AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014485.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014485.01.T01 MTR_4g066660 65.600 125 21 2 229 331 421 545 6.80e-43 155
MsG0380014485.01.T01 MTR_4g009290 55.556 99 22 2 255 331 145 243 2.71e-23 97.1
MsG0380014485.01.T01 MTR_4g107490 38.333 120 51 2 229 325 422 541 5.55e-17 82.0
MsG0380014485.01.T01 MTR_5g089200 89.189 37 4 0 69 105 192 228 8.19e-12 66.2
MsG0380014485.01.T01 MTR_5g089280 49.333 75 37 1 31 105 163 236 9.99e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014485.01.T01 AT2G31500 44.715 123 38 2 229 323 415 535 2.55e-24 103
MsG0380014485.01.T01 AT5G12480 37.500 120 51 2 230 325 315 434 6.57e-18 84.7
MsG0380014485.01.T01 AT5G12480 37.500 120 51 2 230 325 409 528 7.87e-18 84.7
MsG0380014485.01.T01 AT1G18890 33.333 120 57 2 229 325 412 531 3.90e-11 64.3

Find 42 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGGGAAGGATGTGTGATTA+AGG 0.317043 3:+55526398 MsG0380014485.01.T01:CDS
CTCATGCTTTCTTCATCCCT+TGG 0.325599 3:-55525245 None:intergenic
TCGGGGTTATCAGTACTCTT+TGG 0.341182 3:+55522345 MsG0380014485.01.T01:CDS
ATGCAGCTCAATTCATTCAT+TGG 0.365617 3:+55526729 MsG0380014485.01.T01:CDS
ACAAATCCTTCTCTATCAAT+TGG 0.369198 3:-55524472 None:intergenic
GCATGAGTGATGAAGCAATA+TGG 0.371280 3:+55525261 MsG0380014485.01.T01:CDS
GATGAACTCTTCACATTTGA+AGG 0.374057 3:-55527499 None:intergenic
GACAAGAGGAGATTGGAAAA+TGG 0.375067 3:+55527747 MsG0380014485.01.T01:CDS
GATATCACTGATAGTGTTAT+CGG 0.379793 3:+55526378 MsG0380014485.01.T01:CDS
CGTCTATGTTTCTTAATCTC+AGG 0.392267 3:+55522722 MsG0380014485.01.T01:CDS
TTACATAGAACATACCTTAT+GGG 0.397491 3:-55522200 None:intergenic
GTTGACAAGAATGCTAGAAT+TGG 0.404186 3:+55526892 MsG0380014485.01.T01:CDS
TTGATAGAGAAGGATTTGTT+TGG 0.409698 3:+55524476 MsG0380014485.01.T01:CDS
CTTTGGTTCATGCAGCTGCT+TGG 0.448886 3:+55522362 MsG0380014485.01.T01:CDS
TTATCCAAGTCGACATCGTT+GGG 0.457199 3:-55527578 None:intergenic
TGATGAAGACAAGAGGAGAT+TGG 0.460581 3:+55527740 MsG0380014485.01.T01:CDS
CAACGATGTCGACTTGGATA+AGG 0.467770 3:+55527580 MsG0380014485.01.T01:CDS
ATATCACTGATAGTGTTATC+GGG 0.469841 3:+55526379 MsG0380014485.01.T01:CDS
AGAAGGATTTGTTTGGTTGG+TGG 0.476971 3:+55524483 MsG0380014485.01.T01:CDS
GGTGGAATTTGAAGAAATGT+TGG 0.477230 3:+55524501 MsG0380014485.01.T01:CDS
TATGATAATTTCATCCCATA+AGG 0.480276 3:+55522186 None:intergenic
TTTAAGAAGCGCAAGTCTCT+TGG 0.484148 3:+55522818 MsG0380014485.01.T01:CDS
AGTGTTCACATGAGAAGGCT+TGG 0.497606 3:+55527528 MsG0380014485.01.T01:CDS
CATTCCCAACGATGTCGACT+TGG 0.506190 3:+55527574 MsG0380014485.01.T01:CDS
CTTATCCAAGTCGACATCGT+TGG 0.524700 3:-55527579 None:intergenic
AATGTTTAAAGACAAATCTA+CGG 0.528586 3:+55527816 MsG0380014485.01.T01:CDS
TAGAGAAGGATTTGTTTGGT+TGG 0.529844 3:+55524480 MsG0380014485.01.T01:CDS
CAATGAGTGTTCACATGAGA+AGG 0.534579 3:+55527523 MsG0380014485.01.T01:CDS
TACAAACCAATTGATAGAGA+AGG 0.541883 3:+55524466 MsG0380014485.01.T01:CDS
CAACATTGAAGATTATGAAG+AGG 0.549840 3:+55522547 MsG0380014485.01.T01:CDS
GTCTCTTGGTGCCTTAGCGA+TGG 0.562521 3:+55522832 MsG0380014485.01.T01:CDS
TGTGTAAAGCTCTAATGCCA+AGG 0.563050 3:+55525228 MsG0380014485.01.T01:CDS
TTATGAAGAGGATTTGAAGC+CGG 0.569826 3:+55522559 MsG0380014485.01.T01:CDS
ACTGATAGTGTTATCGGGGA+AGG 0.575346 3:+55526384 MsG0380014485.01.T01:CDS
ATGTTTAAAGACAAATCTAC+GGG 0.579761 3:+55527817 MsG0380014485.01.T01:CDS
AATTAAGTTCAGAGGAGTAG+AGG 0.591705 3:+55522511 MsG0380014485.01.T01:CDS
AGAGCTGCAATTAAGTTCAG+AGG 0.598621 3:+55522503 MsG0380014485.01.T01:CDS
GCATCAAGCATCTTCGACAG+AGG 0.603100 3:-55526354 None:intergenic
GTGTAAAGCTCTAATGCCAA+GGG 0.623691 3:+55525229 MsG0380014485.01.T01:CDS
AAGGCAATGATGAAGACAAG+AGG 0.640920 3:+55527733 MsG0380014485.01.T01:CDS
TAGAATTGGAGAAAATGTGA+AGG 0.647495 3:+55526906 MsG0380014485.01.T01:CDS
TATCACTGATAGTGTTATCG+GGG 0.674328 3:+55526380 MsG0380014485.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTTATGATGT+TGG + Chr3:55523190-55523209 MsG0380014485.01.T01:intron 10.0%
!! TTGGAATTTAAAAAAATATT+TGG + Chr3:55524406-55524425 MsG0380014485.01.T01:intron 10.0%
!!! AATAAGTTTTATATTTGTTT+TGG - Chr3:55527355-55527374 None:intergenic 10.0%
!!! TTTCTTCTATATTATTTTAA+TGG + Chr3:55525340-55525359 MsG0380014485.01.T01:intron 10.0%
!! AAAAAAATATTTGGTTGATT+TGG + Chr3:55524415-55524434 MsG0380014485.01.T01:intron 15.0%
!! AAAAATATTCTCAACATTAA+AGG - Chr3:55522325-55522344 None:intergenic 15.0%
!! AAATTGAATGTATAAATTGT+AGG + Chr3:55522233-55522252 MsG0380014485.01.T01:intron 15.0%
!! AATAATTGATTGAAAACTAT+AGG - Chr3:55522636-55522655 None:intergenic 15.0%
!! AATTGAATGTATAAATTGTA+GGG + Chr3:55522234-55522253 MsG0380014485.01.T01:intron 15.0%
!! TAAAAAATTTACACTTTAGT+AGG - Chr3:55523331-55523350 None:intergenic 15.0%
!! TATAATGAAAAAAATGAACT+TGG + Chr3:55527434-55527453 MsG0380014485.01.T01:intron 15.0%
!! TTAATTCAATTATGTTATGA+TGG + Chr3:55524828-55524847 MsG0380014485.01.T01:intron 15.0%
!!! AAATTTCATTCATTCTTTTA+TGG + Chr3:55522412-55522431 MsG0380014485.01.T01:intron 15.0%
!!! ATCTAATATTGTTTTGTTAA+AGG + Chr3:55527684-55527703 MsG0380014485.01.T01:CDS 15.0%
!!! GTATTGATTTATTTATTTCT+GGG + Chr3:55523744-55523763 MsG0380014485.01.T01:intron 15.0%
!!! TAATGTTGAGAATATTTTTT+CGG + Chr3:55522326-55522345 MsG0380014485.01.T01:CDS 15.0%
!! AATATATCCATGTAAAAAAC+TGG - Chr3:55523277-55523296 None:intergenic 20.0%
!! AATGTTCATGTTGAAATATT+TGG + Chr3:55524909-55524928 MsG0380014485.01.T01:intron 20.0%
!! AATGTTTAAAGACAAATCTA+CGG + Chr3:55527816-55527835 MsG0380014485.01.T01:CDS 20.0%
!! ATCAATTGAAGTCAATAATT+TGG - Chr3:55523369-55523388 None:intergenic 20.0%
!! CAATTCAAGATACAAAAAAA+AGG - Chr3:55522660-55522679 None:intergenic 20.0%
!! CGAATTTGGAAAAAAAAATT+TGG + Chr3:55524108-55524127 MsG0380014485.01.T01:intron 20.0%
!! TAAAATCTAATTGATACTGA+TGG + Chr3:55523928-55523947 MsG0380014485.01.T01:intron 20.0%
!! TAAGAATTGATCAAAATAGA+AGG + Chr3:55526115-55526134 MsG0380014485.01.T01:intron 20.0%
!! TTCTATTCACATGTAAATAA+AGG - Chr3:55525736-55525755 None:intergenic 20.0%
!! TTGTTCTTTATGTTATGTAA+TGG - Chr3:55525763-55525782 None:intergenic 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG - Chr3:55524605-55524624 None:intergenic 20.0%
!!! AATATTGTTTTGTTAAAGGA+TGG + Chr3:55527688-55527707 MsG0380014485.01.T01:CDS 20.0%
!!! AATGTTGAGAATATTTTTTC+GGG + Chr3:55522327-55522346 MsG0380014485.01.T01:CDS 20.0%
!!! AATTGATTCAAGTTTATTAG+TGG + Chr3:55523382-55523401 MsG0380014485.01.T01:intron 20.0%
!!! AATTTTAACTTCAATGTGAA+TGG + Chr3:55523040-55523059 MsG0380014485.01.T01:intron 20.0%
!!! AGCTTTCTATTGATAATTTT+TGG + Chr3:55524327-55524346 MsG0380014485.01.T01:intron 20.0%
!!! ATATTTGTTTTGGATAATGA+TGG - Chr3:55527345-55527364 None:intergenic 20.0%
!!! ATCTAAATTCTAAAGCATTA+TGG - Chr3:55523540-55523559 None:intergenic 20.0%
!!! ATGGATTAGAAAGTAAAATA+GGG - Chr3:55526964-55526983 None:intergenic 20.0%
!!! GGTATTGATTTATTTATTTC+TGG + Chr3:55523743-55523762 MsG0380014485.01.T01:intron 20.0%
!!! GTTATTGAAATTTTTGCAAA+TGG + Chr3:55523722-55523741 MsG0380014485.01.T01:intron 20.0%
!!! TATTGATAATTTTTGGTTTG+TGG + Chr3:55524334-55524353 MsG0380014485.01.T01:intron 20.0%
!!! TGTAATTGTTTTATGATGAA+TGG + Chr3:55522271-55522290 MsG0380014485.01.T01:intron 20.0%
!!! TTAACAGACTTTAATTTTTG+TGG + Chr3:55524018-55524037 MsG0380014485.01.T01:intron 20.0%
!!! TTAGTTATTCTTTTGAGTTT+TGG + Chr3:55524387-55524406 MsG0380014485.01.T01:intron 20.0%
! AACTAGATAAATCTTTGATG+TGG + Chr3:55523606-55523625 MsG0380014485.01.T01:intron 25.0%
! AATTTCTGTCTTCTTTCTAA+TGG - Chr3:55524783-55524802 None:intergenic 25.0%
! ACACCTTCAATAAAAAATGT+CGG - Chr3:55527169-55527188 None:intergenic 25.0%
! ACTTAAAAAGACCAAAGATT+AGG - Chr3:55527045-55527064 None:intergenic 25.0%
! AGTTGGTTAAATATACCAAA+AGG - Chr3:55525964-55525983 None:intergenic 25.0%
! ATGTTTAAAGACAAATCTAC+GGG + Chr3:55527817-55527836 MsG0380014485.01.T01:CDS 25.0%
! CTAAAAACATACACAATCTA+AGG - Chr3:55524278-55524297 None:intergenic 25.0%
! GACAAAATTTAACACGAAAT+AGG + Chr3:55524615-55524634 MsG0380014485.01.T01:intron 25.0%
! TAAATCTTTGATGTGGTATT+TGG + Chr3:55523613-55523632 MsG0380014485.01.T01:intron 25.0%
! TATTAAGCTTGACAAATTGT+TGG + Chr3:55526991-55527010 MsG0380014485.01.T01:intron 25.0%
! TGTTGTGATTTAAATGAGTT+TGG + Chr3:55522678-55522697 MsG0380014485.01.T01:intron 25.0%
! TTACATAGAACATACCTTAT+GGG - Chr3:55522203-55522222 None:intergenic 25.0%
! TTGTTAAAGCTATCTAAATC+TGG - Chr3:55527379-55527398 None:intergenic 25.0%
! TTTACATAGAACATACCTTA+TGG - Chr3:55522204-55522223 None:intergenic 25.0%
!! AATTAACTTGAAATAGGCTT+TGG + Chr3:55524799-55524818 MsG0380014485.01.T01:intron 25.0%
!! ACATAAAGAACAAAAAGTGT+TGG + Chr3:55525770-55525789 MsG0380014485.01.T01:intron 25.0%
!! ATTCAAAATTTTGTGATGCT+TGG + Chr3:55525400-55525419 MsG0380014485.01.T01:intron 25.0%
!! GACAGAAATTAACTTGAAAT+AGG + Chr3:55524793-55524812 MsG0380014485.01.T01:intron 25.0%
!! TCATTAGTGTGTATCATTTT+TGG + Chr3:55526272-55526291 MsG0380014485.01.T01:intron 25.0%
!! TCTGAAAATCAATTTGTTTC+AGG + Chr3:55522294-55522313 MsG0380014485.01.T01:intron 25.0%
!! TGTCAATTTTTGAATCCTTT+TGG + Chr3:55525946-55525965 MsG0380014485.01.T01:intron 25.0%
!! TTTTTCCAAATTCGAAAACT+CGG - Chr3:55524102-55524121 None:intergenic 25.0%
!!! AGTAAGTTTTGAGGAATTTA+AGG + Chr3:55527714-55527733 MsG0380014485.01.T01:CDS 25.0%
!!! AGTCATGATTGTGTTATTTT+TGG + Chr3:55526249-55526268 MsG0380014485.01.T01:intron 25.0%
!!! AGTTATTCCAGTTTTTTACA+TGG + Chr3:55523267-55523286 MsG0380014485.01.T01:intron 25.0%
!!! ATGTTGAGAATATTTTTTCG+GGG + Chr3:55522328-55522347 MsG0380014485.01.T01:CDS 25.0%
!!! CATTAGTGTGTATCATTTTT+GGG + Chr3:55526273-55526292 MsG0380014485.01.T01:intron 25.0%
!!! CTTTAATTTTTGTGGTTTTG+TGG + Chr3:55524026-55524045 MsG0380014485.01.T01:intron 25.0%
!!! GATGGATTAGAAAGTAAAAT+AGG - Chr3:55526965-55526984 None:intergenic 25.0%
!!! GATTTATTTATTTCTGGGAA+TGG + Chr3:55523749-55523768 MsG0380014485.01.T01:intron 25.0%
!!! TTATCTAGTTGATTTTTCTG+TGG - Chr3:55523596-55523615 None:intergenic 25.0%
AAAATCTGCTCTAATGTAGT+TGG + Chr3:55524886-55524905 MsG0380014485.01.T01:intron 30.0%
ACAAATCCTTCTCTATCAAT+TGG - Chr3:55524475-55524494 None:intergenic 30.0%
AGAAAATCAATGTTGCAGTT+AGG - Chr3:55526780-55526799 None:intergenic 30.0%
AGTTTGGAGGAATTTATTTC+AGG + Chr3:55522694-55522713 MsG0380014485.01.T01:intron 30.0%
ATAAGTCTACTTCAATTGAG+AGG - Chr3:55525918-55525937 None:intergenic 30.0%
ATATACCTGATTTCCTTCAT+AGG + Chr3:55527302-55527321 MsG0380014485.01.T01:intron 30.0%
CAACATTGAAGATTATGAAG+AGG + Chr3:55522547-55522566 MsG0380014485.01.T01:CDS 30.0%
GGTCTATGATGGTTAAAATT+TGG + Chr3:55523695-55523714 MsG0380014485.01.T01:intron 30.0%
GTAAAAATCTGAACTGTTGT+TGG + Chr3:55524705-55524724 MsG0380014485.01.T01:intron 30.0%
TAAGTCTACTTCAATTGAGA+GGG - Chr3:55525917-55525936 None:intergenic 30.0%
TACAAACCAATTGATAGAGA+AGG + Chr3:55524466-55524485 MsG0380014485.01.T01:CDS 30.0%
TAGAATTGGAGAAAATGTGA+AGG + Chr3:55526906-55526925 MsG0380014485.01.T01:CDS 30.0%
TAGACCTACTGTTAGAAAAA+TGG + Chr3:55524536-55524555 MsG0380014485.01.T01:intron 30.0%
TATTGAAGACACTTTGTTGA+TGG + Chr3:55526597-55526616 MsG0380014485.01.T01:intron 30.0%
TCAAGCTTAATATGAGAAGA+TGG - Chr3:55526983-55527002 None:intergenic 30.0%
TCAATAGAAAGCTTGAACAA+AGG - Chr3:55524320-55524339 None:intergenic 30.0%
TGAAGGAAATCAGGTATATT+CGG - Chr3:55527301-55527320 None:intergenic 30.0%
TGGTACTAATGTGCATTTAA+AGG - Chr3:55525889-55525908 None:intergenic 30.0%
TGTGATTTAAATGAGTTTGG+AGG + Chr3:55522681-55522700 MsG0380014485.01.T01:intron 30.0%
TGTGTATGATGGTTCAAATT+TGG + Chr3:55523796-55523815 MsG0380014485.01.T01:intron 30.0%
TTCATACATCAGTTTGCAAT+AGG + Chr3:55524750-55524769 MsG0380014485.01.T01:intron 30.0%
TTCGCAGTTATTATTAGTGT+TGG + Chr3:55527237-55527256 MsG0380014485.01.T01:intron 30.0%
TTGAGTGAAAATTGAACCAT+TGG + Chr3:55524586-55524605 MsG0380014485.01.T01:intron 30.0%
TTGCTTTCTTATGTGTATGA+TGG + Chr3:55523785-55523804 MsG0380014485.01.T01:intron 30.0%
! AACAATTGCTCTTTTGATAC+GGG - Chr3:55526875-55526894 None:intergenic 30.0%
! AAGTTTTTCATGGCATACAA+AGG + Chr3:55522758-55522777 MsG0380014485.01.T01:CDS 30.0%
! ATATCACTGATAGTGTTATC+GGG + Chr3:55526379-55526398 MsG0380014485.01.T01:CDS 30.0%
! CAACAATTGCTCTTTTGATA+CGG - Chr3:55526876-55526895 None:intergenic 30.0%
! CAGAAGCTGATAAAAGTTTT+TGG + Chr3:55526810-55526829 MsG0380014485.01.T01:intron 30.0%
! GATATCACTGATAGTGTTAT+CGG + Chr3:55526378-55526397 MsG0380014485.01.T01:CDS 30.0%
! GGAATGAAAGTGTATATAGT+TGG - Chr3:55526943-55526962 None:intergenic 30.0%
! GGTTATTAATTGATGACAAC+AGG + Chr3:55527455-55527474 MsG0380014485.01.T01:intron 30.0%
! GTGACATTGTAACTTTTGTA+AGG - Chr3:55523965-55523984 None:intergenic 30.0%
! TCATAAACACATTTTACCCA+AGG - Chr3:55525114-55525133 None:intergenic 30.0%
! TGGTTGTGTGATTTTGTTAA+AGG + Chr3:55524435-55524454 MsG0380014485.01.T01:intron 30.0%
! TTGATAGAGAAGGATTTGTT+TGG + Chr3:55524476-55524495 MsG0380014485.01.T01:CDS 30.0%
!! ATGACCATTTTTCTAACAGT+AGG - Chr3:55524543-55524562 None:intergenic 30.0%
!! CACATGTAAATAAAGGTGTT+TGG - Chr3:55525729-55525748 None:intergenic 30.0%
!! GAAAGTGTTTCTTCAATTCA+TGG + Chr3:55525834-55525853 MsG0380014485.01.T01:intron 30.0%
!! TAGTTCTGATTATTGTGATC+TGG + Chr3:55522921-55522940 MsG0380014485.01.T01:intron 30.0%
!!! ATGTTTGTTGTAGCACTTTT+GGG + Chr3:55525523-55525542 MsG0380014485.01.T01:intron 30.0%
!!! CAACTCTTTCAAGTTTTTCA+TGG + Chr3:55522748-55522767 MsG0380014485.01.T01:CDS 30.0%
!!! CATCTTTTTTCTCTTCTGTT+TGG + Chr3:55523471-55523490 MsG0380014485.01.T01:intron 30.0%
!!! GGCATACAAAGGATTTTTTA+TGG + Chr3:55522769-55522788 MsG0380014485.01.T01:CDS 30.0%
!!! GGCTTGCAATTTTTTCTTAT+TGG + Chr3:55525446-55525465 MsG0380014485.01.T01:intron 30.0%
!!! TAAAAGTTTTTGGCTGCTAA+AGG + Chr3:55526820-55526839 MsG0380014485.01.T01:intron 30.0%
!!! TATGTTTGTTGTAGCACTTT+TGG + Chr3:55525522-55525541 MsG0380014485.01.T01:intron 30.0%
!!! TGATAATTTTTGGTTTGTGG+TGG + Chr3:55524337-55524356 MsG0380014485.01.T01:intron 30.0%
!!! TGGTTTTGTGGTTAATGTTA+AGG + Chr3:55524038-55524057 MsG0380014485.01.T01:intron 30.0%
!!! TGTTTTTAGTGAGTTGTGTA+TGG + Chr3:55524289-55524308 MsG0380014485.01.T01:intron 30.0%
!!! TTTTTTATTGAAGGTGTGTC+TGG + Chr3:55527172-55527191 MsG0380014485.01.T01:intron 30.0%
AAAAAACCTTACCATCGCTA+AGG - Chr3:55522846-55522865 None:intergenic 35.0%
AAAATCTTCCATTCAGTGGT+TGG + Chr3:55526544-55526563 MsG0380014485.01.T01:intron 35.0%
AAACATAGATTGCCTTCTTG+CGG + Chr3:55527095-55527114 MsG0380014485.01.T01:intron 35.0%
AAATCTTCCATTCAGTGGTT+GGG + Chr3:55526545-55526564 MsG0380014485.01.T01:intron 35.0%
AACATAGTTGCAAAACTCCA+AGG - Chr3:55525657-55525676 None:intergenic 35.0%
AACGAAGAACAACATAGAGA+TGG - Chr3:55525552-55525571 None:intergenic 35.0%
AATTAAGTTCAGAGGAGTAG+AGG + Chr3:55522511-55522530 MsG0380014485.01.T01:CDS 35.0%
ACATAGTTGCAAAACTCCAA+GGG - Chr3:55525656-55525675 None:intergenic 35.0%
ATGCAGCTCAATTCATTCAT+TGG + Chr3:55526729-55526748 MsG0380014485.01.T01:CDS 35.0%
ATGCTAGAACTGATGATTCA+TGG - Chr3:55525582-55525601 None:intergenic 35.0%
ATTTAACACGAAATAGGCTC+TGG + Chr3:55524621-55524640 MsG0380014485.01.T01:intron 35.0%
CGCATGGAGTATAAGAAAAT+TGG + Chr3:55523138-55523157 MsG0380014485.01.T01:intron 35.0%
CGTCTATGTTTCTTAATCTC+AGG + Chr3:55522722-55522741 MsG0380014485.01.T01:CDS 35.0%
CTCACATGAAAGCTAACAAT+TGG + Chr3:55525985-55526004 MsG0380014485.01.T01:intron 35.0%
GAGCATATTGTTGATCTGAA+AGG + Chr3:55524250-55524269 MsG0380014485.01.T01:intron 35.0%
GATGAACTCTTCACATTTGA+AGG - Chr3:55527502-55527521 None:intergenic 35.0%
GCTTTGCTTATTATGCATTC+AGG + Chr3:55523228-55523247 MsG0380014485.01.T01:intron 35.0%
GGTGGAATTTGAAGAAATGT+TGG + Chr3:55524501-55524520 MsG0380014485.01.T01:CDS 35.0%
GTTGACAAGAATGCTAGAAT+TGG + Chr3:55526892-55526911 MsG0380014485.01.T01:CDS 35.0%
TATCGCAGTTGAGTCTAAAT+TGG - Chr3:55526330-55526349 None:intergenic 35.0%
TATGGAAAACTCTTCGTGTA+AGG + Chr3:55525279-55525298 MsG0380014485.01.T01:intron 35.0%
TGTTGTTGAAAGCTTTGCTT+TGG + Chr3:55523822-55523841 MsG0380014485.01.T01:intron 35.0%
TTACACTTTAGTAGGAGATG+AGG - Chr3:55523323-55523342 None:intergenic 35.0%
TTTCCTTCATAGGAAAGCTT+TGG + Chr3:55527312-55527331 MsG0380014485.01.T01:intron 35.0%
! AACACATTTTACCCAAGGTA+AGG - Chr3:55525109-55525128 None:intergenic 35.0%
! AATCCTTGTCATTTCAATCC+GGG - Chr3:55524942-55524961 None:intergenic 35.0%
! AGAGTGTTCAGAATAAGTCA+TGG + Chr3:55525061-55525080 MsG0380014485.01.T01:intron 35.0%
! ATGAATCATCAGTTCTAGCA+TGG + Chr3:55525581-55525600 MsG0380014485.01.T01:intron 35.0%
! ATGGAAGATTTTGCAGTTCT+AGG - Chr3:55526536-55526555 None:intergenic 35.0%
! CAAGTTTCAGTATTTTCGCA+TGG + Chr3:55523122-55523141 MsG0380014485.01.T01:intron 35.0%
! CAATCCTTGTCATTTCAATC+CGG - Chr3:55524943-55524962 None:intergenic 35.0%
! TAGAGAAGGATTTGTTTGGT+TGG + Chr3:55524480-55524499 MsG0380014485.01.T01:CDS 35.0%
! TATCACTGATAGTGTTATCG+GGG + Chr3:55526380-55526399 MsG0380014485.01.T01:CDS 35.0%
! TTATGAAGAGGATTTGAAGC+CGG + Chr3:55522559-55522578 MsG0380014485.01.T01:CDS 35.0%
! TTCAACCGAGTTTTCGAATT+TGG + Chr3:55524094-55524113 MsG0380014485.01.T01:intron 35.0%
!! AAGAACAAAAAGTGTTGGTC+AGG + Chr3:55525775-55525794 MsG0380014485.01.T01:intron 35.0%
!! ATTGGCTTGTGTAAGTTACA+AGG + Chr3:55526747-55526766 MsG0380014485.01.T01:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + Chr3:55527163-55527182 MsG0380014485.01.T01:intron 35.0%
!!! TAATTTTTGGTTTGTGGTGG+AGG + Chr3:55524340-55524359 MsG0380014485.01.T01:intron 35.0%
!!! TGTGTGTAGAAGTACTTTTC+TGG + Chr3:55524168-55524187 MsG0380014485.01.T01:intron 35.0%
AACCATCATAGACCAGTCAT+TGG - Chr3:55523689-55523708 None:intergenic 40.0%
AAGAGCAAGAGAAGAGAAGA+GGG + Chr3:55524989-55525008 MsG0380014485.01.T01:intron 40.0%
AAGGCAATGATGAAGACAAG+AGG + Chr3:55527733-55527752 MsG0380014485.01.T01:CDS 40.0%
ACCATCATAGACCAGTCATT+GGG - Chr3:55523688-55523707 None:intergenic 40.0%
AGACCAAAGATTAGGAACAG+AGG - Chr3:55527037-55527056 None:intergenic 40.0%
AGAGCTGCAATTAAGTTCAG+AGG + Chr3:55522503-55522522 MsG0380014485.01.T01:CDS 40.0%
ATTCAGGTGTCTTTCTTGCT+GGG + Chr3:55523244-55523263 MsG0380014485.01.T01:intron 40.0%
CAATGAGTGTTCACATGAGA+AGG + Chr3:55527523-55527542 MsG0380014485.01.T01:CDS 40.0%
CATAGTTGCAAAACTCCAAG+GGG - Chr3:55525655-55525674 None:intergenic 40.0%
CTGCAAAATCTTCCATTCAG+TGG + Chr3:55526540-55526559 MsG0380014485.01.T01:intron 40.0%
CTTCAATTGAGAGGGAGTTA+TGG - Chr3:55525909-55525928 None:intergenic 40.0%
GACAAGAGGAGATTGGAAAA+TGG + Chr3:55527747-55527766 MsG0380014485.01.T01:CDS 40.0%
GACCAAAGATTAGGAACAGA+GGG - Chr3:55527036-55527055 None:intergenic 40.0%
GCATGAGTGATGAAGCAATA+TGG + Chr3:55525261-55525280 MsG0380014485.01.T01:CDS 40.0%
GCTTTCCTATGAAGGAAATC+AGG - Chr3:55527310-55527329 None:intergenic 40.0%
TAAGAGCAAGAGAAGAGAAG+AGG + Chr3:55524988-55525007 MsG0380014485.01.T01:intron 40.0%
TATTCTTCCCCATAACTCAC+CGG - Chr3:55522581-55522600 None:intergenic 40.0%
TCCACTTCACAACTTATCTG+CGG - Chr3:55526046-55526065 None:intergenic 40.0%
TGATGAAGACAAGAGGAGAT+TGG + Chr3:55527740-55527759 MsG0380014485.01.T01:CDS 40.0%
TTAGCTTAGAGCCTTACCTT+GGG + Chr3:55525095-55525114 MsG0380014485.01.T01:intron 40.0%
TTATCCAAGTCGACATCGTT+GGG - Chr3:55527581-55527600 None:intergenic 40.0%
! AATGTGACTTGCCAAACTCA+GGG + Chr3:55523876-55523895 MsG0380014485.01.T01:intron 40.0%
! AGAAGGATTTGTTTGGTTGG+TGG + Chr3:55524483-55524502 MsG0380014485.01.T01:CDS 40.0%
! ATTTGAAGCCGGTGAGTTAT+GGG + Chr3:55522570-55522589 MsG0380014485.01.T01:intron 40.0%
! GTGTAAAGCTCTAATGCCAA+GGG + Chr3:55525229-55525248 MsG0380014485.01.T01:CDS 40.0%
! TGACAACAGGCAGATTTTGA+TGG + Chr3:55527468-55527487 MsG0380014485.01.T01:intron 40.0%
! TGATGGCGCATATTATTACG+AGG + Chr3:55526614-55526633 MsG0380014485.01.T01:intron 40.0%
! TGATGTTGGCTACTTTGTGA+TGG + Chr3:55523204-55523223 MsG0380014485.01.T01:intron 40.0%
! TGTGTAAAGCTCTAATGCCA+AGG + Chr3:55525228-55525247 MsG0380014485.01.T01:CDS 40.0%
! TTAGCTTTCATGTGAGCAGT+TGG - Chr3:55525981-55526000 None:intergenic 40.0%
! TTTAAGAAGCGCAAGTCTCT+TGG + Chr3:55522818-55522837 MsG0380014485.01.T01:CDS 40.0%
! TTTAGCTTAGAGCCTTACCT+TGG + Chr3:55525094-55525113 MsG0380014485.01.T01:intron 40.0%
!! ATGTCGACTTGGATAAGGTA+AGG + Chr3:55527585-55527604 MsG0380014485.01.T01:intron 40.0%
!! CAATGGCAAGAGCTTTGAAT+TGG + Chr3:55525024-55525043 MsG0380014485.01.T01:intron 40.0%
!! CAGGCAGATTTTGATGGAAA+TGG + Chr3:55527474-55527493 MsG0380014485.01.T01:intron 40.0%
!! GGTAAGGCTCTAAGCTAAAA+AGG - Chr3:55525093-55525112 None:intergenic 40.0%
!! TGGCTGTTTCTTCTTGTGAT+TGG + Chr3:55523491-55523510 MsG0380014485.01.T01:intron 40.0%
AAGCATACACTCCCAATGAC+TGG + Chr3:55523674-55523693 MsG0380014485.01.T01:intron 45.0%
AGTGTTCACATGAGAAGGCT+TGG + Chr3:55527528-55527547 MsG0380014485.01.T01:CDS 45.0%
ATCATGTGTATGCAACCCCT+TGG + Chr3:55525637-55525656 MsG0380014485.01.T01:intron 45.0%
CACACATGTTGCTGTCATGT+CGG - Chr3:55527201-55527220 None:intergenic 45.0%
CAGCCAAAGCTTTCCTATGA+AGG - Chr3:55527318-55527337 None:intergenic 45.0%
CATTCAGGTGTCTTTCTTGC+TGG + Chr3:55523243-55523262 MsG0380014485.01.T01:intron 45.0%
CCACTTCACAACTTATCTGC+GGG - Chr3:55526045-55526064 None:intergenic 45.0%
CTCATGCTTTCTTCATCCCT+TGG - Chr3:55525248-55525267 None:intergenic 45.0%
CTCCCTCTGTTCCTAATCTT+TGG + Chr3:55527031-55527050 MsG0380014485.01.T01:intron 45.0%
CTGCATTCTTGCATATCAGG+AGG + Chr3:55526568-55526587 MsG0380014485.01.T01:intron 45.0%
CTTATCCAAGTCGACATCGT+TGG - Chr3:55527582-55527601 None:intergenic 45.0%
GAACAGAGGGAGTAGATGAT+GGG - Chr3:55527023-55527042 None:intergenic 45.0%
GAGTTTCTGCCAATACCAAG+TGG - Chr3:55526853-55526872 None:intergenic 45.0%
TCGGGGTTATCAGTACTCTT+TGG + Chr3:55522345-55522364 MsG0380014485.01.T01:CDS 45.0%
TGTTACTGTCGTCAAGGTCT+TGG + Chr3:55525425-55525444 MsG0380014485.01.T01:intron 45.0%
! ACTGATAGTGTTATCGGGGA+AGG + Chr3:55526384-55526403 MsG0380014485.01.T01:CDS 45.0%
! ATGTGACTTGCCAAACTCAG+GGG + Chr3:55523877-55523896 MsG0380014485.01.T01:intron 45.0%
! GAAATATTTGGTTCACCGCC+CGG + Chr3:55524921-55524940 MsG0380014485.01.T01:intron 45.0%
! GAATGTGACTTGCCAAACTC+AGG + Chr3:55523875-55523894 MsG0380014485.01.T01:intron 45.0%
! GATTTGAAGCCGGTGAGTTA+TGG + Chr3:55522569-55522588 MsG0380014485.01.T01:intron 45.0%
! GGATGGTCGAGTAAGTTTTG+AGG + Chr3:55527705-55527724 MsG0380014485.01.T01:CDS 45.0%
! TTGGTGTGTTACTGTCGTCA+AGG + Chr3:55525419-55525438 MsG0380014485.01.T01:intron 45.0%
! TTTGAAGCCGGTGAGTTATG+GGG + Chr3:55522571-55522590 MsG0380014485.01.T01:intron 45.0%
!! CAACGATGTCGACTTGGATA+AGG + Chr3:55527580-55527599 MsG0380014485.01.T01:CDS 45.0%
!! TCCCAATGACTGGTCTATGA+TGG + Chr3:55523684-55523703 MsG0380014485.01.T01:intron 45.0%
!! ATATATATATATATATATCA+AGG + Chr3:55523447-55523466 MsG0380014485.01.T01:intron 5.0%
AACGACCCGTGAGTGAGAAA+TGG - Chr3:55525186-55525205 None:intergenic 50.0%
AATGCAGCCCAACCACTGAA+TGG - Chr3:55526555-55526574 None:intergenic 50.0%
ACGACCCGTGAGTGAGAAAT+GGG - Chr3:55525185-55525204 None:intergenic 50.0%
AGAGAAGAGAAGAGGGCTGA+AGG + Chr3:55524996-55525015 MsG0380014485.01.T01:intron 50.0%
AGGCACAGAGAAGGATAGAC+TGG + Chr3:55525795-55525814 MsG0380014485.01.T01:intron 50.0%
CCCGCAGATAAGTTGTGAAG+TGG + Chr3:55526042-55526061 MsG0380014485.01.T01:intron 50.0%
CGGGGAAGGATGTGTGATTA+AGG + Chr3:55526398-55526417 MsG0380014485.01.T01:CDS 50.0%
GAGAAGAGAAGAGGGCTGAA+GGG + Chr3:55524997-55525016 MsG0380014485.01.T01:intron 50.0%
GCATCAAGCATCTTCGACAG+AGG - Chr3:55526357-55526376 None:intergenic 50.0%
GCTAAAGGCAGTGTTCCACT+TGG + Chr3:55526835-55526854 MsG0380014485.01.T01:intron 50.0%
GGAACAGAGGGAGTAGATGA+TGG - Chr3:55527024-55527043 None:intergenic 50.0%
GGCAGTGTTCCACTTGGTAT+TGG + Chr3:55526841-55526860 MsG0380014485.01.T01:intron 50.0%
GGGCTGCATTCTTGCATATC+AGG + Chr3:55526565-55526584 MsG0380014485.01.T01:intron 50.0%
TACACTACGATGCCGCAAGA+AGG - Chr3:55527110-55527129 None:intergenic 50.0%
TCCCTCCCATTTCTCACTCA+CGG + Chr3:55525177-55525196 MsG0380014485.01.T01:intron 50.0%
TGAGTGAGAAATGGGAGGGA+GGG - Chr3:55525177-55525196 None:intergenic 50.0%
TGCTAGTAGTCCCCTGAGTT+TGG - Chr3:55523890-55523909 None:intergenic 50.0%
! CATTCCCAACGATGTCGACT+TGG + Chr3:55527574-55527593 MsG0380014485.01.T01:CDS 50.0%
! CCTTGTCATTTCAATCCGGG+CGG - Chr3:55524939-55524958 None:intergenic 50.0%
! CTTTGGTTCATGCAGCTGCT+TGG + Chr3:55522362-55522381 MsG0380014485.01.T01:CDS 50.0%
! GTTTGTGGTGGAGGAGTTTC+TGG + Chr3:55524349-55524368 MsG0380014485.01.T01:intron 50.0%
! TTGGTGCCTTAGCGATGGTA+AGG + Chr3:55522837-55522856 MsG0380014485.01.T01:intron 50.0%
ACCCGTGAGTGAGAAATGGG+AGG - Chr3:55525182-55525201 None:intergenic 55.0%
CCCGTGAGTGAGAAATGGGA+GGG - Chr3:55525181-55525200 None:intergenic 55.0%
CCCTCCCATTTCTCACTCAC+GGG + Chr3:55525178-55525197 MsG0380014485.01.T01:intron 55.0%
CCGCCCGGATTGAAATGACA+AGG + Chr3:55524936-55524955 MsG0380014485.01.T01:intron 55.0%
GAGGGCTGAAGGGATAGCAA+TGG + Chr3:55525007-55525026 MsG0380014485.01.T01:intron 55.0%
GTGAGTGAGAAATGGGAGGG+AGG - Chr3:55525178-55525197 None:intergenic 55.0%
TGAGAAATGGGAGGGAGGGA+GGG - Chr3:55525173-55525192 None:intergenic 55.0%
! GTGTTGGTCAGGCACAGAGA+AGG + Chr3:55525786-55525805 MsG0380014485.01.T01:intron 55.0%
!! GTCTCTTGGTGCCTTAGCGA+TGG + Chr3:55522832-55522851 MsG0380014485.01.T01:CDS 55.0%
AAATGGGAGGGAGGGAGGGA+GGG - Chr3:55525169-55525188 None:intergenic 60.0%
GTGAGAAATGGGAGGGAGGG+AGG - Chr3:55525174-55525193 None:intergenic 60.0%
GAAATGGGAGGGAGGGAGGG+AGG - Chr3:55525170-55525189 None:intergenic 65.0%
GGAGGGAGGGAGGGAGGGAG+GGG - Chr3:55525164-55525183 None:intergenic 75.0%
GGGAGGGAGGGAGGGAGGGA+GGG - Chr3:55525165-55525184 None:intergenic 75.0%
TGGGAGGGAGGGAGGGAGGG+AGG - Chr3:55525166-55525185 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 55522187 55527855 55522187 ID=MsG0380014485.01;Name=MsG0380014485.01
Chr3 mRNA 55522187 55527855 55522187 ID=MsG0380014485.01.T01;Parent=MsG0380014485.01;Name=MsG0380014485.01.T01;_AED=0.53;_eAED=0.84;_QI=0|0|0|1|0.9|0.90|11|0|331
Chr3 exon 55522187 55522207 55522187 ID=MsG0380014485.01.T01:exon:18358;Parent=MsG0380014485.01.T01
Chr3 exon 55522316 55522383 55522316 ID=MsG0380014485.01.T01:exon:18359;Parent=MsG0380014485.01.T01
Chr3 exon 55522493 55522580 55522493 ID=MsG0380014485.01.T01:exon:18360;Parent=MsG0380014485.01.T01
Chr3 exon 55522716 55522853 55522716 ID=MsG0380014485.01.T01:exon:18361;Parent=MsG0380014485.01.T01
Chr3 exon 55524457 55524545 55524457 ID=MsG0380014485.01.T01:exon:18362;Parent=MsG0380014485.01.T01
Chr3 exon 55525226 55525295 55525226 ID=MsG0380014485.01.T01:exon:18363;Parent=MsG0380014485.01.T01
Chr3 exon 55526336 55526419 55526336 ID=MsG0380014485.01.T01:exon:18364;Parent=MsG0380014485.01.T01
Chr3 exon 55526692 55526756 55526692 ID=MsG0380014485.01.T01:exon:18365;Parent=MsG0380014485.01.T01
Chr3 exon 55526867 55526927 55526867 ID=MsG0380014485.01.T01:exon:18366;Parent=MsG0380014485.01.T01
Chr3 exon 55527477 55527601 55527477 ID=MsG0380014485.01.T01:exon:18367;Parent=MsG0380014485.01.T01
Chr3 exon 55527669 55527855 55527669 ID=MsG0380014485.01.T01:exon:18368;Parent=MsG0380014485.01.T01
Chr3 CDS 55522187 55522207 55522187 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55522316 55522383 55522316 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55522493 55522580 55522493 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55522716 55522853 55522716 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55524457 55524545 55524457 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55525226 55525295 55525226 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55526336 55526419 55526336 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55526692 55526756 55526692 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55526867 55526927 55526867 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55527477 55527601 55527477 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Chr3 CDS 55527669 55527855 55527669 ID=MsG0380014485.01.T01:cds;Parent=MsG0380014485.01.T01
Gene Sequence

>MsG0380014485.01.T01

ATGATAATTTCATCCCATAAGGTCTGTCCTTTAATGTTGAGAATATTTTTTCGGGGTTATCAGTACTCTTTGGTTCATGCAGCTGCTTGTGCATATGATAGAGCTGCAATTAAGTTCAGAGGAGTAGAGGCAGATATAAATTTCAACATTGAAGATTATGAAGAGGATTTGAAGCCGGTAGTTCGTCTATGTTTCTTAATCTCAGGTATCAACTCTTTCAAGTTTTTCATGGCATACAAAGGATTTTTTATGGTCAACGATGAGCTTCTTCTGCAAGTATTTAAGAAGCGCAAGTCTCTTGGTGCCTTAGCGATGGAATGCAATTACAAACCAATTGATAGAGAAGGATTTGTTTGGTTGGTGGAATTTGAAGAAATGTTGGTTAAAATTCGTATAGACCTACTAATGTGTAAAGCTCTAATGCCAAGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGAAAACTCTTCGTACTCAACTGCGATATTTGCCTCTGTCGAAGATGCTTGATGCTGATATCACTGATAGTGTTATCGGGGAAGGATGTGTGATTAAGCTAATGTTTGACTTAAGAAAGCAGTTGAAATGCTTAGATGCAGCTCAATTCATTCATTGGCTTGTAAACTCCCGTATCAAAAGAGCAATTGTTGACAAGAATGCTAGAATTGGAGAAAATGTGAAGGCAGATTTTGATGGAAATGGCACCTTCAAATGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAAAAGCATTCCCAACGATGTCGACTTGGATAAGTTACTCTTTTATAACATCTAATATTGTTTTGTTAAAGGATGGTCGAGTAAGTTTTGAGGAATTTAAGGCAATGATGAAGACAAGAGGAGATTGGAAAATGGCATCTAGACAATATTTAAAAGCATTTCTAAATGCGTTAAGCTTCAGAATGTTTAAAGACAAATCTACGGGAGTAGCAACTAACTAA
Protein sequence

>MsG0380014485.01.T01

MIISSHKVCPLMLRIFFRGYQYSLVHAAACAYDRAAIKFRGVEADINFNIEDYEEDLKPVVRLCFLISGINSFKFFMAYKGFFMVNDELLLQVFKKRKSLGALAMECNYKPIDREGFVWLVEFEEMLVKIRIDLLMCKALMPRDEESMSDEAIWKTLRTQLRYLPLSKMLDADITDSVIGEGCVIKLMFDLRKQLKCLDAAQFIHWLVNSRIKRAIVDKNARIGENVKADFDGNGTFKCEEFITMSVHMRRLGNDEHLTKAFPTMSTWISYSFITSNIVLLKDGRVSFEEFKAMMKTRGDWKMASRQYLKAFLNALSFRMFKDKSTGVATN*