617298-51617317 | None:intergenic | 20.0% |
| !! | TTTAAGAACATTACATTTCT+TGG | + | Chr3:51617476-51617495 | None:intergenic | 20.0% |
| !! | TTTACTTAACAAAATTCGAT+TGG | + | Chr3:51617550-51617569 | None:intergenic | 20.0% |
| !!! | AATTTGTTTACACTGATTTT+TGG | - | Chr3:51617369-51617388 | MsG0380014226.01.T01:CDS | 20.0% |
| !!! | AGTAACTATTTTTAAACCAA+CGG | + | Chr3:51617402-51617421 | None:intergenic | 20.0% |
| !!! | TAAAAAACAACTTTCTGAAA+TGG | + | Chr3:51617249-51617268 | None:intergenic | 20.0% |
| !!! | TAAGTTTGAAATTCGAATTT+AGG | + | Chr3:51617797-51617816 | None:intergenic | 20.0% |
| ! | ATAATAGTAGAGATACAAGA+TGG | + | Chr3:51619111-51619130 | None:intergenic | 25.0% |
| ! | ATGATAGCCTTCAAAAATAT+AGG | - | Chr3:51618049-51618068 | MsG0380014226.01.T01:intron | 25.0% |
| ! | GGACATTATAAATCATGATT+TGG | - | Chr3:51618123-51618142 | MsG0380014226.01.T01:intron | 25.0% |
| ! | TTTATTATCAGCTCTTCATT+GGG | - | Chr3:51618840-51618859 | MsG0380014226.01.T01:intron | 25.0% |
| !! | CTATTTGAAATTGTACTTCT+AGG | - | Chr3:51618610-51618629 | MsG0380014226.01.T01:intron | 25.0% |
| !! | GTAAATAGTAGTTTTTCCTA+AGG | + | Chr3:51617757-51617776 | None:intergenic | 25.0% |
| AAAATTCGATTGGATTCAAC+TGG | + | Chr3:51617540-51617559 | None:intergenic | 30.0% | |
| AAATTCGATTGGATTCAACT+GGG | + | Chr3:51617539-51617558 | None:intergenic | 30.0% | |
| AAGATCAACCAGTAAATCTT+AGG | - | Chr3:51617425-51617444 | MsG0380014226.01.T01:CDS | 30.0% | |
| AATATGCTCCTAAGATTTAC+TGG | + | Chr3:51617436-51617455 | None:intergenic | 30.0% | |
| ATGAAAACTAGCATGACATT+GGG | + | Chr3:51619073-51619092 | None:intergenic | 30.0% | |
| ATGCTTCCAAATACTTCATA+GGG | + | Chr3:51618496-51618515 | None:intergenic | 30.0% | |
| CAAAGGTTGAGAATTTCTTA+TGG | - | Chr3:51618206-51618225 | MsG0380014226.01.T01:intron | 30.0% | |
| CATAAGAAATTCTCAACCTT+TGG | + | Chr3:51618208-51618227 | None:intergenic | 30.0% | |
| CCTCTGATGTTAGATTTATT+CGG | - | Chr3:51619007-51619026 | MsG0380014226.01.T01:CDS | 30.0% | |
| CTACATTACATTTGTACATC+AGG | + | Chr3:51618687-51618706 | None:intergenic | 30.0% | |
| GTTTATTATCAGCTCTTCAT+TGG | - | Chr3:51618839-51618858 | MsG0380014226.01.T01:intron | 30.0% | |
| TATGAAAACTAGCATGACAT+TGG | + | Chr3:51619074-51619093 | None:intergenic | 30.0% | |
| TATGCTTCCAAATACTTCAT+AGG | + | Chr3:51618497-51618516 | None:intergenic | 30.0% | |
| TCTTCATTTCTTCGATGATA+AGG | - | Chr3:51617991-51618010 | MsG0380014226.01.T01:intron | 30.0% | |
| TGAGTTTGATTCCAAAACTA+TGG | - | Chr3:51618894-51618913 | MsG0380014226.01.T01:intron | 30.0% | |
| TTACACTCAAATTATCCGTA+TGG | + | Chr3:51617704-51617723 | None:intergenic | 30.0% | |
| ! | AATTGTGAACACTTTTCCTT+AGG | - | Chr3:51617738-51617757 | MsG0380014226.01.T01:intron | 30.0% |
| ! | CTCTTTGAAGAGATTTACAA+TGG | - | Chr3:51618649-51618668 | MsG0380014226.01.T01:intron | 30.0% |
| ! | TATGAAGTATTTGGAAGCAT+AGG | - | Chr3:51618496-51618515 | MsG0380014226.01.T01:intron | 30.0% |
| ! | TCAATCCTACTACAAGTTTT+CGG | - | Chr3:51618409-51618428 | MsG0380014226.01.T01:intron | 30.0% |
| !! | AAACTATTTGTTATCGTGCA+GGG | - | Chr3:51618556-51618575 | MsG0380014226.01.T01:intron | 30.0% |
| !! | CTGTTAGCCTATATTTTTGA+AGG | + | Chr3:51618059-51618078 | None:intergenic | 30.0% |
| !! | TGCATTGATTGAATGTAAAC+CGG | - | Chr3:51617635-51617654 | MsG0380014226.01.T01:intron | 30.0% |
| !!! | GGATTATGAAGTGTTTTGAT+AGG | - | Chr3:51618381-51618400 | MsG0380014226.01.T01:intron | 30.0% |
| AAGAAATTCTCAACCTTTGG+TGG | + | Chr3:51618205-51618224 | None:intergenic | 35.0% | |
| AAGTTGCTCATAGTTTCGTT+GGG | - | Chr3:51619043-51619062 | MsG0380014226.01.T01:CDS | 35.0% | |
| AGAGTTCGGTTGCAATAAAA+AGG | - | Chr3:51618256-51618275 | MsG0380014226.01.T01:intron | 35.0% | |
| AGCATAGGAATAACAAGGTT+TGG | - | Chr3:51618511-51618530 | MsG0380014226.01.T01:intron | 35.0% | |
| ATCGGTTATCATTTCGGATA+AGG | + | Chr3:51617896-51617915 | None:intergenic | 35.0% | |
| ATGTGTATTCGAGATGATGA+AGG | - | Chr3:51618748-51618767 | MsG0380014226.01.T01:intron | 35.0% | |
| CAATGTATGAATCTGTGTAC+CGG | + | Chr3:51617657-51617676 | None:intergenic | 35.0% | |
| CCGAATAAATCTAACATCAG+AGG | + | Chr3:51619010-51619029 | None:intergenic | 35.0% | |
| CGCTATGAAATTATCCACAA+AGG | - | Chr3:51617320-51617339 | MsG0380014226.01.T01:CDS | 35.0% | |
| GCAGTAAAAATGTGCTTTGT+TGG | - | Chr3:51618349-51618368 | MsG0380014226.01.T01:intron | 35.0% | |
| GTTTGATTCCAAAACTATGG+TGG | - | Chr3:51618897-51618916 | MsG0380014226.01.T01:intron | 35.0% | |
| TACATTTGTACATCAGGACT+TGG | + | Chr3:51618681-51618700 | None:intergenic | 35.0% | |
| TGATCTACAATTCAGAACTG+TGG | - | Chr3:51618867-51618886 | MsG0380014226.01.T01:intron | 35.0% | |
| TTTATCGAAGTTAGACTTGC+TGG | + | Chr3:51617958-51617977 | None:intergenic | 35.0% | |
| TTTGTCCGAAAACTTGTAGT+AGG | + | Chr3:51618417-51618436 | None:intergenic | 35.0% | |
| ! | TTATCCACAAAGGCACAAAA+AGG | - | Chr3:51617330-51617349 | MsG0380014226.01.T01:CDS | 35.0% |
| ! | TTATCGAAGTTAGACTTGCT+GGG | + | Chr3:51617957-51617976 | None:intergenic | 35.0% |
| ! | TTGGAAGCATAGGAATAACA+AGG | - | Chr3:51618506-51618525 | MsG0380014226.01.T01:intron | 35.0% |
| !! | CAAACTATTTGTTATCGTGC+AGG | - | Chr3:51618555-51618574 | MsG0380014226.01.T01:intron | 35.0% |
| !!! | GATTTTTGGTAAACAACCGT+TGG | - | Chr3:51617383-51617402 | MsG0380014226.01.T01:CDS | 35.0% |
| !!! | GTTTGCTATTTTACAACACC+TGG | - | Chr3:51618440-51618459 | MsG0380014226.01.T01:intron | 35.0% |
| AATGATAACCGATCCTCGAT+AGG | - | Chr3:51617903-51617922 | MsG0380014226.01.T01:intron | 40.0% | |
| ACTCCTTAATGTGGACTTAC+GGG | - | Chr3:51618807-51618826 | MsG0380014226.01.T01:intron | 40.0% | |
| AGAAACTGTCGAATCAACGA+TGG | + | Chr3:51617105-51617124 | None:intergenic | 40.0% | |
| AGTCTCTATGGTGGTAAAAG+TGG | - | Chr3:51618922-51618941 | MsG0380014226.01.T01:intron | 40.0% | |
| AGTTGCTCATAGTTTCGTTG+GGG | - | Chr3:51619044-51619063 | MsG0380014226.01.T01:CDS | 40.0% | |
| AGTTTCTAATACTGTCGTCG+TGG | - | Chr3:51617118-51617137 | MsG0380014226.01.T01:CDS | 40.0% | |
| CACTCCTTAATGTGGACTTA+CGG | - | Chr3:51618806-51618825 | MsG0380014226.01.T01:intron | 40.0% | |
| CAGCAGCAAAAACAACTTTC+TGG | - | Chr3:51618465-51618484 | MsG0380014226.01.T01:intron | 40.0% | |
| CATCTCGAATACACATGTCA+AGG | + | Chr3:51618744-51618763 | None:intergenic | 40.0% | |
| CCAACCTGATTCAAAGTATG+GGG | + | Chr3:51618721-51618740 | None:intergenic | 40.0% | |
| CTGATTCAAAGTATGGGGAA+AGG | + | Chr3:51618716-51618735 | None:intergenic | 40.0% | |
| CTTTCCCCATACTTTGAATC+AGG | - | Chr3:51618714-51618733 | MsG0380014226.01.T01:intron | 40.0% | |
| GAAACTATGAGCAACTTCGT+TGG | + | Chr3:51619040-51619059 | None:intergenic | 40.0% | |
| GAAGTTGCTCATAGTTTCGT+TGG | - | Chr3:51619042-51619061 | MsG0380014226.01.T01:CDS | 40.0% | |
| GCCAACCTGATTCAAAGTAT+GGG | + | Chr3:51618722-51618741 | None:intergenic | 40.0% | |
| TATCCCGTAAGTCCACATTA+AGG | + | Chr3:51618813-51618832 | None:intergenic | 40.0% | |
| TCGAGGATCGGTTATCATTT+CGG | + | Chr3:51617902-51617921 | None:intergenic | 40.0% | |
| TTTCGGATAAGGACAAGCAA+CGG | + | Chr3:51617885-51617904 | None:intergenic | 40.0% | |
| ! | CAGGGTCTTTTCTTACTAGT+TGG | - | Chr3:51618574-51618593 | MsG0380014226.01.T01:intron | 40.0% |
| ! | GAGACTATCCACCATAGTTT+TGG | + | Chr3:51618908-51618927 | None:intergenic | 40.0% |
| ! | GTGTGACCCTATGAAGTATT+TGG | - | Chr3:51618487-51618506 | MsG0380014226.01.T01:intron | 40.0% |
| ! | TACAGTTAGGAGTGCGTATA+AGG | - | Chr3:51618102-51618121 | MsG0380014226.01.T01:intron | 40.0% |
| !! | ACTATGGTGGATAGTCTCTA+TGG | - | Chr3:51618910-51618929 | MsG0380014226.01.T01:intron | 40.0% |
| !! | CAAACACAATTCTAGTTCCC+CGG | + | Chr3:51618169-51618188 | None:intergenic | 40.0% |
| !! | TTGCGCTGGCTAAAATAGAA+TGG | - | Chr3:51618776-51618795 | MsG0380014226.01.T01:intron | 40.0% |
| ACTCGTTTCTCGCTTCCATA+CGG | - | Chr3:51617686-51617705 | MsG0380014226.01.T01:intron | 45.0% | |
| ACTGTTTGCCTACGAGAGTT+CGG | - | Chr3:51618242-51618261 | MsG0380014226.01.T01:intron | 45.0% | |
| CCCCATACTTTGAATCAGGT+TGG | - | Chr3:51618718-51618737 | MsG0380014226.01.T01:intron | 45.0% | |
| CGGGGAACTAGAATTGTGTT+TGG | - | Chr3:51618167-51618186 | MsG0380014226.01.T01:intron | 45.0% | |
| CGTAAGTCCACATTAAGGAG+TGG | + | Chr3:51618808-51618827 | None:intergenic | 45.0% | |
| GGCCAACCTGATTCAAAGTA+TGG | + | Chr3:51618723-51618742 | None:intergenic | 45.0% | |
| GTGGACTTACGGGATACTTT+AGG | - | Chr3:51618817-51618836 | MsG0380014226.01.T01:intron | 45.0% | |
| TATTGCAACCGAACTCTCGT+AGG | + | Chr3:51618253-51618272 | None:intergenic | 45.0% | |
| TGTAAACAAATTGGCACGCC+CGG | + | Chr3:51617361-51617380 | None:intergenic | 45.0% | |
| TTGCGTTGTGCATGCTCTTA+AGG | + | Chr3:51617274-51617293 | None:intergenic | 45.0% | |
| ! | GTGCTTTGTTGGCAATGTGT+CGG | - | Chr3:51618360-51618379 | MsG0380014226.01.T01:intron | 45.0% |
| ! | GTTGACTCCACTCCTTAATG+TGG | - | Chr3:51618798-51618817 | MsG0380014226.01.T01:intron | 45.0% |
| ! | GTTGGTTGATGTTCCTGATG+CGG | - | Chr3:51617184-51617203 | MsG0380014226.01.T01:CDS | 45.0% |
| !! | ATGGTGGATAGTCTCTATGG+TGG | - | Chr3:51618913-51618932 | MsG0380014226.01.T01:intron | 45.0% |
| !!! | GTTGTTTTTGCTGCTGATCC+AGG | + | Chr3:51618461-51618480 | None:intergenic | 45.0% |
| AAGGCACAAAAAGGTCCCAC+CGG | - | Chr3:51617339-51617358 | MsG0380014226.01.T01:CDS | 50.0% | |
| ACTGTCGTCGTGGTACTACT+CGG | - | Chr3:51617128-51617147 | MsG0380014226.01.T01:CDS | 50.0% | |
| AGCTCTACAACATCGTGTGC+CGG | - | Chr3:51618147-51618166 | MsG0380014226.01.T01:intron | 50.0% | |
| ATAGGTTTCGTCCGTCGAAC+TGG | - | Chr3:51617921-51617940 | MsG0380014226.01.T01:intron | 50.0% | |
| CAAGCAACGGCCATCTCTAA+AGG | + | Chr3:51617872-51617891 | None:intergenic | 50.0% | |
| GAGCACATGTTCCAGTTCGA+CGG | + | Chr3:51617935-51617954 | None:intergenic | 50.0% | |
| GGACGAAACCTATCGAGGAT+CGG | + | Chr3:51617914-51617933 | None:intergenic | 50.0% | |
| GTGTGTGAAGAGAGTGGTGA+AGG | - | Chr3:51618303-51618322 | MsG0380014226.01.T01:intron | 50.0% | |
| TCCTCCCATTCCAAACACAG+CGG | + | Chr3:51617219-51617238 | None:intergenic | 50.0% | |
| TGCTCATAGTTTCGTTGGGG+CGG | - | Chr3:51619047-51619066 | MsG0380014226.01.T01:CDS | 50.0% | |
| ! | GATGCCGCTGTGTTTGGAAT+GGG | - | Chr3:51617212-51617231 | MsG0380014226.01.T01:CDS | 50.0% |
| ! | GGGACCTTTTTGTGCCTTTG+TGG | + | Chr3:51617337-51617356 | None:intergenic | 50.0% |
| ! | TTCACACACGTGCACTGATC+AGG | + | Chr3:51618292-51618311 | None:intergenic | 50.0% |
| ! | TTCGAACGCGCCTTTAGAGA+TGG | - | Chr3:51617859-51617878 | MsG0380014226.01.T01:intron | 50.0% |
| !! | TGATGAAGGTCGTTTTGCGC+TGG | - | Chr3:51618762-51618781 | MsG0380014226.01.T01:intron | 50.0% |
| AAACAAATTGGCACGCCCGG+TGG | + | Chr3:51617358-51617377 | None:intergenic | 55.0% | |
| AACAAATTGGCACGCCCGGT+GGG | + | Chr3:51617357-51617376 | None:intergenic | 55.0% | |
| ACCAACCCTCCCACATCATC+CGG | + | Chr3:51617170-51617189 | None:intergenic | 55.0% | |
| AGGCACAAAAAGGTCCCACC+GGG | - | Chr3:51617340-51617359 | MsG0380014226.01.T01:CDS | 55.0% | |
| CGATGCCGCTGTGTTTGGAA+TGG | - | Chr3:51617211-51617230 | MsG0380014226.01.T01:CDS | 55.0% | |
| CTCTACAACATCGTGTGCCG+GGG | - | Chr3:51618149-51618168 | MsG0380014226.01.T01:intron | 55.0% | |
| GAAGCTCATGCTGCCACCAA+AGG | - | Chr3:51618189-51618208 | MsG0380014226.01.T01:intron | 55.0% | |
| GCTCTACAACATCGTGTGCC+GGG | - | Chr3:51618148-51618167 | MsG0380014226.01.T01:intron | 55.0% | |
| GTGCACGTGTGTGAAGAGAG+TGG | - | Chr3:51618297-51618316 | MsG0380014226.01.T01:intron | 55.0% | |
| GTGTTCGATGCCGCTGTGTT+TGG | - | Chr3:51617206-51617225 | MsG0380014226.01.T01:CDS | 55.0% | |
| TACCACCGGATGATGTGGGA+GGG | - | Chr3:51617162-51617181 | MsG0380014226.01.T01:CDS | 55.0% | |
| TCGACGGACGAAACCTATCG+AGG | + | Chr3:51617919-51617938 | None:intergenic | 55.0% | |
| TGCGTACCACCGGATGATGT+GGG | - | Chr3:51617158-51617177 | MsG0380014226.01.T01:CDS | 55.0% | |
| ! | GCTGTGTTTGGAATGGGAGG+AGG | - | Chr3:51617218-51617237 | MsG0380014226.01.T01:CDS | 55.0% |
| AACCCTCCCACATCATCCGG+TGG | + | Chr3:51617167-51617186 | None:intergenic | 60.0% | |
| ACCGGATGATGTGGGAGGGT+TGG | - | Chr3:51617166-51617185 | MsG0380014226.01.T01:CDS | 60.0% | |
| CACATCATCCGGTGGTACGC+AGG | + | Chr3:51617159-51617178 | None:intergenic | 60.0% | |
| CGGAATTGCCTGCGTACCAC+CGG | - | Chr3:51617148-51617167 | MsG0380014226.01.T01:CDS | 60.0% | |
| CTGCGTACCACCGGATGATG+TGG | - | Chr3:51617157-51617176 | MsG0380014226.01.T01:CDS | 60.0% | |
| GTACCACCGGATGATGTGGG+AGG | - | Chr3:51617161-51617180 | MsG0380014226.01.T01:CDS | 60.0% | |
| ! | GCCGCTGTGTTTGGAATGGG+AGG | - | Chr3:51617215-51617234 | MsG0380014226.01.T01:CDS | 60.0% |
| ! | GCGGCATCGAACACCGCATC+AGG | + | Chr3:51617200-51617219 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 51617098 | 51619149 | 51617098 | ID=MsG0380014226.01;Name=MsG0380014226.01 |
| Chr3 | mRNA | 51617098 | 51619149 | 51617098 | ID=MsG0380014226.01.T01;Parent=MsG0380014226.01;Name=MsG0380014226.01.T01;_AED=0.57;_eAED=0.57;_QI=0|0|0|1|0|0|2|0|225 |
| Chr3 | exon | 51618990 | 51619149 | 51618990 | ID=MsG0380014226.01.T01:exon:9517;Parent=MsG0380014226.01.T01 |
| Chr3 | exon | 51617098 | 51617615 | 51617098 | ID=MsG0380014226.01.T01:exon:9516;Parent=MsG0380014226.01.T01 |
| Chr3 | CDS | 51618990 | 51619149 | 51618990 | ID=MsG0380014226.01.T01:cds;Parent=MsG0380014226.01.T01 |
| Chr3 | CDS | 51617098 | 51617615 | 51617098 | ID=MsG0380014226.01.T01:cds;Parent=MsG0380014226.01.T01 |
| Gene Sequence |
| Protein sequence |
