AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014480.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014480.01.T01 MTR_3g058510 91.601 381 32 0 1 381 1 381 0.0 709
MsG0380014480.01.T01 MTR_7g098270 68.750 208 43 1 1 208 1 186 2.17e-94 282
MsG0380014480.01.T01 MTR_4g133620 40.519 385 210 10 6 377 3 381 6.10e-81 253
MsG0380014480.01.T01 MTR_2g026080 39.370 381 215 9 7 377 10 384 3.05e-76 241
MsG0380014480.01.T01 MTR_7g051910 36.148 379 232 7 1 378 3 372 1.15e-74 237
MsG0380014480.01.T01 MTR_8g009880 29.526 359 230 7 37 379 32 383 5.38e-54 184
MsG0380014480.01.T01 MTR_5g093520 32.021 381 236 11 7 371 16 389 4.11e-47 166
MsG0380014480.01.T01 MTR_5g097620 29.919 371 236 9 26 379 60 423 7.20e-47 166
MsG0380014480.01.T01 MTR_8g028075 28.904 301 196 8 71 367 267 553 2.97e-28 116
MsG0380014480.01.T01 MTR_8g011650 32.195 205 130 5 1 198 1 203 3.90e-27 108
MsG0380014480.01.T01 MTR_7g117375 27.119 295 197 7 87 378 104 383 3.60e-23 100
MsG0380014480.01.T01 MTR_5g097610 60.345 58 21 2 94 150 20 76 4.44e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014480.01.T01 AT5G47530 42.090 354 200 5 26 377 27 377 4.71e-93 284
MsG0380014480.01.T01 AT3G59070 40.443 361 202 8 26 379 37 391 2.13e-89 277
MsG0380014480.01.T01 AT5G35735 41.176 357 194 9 26 377 29 374 4.22e-86 267
MsG0380014480.01.T01 AT4G17280 39.410 373 218 6 7 375 15 383 1.53e-85 265
MsG0380014480.01.T01 AT3G25290 37.401 377 223 9 13 379 15 388 6.67e-77 243
MsG0380014480.01.T01 AT3G25290 37.401 377 223 9 13 379 15 388 6.67e-77 243
MsG0380014480.01.T01 AT4G12980 38.827 358 206 8 30 377 33 387 6.04e-74 235
MsG0380014480.01.T01 AT5G48750 39.419 241 138 4 7 244 15 250 4.97e-58 189
MsG0380014480.01.T01 AT2G04850 29.581 382 239 10 19 379 16 388 5.45e-49 171
MsG0380014480.01.T01 AT3G07570 28.533 368 206 15 11 364 39 363 1.99e-26 108
MsG0380014480.01.T01 AT3G07390 32.317 164 107 4 26 186 50 212 8.25e-20 89.0
MsG0380014480.01.T01 AT3G61750 25.419 358 216 15 19 364 52 370 1.43e-19 90.1
MsG0380014480.01.T01 AT3G61750 26.159 302 194 13 73 364 11 293 5.25e-19 87.4
MsG0380014480.01.T01 AT3G07390 35.789 95 59 2 26 118 50 144 1.07e-11 63.2

Find 83 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCATTCGAATTAGGGTTTA+TGG 0.103172 3:+55447632 None:intergenic
CTTGCATATTGAAGATTATT+TGG 0.126339 3:+55447774 None:intergenic
CCTATCATGCCATTCGAATT+AGG 0.133334 3:+55447624 None:intergenic
ATTATCTATGCTTGTGTAAT+TGG 0.156616 3:-55445972 MsG0380014480.01.T01:CDS
GGAGAAAATGTTCAAAGTTT+TGG 0.201378 3:-55447345 MsG0380014480.01.T01:CDS
CTATACTTGTGATCTTTCTT+TGG 0.217638 3:+55446104 None:intergenic
CTTCCGGTTTATGATATTTC+GGG 0.219832 3:-55447498 MsG0380014480.01.T01:CDS
TAGTGATTGGAATCAAAATT+TGG 0.234029 3:-55445834 MsG0380014480.01.T01:three_prime_UTR
AGAAGTTACTTACGATTCTT+AGG 0.256872 3:+55447253 None:intergenic
TCTTCCGGTTTATGATATTT+CGG 0.274364 3:-55447499 MsG0380014480.01.T01:CDS
GTGAGAAGCAAAAGAAGTTT+TGG 0.275292 3:+55447855 None:intergenic
CTATCATGCCATTCGAATTA+GGG 0.275913 3:+55447625 None:intergenic
CCTAATTCGAATGGCATGAT+AGG 0.312177 3:-55447624 MsG0380014480.01.T01:CDS
TTTCTTGGATTATGTGGTTA+TGG 0.314857 3:-55445914 MsG0380014480.01.T01:CDS
TGTGGTGTGTTGTGAATTCC+TGG 0.319593 3:+55446194 None:intergenic
TACCCTCTTGTAACATAGTT+TGG 0.326972 3:+55447529 None:intergenic
CAACCATTATCTTAGCTATA+TGG 0.338799 3:-55446043 MsG0380014480.01.T01:CDS
TGAGTTTAGAAGTTGTTTCT+TGG 0.344082 3:-55445929 MsG0380014480.01.T01:CDS
TGCTTGTGTAATTGGATGTT+TGG 0.347772 3:-55445964 MsG0380014480.01.T01:CDS
AATGCCAATTGGAGTAATAA+TGG 0.350857 3:-55446345 MsG0380014480.01.T01:CDS
ATCGGTTATCGAAACTTTGA+TGG 0.359357 3:-55447588 MsG0380014480.01.T01:CDS
GTTGATGAAAGATGTGAAAA+AGG 0.368390 3:+55447833 None:intergenic
CAATGTATAGCATTATTATT+CGG 0.371844 3:-55446257 MsG0380014480.01.T01:CDS
AGAGGGTAACATTAGTCTTC+CGG 0.375780 3:-55447514 MsG0380014480.01.T01:CDS
AGGATTCTAGTTGGATTGCT+TGG 0.376715 3:-55447656 MsG0380014480.01.T01:CDS
TTCAAAGGCTTTGACATCTC+GGG 0.379944 3:-55446014 MsG0380014480.01.T01:CDS
AACATCTTTCATTTCTTAGT+TGG 0.385981 3:-55446071 MsG0380014480.01.T01:CDS
AAGATCACAAGTATAGAATA+TGG 0.394642 3:-55446097 MsG0380014480.01.T01:CDS
CGAGCCATTATTACTCCAAT+TGG 0.397550 3:+55446341 None:intergenic
CTTCAAAGGCTTTGACATCT+CGG 0.397926 3:-55446015 MsG0380014480.01.T01:CDS
TGCATGGTATTGAGGTTGTA+AGG 0.405558 3:+55447811 None:intergenic
TGGGGAACATTAATGCCAAT+TGG 0.432837 3:-55446356 MsG0380014480.01.T01:CDS
AAGAAATCAACTGCTATCAT+TGG 0.433184 3:-55445762 MsG0380014480.01.T01:three_prime_UTR
GGATTCTAGTTGGATTGCTT+GGG 0.433982 3:-55447655 MsG0380014480.01.T01:CDS
TTAATGTAAAGGATTCTAGT+TGG 0.435523 3:-55447665 MsG0380014480.01.T01:CDS
AAGAGATTTGAAGGACCAAC+AGG 0.436784 3:-55446311 MsG0380014480.01.T01:CDS
TTTGCCACCGGTTTATATAT+GGG 0.438090 3:-55446224 MsG0380014480.01.T01:CDS
GTTCCATATAGCTAAGATAA+TGG 0.440844 3:+55446040 None:intergenic
AAGGGTCGCATTATAGTGAT+TGG 0.442442 3:-55445847 MsG0380014480.01.T01:three_prime_UTR
ATAAAGAGAGGAATCTAAAA+CGG 0.445598 3:+55447737 None:intergenic
AAATCATCATGCTTCCATCT+AGG 0.450860 3:+55447469 None:intergenic
ATTCAAGAAAATTAATGTAA+AGG 0.450890 3:-55447676 MsG0380014480.01.T01:CDS
ATTTCGGGAACGTACCTAGA+TGG 0.453062 3:-55447483 MsG0380014480.01.T01:CDS
AAGTTGTTTCTTGGATTATG+TGG 0.455799 3:-55445920 MsG0380014480.01.T01:CDS
CGCCACTTGAAGAGATTTGA+AGG 0.462933 3:-55446320 MsG0380014480.01.T01:CDS
ATTGAGATCTCATGCTTTGA+CGG 0.466010 3:-55447367 MsG0380014480.01.T01:CDS
TCATGCATGGCAAGAAGGAT+TGG 0.469395 3:-55447406 MsG0380014480.01.T01:CDS
GCATTATTATTCGGCACTGC+TGG 0.475145 3:-55446248 MsG0380014480.01.T01:CDS
GAAGGATTGGTTTCTAGTGA+TGG 0.477780 3:-55447393 MsG0380014480.01.T01:CDS
CTTGGAGTATAGGGAAGATA+AGG 0.478729 3:-55445873 MsG0380014480.01.T01:exon
TGGAATCACTCTAATGACTT+TGG 0.479693 3:-55446162 MsG0380014480.01.T01:CDS
TTGGTTTCCCATATATAAAC+CGG 0.487033 3:+55446217 None:intergenic
ATAGGATCACAAGCTCTAAT+CGG 0.487311 3:-55447606 MsG0380014480.01.T01:CDS
TATAGGGAAGATAAGGCTAA+AGG 0.493954 3:-55445866 MsG0380014480.01.T01:exon
ATTGTCTCTCATAGTATTGG+TGG 0.498473 3:-55447297 MsG0380014480.01.T01:CDS
TTGAGATCTCATGCTTTGAC+GGG 0.498492 3:-55447366 MsG0380014480.01.T01:CDS
TAAAGAGAGGAATCTAAAAC+GGG 0.500061 3:+55447738 None:intergenic
ATAGGGAAGATAAGGCTAAA+GGG 0.505162 3:-55445865 MsG0380014480.01.T01:exon
GTATGAGTTGCATGGTATTG+AGG 0.523456 3:+55447803 None:intergenic
AATATTGTCTCTCATAGTAT+TGG 0.526250 3:-55447300 MsG0380014480.01.T01:CDS
GTTCCCGAAATATCATAAAC+CGG 0.529224 3:+55447495 None:intergenic
GTTAATCATGCATGGCAAGA+AGG 0.530329 3:-55447411 MsG0380014480.01.T01:CDS
TCAAAGGCTTTGACATCTCG+GGG 0.541301 3:-55446013 MsG0380014480.01.T01:CDS
AACACACCACATAGATGCGT+TGG 0.546301 3:-55446182 MsG0380014480.01.T01:CDS
GTGTGTTGTGAATTCCTGGT+TGG 0.550062 3:+55446198 None:intergenic
GTCCTTCAAATCTCTTCAAG+TGG 0.554301 3:+55446318 None:intergenic
TCAGTTTGGTTAATCATGCA+TGG 0.562684 3:-55447419 MsG0380014480.01.T01:CDS
GCTATATGGAACGTCTTCAA+AGG 0.568443 3:-55446029 MsG0380014480.01.T01:CDS
TTACCAAACTATGTTACAAG+AGG 0.591668 3:-55447532 MsG0380014480.01.T01:CDS
GTTAAAGTTCCAATAAAGAG+AGG 0.592426 3:+55447725 None:intergenic
GCCATAAACCCTAATTCGAA+TGG 0.593827 3:-55447633 MsG0380014480.01.T01:CDS
TTATATATGGGAAACCAACC+AGG 0.605661 3:-55446212 MsG0380014480.01.T01:CDS
ATATTGAAGATTATTTGGAA+AGG 0.617584 3:+55447779 None:intergenic
GAGAGGAATCTAAAACGGGT+AGG 0.618205 3:+55447742 None:intergenic
AAAGGCTTTGACATCTCGGG+GGG 0.622502 3:-55446011 MsG0380014480.01.T01:CDS
TGAAACCATGCTGATCCTGT+TGG 0.634428 3:+55446296 None:intergenic
GTGATTCCAACGCATCTATG+TGG 0.638600 3:+55446176 None:intergenic
TACCAAACTATGTTACAAGA+GGG 0.645077 3:-55447531 MsG0380014480.01.T01:CDS
ATCACAAGTATAGAATATGG+TGG 0.645971 3:-55446094 MsG0380014480.01.T01:CDS
AAGGACCAACAGGATCAGCA+TGG 0.646800 3:-55446301 MsG0380014480.01.T01:CDS
GTTTCCCATATATAAACCGG+TGG 0.648159 3:+55446220 None:intergenic
GGAAAGGTGTATGAGTTGCA+TGG 0.649424 3:+55447795 None:intergenic
CAAAGGCTTTGACATCTCGG+GGG 0.669440 3:-55446012 MsG0380014480.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTAATGTTATAAGTT+GGG - Chr3:55447231-55447250 MsG0380014480.01.T01:intron 10.0%
!!! TTTATATTTGAATTTGTTTT+GGG - Chr3:55446808-55446827 MsG0380014480.01.T01:intron 10.0%
!!! TTTTATATTTGAATTTGTTT+TGG - Chr3:55446807-55446826 MsG0380014480.01.T01:intron 10.0%
!! AATAAAAAAAAATCCAAAGA+TGG + Chr3:55446928-55446947 None:intergenic 15.0%
!! ATTAAAAAAAAAACTCATCT+AGG + Chr3:55446635-55446654 None:intergenic 15.0%
!! ATTCAAGAAAATTAATGTAA+AGG - Chr3:55445930-55445949 MsG0380014480.01.T01:CDS 15.0%
!! TAATTTCATACAAATAAGTT+TGG - Chr3:55446756-55446775 MsG0380014480.01.T01:intron 15.0%
!!! AGTTTTTTTTTTAATGGTTT+TGG - Chr3:55446640-55446659 MsG0380014480.01.T01:intron 15.0%
!!! CATTTTTTAATGTTATAAGT+TGG - Chr3:55447230-55447249 MsG0380014480.01.T01:intron 15.0%
!!! TAGATGAGTTTTTTTTTTAA+TGG - Chr3:55446634-55446653 MsG0380014480.01.T01:intron 15.0%
!!! TTTTTTAATGTTATAAGTTG+GGG - Chr3:55447232-55447251 MsG0380014480.01.T01:intron 15.0%
!! ATATTGAAGATTATTTGGAA+AGG + Chr3:55445830-55445849 None:intergenic 20.0%
!! CAATGTATAGCATTATTATT+CGG - Chr3:55447349-55447368 MsG0380014480.01.T01:CDS 20.0%
!! TAAAAAATGTTAGAGCAAAA+TGG + Chr3:55447118-55447137 None:intergenic 20.0%
!!! ACAGTTTGTTTTTTTTACAA+TGG - Chr3:55446667-55446686 MsG0380014480.01.T01:intron 20.0%
! AAAAAACCAATGCGTTAAAT+TGG - Chr3:55446518-55446537 MsG0380014480.01.T01:intron 25.0%
! AACATCTTTCATTTCTTAGT+TGG - Chr3:55447535-55447554 MsG0380014480.01.T01:CDS 25.0%
! AAGATCACAAGTATAGAATA+TGG - Chr3:55447509-55447528 MsG0380014480.01.T01:CDS 25.0%
! AATATTGTCTCTCATAGTAT+TGG - Chr3:55446306-55446325 MsG0380014480.01.T01:CDS 25.0%
! ACAATGCATAAAAATATGCA+AGG - Chr3:55446465-55446484 MsG0380014480.01.T01:intron 25.0%
! ATAAAGAGAGGAATCTAAAA+CGG + Chr3:55445872-55445891 None:intergenic 25.0%
! ATCGTAAGTAACTTCTTATT+TGG - Chr3:55446360-55446379 MsG0380014480.01.T01:CDS 25.0%
! ATTATCTATGCTTGTGTAAT+TGG - Chr3:55447634-55447653 MsG0380014480.01.T01:CDS 25.0%
! CTTGCATATTGAAGATTATT+TGG + Chr3:55445835-55445854 None:intergenic 25.0%
! TAGTGATTGGAATCAAAATT+TGG - Chr3:55447772-55447791 MsG0380014480.01.T01:CDS 25.0%
! TCATACAAATAAGTTTGGAA+CGG - Chr3:55446761-55446780 MsG0380014480.01.T01:intron 25.0%
! TTAATGTAAAGGATTCTAGT+TGG - Chr3:55445941-55445960 MsG0380014480.01.T01:CDS 25.0%
!! TTAACCAAACTGACATTTTT+AGG + Chr3:55446180-55446199 None:intergenic 25.0%
!! TTTTAGATTCCTCTCTTTAT+TGG - Chr3:55445872-55445891 MsG0380014480.01.T01:exon 25.0%
!!! AATATCGATTTCATGCTTTT+AGG - Chr3:55446899-55446918 MsG0380014480.01.T01:intron 25.0%
!!! ATTGGATGTTTGGTTTTAAT+TGG - Chr3:55447652-55447671 MsG0380014480.01.T01:CDS 25.0%
!!! TCTAACGCTATTTTGTTTAT+CGG - Chr3:55447821-55447840 MsG0380014480.01.T01:CDS 25.0%
!!! TTAACGCATTGGTTTTTTTT+TGG + Chr3:55446516-55446535 None:intergenic 25.0%
AACAAGAAGAGTAAAAAGCT+TGG - Chr3:55447715-55447734 MsG0380014480.01.T01:CDS 30.0%
AAGAAATCAACTGCTATCAT+TGG - Chr3:55447844-55447863 MsG0380014480.01.T01:CDS 30.0%
AATGCCAATTGGAGTAATAA+TGG - Chr3:55447261-55447280 MsG0380014480.01.T01:intron 30.0%
ACTTCCTAAAAATGTCAGTT+TGG - Chr3:55446173-55446192 MsG0380014480.01.T01:CDS 30.0%
AGAAGTTACTTACGATTCTT+AGG + Chr3:55446356-55446375 None:intergenic 30.0%
AGTAAAAAGCTTGGAGTATA+GGG - Chr3:55447724-55447743 MsG0380014480.01.T01:CDS 30.0%
ATCACAAGTATAGAATATGG+TGG - Chr3:55447512-55447531 MsG0380014480.01.T01:CDS 30.0%
CAACCATTATCTTAGCTATA+TGG - Chr3:55447563-55447582 MsG0380014480.01.T01:CDS 30.0%
CTATACTTGTGATCTTTCTT+TGG + Chr3:55447505-55447524 None:intergenic 30.0%
CTCATCTAGGAAAATCAATT+TGG + Chr3:55446622-55446641 None:intergenic 30.0%
GTTAAAGTTCCAATAAAGAG+AGG + Chr3:55445884-55445903 None:intergenic 30.0%
GTTCCATATAGCTAAGATAA+TGG + Chr3:55447569-55447588 None:intergenic 30.0%
TACCAAACTATGTTACAAGA+GGG - Chr3:55446075-55446094 MsG0380014480.01.T01:CDS 30.0%
TCTTCCGGTTTATGATATTT+CGG - Chr3:55446107-55446126 MsG0380014480.01.T01:CDS 30.0%
TTACCAAACTATGTTACAAG+AGG - Chr3:55446074-55446093 MsG0380014480.01.T01:CDS 30.0%
TTGGTTTCCCATATATAAAC+CGG + Chr3:55447392-55447411 None:intergenic 30.0%
TTTCTTGGATTATGTGGTTA+TGG - Chr3:55447692-55447711 MsG0380014480.01.T01:CDS 30.0%
TTTCTTTGGCCTAAGAAAAA+TGG + Chr3:55447491-55447510 None:intergenic 30.0%
! GGAGAAAATGTTCAAAGTTT+TGG - Chr3:55446261-55446280 MsG0380014480.01.T01:CDS 30.0%
! GTTGATGAAAGATGTGAAAA+AGG + Chr3:55445776-55445795 None:intergenic 30.0%
! TAAAGAGAGGAATCTAAAAC+GGG + Chr3:55445871-55445890 None:intergenic 30.0%
!! AAATAAGTTTGGAACGGTTT+TGG - Chr3:55446767-55446786 MsG0380014480.01.T01:intron 30.0%
!! AAGTTGTTTCTTGGATTATG+TGG - Chr3:55447686-55447705 MsG0380014480.01.T01:CDS 30.0%
!! TGAGTTTAGAAGTTGTTTCT+TGG - Chr3:55447677-55447696 MsG0380014480.01.T01:CDS 30.0%
!!! CATTGGTTTTTTTTTGGTAG+TGG + Chr3:55446510-55446529 None:intergenic 30.0%
!!! CTGTAAGAGCAAATCTTTTT+TGG + Chr3:55447025-55447044 None:intergenic 30.0%
!!! TGTTCAAAGTTTTGGAACTT+TGG - Chr3:55446269-55446288 MsG0380014480.01.T01:CDS 30.0%
!!! TTTGTGTTGCCATTTTTCTT+AGG - Chr3:55447479-55447498 MsG0380014480.01.T01:CDS 30.0%
AAATCATCATGCTTCCATCT+AGG + Chr3:55446140-55446159 None:intergenic 35.0%
ATAAAAATATGCAAGGTCCG+GGG - Chr3:55446472-55446491 MsG0380014480.01.T01:intron 35.0%
ATAGGGAAGATAAGGCTAAA+GGG - Chr3:55447741-55447760 MsG0380014480.01.T01:CDS 35.0%
ATCGGTTATCGAAACTTTGA+TGG - Chr3:55446018-55446037 MsG0380014480.01.T01:CDS 35.0%
ATTGAGATCTCATGCTTTGA+CGG - Chr3:55446239-55446258 MsG0380014480.01.T01:CDS 35.0%
CAACATCCAATTTAACGCAT+TGG + Chr3:55446527-55446546 None:intergenic 35.0%
CATAAAAATATGCAAGGTCC+GGG - Chr3:55446471-55446490 MsG0380014480.01.T01:intron 35.0%
CTATCATGCCATTCGAATTA+GGG + Chr3:55445984-55446003 None:intergenic 35.0%
CTTCCGGTTTATGATATTTC+GGG - Chr3:55446108-55446127 MsG0380014480.01.T01:CDS 35.0%
GAGTAAAAAGCTTGGAGTAT+AGG - Chr3:55447723-55447742 MsG0380014480.01.T01:CDS 35.0%
GCATAAAAATATGCAAGGTC+CGG - Chr3:55446470-55446489 MsG0380014480.01.T01:intron 35.0%
GTTCCCGAAATATCATAAAC+CGG + Chr3:55446114-55446133 None:intergenic 35.0%
TACCCTCTTGTAACATAGTT+TGG + Chr3:55446080-55446099 None:intergenic 35.0%
TATAGGGAAGATAAGGCTAA+AGG - Chr3:55447740-55447759 MsG0380014480.01.T01:CDS 35.0%
TCAGTTTGGTTAATCATGCA+TGG - Chr3:55446187-55446206 MsG0380014480.01.T01:CDS 35.0%
TGCTTGTGTAATTGGATGTT+TGG - Chr3:55447642-55447661 MsG0380014480.01.T01:CDS 35.0%
TGGAATCACTCTAATGACTT+TGG - Chr3:55447444-55447463 MsG0380014480.01.T01:CDS 35.0%
TTATATATGGGAAACCAACC+AGG - Chr3:55447394-55447413 MsG0380014480.01.T01:CDS 35.0%
! ATAGGATCACAAGCTCTAAT+CGG - Chr3:55446000-55446019 MsG0380014480.01.T01:CDS 35.0%
! ATTGTCTCTCATAGTATTGG+TGG - Chr3:55446309-55446328 MsG0380014480.01.T01:CDS 35.0%
! GGAACTTTGGATTTTCAATC+TGG - Chr3:55446282-55446301 MsG0380014480.01.T01:CDS 35.0%
! GTGAGAAGCAAAAGAAGTTT+TGG + Chr3:55445754-55445773 None:intergenic 35.0%
! TGCATGTACCTTTAGAAAGA+CGG + Chr3:55447212-55447231 None:intergenic 35.0%
!! TGCTTTTAGGAAACCATCTT+TGG - Chr3:55446912-55446931 MsG0380014480.01.T01:intron 35.0%
!! TTTGCCACCGGTTTATATAT+GGG - Chr3:55447382-55447401 MsG0380014480.01.T01:CDS 35.0%
!!! CATCGACAATGCTAGTTTTT+AGG + Chr3:55445906-55445925 None:intergenic 35.0%
!!! TTTTGCCACCGGTTTATATA+TGG - Chr3:55447381-55447400 MsG0380014480.01.T01:CDS 35.0%
AAGAGATTTGAAGGACCAAC+AGG - Chr3:55447295-55447314 MsG0380014480.01.T01:CDS 40.0%
AAGGGTCGCATTATAGTGAT+TGG - Chr3:55447759-55447778 MsG0380014480.01.T01:CDS 40.0%
CCTAATTCGAATGGCATGAT+AGG - Chr3:55445982-55446001 MsG0380014480.01.T01:CDS 40.0%
CCTATCATGCCATTCGAATT+AGG + Chr3:55445985-55446004 None:intergenic 40.0%
CGAGCCATTATTACTCCAAT+TGG + Chr3:55447268-55447287 None:intergenic 40.0%
CTAACACTCCGTCTTTCTAA+AGG - Chr3:55447201-55447220 MsG0380014480.01.T01:intron 40.0%
CTTGGAGTATAGGGAAGATA+AGG - Chr3:55447733-55447752 MsG0380014480.01.T01:CDS 40.0%
GCCATAAACCCTAATTCGAA+TGG - Chr3:55445973-55445992 MsG0380014480.01.T01:CDS 40.0%
GCCATTCGAATTAGGGTTTA+TGG + Chr3:55445977-55445996 None:intergenic 40.0%
GCTATATGGAACGTCTTCAA+AGG - Chr3:55447577-55447596 MsG0380014480.01.T01:CDS 40.0%
GTATGAGTTGCATGGTATTG+AGG + Chr3:55445806-55445825 None:intergenic 40.0%
GTCCTTCAAATCTCTTCAAG+TGG + Chr3:55447291-55447310 None:intergenic 40.0%
GTTAATCATGCATGGCAAGA+AGG - Chr3:55446195-55446214 MsG0380014480.01.T01:CDS 40.0%
GTTTCCCATATATAAACCGG+TGG + Chr3:55447389-55447408 None:intergenic 40.0%
TGGGGAACATTAATGCCAAT+TGG - Chr3:55447250-55447269 MsG0380014480.01.T01:intron 40.0%
TTGAGATCTCATGCTTTGAC+GGG - Chr3:55446240-55446259 MsG0380014480.01.T01:CDS 40.0%
! AGGATTCTAGTTGGATTGCT+TGG - Chr3:55445950-55445969 MsG0380014480.01.T01:CDS 40.0%
! CTTCAAAGGCTTTGACATCT+CGG - Chr3:55447591-55447610 MsG0380014480.01.T01:CDS 40.0%
! GGATTCTAGTTGGATTGCTT+GGG - Chr3:55445951-55445970 MsG0380014480.01.T01:CDS 40.0%
! TGCATGGTATTGAGGTTGTA+AGG + Chr3:55445798-55445817 None:intergenic 40.0%
! TTCAAAGGCTTTGACATCTC+GGG - Chr3:55447592-55447611 MsG0380014480.01.T01:CDS 40.0%
!! AGAGGGTAACATTAGTCTTC+CGG - Chr3:55446092-55446111 MsG0380014480.01.T01:CDS 40.0%
!! GAAGGATTGGTTTCTAGTGA+TGG - Chr3:55446213-55446232 MsG0380014480.01.T01:CDS 40.0%
!!! GGTTTTTTTTTGGTAGTGGC+CGG + Chr3:55446506-55446525 None:intergenic 40.0%
AACACACCACATAGATGCGT+TGG - Chr3:55447424-55447443 MsG0380014480.01.T01:CDS 45.0%
ATTTCGGGAACGTACCTAGA+TGG - Chr3:55446123-55446142 MsG0380014480.01.T01:CDS 45.0%
CGCCACTTGAAGAGATTTGA+AGG - Chr3:55447286-55447305 MsG0380014480.01.T01:CDS 45.0%
GCATTATTATTCGGCACTGC+TGG - Chr3:55447358-55447377 MsG0380014480.01.T01:CDS 45.0%
GTGATTCCAACGCATCTATG+TGG + Chr3:55447433-55447452 None:intergenic 45.0%
GTGTGTTGTGAATTCCTGGT+TGG + Chr3:55447411-55447430 None:intergenic 45.0%
TCATGCATGGCAAGAAGGAT+TGG - Chr3:55446200-55446219 MsG0380014480.01.T01:CDS 45.0%
TGAAACCATGCTGATCCTGT+TGG + Chr3:55447313-55447332 None:intergenic 45.0%
TGTGGTGTGTTGTGAATTCC+TGG + Chr3:55447415-55447434 None:intergenic 45.0%
! CTTCGTGAGTTTAGCTCAGT+TGG - Chr3:55446438-55446457 MsG0380014480.01.T01:intron 45.0%
! GAGAGGAATCTAAAACGGGT+AGG + Chr3:55445867-55445886 None:intergenic 45.0%
! GGAAAGGTGTATGAGTTGCA+TGG + Chr3:55445814-55445833 None:intergenic 45.0%
! GTGAGTTTAGCTCAGTTGGT+TGG - Chr3:55446442-55446461 MsG0380014480.01.T01:intron 45.0%
! TCAAAGGCTTTGACATCTCG+GGG - Chr3:55447593-55447612 MsG0380014480.01.T01:CDS 45.0%
!! TATTATTATTATTATTTGTT+TGG - Chr3:55447148-55447167 MsG0380014480.01.T01:intron 5.0%
AAGGACCAACAGGATCAGCA+TGG - Chr3:55447305-55447324 MsG0380014480.01.T01:CDS 50.0%
! AAAGGCTTTGACATCTCGGG+GGG - Chr3:55447595-55447614 MsG0380014480.01.T01:CDS 50.0%
! CAAAGGCTTTGACATCTCGG+GGG - Chr3:55447594-55447613 MsG0380014480.01.T01:CDS 50.0%
AAGGTCCGGGGTTCAAACTC+CGG - Chr3:55446484-55446503 MsG0380014480.01.T01:intron 55.0%
AGTGGCCGGAGTTTGAACCC+CGG + Chr3:55446492-55446511 None:intergenic 60.0%
!!! GGCACTGCTGGTTTTGCCAC+CGG - Chr3:55447370-55447389 MsG0380014480.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55445739 55447889 55445739 ID=MsG0380014480.01;Name=MsG0380014480.01
Chr3 mRNA 55445739 55447889 55445739 ID=MsG0380014480.01.T01;Parent=MsG0380014480.01;Name=MsG0380014480.01.T01;_AED=0.18;_eAED=0.18;_QI=0|1|0.5|1|1|1|2|145|381
Chr3 exon 55445739 55446405 55445739 ID=MsG0380014480.01.T01:exon:14018;Parent=MsG0380014480.01.T01
Chr3 exon 55447266 55447889 55447266 ID=MsG0380014480.01.T01:exon:14017;Parent=MsG0380014480.01.T01
Chr3 CDS 55447266 55447889 55447266 ID=MsG0380014480.01.T01:cds;Parent=MsG0380014480.01.T01
Chr3 CDS 55445884 55446405 55445884 ID=MsG0380014480.01.T01:cds;Parent=MsG0380014480.01.T01
Chr3 three_prime_UTR 55445739 55445883 55445739 ID=MsG0380014480.01.T01:three_prime_utr;Parent=MsG0380014480.01.T01
Gene Sequence

>MsG0380014480.01.T01

ATGGCTTCGATTCCAAAACTTCTTTTGCTTCTCACCTTTTTCACATCTTTCATCAACCTTACAACCTCAATACCATGCAACTCATACACCTTTCCAAATAATCTTCAATATGCAAGATGTAGTGACCTACCCGTTTTAGATTCCTCTCTTTATTGGAACTTTAACCTAAAAACTAGCATTGTCGATGTTGCATTCAAGAAAATTAATGTAAAGGATTCTAGTTGGATTGCTTGGGCCATAAACCCTAATTCGAATGGCATGATAGGATCACAAGCTCTAATCGGTTATCGAAACTTTGATGGAAGTTTCAAAGTCTATACTTCATCAATAACAACTTACCAAACTATGTTACAAGAGGGTAACATTAGTCTTCCGGTTTATGATATTTCGGGAACGTACCTAGATGGAAGCATGATGATTTTTGCAAGTTTGCAACTTCCTAAAAATGTCAGTTTGGTTAATCATGCATGGCAAGAAGGATTGGTTTCTAGTGATGGAAGATTGAGATCTCATGCTTTGACGGGAGAAAATGTTCAAAGTTTTGGAACTTTGGATTTTCAATCTGGAAATATTGTCTCTCATAGTATTGGTGGAAAATTGATGTCAAAAATCAACCTAAGAATCGTACATGCATTTTTTAATGTTATAAGTTGGGGAACATTAATGCCAATTGGAGTAATAATGGCTCGCCACTTGAAGAGATTTGAAGGACCAACAGGATCAGCATGGTTTCAATCGCATAGAGCATGTCAATGTATAGCATTATTATTCGGCACTGCTGGTTTTGCCACCGGTTTATATATGGGAAACCAACCAGGAATTCACAACACACCACATAGATGCGTTGGAATCACTCTAATGACTTTGGCACTTGTTCAAGTTTGTGTTGCCATTTTTCTTAGGCCAAAGAAAGATCACAAGTATAGAATATGGTGGAACATCTTTCATTTCTTAGTTGGTTACACAACCATTATCTTAGCTATATGGAACGTCTTCAAAGGCTTTGACATCTCGGGGGGAAATATCATGTTTAAAATTATCTATGCTTGTGTAATTGGATGTTTGGTTTTAATTGGTTTGAGTTTAGAAGTTGTTTCTTGGATTATGTGGTTATGGAACAAGAAGAGTAAAAAGCTTGGAGTATAG
Protein sequence

>MsG0380014480.01.T01

MASIPKLLLLLTFFTSFINLTTSIPCNSYTFPNNLQYARCSDLPVLDSSLYWNFNLKTSIVDVAFKKINVKDSSWIAWAINPNSNGMIGSQALIGYRNFDGSFKVYTSSITTYQTMLQEGNISLPVYDISGTYLDGSMMIFASLQLPKNVSLVNHAWQEGLVSSDGRLRSHALTGENVQSFGTLDFQSGNIVSHSIGGKLMSKINLRIVHAFFNVISWGTLMPIGVIMARHLKRFEGPTGSAWFQSHRACQCIALLFGTAGFATGLYMGNQPGIHNTPHRCVGITLMTLALVQVCVAIFLRPKKDHKYRIWWNIFHFLVGYTTIILAIWNVFKGFDISGGNIMFKIIYACVIGCLVLIGLSLEVVSWIMWLWNKKSKKLGV*