AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014483.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014483.01.T01 MTR_5g097010 86.275 102 12 1 66 165 377 478 1.93e-50 175
MsG0380014483.01.T01 MTR_3g082150 79.412 102 19 1 66 165 376 477 5.31e-46 163
MsG0380014483.01.T01 MTR_8g007210 85.294 68 10 0 264 331 4 71 5.18e-36 127
MsG0380014483.01.T01 MTR_5g085090 80.000 70 14 0 262 331 24 93 2.68e-34 126
MsG0380014483.01.T01 MTR_8g009140 82.353 68 12 0 264 331 29 96 4.76e-33 122
MsG0380014483.01.T01 MTR_8g007200 79.412 68 14 0 264 331 30 97 8.66e-33 121
MsG0380014483.01.T01 MTR_8g007225 87.500 56 7 0 276 331 11 66 5.42e-29 108
MsG0380014483.01.T01 MTR_3g048940 70.312 64 19 0 268 331 14 77 1.51e-27 108
MsG0380014483.01.T01 MTR_4g066660 85.185 54 8 0 175 228 488 541 8.57e-22 96.3
MsG0380014483.01.T01 MTR_4g009290 81.481 54 10 0 175 228 186 239 7.43e-21 90.1
MsG0380014483.01.T01 MTR_7g111020 30.769 169 93 5 17 165 195 359 1.56e-20 92.0
MsG0380014483.01.T01 MTR_7g111020 30.769 169 93 5 17 165 327 491 1.89e-20 92.4
MsG0380014483.01.T01 MTR_3g116860 32.919 161 95 6 5 163 330 479 5.88e-19 87.8
MsG0380014483.01.T01 MTR_3g112070 37.624 101 61 1 65 163 391 491 7.91e-19 87.8
MsG0380014483.01.T01 MTR_4g131760 44.000 100 54 1 66 163 383 482 1.67e-17 83.6
MsG0380014483.01.T01 MTR_4g070430 30.435 161 99 5 5 163 340 489 2.10e-17 83.2
MsG0380014483.01.T01 MTR_7g104380 85.366 41 6 0 66 106 16 56 2.60e-16 77.4
MsG0380014483.01.T01 MTR_6g014000 70.588 51 13 1 112 160 270 320 1.11e-13 72.0
MsG0380014483.01.T01 MTR_3g061710 77.143 35 8 0 262 296 12 46 2.38e-11 61.6
MsG0380014483.01.T01 MTR_4g070430 27.211 147 94 5 5 149 340 475 5.30e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014483.01.T01 AT5G48300 76.471 102 22 1 66 165 382 483 1.33e-44 160
MsG0380014483.01.T01 AT1G27680 40.594 101 58 1 65 163 379 479 7.84e-20 90.5
MsG0380014483.01.T01 AT4G39210 34.161 161 93 5 5 163 333 482 6.56e-19 87.8
MsG0380014483.01.T01 AT4G39210 34.161 161 93 5 5 163 333 482 6.56e-19 87.8
MsG0380014483.01.T01 AT2G42780 63.492 63 23 0 264 326 8 70 1.21e-18 84.3
MsG0380014483.01.T01 AT2G42780 63.492 63 23 0 264 326 8 70 1.59e-18 84.7
MsG0380014483.01.T01 AT5G19220 41.000 100 57 1 66 163 384 483 5.08e-18 85.1
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT2G21590 30.435 161 99 5 5 163 335 484 1.68e-17 83.6
MsG0380014483.01.T01 AT1G05610 43.810 105 53 2 66 165 336 439 1.70e-16 80.5
MsG0380014483.01.T01 AT1G05610 43.810 105 53 2 66 165 342 445 2.17e-16 80.1
MsG0380014483.01.T01 AT2G31500 68.085 47 15 0 178 224 489 535 1.72e-13 71.6

Find 52 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATAATTTATCTGTTAT+AGG 0.295074 3:-55499972 None:intergenic
GGGCTGCATTCTTGCATATC+AGG 0.296848 3:+55495772 MsG0380014483.01.T01:CDS
CGGGGAAGGATGTGTGATTA+AGG 0.317043 3:+55495606 MsG0380014483.01.T01:CDS
TATTGAAGACACTTTGTTGA+TGG 0.366509 3:+55495804 MsG0380014483.01.T01:CDS
GTCCACTCAAGGGATGGATT+TGG 0.367530 3:+55499947 MsG0380014483.01.T01:CDS
TCCTTTCTCTTCATCATAAC+GGG 0.368071 3:-55499784 None:intergenic
TCCACTCAAGGGATGGATTT+GGG 0.370104 3:+55499948 MsG0380014483.01.T01:CDS
GACAAGAGGAGATTGGAAAA+TGG 0.375067 3:+55496954 MsG0380014483.01.T01:CDS
GATATCACTGATAGTGTTAT+CGG 0.379793 3:+55495586 MsG0380014483.01.T01:CDS
GGCAGTGTTCCACTTGGTAT+TGG 0.399314 3:+55496044 MsG0380014483.01.T01:CDS
CCGCATATTTGCAATTTCTC+AGG 0.402953 3:+55498394 MsG0380014483.01.T01:CDS
GTTGACAAGAATGCTAGAAT+TGG 0.404186 3:+55496095 MsG0380014483.01.T01:CDS
GCAAATATGCGGAGATCAAC+CGG 0.404284 3:-55498383 None:intergenic
GAGATAATTTATCTGTTATA+GGG 0.416645 3:-55499971 None:intergenic
ATCCTTTCTCTTCATCATAA+CGG 0.433160 3:-55499785 None:intergenic
AAATCTTCCATTCAGTGGTT+GGG 0.441064 3:+55495752 MsG0380014483.01.T01:CDS
TGATGAAGACAAGAGGAGAT+TGG 0.460581 3:+55496947 MsG0380014483.01.T01:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 3:+55495587 MsG0380014483.01.T01:CDS
AAAATCTTCCATTCAGTGGT+TGG 0.473513 3:+55495751 MsG0380014483.01.T01:CDS
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 3:+55492044 MsG0380014483.01.T01:CDS
ACTTCTCAATATGCATCAAC+TGG 0.507805 3:-55499926 None:intergenic
ATTGATAATGTAAAATACCT+TGG 0.515891 3:+55499843 MsG0380014483.01.T01:CDS
AATGCAGCCCAACCACTGAA+TGG 0.520984 3:-55495759 None:intergenic
CTTTGAAACAAAAGCAGTGA+TGG 0.523466 3:-55499757 None:intergenic
AATGTTTAAAGACAAATCTA+CGG 0.528586 3:+55497023 MsG0380014483.01.T01:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.528623 3:+55497024 MsG0380014483.01.T01:CDS
TAGTGGGAAAATGTATAAGC+CGG 0.542572 3:+55498364 MsG0380014483.01.T01:intron
TCCCGTTATGATGAAGAGAA+AGG 0.548076 3:+55499783 MsG0380014483.01.T01:CDS
CAACATTGAAGATTATGAAG+AGG 0.549840 3:+55491779 MsG0380014483.01.T01:CDS
CTGCAAAATCTTCCATTCAG+TGG 0.561130 3:+55495747 MsG0380014483.01.T01:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 3:+55492058 MsG0380014483.01.T01:CDS
AGAGAAAGGATCAAACACTT+TGG 0.569052 3:+55499797 MsG0380014483.01.T01:CDS
CATATTGAGAAGTCCACTCA+AGG 0.569445 3:+55499936 MsG0380014483.01.T01:CDS
TTATGAAGAGGATTTGAAGC+CGG 0.569826 3:+55491791 MsG0380014483.01.T01:CDS
CTGCATTCTTGCATATCAGG+AGG 0.573281 3:+55495775 MsG0380014483.01.T01:CDS
ACTGATAGTGTTATCGGGGA+AGG 0.575346 3:+55495592 MsG0380014483.01.T01:CDS
GCCCAAATCCATCCCTTGAG+TGG 0.577393 3:-55499949 None:intergenic
TGAGAAGTCCACTCAAGGGA+TGG 0.585491 3:+55499941 MsG0380014483.01.T01:CDS
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 3:+55491743 MsG0380014483.01.T01:CDS
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 3:+55491735 MsG0380014483.01.T01:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 3:-55495562 None:intergenic
GCTAAAGGCAGTGTTCCACT+TGG 0.607159 3:+55496038 MsG0380014483.01.T01:CDS
CCTGAGAAATTGCAAATATG+CGG 0.632530 3:-55498394 None:intergenic
AAGGCAATGATGAAGACAAG+AGG 0.640920 3:+55496940 MsG0380014483.01.T01:CDS
CAACATGACTAACATCTCCA+AGG 0.643990 3:-55499860 None:intergenic
TAGAATTGGAGAAAATGTGA+AGG 0.647495 3:+55496109 MsG0380014483.01.T01:CDS
ATATTGAGAAGTCCACTCAA+GGG 0.672926 3:+55499937 MsG0380014483.01.T01:CDS
TATCACTGATAGTGTTATCG+GGG 0.674328 3:+55495588 MsG0380014483.01.T01:CDS
GAGTTTCTGCCAATACCAAG+TGG 0.682922 3:-55496053 None:intergenic
AACAAAAGCAGTGATGGTGA+TGG 0.699621 3:-55499751 None:intergenic
AACTGGTCAAGTGTGCAGTG+AGG 0.727262 3:-55499909 None:intergenic
TGTTTAAAGACAAATCTACG+GGG 0.830736 3:+55497025 MsG0380014483.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAATTATTAAATTA+GGG - Chr3:55499343-55499362 None:intergenic 0.0%
!!! TAATTTAATAATTTTTTTAA+GGG + Chr3:55499343-55499362 MsG0380014483.01.T01:intron 0.0%
!! AAAAAAAAAAAAAATCTTCT+AGG - Chr3:55499451-55499470 None:intergenic 10.0%
!! ATATTTAATATTTATGATGT+TGG + Chr3:55492417-55492436 MsG0380014483.01.T01:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - Chr3:55496562-55496581 None:intergenic 10.0%
!!! CTTATTAATATTTTTTTTGA+AGG + Chr3:55497748-55497767 MsG0380014483.01.T01:intron 10.0%
!!! TAAGTTTTTATAATCTAAAA+CGG - Chr3:55497608-55497627 None:intergenic 10.0%
!!! TAATTATTTTTCCTTATTTT+TGG + Chr3:55499054-55499073 MsG0380014483.01.T01:intron 10.0%
!!! TAGAAGATTTTTTTTTTTTT+TGG + Chr3:55499450-55499469 MsG0380014483.01.T01:intron 10.0%
!!! TATAATTATTTTTCCTTTTT+TGG + Chr3:55499091-55499110 MsG0380014483.01.T01:intron 10.0%
!!! TTGGAATTTTAAAAAATATT+TGG + Chr3:55493626-55493645 MsG0380014483.01.T01:intron 10.0%
!!! TTTCTTCTATATATTTTTAA+TGG + Chr3:55494552-55494571 MsG0380014483.01.T01:intron 10.0%
!! AAAAAAATTTACACTTTAGT+AGG - Chr3:55492559-55492578 None:intergenic 15.0%
!! AATAATTGATTGAAAACTAT+AGG - Chr3:55491868-55491887 None:intergenic 15.0%
!! AATCTCCTATAAAAATATTT+GGG - Chr3:55498519-55498538 None:intergenic 15.0%
!! AGACAATCTTTATATATTTA+AGG - Chr3:55497714-55497733 None:intergenic 15.0%
!! ATAATGAAAAAAAATGAACT+TGG + Chr3:55496642-55496661 MsG0380014483.01.T01:intron 15.0%
!! ATACAAATCAAAACAAATAA+CGG + Chr3:55497881-55497900 MsG0380014483.01.T01:intron 15.0%
!! TAAAAAATATTTGGTTGATT+TGG + Chr3:55493635-55493654 MsG0380014483.01.T01:intron 15.0%
!! TAATTAAGTTACAAAATTCT+AGG + Chr3:55498244-55498263 MsG0380014483.01.T01:intron 15.0%
!! TATAAATCATAACACATATT+TGG - Chr3:55498665-55498684 None:intergenic 15.0%
!! TTAATTCAATTATGTTATGA+TGG + Chr3:55494046-55494065 MsG0380014483.01.T01:intron 15.0%
!! TTCTTAGTAAAAAAAATAGT+GGG - Chr3:55499996-55500015 None:intergenic 15.0%
!!! AATCTTATTTCCTTAAAAAT+AGG + Chr3:55499561-55499580 MsG0380014483.01.T01:intron 15.0%
!!! AATTAATTTGTCTTCAAATT+TGG + Chr3:55497360-55497379 MsG0380014483.01.T01:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + Chr3:55496891-55496910 MsG0380014483.01.T01:CDS 15.0%
!!! ATCTTATTTCCTTAAAAATA+GGG + Chr3:55499562-55499581 MsG0380014483.01.T01:intron 15.0%
!!! GTATTGATTTATTTATTTCT+GGG + Chr3:55492969-55492988 MsG0380014483.01.T01:intron 15.0%
!!! TATAAAATACCCTATTTTTA+AGG - Chr3:55499574-55499593 None:intergenic 15.0%
!! AACAATTCAAGATACAAAAA+AGG - Chr3:55491892-55491911 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG + Chr3:55494126-55494145 MsG0380014483.01.T01:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG + Chr3:55497023-55497042 MsG0380014483.01.T01:CDS 20.0%
!! AGTTGGTTAAATATACAAAA+AGG - Chr3:55495170-55495189 None:intergenic 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - Chr3:55492598-55492617 None:intergenic 20.0%
!! ATTCATCAAAGATATAGAAT+AGG - Chr3:55497487-55497506 None:intergenic 20.0%
!! ATTTAATGTTTAGTATCTGA+TGG - Chr3:55497797-55497816 None:intergenic 20.0%
!! CAATCTCCTATAAAAATATT+TGG - Chr3:55498520-55498539 None:intergenic 20.0%
!! CTTCTTAGTAAAAAAAATAG+TGG - Chr3:55499997-55500016 None:intergenic 20.0%
!! GAGATAATTTATCTGTTATA+GGG - Chr3:55499974-55499993 None:intergenic 20.0%
!! GTTATATTTATTCTCATGAA+AGG - Chr3:55499248-55499267 None:intergenic 20.0%
!! TAAAATCTAATTGATACTGA+TGG + Chr3:55493152-55493171 MsG0380014483.01.T01:intron 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + Chr3:55495322-55495341 MsG0380014483.01.T01:intron 20.0%
!! TCGAATTTGGAAAAAAAATT+TGG + Chr3:55493328-55493347 MsG0380014483.01.T01:intron 20.0%
!! TGGGGAAAATAAAATTAATT+CGG + Chr3:55498088-55498107 MsG0380014483.01.T01:intron 20.0%
!! TTACAAAATATTATATCGGA+CGG - Chr3:55498712-55498731 None:intergenic 20.0%
!! TTAGACTATAGTATTAACTA+AGG - Chr3:55499144-55499163 None:intergenic 20.0%
!! TTCATCAAAGATATAGAATA+GGG - Chr3:55497486-55497505 None:intergenic 20.0%
!! TTTCTATTCACATGTAATAA+AGG - Chr3:55494949-55494968 None:intergenic 20.0%
!! TTTGTTCTTTATGTATGTAA+TGG - Chr3:55494975-55494994 None:intergenic 20.0%
!!! AAGCTTTCTATTGATAATTT+TGG + Chr3:55493547-55493566 MsG0380014483.01.T01:intron 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + Chr3:55496895-55496914 MsG0380014483.01.T01:CDS 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + Chr3:55492266-55492285 MsG0380014483.01.T01:intron 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - Chr3:55496552-55496571 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - Chr3:55492766-55492785 None:intergenic 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - Chr3:55496168-55496187 None:intergenic 20.0%
!!! ATTAGAAAGGTTTTAAATCA+TGG - Chr3:55498586-55498605 None:intergenic 20.0%
!!! ATTGATAATGTAAAATACCT+TGG + Chr3:55499843-55499862 MsG0380014483.01.T01:CDS 20.0%
!!! GGGTATTTTATACTATATAT+AGG + Chr3:55499582-55499601 MsG0380014483.01.T01:intron 20.0%
!!! GGTATTGATTTATTTATTTC+TGG + Chr3:55492968-55492987 MsG0380014483.01.T01:intron 20.0%
!!! TAAATTTTGTCTATTTCCAA+TGG - Chr3:55493826-55493845 None:intergenic 20.0%
!!! TAATTTAGTGACTTTTTGAA+AGG + Chr3:55499377-55499396 MsG0380014483.01.T01:intron 20.0%
!!! TAATTTTTTTAAGGGCTAAT+TGG + Chr3:55499351-55499370 MsG0380014483.01.T01:intron 20.0%
!!! TGTTATTGAAATTTTGCAAA+TGG + Chr3:55492947-55492966 MsG0380014483.01.T01:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + Chr3:55493607-55493626 MsG0380014483.01.T01:intron 20.0%
!!! TTGTTTTTTCACACTAAAAA+AGG - Chr3:55499032-55499051 None:intergenic 20.0%
! AAAAAATGCTCTAATGTAGT+TGG + Chr3:55494103-55494122 MsG0380014483.01.T01:intron 25.0%
! AACTAGATAAATCTTTGATG+TGG + Chr3:55492831-55492850 MsG0380014483.01.T01:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - Chr3:55494001-55494020 None:intergenic 25.0%
! ACAAAAGGGTAAAATCATTT+CGG + Chr3:55497986-55498005 MsG0380014483.01.T01:intron 25.0%
! ACACCTTCAATAAAAAATGT+CGG - Chr3:55496373-55496392 None:intergenic 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - Chr3:55496249-55496268 None:intergenic 25.0%
! ATATAGGTTAAAAGCCATTA+GGG + Chr3:55499598-55499617 MsG0380014483.01.T01:intron 25.0%
! ATATTTATTCTCATGAAAGG+AGG - Chr3:55499245-55499264 None:intergenic 25.0%
! ATGTTTAAAGACAAATCTAC+GGG + Chr3:55497024-55497043 MsG0380014483.01.T01:CDS 25.0%
! CACTTGAAACCTTAAAATTA+GGG - Chr3:55498059-55498078 None:intergenic 25.0%
! CTAAAAACATACACAATCTA+AGG - Chr3:55493499-55493518 None:intergenic 25.0%
! CTCTTGTCTATTCATTTATT+AGG + Chr3:55498909-55498928 MsG0380014483.01.T01:intron 25.0%
! GACAAAATTTAACACGAAAT+AGG + Chr3:55493835-55493854 MsG0380014483.01.T01:intron 25.0%
! GGAGATAATTTATCTGTTAT+AGG - Chr3:55499975-55499994 None:intergenic 25.0%
! GGGAAAATAAAATTAATTCG+GGG + Chr3:55498090-55498109 MsG0380014483.01.T01:intron 25.0%
! GGGGAAAATAAAATTAATTC+GGG + Chr3:55498089-55498108 MsG0380014483.01.T01:intron 25.0%
! TAAATCTTTGATGTGGTATT+TGG + Chr3:55492838-55492857 MsG0380014483.01.T01:intron 25.0%
! TATATAGGTTAAAAGCCATT+AGG + Chr3:55499597-55499616 MsG0380014483.01.T01:intron 25.0%
! TATATCCATGTAACAAAAAC+TGG - Chr3:55492504-55492523 None:intergenic 25.0%
! TATTAAGCTTGACAAATTGT+TGG + Chr3:55496195-55496214 MsG0380014483.01.T01:intron 25.0%
! TCACTTGAAACCTTAAAATT+AGG - Chr3:55498060-55498079 None:intergenic 25.0%
! TCTATTCATTTATTAGGTCA+TGG + Chr3:55498915-55498934 MsG0380014483.01.T01:intron 25.0%
! TCTCCATTTGATAAAATAAG+TGG - Chr3:55498852-55498871 None:intergenic 25.0%
! TTAAGTTACAAAATTCTAGG+TGG + Chr3:55498247-55498266 MsG0380014483.01.T01:intron 25.0%
! TTGTTAAAGCTATCTAAATC+TGG - Chr3:55496586-55496605 None:intergenic 25.0%
! TTGTTGTGATTTAAATGAGT+TGG + Chr3:55491907-55491926 MsG0380014483.01.T01:intron 25.0%
! TTTAGAGAATCACATTAGAA+AGG - Chr3:55498599-55498618 None:intergenic 25.0%
!! AACAAACTCATTTTCTTTCA+AGG + Chr3:55498975-55498994 MsG0380014483.01.T01:intron 25.0%
!! AATGACATTTTCGTAATAAG+TGG + Chr3:55497394-55497413 MsG0380014483.01.T01:intron 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + Chr3:55494017-55494036 MsG0380014483.01.T01:intron 25.0%
!! ACTGAAAATCTATTTTGTAG+TGG + Chr3:55498347-55498366 MsG0380014483.01.T01:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + Chr3:55494612-55494631 MsG0380014483.01.T01:intron 25.0%
!! CTGAAAATCTATTTTGTAGT+GGG + Chr3:55498348-55498367 MsG0380014483.01.T01:intron 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + Chr3:55494011-55494030 MsG0380014483.01.T01:intron 25.0%
!! GTTTCAAGTGATAAAAAGTT+GGG + Chr3:55498069-55498088 MsG0380014483.01.T01:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + Chr3:55495480-55495499 MsG0380014483.01.T01:intron 25.0%
!! TTATTCCAGTTTTTGTTACA+TGG + Chr3:55492496-55492515 MsG0380014483.01.T01:intron 25.0%
!! TTTCAAGTGATAAAAAGTTG+GGG + Chr3:55498070-55498089 MsG0380014483.01.T01:intron 25.0%
!! TTTTGTTCACACCAAAAATA+AGG - Chr3:55499068-55499087 None:intergenic 25.0%
!! TTTTTCCAAATTCGAAAACT+CGG - Chr3:55493323-55493342 None:intergenic 25.0%
!!! ACTTATTTTATCAAATGGAG+AGG + Chr3:55498851-55498870 MsG0380014483.01.T01:intron 25.0%
!!! ACTTTAATTTTTGTGGTTTG+TGG + Chr3:55493248-55493267 MsG0380014483.01.T01:intron 25.0%
!!! AGAAGCTGATAAAAGTTTTT+TGG + Chr3:55496013-55496032 MsG0380014483.01.T01:intron 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + Chr3:55496921-55496940 MsG0380014483.01.T01:CDS 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + Chr3:55495457-55495476 MsG0380014483.01.T01:intron 25.0%
!!! ATCTAAAACGGTACTAATTT+TGG - Chr3:55497596-55497615 None:intergenic 25.0%
!!! CAACTCCCAAATATTTTTAT+AGG + Chr3:55498511-55498530 MsG0380014483.01.T01:intron 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + Chr3:55495481-55495500 MsG0380014483.01.T01:intron 25.0%
!!! CTATTGATAATTTTGGTTTG+TGG + Chr3:55493554-55493573 MsG0380014483.01.T01:intron 25.0%
!!! CTTCCACTTATTTTATCAAA+TGG + Chr3:55498846-55498865 MsG0380014483.01.T01:intron 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - Chr3:55496169-55496188 None:intergenic 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG + Chr3:55492974-55492993 MsG0380014483.01.T01:intron 25.0%
!!! GTAACAGACTTTAATTTTTG+TGG + Chr3:55493241-55493260 MsG0380014483.01.T01:intron 25.0%
!!! TCTAAAACGGTACTAATTTT+GGG - Chr3:55497595-55497614 None:intergenic 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - Chr3:55492821-55492840 None:intergenic 25.0%
AACCATCATACACATAAGAA+AGG - Chr3:55493016-55493035 None:intergenic 30.0%
ACAAATCCTTCTCTATCAAT+TGG - Chr3:55493695-55493714 None:intergenic 30.0%
ACTGAATTTCAAATTGCATG+TGG + Chr3:55497071-55497090 MsG0380014483.01.T01:intron 30.0%
AGAAAATCAATGTTGCAGTT+AGG - Chr3:55495982-55496001 None:intergenic 30.0%
AGACCTACTGTTAGAAAAAA+TGG + Chr3:55493757-55493776 MsG0380014483.01.T01:intron 30.0%
ATAAGTCTACTTCAATTGAG+AGG - Chr3:55495124-55495143 None:intergenic 30.0%
ATCCTTTCTCTTCATCATAA+CGG - Chr3:55499788-55499807 None:intergenic 30.0%
ATTAGGTCATGGTTTCATTT+AGG + Chr3:55498926-55498945 MsG0380014483.01.T01:intron 30.0%
ATTTGGGAGTTGACTAATTA+AGG - Chr3:55498503-55498522 None:intergenic 30.0%
CAAACCAATTTGTAGATAGT+TGG - Chr3:55497956-55497975 None:intergenic 30.0%
CAACATTGAAGATTATGAAG+AGG + Chr3:55491779-55491798 MsG0380014483.01.T01:CDS 30.0%
CTGAATTTCAAATTGCATGT+GGG + Chr3:55497072-55497091 MsG0380014483.01.T01:intron 30.0%
GAAGGAAATCAGGTTATATT+CGG - Chr3:55496507-55496526 None:intergenic 30.0%
GATTGACGATACTATAAACT+TGG + Chr3:55498628-55498647 MsG0380014483.01.T01:intron 30.0%
GGTCTATGATGGTTAAAATT+TGG + Chr3:55492921-55492940 MsG0380014483.01.T01:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG + Chr3:55493925-55493944 MsG0380014483.01.T01:intron 30.0%
TAAGTCTACTTCAATTGAGA+GGG - Chr3:55495123-55495142 None:intergenic 30.0%
TACAAACCAATTGATAGAGA+AGG + Chr3:55493686-55493705 MsG0380014483.01.T01:intron 30.0%
TAGAATTGGAGAAAATGTGA+AGG + Chr3:55496109-55496128 MsG0380014483.01.T01:CDS 30.0%
TATAACCTGATTTCCTTCAT+AGG + Chr3:55496509-55496528 MsG0380014483.01.T01:intron 30.0%
TATGATATGTACTCAGAACT+TGG - Chr3:55497106-55497125 None:intergenic 30.0%
TATTGAAGACACTTTGTTGA+TGG + Chr3:55495804-55495823 MsG0380014483.01.T01:CDS 30.0%
TCAAAGTACAATTGTTGTGA+TGG + Chr3:55498791-55498810 MsG0380014483.01.T01:intron 30.0%
TCAAGCTTAATATGAGAAGA+TGG - Chr3:55496187-55496206 None:intergenic 30.0%
TCAATAGAAAGCTTGAACAA+AGG - Chr3:55493541-55493560 None:intergenic 30.0%
TCGCAGTTTATTATTAGTGT+TGG + Chr3:55496443-55496462 MsG0380014483.01.T01:intron 30.0%
TGAATTTCAAATTGCATGTG+GGG + Chr3:55497073-55497092 MsG0380014483.01.T01:intron 30.0%
TGGTACTAATGTGCATTTAA+AGG - Chr3:55495096-55495115 None:intergenic 30.0%
TGGTGGAATTTAAGAAATGT+TGG + Chr3:55493721-55493740 MsG0380014483.01.T01:intron 30.0%
TGTGTATGATGGTTCAAATT+TGG + Chr3:55493022-55493041 MsG0380014483.01.T01:intron 30.0%
TGTTTAAAGACAAATCTACG+GGG + Chr3:55497025-55497044 MsG0380014483.01.T01:CDS 30.0%
TTCATAACACATTTAACCCA+AGG - Chr3:55494331-55494350 None:intergenic 30.0%
TTCTCCAACTATCTACAAAT+TGG + Chr3:55497949-55497968 MsG0380014483.01.T01:intron 30.0%
TTGAGTGAAAATTGAACCAT+TGG + Chr3:55493807-55493826 MsG0380014483.01.T01:intron 30.0%
! AACAATTGCTCTTTTGATAC+GGG - Chr3:55496078-55496097 None:intergenic 30.0%
! AGAGAAGGATTTGTTTGTTA+TGG + Chr3:55493701-55493720 MsG0380014483.01.T01:intron 30.0%
! ATATCACTGATAGTGTTATC+GGG + Chr3:55495587-55495606 MsG0380014483.01.T01:CDS 30.0%
! CAACAATTGCTCTTTTGATA+CGG - Chr3:55496079-55496098 None:intergenic 30.0%
! GATATCACTGATAGTGTTAT+CGG + Chr3:55495586-55495605 MsG0380014483.01.T01:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - Chr3:55496147-55496166 None:intergenic 30.0%
! GGTTTCAAGTGATAAAAAGT+TGG + Chr3:55498068-55498087 MsG0380014483.01.T01:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - Chr3:55493188-55493207 None:intergenic 30.0%
! GTTGTTGTCACCTAATTTTA+AGG + Chr3:55498047-55498066 MsG0380014483.01.T01:intron 30.0%
! TAGAATAGGGAAGTGTATAA+AGG - Chr3:55497473-55497492 None:intergenic 30.0%
! TCAACTCTTTCAGTTTTTCA+TGG + Chr3:55491975-55491994 MsG0380014483.01.T01:CDS 30.0%
! TGAGAGTGTAAATGGAAAAT+AGG + Chr3:55497208-55497227 MsG0380014483.01.T01:intron 30.0%
! TGGCATACAAAGGATTTTTA+TGG + Chr3:55491995-55492014 MsG0380014483.01.T01:CDS 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + Chr3:55493655-55493674 MsG0380014483.01.T01:intron 30.0%
! TGTGTTTTTCACACCAAAAA+AGG - Chr3:55499107-55499126 None:intergenic 30.0%
! TTGTGATTTAAATGAGTTGG+AGG + Chr3:55491910-55491929 MsG0380014483.01.T01:intron 30.0%
!! AAAGAACAAAAAGTGTTGTC+AGG + Chr3:55494985-55495004 MsG0380014483.01.T01:intron 30.0%
!! AAGAAGTGTTTCTTCATTCA+TGG + Chr3:55495042-55495061 MsG0380014483.01.T01:intron 30.0%
!! AGAAAATGAGTTTGTTGACT+AGG - Chr3:55498971-55498990 None:intergenic 30.0%
!! ATCTTGCTATTATGATGAGA+AGG + Chr3:55499704-55499723 MsG0380014483.01.T01:intron 30.0%
!! GAAAATGAGTTTGTTGACTA+GGG - Chr3:55498970-55498989 None:intergenic 30.0%
!! TAGTTCTGATTATTGTGATC+TGG + Chr3:55492147-55492166 MsG0380014483.01.T01:intron 30.0%
!! TCACATGTAATAAAGGTGTT+TGG - Chr3:55494942-55494961 None:intergenic 30.0%
!! TCTTGCTATTATGATGAGAA+GGG + Chr3:55499705-55499724 MsG0380014483.01.T01:intron 30.0%
!!! AAAAGTTTTTTGGCTGCTAA+AGG + Chr3:55496023-55496042 MsG0380014483.01.T01:CDS 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG + Chr3:55494735-55494754 MsG0380014483.01.T01:intron 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + Chr3:55494658-55494677 MsG0380014483.01.T01:intron 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG + Chr3:55494734-55494753 MsG0380014483.01.T01:intron 30.0%
!!! TGACCATTTTTTCTAACAGT+AGG - Chr3:55493763-55493782 None:intergenic 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + Chr3:55493510-55493529 MsG0380014483.01.T01:intron 30.0%
!!! TTGATAATTTTGGTTTGTGG+TGG + Chr3:55493557-55493576 MsG0380014483.01.T01:intron 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + Chr3:55496376-55496395 MsG0380014483.01.T01:intron 30.0%
AAAAAACCTTACCATCGCTA+AGG - Chr3:55492072-55492091 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG + Chr3:55495751-55495770 MsG0380014483.01.T01:CDS 35.0%
AAACATAGATTGCCTTCTTG+CGG + Chr3:55496300-55496319 MsG0380014483.01.T01:intron 35.0%
AAACATAGTTGCAAACTCCA+AGG - Chr3:55494870-55494889 None:intergenic 35.0%
AAATCTTCCATTCAGTGGTT+GGG + Chr3:55495752-55495771 MsG0380014483.01.T01:CDS 35.0%
AACACATTTAACCCAAGGTA+AGG - Chr3:55494326-55494345 None:intergenic 35.0%
AACATAGTTGCAAACTCCAA+GGG - Chr3:55494869-55494888 None:intergenic 35.0%
AACGAAGAACAACATAGAGA+TGG - Chr3:55494764-55494783 None:intergenic 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + Chr3:55491743-55491762 MsG0380014483.01.T01:CDS 35.0%
ACTTCTCAATATGCATCAAC+TGG - Chr3:55499929-55499948 None:intergenic 35.0%
AGAGAAAGGATCAAACACTT+TGG + Chr3:55499797-55499816 MsG0380014483.01.T01:CDS 35.0%
ATATTGAGAAGTCCACTCAA+GGG + Chr3:55499937-55499956 MsG0380014483.01.T01:CDS 35.0%
ATGCTAGAACTGATGATTCA+TGG - Chr3:55494794-55494813 None:intergenic 35.0%
ATTTAACACGAAATAGGCTC+TGG + Chr3:55493841-55493860 MsG0380014483.01.T01:intron 35.0%
CCTGAGAAATTGCAAATATG+CGG - Chr3:55498397-55498416 None:intergenic 35.0%
CGATTGCTCGATTTATAATC+AGG - Chr3:55497547-55497566 None:intergenic 35.0%
CGCATGGAGTATAAGAAAAT+TGG + Chr3:55492365-55492384 MsG0380014483.01.T01:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + Chr3:55491950-55491969 MsG0380014483.01.T01:intron 35.0%
CTCACATGAAAGCTAACAAT+TGG + Chr3:55495191-55495210 MsG0380014483.01.T01:intron 35.0%
GAACTCTTTGCAACATTCAA+TGG + Chr3:55498277-55498296 MsG0380014483.01.T01:intron 35.0%
GAATTTCAAATTGCATGTGG+GGG + Chr3:55497074-55497093 MsG0380014483.01.T01:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + Chr3:55493471-55493490 MsG0380014483.01.T01:intron 35.0%
GCTTTGCTTATTATGCATTC+AGG + Chr3:55492455-55492474 MsG0380014483.01.T01:intron 35.0%
GTGATTCTCTAAACTCAACA+TGG + Chr3:55498606-55498625 MsG0380014483.01.T01:intron 35.0%
GTTGACAAGAATGCTAGAAT+TGG + Chr3:55496095-55496114 MsG0380014483.01.T01:CDS 35.0%
TAGTGGGAAAATGTATAAGC+CGG + Chr3:55498364-55498383 MsG0380014483.01.T01:intron 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - Chr3:55495538-55495557 None:intergenic 35.0%
TATGGAAAACTCTTCGTGTA+AGG + Chr3:55494491-55494510 MsG0380014483.01.T01:intron 35.0%
TCCTTTCTCTTCATCATAAC+GGG - Chr3:55499787-55499806 None:intergenic 35.0%
TGCCTTTCTTATGTGTATGA+TGG + Chr3:55493011-55493030 MsG0380014483.01.T01:intron 35.0%
TGTTCACATCAGTTTGCAAT+AGG + Chr3:55493968-55493987 MsG0380014483.01.T01:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG + Chr3:55493048-55493067 MsG0380014483.01.T01:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - Chr3:55492551-55492570 None:intergenic 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + Chr3:55496519-55496538 MsG0380014483.01.T01:intron 35.0%
! AAAACGGTACTAATTTTGGG+AGG - Chr3:55497592-55497611 None:intergenic 35.0%
! AATCCTTGTCATTTCAATCC+GGG - Chr3:55494159-55494178 None:intergenic 35.0%
! ACAATTGTTGTGATGGAGAA+GGG + Chr3:55498798-55498817 MsG0380014483.01.T01:intron 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + Chr3:55494278-55494297 MsG0380014483.01.T01:intron 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + Chr3:55494793-55494812 MsG0380014483.01.T01:intron 35.0%
! ATGACAACAGCAGATTTTGA+TGG + Chr3:55496675-55496694 MsG0380014483.01.T01:intron 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - Chr3:55495743-55495762 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + Chr3:55492349-55492368 MsG0380014483.01.T01:intron 35.0%
! CAATCCTTGTCATTTCAATC+CGG - Chr3:55494160-55494179 None:intergenic 35.0%
! CAGTTTTTCATGGCATACAA+AGG + Chr3:55491985-55492004 MsG0380014483.01.T01:CDS 35.0%
! CATCTCAGTCCCTAATTTTA+AGG + Chr3:55498188-55498207 MsG0380014483.01.T01:intron 35.0%
! GACATCTTTTTCTCTTCTGT+TGG + Chr3:55492697-55492716 MsG0380014483.01.T01:intron 35.0%
! GTACAGTTTGAGAGTGTAAA+TGG + Chr3:55497200-55497219 MsG0380014483.01.T01:intron 35.0%
! GTGGTTTGTGGTTAATGTTA+AGG + Chr3:55493260-55493279 MsG0380014483.01.T01:intron 35.0%
! TACAATTGTTGTGATGGAGA+AGG + Chr3:55498797-55498816 MsG0380014483.01.T01:intron 35.0%
! TAGATGCAGCTCATTTTCAT+TGG + Chr3:55495931-55495950 MsG0380014483.01.T01:intron 35.0%
! TATCACTGATAGTGTTATCG+GGG + Chr3:55495588-55495607 MsG0380014483.01.T01:CDS 35.0%
! TGAGTTGGAGGAATTATTTC+AGG + Chr3:55491922-55491941 MsG0380014483.01.T01:intron 35.0%
! TTATGAAGAGGATTTGAAGC+CGG + Chr3:55491791-55491810 MsG0380014483.01.T01:CDS 35.0%
! TTCAACCGAGTTTTCGAATT+TGG + Chr3:55493315-55493334 MsG0380014483.01.T01:intron 35.0%
! TTCCTTCATTTGTTGCAAAG+TGG + Chr3:55497431-55497450 MsG0380014483.01.T01:intron 35.0%
!! ACAGCAGATTTTGATGGAAA+TGG + Chr3:55496681-55496700 MsG0380014483.01.T01:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + Chr3:55495949-55495968 MsG0380014483.01.T01:intron 35.0%
!! CATCACTGCTTTTGTTTCAA+AGG + Chr3:55499758-55499777 MsG0380014483.01.T01:CDS 35.0%
!! CTGTTTCTATGTATGCTTTG+AGG + Chr3:55499203-55499222 MsG0380014483.01.T01:intron 35.0%
!! CTTTGAAACAAAAGCAGTGA+TGG - Chr3:55499760-55499779 None:intergenic 35.0%
!! GAAGGATTTGTTTGTTATGG+TGG + Chr3:55493704-55493723 MsG0380014483.01.T01:intron 35.0%
!! TCTACAAATTGGTTTGCTTG+CGG + Chr3:55497960-55497979 MsG0380014483.01.T01:intron 35.0%
!! TTAGTGACTTTTTGAAAGGC+AGG + Chr3:55499381-55499400 MsG0380014483.01.T01:intron 35.0%
!!! ATAATTTTGGTTTGTGGTGG+AGG + Chr3:55493560-55493579 MsG0380014483.01.T01:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + Chr3:55496367-55496386 MsG0380014483.01.T01:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + Chr3:55493389-55493408 MsG0380014483.01.T01:intron 35.0%
AACCATCATAGACCAGTCAT+TGG - Chr3:55492915-55492934 None:intergenic 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + Chr3:55494206-55494225 MsG0380014483.01.T01:intron 40.0%
AAGCAGTGGATCGAAAACAA+AGG - Chr3:55499671-55499690 None:intergenic 40.0%
AAGGCAATGATGAAGACAAG+AGG + Chr3:55496940-55496959 MsG0380014483.01.T01:CDS 40.0%
ACATAGTTGCAAACTCCAAG+GGG - Chr3:55494868-55494887 None:intergenic 40.0%
ACCATCATAGACCAGTCATT+GGG - Chr3:55492914-55492933 None:intergenic 40.0%
ACTTCAATTGAGAGGGAGTA+TGG - Chr3:55495116-55495135 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - Chr3:55496241-55496260 None:intergenic 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + Chr3:55491735-55491754 MsG0380014483.01.T01:CDS 40.0%
AGCATGAGCCTACATCTATA+GGG - Chr3:55498884-55498903 None:intergenic 40.0%
AGGGAGGAACATTTAGTGTT+AGG + Chr3:55498817-55498836 MsG0380014483.01.T01:intron 40.0%
ATTAATTCGGGGTTGTACCA+TGG + Chr3:55498101-55498120 MsG0380014483.01.T01:intron 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + Chr3:55492471-55492490 MsG0380014483.01.T01:intron 40.0%
CAAAATTCTAGGTGGTACCA+TGG + Chr3:55498255-55498274 MsG0380014483.01.T01:intron 40.0%
CAACATGACTAACATCTCCA+AGG - Chr3:55499863-55499882 None:intergenic 40.0%
CAATGAGTGTTCACATGAGA+AGG + Chr3:55496730-55496749 MsG0380014483.01.T01:intron 40.0%
CATATTGAGAAGTCCACTCA+AGG + Chr3:55499936-55499955 MsG0380014483.01.T01:CDS 40.0%
CCGCATATTTGCAATTTCTC+AGG + Chr3:55498394-55498413 MsG0380014483.01.T01:CDS 40.0%
CTGCAAAATCTTCCATTCAG+TGG + Chr3:55495747-55495766 MsG0380014483.01.T01:CDS 40.0%
GAACTCTTTGCAACATTCAG+TGG + Chr3:55498123-55498142 MsG0380014483.01.T01:intron 40.0%
GAAGTTTACACACGTGCATT+AGG - Chr3:55498547-55498566 None:intergenic 40.0%
GAATGTTGCAAAGAGTTCCA+TGG - Chr3:55498121-55498140 None:intergenic 40.0%
GACAAGAGGAGATTGGAAAA+TGG + Chr3:55496954-55496973 MsG0380014483.01.T01:CDS 40.0%
GACCAAAGATTAGGAACAGA+GGG - Chr3:55496240-55496259 None:intergenic 40.0%
GATCCTAACCCTATAGATGT+AGG + Chr3:55498873-55498892 MsG0380014483.01.T01:intron 40.0%
GCATGAGTGATGAAGCAATA+TGG + Chr3:55494473-55494492 MsG0380014483.01.T01:intron 40.0%
GCATGCTGCTGAATAATTAG+TGG - Chr3:55497151-55497170 None:intergenic 40.0%
GCTTTCCTATGAAGGAAATC+AGG - Chr3:55496517-55496536 None:intergenic 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + Chr3:55494205-55494224 MsG0380014483.01.T01:intron 40.0%
TAGATGTAGGCTCATGCTAA+TGG + Chr3:55498886-55498905 MsG0380014483.01.T01:intron 40.0%
TAGCATGAGCCTACATCTAT+AGG - Chr3:55498885-55498904 None:intergenic 40.0%
TATTCTTCCCCATAACTCAC+CGG - Chr3:55491813-55491832 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - Chr3:55495252-55495271 None:intergenic 40.0%
TCCCGTTATGATGAAGAGAA+AGG + Chr3:55499783-55499802 MsG0380014483.01.T01:CDS 40.0%
TGATGAAGACAAGAGGAGAT+TGG + Chr3:55496947-55496966 MsG0380014483.01.T01:CDS 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + Chr3:55494312-55494331 MsG0380014483.01.T01:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG - Chr3:55496788-55496807 None:intergenic 40.0%
TTCCTTCGAAACAAAAGCAG+TGG - Chr3:55499685-55499704 None:intergenic 40.0%
TTTGCTTGCGGTCAACAAAA+GGG + Chr3:55497972-55497991 MsG0380014483.01.T01:intron 40.0%
! AACAAAAGCAGTGATGGTGA+TGG - Chr3:55499754-55499773 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + Chr3:55493101-55493120 MsG0380014483.01.T01:intron 40.0%
! AGCCACTTTGCAACAAATGA+AGG - Chr3:55497436-55497455 None:intergenic 40.0%
! ATGTGTAAGCTCTAATGCCA+AGG + Chr3:55494439-55494458 MsG0380014483.01.T01:intron 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG + Chr3:55491802-55491821 MsG0380014483.01.T01:intron 40.0%
! GTTTTTCACTGCAACCCTAA+TGG - Chr3:55499615-55499634 None:intergenic 40.0%
! TGATGTTGGCTACTTTGTGA+TGG + Chr3:55492431-55492450 MsG0380014483.01.T01:intron 40.0%
! TGTGTAAGCTCTAATGCCAA+GGG + Chr3:55494440-55494459 MsG0380014483.01.T01:intron 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - Chr3:55495187-55495206 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + Chr3:55492044-55492063 MsG0380014483.01.T01:CDS 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + Chr3:55494311-55494330 MsG0380014483.01.T01:intron 40.0%
!! ATCCACTGCTTTTGTTTCGA+AGG + Chr3:55499680-55499699 MsG0380014483.01.T01:intron 40.0%
!! ATGAGTTTGTTGACTAGGGT+TGG - Chr3:55498966-55498985 None:intergenic 40.0%
!! ATGTCGACTTGGATAAGGTA+AGG + Chr3:55496792-55496811 MsG0380014483.01.T01:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + Chr3:55494241-55494260 MsG0380014483.01.T01:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - Chr3:55494310-55494329 None:intergenic 40.0%
!! TGAGTTTGTTGACTAGGGTT+GGG - Chr3:55498965-55498984 None:intergenic 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + Chr3:55492717-55492736 MsG0380014483.01.T01:intron 40.0%
AAGCATACACTCCCAATGAC+TGG + Chr3:55492900-55492919 MsG0380014483.01.T01:intron 45.0%
AGTGTTCACATGAGAAGGCT+TGG + Chr3:55496735-55496754 MsG0380014483.01.T01:intron 45.0%
ATCATGTGTATGCAACCCCT+TGG + Chr3:55494850-55494869 MsG0380014483.01.T01:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - Chr3:55496405-55496424 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - Chr3:55496525-55496544 None:intergenic 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + Chr3:55492470-55492489 MsG0380014483.01.T01:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - Chr3:55495251-55495270 None:intergenic 45.0%
CCTCACACTTTCTTCAGATG+AGG - Chr3:55497234-55497253 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + Chr3:55496235-55496254 MsG0380014483.01.T01:intron 45.0%
CTGCATTCTTGCATATCAGG+AGG + Chr3:55495775-55495794 MsG0380014483.01.T01:CDS 45.0%
CTTATCCAAGTCGACATCGT+TGG - Chr3:55496789-55496808 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG - Chr3:55496227-55496246 None:intergenic 45.0%
GAGCCTACATCTATAGGGTT+AGG - Chr3:55498879-55498898 None:intergenic 45.0%
GAGTTTCTGCCAATACCAAG+TGG - Chr3:55496056-55496075 None:intergenic 45.0%
GCAAATATGCGGAGATCAAC+CGG - Chr3:55498386-55498405 None:intergenic 45.0%
GTTTGCTTGCGGTCAACAAA+AGG + Chr3:55497971-55497990 MsG0380014483.01.T01:intron 45.0%
TAACGGAAAGTGAGCAGAGA+TGG + Chr3:55497898-55497917 MsG0380014483.01.T01:intron 45.0%
TCATGCTTTCTTCATCCCCT+TGG - Chr3:55494459-55494478 None:intergenic 45.0%
TGTTACTGTCGTCAAGGTCT+TGG + Chr3:55494637-55494656 MsG0380014483.01.T01:intron 45.0%
TTGCTAGTAGTCCCTGAGTT+TGG - Chr3:55493115-55493134 None:intergenic 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + Chr3:55495592-55495611 MsG0380014483.01.T01:CDS 45.0%
! ATTGTTGTGATGGAGAAGGG+AGG + Chr3:55498801-55498820 MsG0380014483.01.T01:intron 45.0%
! CAAATTGCATGTGGGGGTAT+AGG + Chr3:55497080-55497099 MsG0380014483.01.T01:intron 45.0%
! CCTCATCTGAAGAAAGTGTG+AGG + Chr3:55497231-55497250 MsG0380014483.01.T01:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + Chr3:55494138-55494157 MsG0380014483.01.T01:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + Chr3:55493100-55493119 MsG0380014483.01.T01:intron 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG + Chr3:55491801-55491820 MsG0380014483.01.T01:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + Chr3:55496912-55496931 MsG0380014483.01.T01:CDS 45.0%
! GTGTAAGCTCTAATGCCAAG+GGG + Chr3:55494441-55494460 MsG0380014483.01.T01:intron 45.0%
! TCCACTCAAGGGATGGATTT+GGG + Chr3:55499948-55499967 MsG0380014483.01.T01:CDS 45.0%
! TTGGTGTGTTACTGTCGTCA+AGG + Chr3:55494631-55494650 MsG0380014483.01.T01:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG + Chr3:55491803-55491822 MsG0380014483.01.T01:intron 45.0%
!! CAACGATGTCGACTTGGATA+AGG + Chr3:55496787-55496806 MsG0380014483.01.T01:intron 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + Chr3:55492910-55492929 MsG0380014483.01.T01:intron 45.0%
!! ATATATATATATATATATCA+AGG + Chr3:55492675-55492694 MsG0380014483.01.T01:intron 5.0%
!! CTTAAAAAAATTATTAAATT+AGG - Chr3:55499344-55499363 None:intergenic 5.0%
!!! CTAATTTAATAATTTTTTTA+AGG + Chr3:55499342-55499361 MsG0380014483.01.T01:intron 5.0%
!!! TTTTTTACAAAATATTATAT+CGG - Chr3:55498716-55498735 None:intergenic 5.0%
AACGACCCGTGAGTGAGAAA+TGG - Chr3:55494398-55494417 None:intergenic 50.0%
AACTGGTCAAGTGTGCAGTG+AGG - Chr3:55499912-55499931 None:intergenic 50.0%
AATGCAGCCCAACCACTGAA+TGG - Chr3:55495762-55495781 None:intergenic 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - Chr3:55494397-55494416 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + Chr3:55494213-55494232 MsG0380014483.01.T01:intron 50.0%
AGGCACAGAGAAGGATAGAC+TGG + Chr3:55495005-55495024 MsG0380014483.01.T01:intron 50.0%
AGTGTTGTCAGGCACAGAGA+AGG + Chr3:55494996-55495015 MsG0380014483.01.T01:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + Chr3:55495248-55495267 MsG0380014483.01.T01:intron 50.0%
CGGGGAAGGATGTGTGATTA+AGG + Chr3:55495606-55495625 MsG0380014483.01.T01:CDS 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + Chr3:55494214-55494233 MsG0380014483.01.T01:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - Chr3:55495565-55495584 None:intergenic 50.0%
GCTAAAGGCAGTGTTCCACT+TGG + Chr3:55496038-55496057 MsG0380014483.01.T01:CDS 50.0%
GGAACAGAGGGAGTAGATGA+TGG - Chr3:55496228-55496247 None:intergenic 50.0%
GGCAGTGTTCCACTTGGTAT+TGG + Chr3:55496044-55496063 MsG0380014483.01.T01:CDS 50.0%
GGGCTGCATTCTTGCATATC+AGG + Chr3:55495772-55495791 MsG0380014483.01.T01:CDS 50.0%
TACACTACGATGCCGCAAGA+AGG - Chr3:55496315-55496334 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + Chr3:55494389-55494408 MsG0380014483.01.T01:intron 50.0%
TGAGAAGTCCACTCAAGGGA+TGG + Chr3:55499941-55499960 MsG0380014483.01.T01:CDS 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - Chr3:55494389-55494408 None:intergenic 50.0%
TTACAAACCCGTGCTTCGCA+CGG - Chr3:55498751-55498770 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + Chr3:55496781-55496800 MsG0380014483.01.T01:intron 50.0%
! CCTTGTCATTTCAATCCGGG+CGG - Chr3:55494156-55494175 None:intergenic 50.0%
! GTCCACTCAAGGGATGGATT+TGG + Chr3:55499947-55499966 MsG0380014483.01.T01:CDS 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + Chr3:55493569-55493588 MsG0380014483.01.T01:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG + Chr3:55492063-55492082 MsG0380014483.01.T01:intron 50.0%
ACCCGTGAGTGAGAAATGGG+AGG - Chr3:55494394-55494413 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - Chr3:55494393-55494412 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + Chr3:55494390-55494409 MsG0380014483.01.T01:intron 55.0%
CCGCCCGGATTGAAATGACA+AGG + Chr3:55494153-55494172 MsG0380014483.01.T01:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + Chr3:55494224-55494243 MsG0380014483.01.T01:intron 55.0%
GCCCAAATCCATCCCTTGAG+TGG - Chr3:55499952-55499971 None:intergenic 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - Chr3:55494390-55494409 None:intergenic 55.0%
TACAAACCCGTGCTTCGCAC+GGG - Chr3:55498750-55498769 None:intergenic 55.0%
TGAGAAATGGGAGGGAGGGA+GGG - Chr3:55494385-55494404 None:intergenic 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + Chr3:55492058-55492077 MsG0380014483.01.T01:CDS 55.0%
AAATGGGAGGGAGGGAGGGA+GGG - Chr3:55494381-55494400 None:intergenic 60.0%
ACAAACCCGTGCTTCGCACG+GGG - Chr3:55498749-55498768 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG - Chr3:55494386-55494405 None:intergenic 60.0%
AATGGGAGGGAGGGAGGGAG+GGG - Chr3:55494380-55494399 None:intergenic 65.0%
CAAACCCGTGCTTCGCACGG+GGG - Chr3:55498748-55498767 None:intergenic 65.0%
CTAACCCCCGTGCGAAGCAC+GGG + Chr3:55498741-55498760 MsG0380014483.01.T01:intron 65.0%
GAAATGGGAGGGAGGGAGGG+AGG - Chr3:55494382-55494401 None:intergenic 65.0%
GCTAACCCCCGTGCGAAGCA+CGG + Chr3:55498740-55498759 MsG0380014483.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55491726 55500019 55491726 ID=MsG0380014483.01;Name=MsG0380014483.01
Chr3 mRNA 55491726 55500019 55491726 ID=MsG0380014483.01.T01;Parent=MsG0380014483.01;Name=MsG0380014483.01.T01;_AED=0.48;_eAED=0.82;_QI=0|0|0|1|0.57|0.5|8|0|335
Chr3 exon 55491726 55491812 55491726 ID=MsG0380014483.01.T01:exon:18350;Parent=MsG0380014483.01.T01
Chr3 exon 55491972 55492079 55491972 ID=MsG0380014483.01.T01:exon:18351;Parent=MsG0380014483.01.T01
Chr3 exon 55495544 55495627 55495544 ID=MsG0380014483.01.T01:exon:18352;Parent=MsG0380014483.01.T01
Chr3 exon 55495745 55495841 55495745 ID=MsG0380014483.01.T01:exon:18353;Parent=MsG0380014483.01.T01
Chr3 exon 55496015 55496130 55496015 ID=MsG0380014483.01.T01:exon:18354;Parent=MsG0380014483.01.T01
Chr3 exon 55496856 55497046 55496856 ID=MsG0380014483.01.T01:exon:18355;Parent=MsG0380014483.01.T01
Chr3 exon 55498367 55498415 55498367 ID=MsG0380014483.01.T01:exon:18356;Parent=MsG0380014483.01.T01
Chr3 exon 55499744 55500019 55499744 ID=MsG0380014483.01.T01:exon:18357;Parent=MsG0380014483.01.T01
Chr3 CDS 55491726 55491812 55491726 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55491972 55492079 55491972 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55495544 55495627 55495544 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55495745 55495841 55495745 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55496015 55496130 55496015 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55496856 55497046 55496856 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55498367 55498415 55498367 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Chr3 CDS 55499744 55500019 55499744 ID=MsG0380014483.01.T01:cds;Parent=MsG0380014483.01.T01
Gene Sequence

>MsG0380014483.01.T01

GCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATATATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTATCAACTCTTTCAGTTTTTCATGGCATACAAAGGATTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGAACTGCAAAATCTTCCATTCAGTGGTTGGGCTGCATTCTTGCATATCAGGAGGTGCGATTATTGAAGACACTTTGTTGATGGCGCATATTATTACGAAAGCTGATAAAAGTTTTTTGGCTGCTAAAGGCAGTGTTCCACTTGGTATTGGCAGAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGTTAGAAGTTAGTTATATTAGTTACTCTTTTATAACATCTAATATTGTTTTGTTAAAGGATGGTCGAGTAAGTTTTGAGGAATTTAAGGCAATGATGAAGACAAGAGGAGATTGGAAAATGGCATCTAGACAATATTTAAAAGCATTTCTAAATGCGTTAAGCTTCAGAATGTTTAAAGACAAATCTACGGGTGGGAAAATGTATAAGCCGGTTGATCTCCGCATATTTGCAATTTCTCAGAAAGAAGCCATCACCATCACTGCTTTTGTTTCAAAGGAATCCCGTTATGATGAAGAGAAAGGATCAAACACTTTGGTTGATCTTTGTGTTGAGAAAGCTATTGATAATGTAAAATACCTTGGAGATGTTAGTCATGTTGATCATCATATGCTTGAAAGAATCTTGCCTCACTGCACACTTGACCAGTTGATGCATATTGAGAAGTCCACTCAAGGGATGGATTTGGGCCCTATAACAGATAAATTATCTCCCACTATTTTTTTTACTAAGAAGTAA
Protein sequence

>MsG0380014483.01.T01

AYDRAAIKFRGVEADIYFNIEDYEEDLKPVSTLSVFHGIQRIFMVNDELLLQVFKKRKSLGALAMTQLRYLPLSKMLDADITDSVIGEGCVIKNCKIFHSVVGLHSCISGGAIIEDTLLMAHIITKADKSFLAAKGSVPLGIGRNSRIKRAIVDKNARIGENVKLEVSYISYSFITSNIVLLKDGRVSFEEFKAMMKTRGDWKMASRQYLKAFLNALSFRMFKDKSTGGKMYKPVDLRIFAISQKEAITITAFVSKESRYDEEKGSNTLVDLCVEKAIDNVKYLGDVSHVDHHMLERILPHCTLDQLMHIEKSTQGMDLGPITDKLSPTIFFTKK*