Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014475.01.T01 | XP_013460002.1 | 93.176 | 381 | 26 | 0 | 1 | 381 | 1 | 381 | 0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014475.01.T01 | Q9LYS9 | 39.44 | 393 | 220 | 8 | 1 | 379 | 3 | 391 | 9.73E-92 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014475.01.T01 | A0A072UY52 | 93.176 | 381 | 26 | 0 | 1 | 381 | 1 | 381 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013883.01 | MsG0380014475.01 | 0.800971 | 1.122237e-48 | 5.296779e-46 |
| MsG0380014475.01 | MsG0380014480.01 | 0.828936 | 6.812803e-55 | 6.870046e-52 |
| MsG0380014475.01 | MsG0580027332.01 | 0.804539 | 2.058169e-49 | 1.063929e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014475.01.T01 | MTR_3g058510 | 93.176 | 381 | 26 | 0 | 1 | 381 | 1 | 381 | 0.0 | 720 |
| MsG0380014475.01.T01 | MTR_7g098270 | 68.269 | 208 | 44 | 1 | 1 | 208 | 1 | 186 | 2.29e-94 | 282 |
| MsG0380014475.01.T01 | MTR_4g133620 | 40.779 | 385 | 209 | 10 | 6 | 377 | 3 | 381 | 3.58e-83 | 259 |
| MsG0380014475.01.T01 | MTR_2g026080 | 39.779 | 362 | 202 | 8 | 26 | 377 | 29 | 384 | 8.37e-76 | 240 |
| MsG0380014475.01.T01 | MTR_7g051910 | 36.957 | 368 | 224 | 6 | 1 | 367 | 3 | 363 | 8.93e-76 | 240 |
| MsG0380014475.01.T01 | MTR_8g009880 | 28.969 | 359 | 230 | 7 | 36 | 378 | 31 | 380 | 4.83e-53 | 181 |
| MsG0380014475.01.T01 | MTR_5g093520 | 31.606 | 386 | 242 | 10 | 2 | 371 | 10 | 389 | 1.12e-48 | 170 |
| MsG0380014475.01.T01 | MTR_5g097620 | 29.722 | 360 | 229 | 8 | 36 | 378 | 68 | 420 | 3.46e-46 | 164 |
| MsG0380014475.01.T01 | MTR_8g028075 | 29.900 | 301 | 193 | 8 | 71 | 367 | 267 | 553 | 2.86e-30 | 122 |
| MsG0380014475.01.T01 | MTR_8g011650 | 31.527 | 203 | 128 | 5 | 1 | 198 | 1 | 197 | 1.68e-26 | 106 |
| MsG0380014475.01.T01 | MTR_7g117375 | 26.573 | 286 | 195 | 7 | 87 | 368 | 104 | 378 | 4.73e-21 | 94.4 |
| MsG0380014475.01.T01 | MTR_5g097610 | 59.322 | 59 | 22 | 2 | 93 | 150 | 19 | 76 | 2.60e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380014475.01.T01 | AT5G47530 | 41.808 | 354 | 201 | 5 | 26 | 377 | 27 | 377 | 2.33e-93 | 285 |
| MsG0380014475.01.T01 | AT3G59070 | 39.440 | 393 | 220 | 8 | 1 | 379 | 3 | 391 | 9.92e-93 | 286 |
| MsG0380014475.01.T01 | AT5G35735 | 41.176 | 357 | 194 | 9 | 26 | 377 | 29 | 374 | 1.23e-87 | 271 |
| MsG0380014475.01.T01 | AT4G17280 | 39.142 | 373 | 219 | 6 | 7 | 375 | 15 | 383 | 4.39e-86 | 267 |
| MsG0380014475.01.T01 | AT3G25290 | 38.338 | 373 | 217 | 9 | 17 | 379 | 19 | 388 | 2.95e-79 | 249 |
| MsG0380014475.01.T01 | AT3G25290 | 38.338 | 373 | 217 | 9 | 17 | 379 | 19 | 388 | 2.95e-79 | 249 |
| MsG0380014475.01.T01 | AT4G12980 | 39.554 | 359 | 204 | 8 | 30 | 378 | 33 | 388 | 3.79e-76 | 241 |
| MsG0380014475.01.T01 | AT5G48750 | 40.167 | 239 | 139 | 3 | 7 | 244 | 15 | 250 | 1.24e-59 | 194 |
| MsG0380014475.01.T01 | AT2G04850 | 30.854 | 363 | 225 | 9 | 36 | 379 | 33 | 388 | 7.33e-52 | 178 |
| MsG0380014475.01.T01 | AT3G07570 | 28.926 | 363 | 207 | 15 | 22 | 364 | 32 | 363 | 1.35e-27 | 112 |
| MsG0380014475.01.T01 | AT3G07390 | 31.707 | 164 | 108 | 4 | 26 | 186 | 50 | 212 | 1.27e-18 | 85.5 |
| MsG0380014475.01.T01 | AT3G61750 | 25.278 | 360 | 214 | 15 | 19 | 364 | 52 | 370 | 1.34e-17 | 84.0 |
| MsG0380014475.01.T01 | AT3G61750 | 25.987 | 304 | 192 | 13 | 73 | 364 | 11 | 293 | 2.38e-17 | 82.4 |
Find 79 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTCGAATTAGGGTTTA+TGG | 0.103172 | 3:+55391862 | None:intergenic |
| CCTATCATGCCATTCGAATT+AGG | 0.133334 | 3:+55391854 | None:intergenic |
| CTTACATAGTTAAGATTATT+TGG | 0.138671 | 3:+55392004 | None:intergenic |
| ATTATCTATGCTTGTGTAAT+TGG | 0.156616 | 3:-55390138 | MsG0380014475.01.T01:CDS |
| GGAGAAAATGTTCAAAGTTT+TGG | 0.201378 | 3:-55391575 | MsG0380014475.01.T01:CDS |
| CTATACTTGTGATCTTTCTT+TGG | 0.217638 | 3:+55390270 | None:intergenic |
| CTTCCGGTTTATGATATTTC+GGG | 0.219832 | 3:-55391728 | MsG0380014475.01.T01:CDS |
| TCTTCCGGTTTATGATATTT+CGG | 0.274364 | 3:-55391729 | MsG0380014475.01.T01:CDS |
| CTATCATGCCATTCGAATTA+GGG | 0.275913 | 3:+55391855 | None:intergenic |
| GTGAGAAGCAAAAGAAGTTT+TGG | 0.277230 | 3:+55392085 | None:intergenic |
| CTTCAAAGGCTTTGACATCT+TGG | 0.282677 | 3:-55390181 | MsG0380014475.01.T01:CDS |
| CCTAATTCGAATGGCATGAT+AGG | 0.312177 | 3:-55391854 | MsG0380014475.01.T01:CDS |
| TGTGGTGTGTTGTGAATTCC+TGG | 0.319593 | 3:+55390360 | None:intergenic |
| TACCCTCTTGTAACATAGTT+TGG | 0.326972 | 3:+55391759 | None:intergenic |
| TTCAAAGGCTTTGACATCTT+GGG | 0.334020 | 3:-55390180 | MsG0380014475.01.T01:CDS |
| CAACCATTATCTTAGCTATA+TGG | 0.338799 | 3:-55390209 | MsG0380014475.01.T01:CDS |
| TGCTTGTGTAATTGGATGTT+TGG | 0.347772 | 3:-55390130 | MsG0380014475.01.T01:CDS |
| AGCATTCTAGTTGGATTGCT+TGG | 0.350650 | 3:-55391886 | MsG0380014475.01.T01:CDS |
| AATGCCAATTGGAGTAATAA+TGG | 0.352110 | 3:-55390511 | MsG0380014475.01.T01:CDS |
| TTTGTGTTGCAATTCTTCTT+AGG | 0.362209 | 3:-55390293 | MsG0380014475.01.T01:CDS |
| CAATGTATAGCATTATTATT+CGG | 0.371844 | 3:-55390423 | MsG0380014475.01.T01:CDS |
| AGAGGGTAACATTAGTCTTC+CGG | 0.375780 | 3:-55391744 | MsG0380014475.01.T01:CDS |
| AACATCTTTCATTTCTTAGT+TGG | 0.385981 | 3:-55390237 | MsG0380014475.01.T01:CDS |
| AAGATCACAAGTATAGAATA+TGG | 0.394642 | 3:-55390263 | MsG0380014475.01.T01:CDS |
| CGAGCCATTATTACTCCAAT+TGG | 0.397550 | 3:+55390507 | None:intergenic |
| TGCATGGTATTGAGGTTGTA+AGG | 0.405558 | 3:+55392041 | None:intergenic |
| ATCGGTCATCGAAACTTTGA+TGG | 0.413436 | 3:-55391818 | MsG0380014475.01.T01:CDS |
| GCATTCTAGTTGGATTGCTT+GGG | 0.433982 | 3:-55391885 | MsG0380014475.01.T01:CDS |
| AAGAGATTTGAAGGACCAAC+AGG | 0.436784 | 3:-55390477 | MsG0380014475.01.T01:CDS |
| TTTGCCACAGGTTTATATAT+GGG | 0.437505 | 3:-55390390 | MsG0380014475.01.T01:CDS |
| GTTCCATATAGCTAAGATAA+TGG | 0.440844 | 3:+55390206 | None:intergenic |
| TTAATGTAAAGCATTCTAGT+TGG | 0.445393 | 3:-55391895 | MsG0380014475.01.T01:CDS |
| ATAAAGAGAGGAATCTAAAA+CGG | 0.445598 | 3:+55391967 | None:intergenic |
| ATTTCGGGAATGTACCTAGA+TGG | 0.449222 | 3:-55391713 | MsG0380014475.01.T01:CDS |
| TATAGAGAAGATAAGGCTAA+AGG | 0.452832 | 3:-55390032 | MsG0380014475.01.T01:exon |
| CGCCACTTGAAGAGATTTGA+AGG | 0.462933 | 3:-55390486 | MsG0380014475.01.T01:CDS |
| ATTGAGATCTCATGCTTTGA+CGG | 0.466010 | 3:-55391597 | MsG0380014475.01.T01:CDS |
| CTTGGAGTATAGAGAAGATA+AGG | 0.466118 | 3:-55390039 | MsG0380014475.01.T01:exon |
| ATAGAGAAGATAAGGCTAAA+GGG | 0.472801 | 3:-55390031 | MsG0380014475.01.T01:exon |
| GCATTATTATTCGGCACTGC+TGG | 0.475145 | 3:-55390414 | MsG0380014475.01.T01:CDS |
| ATATCATCATGCTTCCATCT+AGG | 0.476811 | 3:+55391699 | None:intergenic |
| AAGTTGTTACTTGGATTATG+TGG | 0.478003 | 3:-55390086 | MsG0380014475.01.T01:CDS |
| TGGAATCACTCTAATGACTT+TGG | 0.479693 | 3:-55390328 | MsG0380014475.01.T01:CDS |
| AAGAAAACAACGGCTATCAT+TGG | 0.480091 | 3:-55389922 | MsG0380014475.01.T01:three_prime_UTR |
| TTACTTGGATTATGTGGCTA+TGG | 0.482118 | 3:-55390080 | MsG0380014475.01.T01:CDS |
| ATAGGATCACAAGCTCTAAT+CGG | 0.487311 | 3:-55391836 | MsG0380014475.01.T01:CDS |
| TCAAAGGCTTTGACATCTTG+GGG | 0.489687 | 3:-55390179 | MsG0380014475.01.T01:CDS |
| TGGGGAACACTAATGCCAAT+TGG | 0.491570 | 3:-55390522 | MsG0380014475.01.T01:CDS |
| GGTTGATGAACGATGTGAAA+AGG | 0.497671 | 3:+55392062 | None:intergenic |
| TTGAGATCTCATGCTTTGAC+GGG | 0.498492 | 3:-55391596 | MsG0380014475.01.T01:CDS |
| TAAAGAGAGGAATCTAAAAC+GGG | 0.500061 | 3:+55391968 | None:intergenic |
| TGAGTTTAGAAGTTGTTACT+TGG | 0.502335 | 3:-55390095 | MsG0380014475.01.T01:CDS |
| ATTCCCGAAATATCATAAAC+CGG | 0.504227 | 3:+55391725 | None:intergenic |
| ATTGTCTCTCAGAGTGTTGG+TGG | 0.512891 | 3:-55391527 | MsG0380014475.01.T01:CDS |
| GTTAATCATGCATGGCAAGA+AGG | 0.520710 | 3:-55391641 | MsG0380014475.01.T01:CDS |
| GTTGATGAACGATGTGAAAA+GGG | 0.530484 | 3:+55392063 | None:intergenic |
| GTATGAGTTGCATGGTATTG+AGG | 0.545058 | 3:+55392033 | None:intergenic |
| GAAGGAATGATTTCTAGTGA+TGG | 0.545182 | 3:-55391623 | MsG0380014475.01.T01:CDS |
| AACACACCACATAGATGCGT+TGG | 0.546301 | 3:-55390348 | MsG0380014475.01.T01:CDS |
| GTGTGTTGTGAATTCCTGGT+TGG | 0.550062 | 3:+55390364 | None:intergenic |
| TCAGTTTAGTTAATCATGCA+TGG | 0.550657 | 3:-55391649 | MsG0380014475.01.T01:CDS |
| GTCCTTCAAATCTCTTCAAG+TGG | 0.554301 | 3:+55390484 | None:intergenic |
| AACAAGAAGAGTAAAGAACT+TGG | 0.557520 | 3:-55390057 | MsG0380014475.01.T01:CDS |
| GCTATATGGAACGTCTTCAA+AGG | 0.568443 | 3:-55390195 | MsG0380014475.01.T01:CDS |
| TTACCAAACTATGTTACAAG+AGG | 0.591668 | 3:-55391762 | MsG0380014475.01.T01:CDS |
| GCCATAAACCCTAATTCGAA+TGG | 0.593827 | 3:-55391863 | MsG0380014475.01.T01:CDS |
| CAAAGGCTTTGACATCTTGG+GGG | 0.596772 | 3:-55390178 | MsG0380014475.01.T01:CDS |
| TGAAACCATGTTGATCCTGT+TGG | 0.599661 | 3:+55390462 | None:intergenic |
| TTATATATGGGAAACCAACC+AGG | 0.609312 | 3:-55390378 | MsG0380014475.01.T01:CDS |
| GAGAGGAATCTAAAACGGGT+AGG | 0.618205 | 3:+55391972 | None:intergenic |
| GTTTCCCATATATAAACCTG+TGG | 0.619858 | 3:+55390386 | None:intergenic |
| AATATTGTCTCTCAGAGTGT+TGG | 0.630955 | 3:-55391530 | MsG0380014475.01.T01:CDS |
| GTGATTCCAACGCATCTATG+TGG | 0.638600 | 3:+55390342 | None:intergenic |
| GCTATAGTTCCAATAAAGAG+AGG | 0.641758 | 3:+55391955 | None:intergenic |
| TACCAAACTATGTTACAAGA+GGG | 0.645077 | 3:-55391761 | MsG0380014475.01.T01:CDS |
| ATCACAAGTATAGAATATGG+TGG | 0.645971 | 3:-55390260 | MsG0380014475.01.T01:CDS |
| GGAAAAGTGTATGAGTTGCA+TGG | 0.649424 | 3:+55392025 | None:intergenic |
| AAGGACCAACAGGATCAACA+TGG | 0.677930 | 3:-55390467 | MsG0380014475.01.T01:CDS |
| TGTTTGTTGGAAGAAAACAA+CGG | 0.728476 | 3:-55389932 | MsG0380014475.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATCTTATATTTTTTTTTG+AGG | - | Chr3:55390882-55390901 | MsG0380014475.01.T01:intron | 10.0% |
| !!! | ATTTTTTAATGTTATAAGTT+GGG | - | Chr3:55391455-55391474 | MsG0380014475.01.T01:intron | 10.0% |
| !!! | TATCTTATATTTTTTTTTGA+GGG | - | Chr3:55390883-55390902 | MsG0380014475.01.T01:intron | 10.0% |
| !!! | CATTTTTTAATGTTATAAGT+TGG | - | Chr3:55391454-55391473 | MsG0380014475.01.T01:intron | 15.0% |
| !!! | TTTATATTTGAATCTGTTTT+GGG | - | Chr3:55390990-55391009 | MsG0380014475.01.T01:intron | 15.0% |
| !!! | TTTTATATTTGAATCTGTTT+TGG | - | Chr3:55390989-55391008 | MsG0380014475.01.T01:intron | 15.0% |
| !!! | TTTTTTAATGTTATAAGTTG+GGG | - | Chr3:55391456-55391475 | MsG0380014475.01.T01:intron | 15.0% |
| !! | ATAAAAAAAAAATCCAGAGA+TGG | + | Chr3:55391113-55391132 | None:intergenic | 20.0% |
| !! | CAATGTATAGCATTATTATT+CGG | - | Chr3:55391573-55391592 | MsG0380014475.01.T01:CDS | 20.0% |
| !! | CATTAAAAAAAAACTCATCT+AGG | + | Chr3:55390780-55390799 | None:intergenic | 20.0% |
| !! | CTTACATAGTTAAGATTATT+TGG | + | Chr3:55389995-55390014 | None:intergenic | 20.0% |
| !! | TTTATTATATTGTCATGATG+AGG | - | Chr3:55391049-55391068 | MsG0380014475.01.T01:intron | 20.0% |
| !!! | CTAGATGAGTTTTTTTTTAA+TGG | - | Chr3:55390778-55390797 | MsG0380014475.01.T01:intron | 20.0% |
| !!! | GAGTTTTTTTTTAATGGTTT+TGG | - | Chr3:55390784-55390803 | MsG0380014475.01.T01:intron | 20.0% |
| !!! | TTAACTAAACTGACATTTTT+AGG | + | Chr3:55390340-55390359 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTAGTAGTTTGT+AGG | - | Chr3:55391398-55391417 | MsG0380014475.01.T01:intron | 20.0% |
| !!! | TTTTTTTAATGGTTTTGGAT+AGG | - | Chr3:55390789-55390808 | MsG0380014475.01.T01:intron | 20.0% |
| ! | AACATCTTTCATTTCTTAGT+TGG | - | Chr3:55391759-55391778 | MsG0380014475.01.T01:CDS | 25.0% |
| ! | AAGATCACAAGTATAGAATA+TGG | - | Chr3:55391733-55391752 | MsG0380014475.01.T01:CDS | 25.0% |
| ! | ATAAAGAGAGGAATCTAAAA+CGG | + | Chr3:55390032-55390051 | None:intergenic | 25.0% |
| ! | ATTATCTATGCTTGTGTAAT+TGG | - | Chr3:55391858-55391877 | MsG0380014475.01.T01:CDS | 25.0% |
| ! | TCATACAAATCAGTTTGAAA+CGG | - | Chr3:55390943-55390962 | MsG0380014475.01.T01:intron | 25.0% |
| ! | TCATACTGTCAAGAAAAAAA+CGG | - | Chr3:55391219-55391238 | MsG0380014475.01.T01:intron | 25.0% |
| !! | TTAATGTAAAGCATTCTAGT+TGG | - | Chr3:55390101-55390120 | MsG0380014475.01.T01:CDS | 25.0% |
| !! | TTTTAGATTCCTCTCTTTAT+TGG | - | Chr3:55390032-55390051 | MsG0380014475.01.T01:exon | 25.0% |
| !!! | AATATCGATTTCATGCTTTT+AGG | - | Chr3:55391084-55391103 | MsG0380014475.01.T01:intron | 25.0% |
| !!! | ATTGGATGTTTGGTTTTAAT+TGG | - | Chr3:55391876-55391895 | MsG0380014475.01.T01:CDS | 25.0% |
| !!! | TTTAACGCTATTTTGTTTGT+TGG | - | Chr3:55392051-55392070 | MsG0380014475.01.T01:CDS | 25.0% |
| AACAAGAAGAGTAAAGAACT+TGG | - | Chr3:55391939-55391958 | MsG0380014475.01.T01:CDS | 30.0% | |
| AATGCCAATTGGAGTAATAA+TGG | - | Chr3:55391485-55391504 | MsG0380014475.01.T01:intron | 30.0% | |
| ATAGAGAAGATAAGGCTAAA+GGG | - | Chr3:55391965-55391984 | MsG0380014475.01.T01:CDS | 30.0% | |
| ATCACAAGTATAGAATATGG+TGG | - | Chr3:55391736-55391755 | MsG0380014475.01.T01:CDS | 30.0% | |
| ATTCCCGAAATATCATAAAC+CGG | + | Chr3:55390274-55390293 | None:intergenic | 30.0% | |
| CAACATCCAATTTAACACAT+TGG | + | Chr3:55390606-55390625 | None:intergenic | 30.0% | |
| CAACCATTATCTTAGCTATA+TGG | - | Chr3:55391787-55391806 | MsG0380014475.01.T01:CDS | 30.0% | |
| CTATACTTGTGATCTTTCTT+TGG | + | Chr3:55391729-55391748 | None:intergenic | 30.0% | |
| GTCAAACCAATGTGTTAAAT+TGG | - | Chr3:55390597-55390616 | MsG0380014475.01.T01:intron | 30.0% | |
| GTTCCATATAGCTAAGATAA+TGG | + | Chr3:55391793-55391812 | None:intergenic | 30.0% | |
| TACCAAACTATGTTACAAGA+GGG | - | Chr3:55390235-55390254 | MsG0380014475.01.T01:CDS | 30.0% | |
| TATAGAGAAGATAAGGCTAA+AGG | - | Chr3:55391964-55391983 | MsG0380014475.01.T01:CDS | 30.0% | |
| TCAGTTTAGTTAATCATGCA+TGG | - | Chr3:55390347-55390366 | MsG0380014475.01.T01:CDS | 30.0% | |
| TCTTCCGGTTTATGATATTT+CGG | - | Chr3:55390267-55390286 | MsG0380014475.01.T01:CDS | 30.0% | |
| TGAGTTTAGAAGTTGTTACT+TGG | - | Chr3:55391901-55391920 | MsG0380014475.01.T01:CDS | 30.0% | |
| TTACCAAACTATGTTACAAG+AGG | - | Chr3:55390234-55390253 | MsG0380014475.01.T01:CDS | 30.0% | |
| TTTGCCACAGGTTTATATAT+GGG | - | Chr3:55391606-55391625 | MsG0380014475.01.T01:CDS | 30.0% | |
| TTTGTGTTGCAATTCTTCTT+AGG | - | Chr3:55391703-55391722 | MsG0380014475.01.T01:CDS | 30.0% | |
| ! | AAGTTGTTACTTGGATTATG+TGG | - | Chr3:55391910-55391929 | MsG0380014475.01.T01:CDS | 30.0% |
| ! | ACAGTATGAGCAAATCTTTT+TGG | + | Chr3:55391208-55391227 | None:intergenic | 30.0% |
| ! | GGAGAAAATGTTCAAAGTTT+TGG | - | Chr3:55390421-55390440 | MsG0380014475.01.T01:CDS | 30.0% |
| ! | TAAAGAGAGGAATCTAAAAC+GGG | + | Chr3:55390031-55390050 | None:intergenic | 30.0% |
| ! | TGTTTGTTGGAAGAAAACAA+CGG | - | Chr3:55392064-55392083 | MsG0380014475.01.T01:CDS | 30.0% |
| ! | TTTTGCCACAGGTTTATATA+TGG | - | Chr3:55391605-55391624 | MsG0380014475.01.T01:CDS | 30.0% |
| !! | AAATCAGTTTGAAACGGTTT+TGG | - | Chr3:55390949-55390968 | MsG0380014475.01.T01:intron | 30.0% |
| !!! | TGTTCAAAGTTTTGGAACTT+TGG | - | Chr3:55390429-55390448 | MsG0380014475.01.T01:CDS | 30.0% |
| AAGAAAACAACGGCTATCAT+TGG | - | Chr3:55392074-55392093 | MsG0380014475.01.T01:CDS | 35.0% | |
| AATATTGTCTCTCAGAGTGT+TGG | - | Chr3:55390466-55390485 | MsG0380014475.01.T01:CDS | 35.0% | |
| ATATCATCATGCTTCCATCT+AGG | + | Chr3:55390300-55390319 | None:intergenic | 35.0% | |
| ATTGAGATCTCATGCTTTGA+CGG | - | Chr3:55390399-55390418 | MsG0380014475.01.T01:CDS | 35.0% | |
| CTATCATGCCATTCGAATTA+GGG | + | Chr3:55390144-55390163 | None:intergenic | 35.0% | |
| CTTCCGGTTTATGATATTTC+GGG | - | Chr3:55390268-55390287 | MsG0380014475.01.T01:CDS | 35.0% | |
| CTTGGAGTATAGAGAAGATA+AGG | - | Chr3:55391957-55391976 | MsG0380014475.01.T01:CDS | 35.0% | |
| GCTATAGTTCCAATAAAGAG+AGG | + | Chr3:55390044-55390063 | None:intergenic | 35.0% | |
| GTTTCCCATATATAAACCTG+TGG | + | Chr3:55391613-55391632 | None:intergenic | 35.0% | |
| TACCCTCTTGTAACATAGTT+TGG | + | Chr3:55390240-55390259 | None:intergenic | 35.0% | |
| TGCTTGTGTAATTGGATGTT+TGG | - | Chr3:55391866-55391885 | MsG0380014475.01.T01:CDS | 35.0% | |
| TGGAATCACTCTAATGACTT+TGG | - | Chr3:55391668-55391687 | MsG0380014475.01.T01:CDS | 35.0% | |
| TTACTTGGATTATGTGGCTA+TGG | - | Chr3:55391916-55391935 | MsG0380014475.01.T01:CDS | 35.0% | |
| TTATATATGGGAAACCAACC+AGG | - | Chr3:55391618-55391637 | MsG0380014475.01.T01:CDS | 35.0% | |
| ! | ATAGGATCACAAGCTCTAAT+CGG | - | Chr3:55390160-55390179 | MsG0380014475.01.T01:CDS | 35.0% |
| ! | GGAACTTTGGATTTTCAATC+TGG | - | Chr3:55390442-55390461 | MsG0380014475.01.T01:CDS | 35.0% |
| ! | GGTCGCATTACAGATATTTT+TGG | - | Chr3:55391986-55392005 | MsG0380014475.01.T01:CDS | 35.0% |
| ! | GTGAGAAGCAAAAGAAGTTT+TGG | + | Chr3:55389914-55389933 | None:intergenic | 35.0% |
| ! | GTTGATGAACGATGTGAAAA+GGG | + | Chr3:55389936-55389955 | None:intergenic | 35.0% |
| ! | TTCAAAGGCTTTGACATCTT+GGG | - | Chr3:55391816-55391835 | MsG0380014475.01.T01:CDS | 35.0% |
| !! | GAAGGAATGATTTCTAGTGA+TGG | - | Chr3:55390373-55390392 | MsG0380014475.01.T01:CDS | 35.0% |
| AAGAGATTTGAAGGACCAAC+AGG | - | Chr3:55391519-55391538 | MsG0380014475.01.T01:CDS | 40.0% | |
| ATCGGTCATCGAAACTTTGA+TGG | - | Chr3:55390178-55390197 | MsG0380014475.01.T01:CDS | 40.0% | |
| ATTTCGGGAATGTACCTAGA+TGG | - | Chr3:55390283-55390302 | MsG0380014475.01.T01:CDS | 40.0% | |
| CCTAATTCGAATGGCATGAT+AGG | - | Chr3:55390142-55390161 | MsG0380014475.01.T01:CDS | 40.0% | |
| CCTATCATGCCATTCGAATT+AGG | + | Chr3:55390145-55390164 | None:intergenic | 40.0% | |
| CGAGCCATTATTACTCCAAT+TGG | + | Chr3:55391492-55391511 | None:intergenic | 40.0% | |
| GCCATAAACCCTAATTCGAA+TGG | - | Chr3:55390133-55390152 | MsG0380014475.01.T01:CDS | 40.0% | |
| GCCATTCGAATTAGGGTTTA+TGG | + | Chr3:55390137-55390156 | None:intergenic | 40.0% | |
| GCTATATGGAACGTCTTCAA+AGG | - | Chr3:55391801-55391820 | MsG0380014475.01.T01:CDS | 40.0% | |
| GTATGAGTTGCATGGTATTG+AGG | + | Chr3:55389966-55389985 | None:intergenic | 40.0% | |
| GTCCTTCAAATCTCTTCAAG+TGG | + | Chr3:55391515-55391534 | None:intergenic | 40.0% | |
| GTTAATCATGCATGGCAAGA+AGG | - | Chr3:55390355-55390374 | MsG0380014475.01.T01:CDS | 40.0% | |
| TGAAACCATGTTGATCCTGT+TGG | + | Chr3:55391537-55391556 | None:intergenic | 40.0% | |
| TTGAGATCTCATGCTTTGAC+GGG | - | Chr3:55390400-55390419 | MsG0380014475.01.T01:CDS | 40.0% | |
| ! | AGCATTCTAGTTGGATTGCT+TGG | - | Chr3:55390110-55390129 | MsG0380014475.01.T01:CDS | 40.0% |
| ! | CTTCAAAGGCTTTGACATCT+TGG | - | Chr3:55391815-55391834 | MsG0380014475.01.T01:CDS | 40.0% |
| ! | GCATTCTAGTTGGATTGCTT+GGG | - | Chr3:55390111-55390130 | MsG0380014475.01.T01:CDS | 40.0% |
| ! | GGAAAAGTGTATGAGTTGCA+TGG | + | Chr3:55389974-55389993 | None:intergenic | 40.0% |
| ! | TCAAAGGCTTTGACATCTTG+GGG | - | Chr3:55391817-55391836 | MsG0380014475.01.T01:CDS | 40.0% |
| ! | TGCATGGTATTGAGGTTGTA+AGG | + | Chr3:55389958-55389977 | None:intergenic | 40.0% |
| ! | TGCATGTACCTTTAGAGAGA+CGG | + | Chr3:55391436-55391455 | None:intergenic | 40.0% |
| !! | AGAGGGTAACATTAGTCTTC+CGG | - | Chr3:55390252-55390271 | MsG0380014475.01.T01:CDS | 40.0% |
| !! | GGTTGATGAACGATGTGAAA+AGG | + | Chr3:55389937-55389956 | None:intergenic | 40.0% |
| !! | TGCTTTTAGGAAACCATCTC+TGG | - | Chr3:55391097-55391116 | MsG0380014475.01.T01:intron | 40.0% |
| !!! | ACATCGACAACGCTAGTTTT+TGG | + | Chr3:55390067-55390086 | None:intergenic | 40.0% |
| !!! | CATCGACAACGCTAGTTTTT+GGG | + | Chr3:55390066-55390085 | None:intergenic | 40.0% |
| AACACACCACATAGATGCGT+TGG | - | Chr3:55391648-55391667 | MsG0380014475.01.T01:CDS | 45.0% | |
| AAGGACCAACAGGATCAACA+TGG | - | Chr3:55391529-55391548 | MsG0380014475.01.T01:CDS | 45.0% | |
| CGCCACTTGAAGAGATTTGA+AGG | - | Chr3:55391510-55391529 | MsG0380014475.01.T01:CDS | 45.0% | |
| CTAACACTCCGTCTCTCTAA+AGG | - | Chr3:55391425-55391444 | MsG0380014475.01.T01:intron | 45.0% | |
| GCATTATTATTCGGCACTGC+TGG | - | Chr3:55391582-55391601 | MsG0380014475.01.T01:CDS | 45.0% | |
| GTGATTCCAACGCATCTATG+TGG | + | Chr3:55391657-55391676 | None:intergenic | 45.0% | |
| GTGTGTTGTGAATTCCTGGT+TGG | + | Chr3:55391635-55391654 | None:intergenic | 45.0% | |
| TGGGGAACACTAATGCCAAT+TGG | - | Chr3:55391474-55391493 | MsG0380014475.01.T01:intron | 45.0% | |
| TGTGGTGTGTTGTGAATTCC+TGG | + | Chr3:55391639-55391658 | None:intergenic | 45.0% | |
| ! | CAAAGGCTTTGACATCTTGG+GGG | - | Chr3:55391818-55391837 | MsG0380014475.01.T01:CDS | 45.0% |
| ! | GAGAGGAATCTAAAACGGGT+AGG | + | Chr3:55390027-55390046 | None:intergenic | 45.0% |
| !! | ATTGTCTCTCAGAGTGTTGG+TGG | - | Chr3:55390469-55390488 | MsG0380014475.01.T01:CDS | 45.0% |
| !! | AATAAAAATAAAAAACAAAT+AGG | + | Chr3:55390537-55390556 | None:intergenic | 5.0% |
| !! | ATTTATTATTATTATTTGTT+TGG | - | Chr3:55391372-55391391 | MsG0380014475.01.T01:intron | 5.0% |
| !!! | TTGTTTTTTTTTTTTTAAAA+GGG | - | Chr3:55390631-55390650 | MsG0380014475.01.T01:intron | 5.0% |
| !!! | TTTGTTTTTTTTTTTTTAAA+AGG | - | Chr3:55390630-55390649 | MsG0380014475.01.T01:intron | 5.0% |
| !!! | TTTTTTTTTTTTTTTTACAA+AGG | - | Chr3:55390819-55390838 | MsG0380014475.01.T01:intron | 5.0% |
| !!! | GGCACTGCTGGTTTTGCCAC+AGG | - | Chr3:55391594-55391613 | MsG0380014475.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 55389899 | 55392119 | 55389899 | ID=MsG0380014475.01;Name=MsG0380014475.01 |
| Chr3 | mRNA | 55389899 | 55392119 | 55389899 | ID=MsG0380014475.01.T01;Parent=MsG0380014475.01;Name=MsG0380014475.01.T01;_AED=0.13;_eAED=0.13;_QI=0|1|0.5|1|1|1|2|151|381 |
| Chr3 | exon | 55389899 | 55390571 | 55389899 | ID=MsG0380014475.01.T01:exon:14009;Parent=MsG0380014475.01.T01 |
| Chr3 | exon | 55391496 | 55392119 | 55391496 | ID=MsG0380014475.01.T01:exon:14008;Parent=MsG0380014475.01.T01 |
| Chr3 | CDS | 55391496 | 55392119 | 55391496 | ID=MsG0380014475.01.T01:cds;Parent=MsG0380014475.01.T01 |
| Chr3 | CDS | 55390050 | 55390571 | 55390050 | ID=MsG0380014475.01.T01:cds;Parent=MsG0380014475.01.T01 |
| Chr3 | three_prime_UTR | 55389899 | 55390049 | 55389899 | ID=MsG0380014475.01.T01:three_prime_utr;Parent=MsG0380014475.01.T01 |
| Gene Sequence |
| Protein sequence |
