AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014534.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014534.01.T01 MTR_3g058940 96.181 419 16 0 1 419 1 419 0.0 839
MsG0380014534.01.T01 MTR_2g005570 88.783 419 43 3 2 419 3 418 0.0 749
MsG0380014534.01.T01 MTR_2g005570 88.544 419 44 3 2 419 3 418 0.0 748
MsG0380014534.01.T01 MTR_4g134770 79.286 420 85 2 1 419 1 419 0.0 667
MsG0380014534.01.T01 MTR_4g134770 81.039 385 71 2 36 419 1 384 0.0 622
MsG0380014534.01.T01 MTR_1g088850 27.830 212 142 4 1 203 1 210 1.05e-13 70.5
MsG0380014534.01.T01 MTR_3g064700 26.471 170 116 4 40 201 40 208 4.58e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014534.01.T01 AT1G09640 75.952 420 94 4 1 419 1 414 0.0 640
MsG0380014534.01.T01 AT1G57720 75.476 420 95 5 1 419 1 413 0.0 627
MsG0380014534.01.T01 AT1G57720 75.476 420 95 5 1 419 1 413 0.0 627
MsG0380014534.01.T01 AT1G09640 69.118 204 62 1 1 203 1 204 7.47e-98 293
MsG0380014534.01.T01 AT1G09640 86.301 73 9 1 348 419 193 265 2.28e-35 131
MsG0380014534.01.T01 AT2G30870 30.682 176 96 7 1 160 1 166 4.24e-14 71.6
MsG0380014534.01.T01 AT3G62760 26.190 210 144 4 1 201 1 208 1.76e-13 69.7
MsG0380014534.01.T01 AT2G30860 31.361 169 104 4 1 160 1 166 8.91e-12 64.7

Find 137 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTTTGACTTGCAGGATTC+TGG 0.045791 3:-56181325 MsG0380014534.01.T01:intron
CCGAATATCTTTCGGAAATT+TGG 0.136668 3:+56181814 None:intergenic
TGGATCAGAGCCTCCATTTA+AGG 0.199866 3:-56181147 MsG0380014534.01.T01:CDS
TTTGGAAAGATGCTTATAAT+TGG 0.211636 3:-56181167 MsG0380014534.01.T01:CDS
ACAGCATCCAACTTGTATTT+AGG 0.219925 3:-56181916 MsG0380014534.01.T01:CDS
AGGATTCTTGGGTTTGGGCT+TGG 0.229246 3:+56181636 None:intergenic
TCTGATTTAGCCACTTTCTT+TGG 0.234756 3:+56181700 None:intergenic
GGATTCTTGGGTTTGGGCTT+GGG 0.257138 3:+56181637 None:intergenic
CTCTTCAGCATCTACAACTT+TGG 0.257231 3:+56181666 None:intergenic
CACAACCCCTTCACCTTAAA+TGG 0.280661 3:+56181134 None:intergenic
TCCTCCAAGCAAGATGGTTT+TGG 0.282341 3:-56181602 MsG0380014534.01.T01:CDS
CAACTTACTGGAGGAAAGTA+TGG 0.282441 3:+56182301 None:intergenic
CTGGCTCGCAAGTATGCTTT+TGG 0.282861 3:-56181185 MsG0380014534.01.T01:CDS
AGTTGTGGGCTTGGATTCCT+TGG 0.298977 3:+56181732 None:intergenic
TTTATCAACATGAATCCTAT+TGG 0.311982 3:-56183706 MsG0380014534.01.T01:CDS
AAGAAGATCTAGAGGATTCT+TGG 0.312345 3:+56181624 None:intergenic
ATTTGAGGGAGAGGCTCTTT+TGG 0.313654 3:-56180973 MsG0380014534.01.T01:CDS
TTGGGTGAAAACAATTTGTT+TGG 0.314427 3:-56182971 MsG0380014534.01.T01:CDS
CCAAATTTCCGAAAGATATT+CGG 0.318144 3:-56181814 MsG0380014534.01.T01:CDS
TCTTCAGCATCTACAACTTT+GGG 0.319074 3:+56181667 None:intergenic
ATCTAGAGGATTCTTGGGTT+TGG 0.321575 3:+56181630 None:intergenic
CGTTTGACTTGCAGGATTCT+GGG 0.329918 3:-56181324 MsG0380014534.01.T01:intron
TCTAGAGGATTCTTGGGTTT+GGG 0.331606 3:+56181631 None:intergenic
TTCGTTACAGGTTCCGGTCT+TGG 0.337595 3:-56183572 MsG0380014534.01.T01:intron
TGGATTCCTTGGGCTGGGTA+GGG 0.340594 3:+56181743 None:intergenic
TTGGATTCCTTGGGCTGGGT+AGG 0.340967 3:+56181742 None:intergenic
TGCATCTTTAGTTGTGGGCT+TGG 0.341316 3:+56181723 None:intergenic
GAAACACCAATCTGAAAATC+TGG 0.344130 3:+56183745 None:intergenic
TTTGGTGCATCTTTAGTTGT+GGG 0.356845 3:+56181718 None:intergenic
TGGGCTTGGATTCCTTGGGC+TGG 0.367185 3:+56181737 None:intergenic
GGATTCCTTGGGCTGGGTAG+GGG 0.368128 3:+56181744 None:intergenic
AATACTAATACCTTTCCAAT+AGG 0.377027 3:+56183691 None:intergenic
CTCATGTTGAGAGATACTTC+TGG 0.381009 3:-56181852 MsG0380014534.01.T01:CDS
CATTCATCCATGATAAACTT+TGG 0.388731 3:+56181089 None:intergenic
CTTTGCTGCAGTTGCACGAT+TGG 0.396776 3:-56182990 MsG0380014534.01.T01:intron
CATAGCCTTTCAATGGGAAC+TGG 0.400273 3:+56180914 None:intergenic
CAGCGGTGTCAAAGTTGAAT+TGG 0.403489 3:-56183770 MsG0380014534.01.T01:CDS
CATTTAAGGTGAAGGGGTTG+TGG 0.403530 3:-56181133 MsG0380014534.01.T01:CDS
TAACCTGGCCGAATATCTTT+CGG 0.403734 3:+56181806 None:intergenic
CTCTCAAAGACAGGACCATC+AGG 0.427780 3:+56183544 None:intergenic
AGAAGATCTAGAGGATTCTT+GGG 0.430254 3:+56181625 None:intergenic
GACCTCACGGAAGTTGGTCT+TGG 0.430255 3:+56181552 None:intergenic
TGGTGGGTTTCTTCAAAGAA+TGG 0.433281 3:-56181210 MsG0380014534.01.T01:CDS
GTCATTGAAGAGAGCATTTG+AGG 0.435935 3:-56182007 MsG0380014534.01.T01:CDS
GTTTCTTCAAAGAATGGATC+TGG 0.437648 3:-56181204 MsG0380014534.01.T01:CDS
TTTAGGTTTCGCTCAACTCT+TGG 0.441769 3:-56181899 MsG0380014534.01.T01:CDS
CTTTGGTGCATCTTTAGTTG+TGG 0.442321 3:+56181717 None:intergenic
TGGATCATCTCCCATTGATC+AGG 0.442424 3:-56182951 MsG0380014534.01.T01:intron
AGAGATTCCAAAGTTTATCA+TGG 0.445357 3:-56181096 MsG0380014534.01.T01:CDS
CAGTTCCCATTGAAAGGCTA+TGG 0.446988 3:-56180913 MsG0380014534.01.T01:three_prime_UTR
ATCCAGAGGGATATTCTCTC+TGG 0.453121 3:-56181292 MsG0380014534.01.T01:CDS
GGGGTCTTAGCAGATGGAAT+AGG 0.453847 3:+56181763 None:intergenic
ACAAAACCATAGCCTTTCAA+TGG 0.454075 3:+56180907 None:intergenic
GGGCTTGGATTCCTTGGGCT+GGG 0.454427 3:+56181738 None:intergenic
GTTGTGGGCTTGGATTCCTT+GGG 0.454512 3:+56181733 None:intergenic
AAAAGAGCCTCTCCCTCAAA+TGG 0.463286 3:+56180975 None:intergenic
TAGCTTCAGTTTGCTTAACC+TGG 0.466563 3:+56181791 None:intergenic
TGTTTCCCTTCGGAGCGTGC+AGG 0.478892 3:+56183827 None:intergenic
TTTCCGAAAGATATTCGGCC+AGG 0.479571 3:-56181809 MsG0380014534.01.T01:CDS
GGATTCATGTTGATAAATTG+AGG 0.482185 3:+56183712 None:intergenic
CTCACAATACCTACCTGGTT+GGG 0.483114 3:-56181966 MsG0380014534.01.T01:CDS
TTTGCTGCAGTTGCACGATT+GGG 0.483835 3:-56182989 MsG0380014534.01.T01:intron
TAAGTTGGTACTCACTTCAC+AGG 0.485066 3:+56178542 None:intergenic
GGATTTAATAACTGAGCATA+AGG 0.487445 3:+56178564 None:intergenic
CAAAGTTGTAGATGCTGAAG+AGG 0.496485 3:-56181665 MsG0380014534.01.T01:CDS
TCATCCAAAACCATCTTGCT+TGG 0.496743 3:+56181598 None:intergenic
ATATCTTTCGGAAATTTGGC+TGG 0.499145 3:+56181818 None:intergenic
GTAGATCCTGCACGCTCCGA+AGG 0.503479 3:-56183833 MsG0380014534.01.T01:intron
GATTGCGACCTCACGGAAGT+TGG 0.507774 3:+56181546 None:intergenic
ATCGCATTGCTCTCAAAGAC+AGG 0.508098 3:+56183535 None:intergenic
GAGCCTCCATTTAAGGTGAA+GGG 0.508653 3:-56181140 MsG0380014534.01.T01:CDS
TCCAAAACCATCTTGCTTGG+AGG 0.513832 3:+56181601 None:intergenic
CAAAACCATAGCCTTTCAAT+GGG 0.517488 3:+56180908 None:intergenic
TTCCGTGAGGTCGCAATCAA+AGG 0.519400 3:-56181541 MsG0380014534.01.T01:intron
TAAAGATGCACCAAAGAAAG+TGG 0.525965 3:-56181710 MsG0380014534.01.T01:CDS
TCTTCTTCCTCCAAGCAAGA+TGG 0.531928 3:-56181608 MsG0380014534.01.T01:CDS
TATGGGGAAAATCCATGTCT+TGG 0.532882 3:+56182319 None:intergenic
CCTTGCTCACAATACCTACC+TGG 0.540810 3:-56181971 MsG0380014534.01.T01:CDS
AGCGAAACCTAAATACAAGT+TGG 0.546647 3:+56181909 None:intergenic
TACCTTTGATTGCGACCTCA+CGG 0.549156 3:+56181539 None:intergenic
AAAATCTTCAATCATCTGAC+TGG 0.550866 3:+56181001 None:intergenic
TGACACTGAACAAGGTTGGT+GGG 0.551452 3:-56181226 MsG0380014534.01.T01:CDS
AGTTCCCAGTTCCCATTGAA+AGG 0.552228 3:-56180919 MsG0380014534.01.T01:three_prime_UTR
TTCAGGCCCACGTTGAACAA+TGG 0.553331 3:-56182393 MsG0380014534.01.T01:intron
GCTCACAATACCTACCTGGT+TGG 0.554794 3:-56181967 MsG0380014534.01.T01:CDS
TTCGTGACACTGAACAAGGT+TGG 0.558246 3:-56181230 MsG0380014534.01.T01:CDS
AAGTTGTATCGGCCAAGACA+TGG 0.560371 3:-56182331 MsG0380014534.01.T01:CDS
AGAGCCTCCATTTAAGGTGA+AGG 0.562476 3:-56181141 MsG0380014534.01.T01:CDS
CTTGGAGGAAGAAGATCTAG+AGG 0.562656 3:+56181616 None:intergenic
GTAGGTATTGTGAGCAAGGT+GGG 0.563350 3:+56181975 None:intergenic
TTCTTTCGTGACACTGAACA+AGG 0.563971 3:-56181234 MsG0380014534.01.T01:CDS
CCAGGTAGGTATTGTGAGCA+AGG 0.565174 3:+56181971 None:intergenic
AACCAGAGAGAATATCCCTC+TGG 0.572768 3:+56181290 None:intergenic
AACTTACTGGAGGAAAGTAT+GGG 0.577057 3:+56182302 None:intergenic
ACAACATTCTGAAGTTGTAT+CGG 0.578233 3:-56182342 MsG0380014534.01.T01:CDS
CAACATGAATCCTATTGGAA+AGG 0.578803 3:-56183701 MsG0380014534.01.T01:intron
GTGACACTGAACAAGGTTGG+TGG 0.579111 3:-56181227 MsG0380014534.01.T01:CDS
TTTAGTTGTGCATCAATCTG+TGG 0.579605 3:+56178678 MsG0380014535.01.T01:five_prime_UTR
TAACTGAGCATAAGGACAGA+AGG 0.581232 3:+56178572 None:intergenic
CCATCAGGAGTTTCCAAGAC+CGG 0.583824 3:+56183559 None:intergenic
TGCTGTTATAATGTCAGCAA+GGG 0.586215 3:+56181933 None:intergenic
AGCAATGCGATGGCTCGCTA+TGG 0.587860 3:-56183523 MsG0380014534.01.T01:intron
CCGGTCTTGGAAACTCCTGA+TGG 0.589673 3:-56183559 MsG0380014534.01.T01:CDS
TAGATCCTGCACGCTCCGAA+GGG 0.592138 3:-56183832 MsG0380014534.01.T01:CDS
AGCCTCCATTTAAGGTGAAG+GGG 0.592740 3:-56181139 MsG0380014534.01.T01:CDS
ACGCTCTTTCTGAGCTTCGT+CGG 0.595731 3:+56181025 None:intergenic
GTCTTAGCAGATGGAATAGG+TGG 0.598600 3:+56181766 None:intergenic
CTGGGACATGTATGATCCAG+AGG 0.600612 3:-56181306 MsG0380014534.01.T01:CDS
TGTCTAAATGTAGGTAGAGG+AGG 0.601960 3:-56182040 MsG0380014534.01.T01:intron
TTCGTCGGAGATGTCAACCT+TGG 0.603692 3:+56181040 None:intergenic
ATAGCCTTTCAATGGGAACT+GGG 0.607982 3:+56180915 None:intergenic
GGGTAACAGAATGCCCAACC+AGG 0.610540 3:+56181953 None:intergenic
TGGGTAGGGGTCTTAGCAGA+TGG 0.610827 3:+56181757 None:intergenic
ATGCTGTTATAATGTCAGCA+AGG 0.613579 3:+56181932 None:intergenic
ACTTTGGAATCTCTTGTCCA+CGG 0.614824 3:+56181105 None:intergenic
TTTGACACCGCTGTATTCAG+CGG 0.616507 3:+56183780 None:intergenic
TGTCTTTGAGAGCAATGCGA+TGG 0.618092 3:-56183533 MsG0380014534.01.T01:CDS
ATCAATCCATTGTTCAACGT+GGG 0.621694 3:+56182387 None:intergenic
TGAGAGATACTTCTGGACCT+TGG 0.623673 3:-56181845 MsG0380014534.01.T01:CDS
CAGAAGTATCTCTCAACATG+AGG 0.629855 3:+56181853 None:intergenic
CATGGATGAATGCTATGACA+TGG 0.631015 3:-56181078 MsG0380014534.01.T01:CDS
TAAGACCCCTACCCAGCCCA+AGG 0.634401 3:-56181749 MsG0380014534.01.T01:CDS
GGTAGGTATTGTGAGCAAGG+TGG 0.640768 3:+56181974 None:intergenic
AAGTTGGTACTCACTTCACA+GGG 0.646341 3:+56178543 None:intergenic
GAAATTTGGCTGGTTCACCA+AGG 0.651913 3:+56181828 None:intergenic
AACCCCTTCACCTTAAATGG+AGG 0.653598 3:+56181137 None:intergenic
TGGGACATGTATGATCCAGA+GGG 0.668464 3:-56181305 MsG0380014534.01.T01:CDS
CTGATTGCCGCTGAATACAG+CGG 0.678144 3:-56183787 MsG0380014534.01.T01:CDS
ATGACATGGAGCTGTATGAG+TGG 0.681725 3:-56181064 MsG0380014534.01.T01:CDS
AATCAATCCATTGTTCAACG+TGG 0.688879 3:+56182386 None:intergenic
ACATACGCAACGCATCACAC+AGG 0.690910 3:-56184017 None:intergenic
AGAATGCTGATAAACACCAA+AGG 0.692849 3:-56178650 MsG0380014534.01.T01:three_prime_UTR
ACTTACTGGAGGAAAGTATG+GGG 0.693003 3:+56182303 None:intergenic
AACAGAATGCCCAACCAGGT+AGG 0.711223 3:+56181957 None:intergenic
CTCAACATGAGGAAACTCTG+AGG 0.714280 3:+56181864 None:intergenic
CACCAAGACCAACTTCCGTG+AGG 0.739745 3:-56181554 MsG0380014534.01.T01:CDS
GGAGCTGTATGAGTGGACCA+AGG 0.785376 3:-56181057 MsG0380014534.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAAAAATTTAATTGAAG+AGG - Chr3:56181889-56181908 MsG0380014534.01.T01:CDS 10.0%
!!! ATGTATTTTTTTTATTTTGT+TGG - Chr3:56181936-56181955 MsG0380014534.01.T01:CDS 10.0%
!! AATTGAAAAGAAAAATGAAA+AGG - Chr3:56183670-56183689 MsG0380014534.01.T01:intron 15.0%
!! ATTATATTATAGCAGAAAAT+AGG + Chr3:56181643-56181662 None:intergenic 15.0%
!!! AGATTAGTTATTAATAACTA+AGG + Chr3:56178620-56178639 None:intergenic 15.0%
!!! TAATCTAATTGCAAATTTTT+TGG - Chr3:56178634-56178653 MsG0380014534.01.T01:three_prime_UTR 15.0%
!!! TTATTTACAAGTTTTATGTT+GGG + Chr3:56182667-56182686 None:intergenic 15.0%
!! AAACTATAACAGAAACTATT+AGG - Chr3:56179333-56179352 MsG0380014534.01.T01:intron 20.0%
!! AATAATATTAGAGAGAGTTT+CGG - Chr3:56179168-56179187 MsG0380014534.01.T01:intron 20.0%
!! AATCGAAGTAATTGAAAATA+AGG + Chr3:56178594-56178613 None:intergenic 20.0%
!! ACTTAAATTTGAATTCAGAT+TGG - Chr3:56183724-56183743 MsG0380014534.01.T01:CDS 20.0%
!! ATATAGTATCACACTAAAAA+TGG + Chr3:56180012-56180031 None:intergenic 20.0%
!! ATCGAAGTAATTGAAAATAA+GGG + Chr3:56178593-56178612 None:intergenic 20.0%
!! CAACATAAAACTTGTAAATA+AGG - Chr3:56182666-56182685 MsG0380014534.01.T01:intron 20.0%
!! CTATATGCATTATTAATATG+TGG - Chr3:56180026-56180045 MsG0380014534.01.T01:intron 20.0%
!! GTCACATTTAAAAAGAAAAA+AGG + Chr3:56183590-56183609 None:intergenic 20.0%
!! TAAGCATGTATGAAATTTAT+TGG - Chr3:56181845-56181864 MsG0380014534.01.T01:CDS 20.0%
!! TCTAAACTCTAGTAATATAT+TGG + Chr3:56182386-56182405 None:intergenic 20.0%
!! TTAATACTTCAGATTGAATT+AGG + Chr3:56182736-56182755 None:intergenic 20.0%
!! TTAGACACAAATTTCAAAAA+CGG + Chr3:56180441-56180460 None:intergenic 20.0%
!!! AATGTCAAAATTTGTTAATG+AGG - Chr3:56181120-56181139 MsG0380014534.01.T01:CDS 20.0%
!!! AGTCTATGATGTTATTTAAT+TGG - Chr3:56179001-56179020 MsG0380014534.01.T01:intron 20.0%
!!! AGTTTCTGTTATAGTTTTTT+TGG + Chr3:56179330-56179349 MsG0380014535.01.T01:CDS 20.0%
!!! ATTTTATTATGATTCGTTAC+AGG - Chr3:56178910-56178929 MsG0380014534.01.T01:intron 20.0%
!!! CTTATTTACAAGTTTTATGT+TGG + Chr3:56182668-56182687 None:intergenic 20.0%
!!! GTTTCTGTTATAGTTTTTTT+GGG + Chr3:56179329-56179348 MsG0380014535.01.T01:CDS 20.0%
!!! TATAATGTTTTATGATCAGT+TGG - Chr3:56180309-56180328 MsG0380014534.01.T01:intron 20.0%
!!! TTGAAATGTTTTCATGATTA+TGG - Chr3:56179716-56179735 MsG0380014534.01.T01:intron 20.0%
!!! TTTTGCTTAAAAGGTTATTA+TGG + Chr3:56183887-56183906 None:intergenic 20.0%
!!! TTTTTTTTTTTTTCAGTTGC+AGG - Chr3:56182193-56182212 MsG0380014534.01.T01:intron 20.0%
! AAAAAATGTACCTGATCAAT+GGG + Chr3:56179556-56179575 MsG0380014535.01.T01:CDS 25.0%
! AAAACTCTTGAGGAAAAATA+TGG + Chr3:56182277-56182296 None:intergenic 25.0%
! AAAATGTCAAGATAATAGAC+AGG - Chr3:56182615-56182634 MsG0380014534.01.T01:intron 25.0%
! AAACACCTCATAGTTTAATT+TGG - Chr3:56182515-56182534 MsG0380014534.01.T01:intron 25.0%
! AAATATAGAACCTGTAATAC+TGG + Chr3:56181814-56181833 None:intergenic 25.0%
! AAATCTACACATACTAAATG+CGG + Chr3:56182077-56182096 None:intergenic 25.0%
! AAATGTGACAATAAACAAAG+TGG - Chr3:56183601-56183620 MsG0380014534.01.T01:intron 25.0%
! AATACTAATACCTTTCCAAT+AGG + Chr3:56178806-56178825 MsG0380014535.01.T01:CDS 25.0%
! AATATGTGGTTTATCTTTGT+TGG - Chr3:56180040-56180059 MsG0380014534.01.T01:intron 25.0%
! AATCATAAGTCATTGAACTT+GGG + Chr3:56182345-56182364 None:intergenic 25.0%
! AGAAATGAATGATATGAATG+AGG + Chr3:56182805-56182824 None:intergenic 25.0%
! AGTAGAAACATAAAAATGCT+AGG - Chr3:56182548-56182567 MsG0380014534.01.T01:intron 25.0%
! ATAATATTAGAGAGAGTTTC+GGG - Chr3:56179169-56179188 MsG0380014534.01.T01:intron 25.0%
! ATTCCACCAAAAAAAGATTA+TGG + Chr3:56179644-56179663 MsG0380014535.01.T01:CDS 25.0%
! CTACAGTATATTCATCATAA+AGG + Chr3:56181095-56181114 None:intergenic 25.0%
! CTAGAATAGTATATTTCCAA+AGG + Chr3:56181052-56181071 None:intergenic 25.0%
! GAAAAATATGGTTGTCTATA+TGG + Chr3:56182265-56182284 None:intergenic 25.0%
! GATACAAATCATAACCTAAA+TGG + Chr3:56183143-56183162 None:intergenic 25.0%
! GTAACTTAAATGTTTGATTG+TGG - Chr3:56181697-56181716 MsG0380014534.01.T01:CDS 25.0%
! GTTAGAATATTCATTTCCAT+TGG + Chr3:56183435-56183454 None:intergenic 25.0%
! TAAAAAAGATGGTAGGAAAT+AGG - Chr3:56179204-56179223 MsG0380014534.01.T01:intron 25.0%
! TAATTGAGATTGATATTTCC+AGG + Chr3:56182773-56182792 None:intergenic 25.0%
! TAGACACAAATTTCAAAAAC+GGG + Chr3:56180440-56180459 None:intergenic 25.0%
! TCACAACATTATGTTTGAAA+TGG - Chr3:56182147-56182166 MsG0380014534.01.T01:intron 25.0%
! TCGAAGTAATTGAAAATAAG+GGG + Chr3:56178592-56178611 None:intergenic 25.0%
! TGAAATTTGTGTCTAAATGT+AGG - Chr3:56180445-56180464 MsG0380014534.01.T01:intron 25.0%
! TGAAGAATCTATGCAAAAAT+TGG + Chr3:56182892-56182911 None:intergenic 25.0%
! TGGTCTATGATAGAATATTA+TGG - Chr3:56179390-56179409 MsG0380014534.01.T01:intron 25.0%
! TTCACTTATAATCGCAAAAT+AGG + Chr3:56179610-56179629 MsG0380014535.01.T01:CDS 25.0%
! TTCCACCAAAAAAAGATTAT+GGG + Chr3:56179643-56179662 MsG0380014535.01.T01:CDS 25.0%
! TTTAATTGAAGAGGCTAAAT+TGG - Chr3:56181898-56181917 MsG0380014534.01.T01:CDS 25.0%
! TTTATCAACATGAATCCTAT+TGG - Chr3:56178788-56178807 MsG0380014534.01.T01:intron 25.0%
! TTTGGAAAGATGCTTATAAT+TGG - Chr3:56181327-56181346 MsG0380014534.01.T01:intron 25.0%
!! CAATCTGAAGTATTAACTAT+TGG - Chr3:56182740-56182759 MsG0380014534.01.T01:intron 25.0%
!! GTAAGAATAGTTGATATGTT+AGG - Chr3:56182019-56182038 MsG0380014534.01.T01:CDS 25.0%
!! TACTATTCTAGCAATGTTTT+TGG - Chr3:56181061-56181080 MsG0380014534.01.T01:CDS 25.0%
!! TAGTTAAAGTCGAGATTTTA+CGG + Chr3:56179977-56179996 None:intergenic 25.0%
!!! AGTACTTAGTTTGTTTGATT+TGG - Chr3:56182441-56182460 MsG0380014534.01.T01:intron 25.0%
!!! ATGGATTGATTTTTCTTCTA+CGG - Chr3:56180120-56180139 MsG0380014534.01.T01:intron 25.0%
!!! CTATACCCATAATCTTTTTT+TGG - Chr3:56179635-56179654 MsG0380014534.01.T01:intron 25.0%
!!! CTTGACATTTTGATTCAAAA+AGG + Chr3:56182606-56182625 None:intergenic 25.0%
!!! GCAATTTCAAGATTTTAAGT+TGG + Chr3:56183970-56183989 None:intergenic 25.0%
!!! TATTAATTTGCTTCGTTAAC+TGG - Chr3:56180243-56180262 MsG0380014534.01.T01:intron 25.0%
!!! TTTAAGTTTTTGTAGCTTCT+AGG - Chr3:56181006-56181025 MsG0380014534.01.T01:CDS 25.0%
!!! TTTGCAGTTTTTTGCTTAAA+AGG + Chr3:56183896-56183915 None:intergenic 25.0%
AAAACTTGAGTAGTCATGAT+AGG + Chr3:56183244-56183263 None:intergenic 30.0%
AAAATCTTCAATCATCTGAC+TGG + Chr3:56181496-56181515 None:intergenic 30.0%
AACGGGAAAAATTCAGTAAA+AGG + Chr3:56180423-56180442 None:intergenic 30.0%
AATTAGGAGTTGTCACATTT+AGG + Chr3:56182720-56182739 None:intergenic 30.0%
ACAGCAAATTACAAGTAGAA+TGG + Chr3:56180081-56180100 None:intergenic 30.0%
ACGGGAAAAATTCAGTAAAA+GGG + Chr3:56180422-56180441 None:intergenic 30.0%
ACTATACGAGTTGTACTTAT+GGG + Chr3:56181991-56182010 None:intergenic 30.0%
AGACTTAGAGATTAATGAGT+TGG - Chr3:56179358-56179377 MsG0380014534.01.T01:intron 30.0%
AGAGATTCCAAAGTTTATCA+TGG - Chr3:56181398-56181417 MsG0380014534.01.T01:intron 30.0%
AGATATTAACATACGACAAG+CGG + Chr3:56178888-56178907 MsG0380014535.01.T01:CDS 30.0%
AGCACCTATAGTAAAAAAGA+TGG - Chr3:56179193-56179212 MsG0380014534.01.T01:intron 30.0%
ATAGGAGAATATAATAAGCG+TGG - Chr3:56179086-56179105 MsG0380014534.01.T01:intron 30.0%
ATTCTTCAGTTAAGTTAGAC+AGG - Chr3:56182904-56182923 MsG0380014534.01.T01:intron 30.0%
CAAAAAATGTACCTGATCAA+TGG + Chr3:56179557-56179576 MsG0380014535.01.T01:CDS 30.0%
CAAGTTCAATGACTTATGAT+TGG - Chr3:56182344-56182363 MsG0380014534.01.T01:CDS 30.0%
CAATCATAAGTCATTGAACT+TGG + Chr3:56182346-56182365 None:intergenic 30.0%
CAATGATTATGACGATTATG+AGG + Chr3:56182985-56183004 None:intergenic 30.0%
CACATCCAAATTAAACTATG+AGG + Chr3:56182523-56182542 None:intergenic 30.0%
CATAATCTTGCCAATAACAA+AGG - Chr3:56182580-56182599 MsG0380014534.01.T01:intron 30.0%
CATTCATCCATGATAAACTT+TGG + Chr3:56181408-56181427 None:intergenic 30.0%
CCAAATTTCCGAAAGATATT+CGG - Chr3:56180680-56180699 MsG0380014534.01.T01:intron 30.0%
CCTATAGTAAAAAAGATGGT+AGG - Chr3:56179197-56179216 MsG0380014534.01.T01:intron 30.0%
CGCTTATTATATTCTCCTAT+TGG + Chr3:56179086-56179105 MsG0380014535.01.T01:CDS 30.0%
GAAACTTAAATGCTTGATTG+TGG - Chr3:56181763-56181782 MsG0380014534.01.T01:CDS 30.0%
GACAGGCATAAAATTTAAGA+TGG - Chr3:56182632-56182651 MsG0380014534.01.T01:intron 30.0%
GGATTTAATAACTGAGCATA+AGG + Chr3:56183933-56183952 None:intergenic 30.0%
GTATCACTAACATCTAATGA+TGG - Chr3:56183512-56183531 MsG0380014534.01.T01:intron 30.0%
TAACATCATATGCAACTTAC+TGG + Chr3:56180208-56180227 None:intergenic 30.0%
TACAAGTAGAATGGAATATC+AGG + Chr3:56180072-56180091 None:intergenic 30.0%
TACTATACGAGTTGTACTTA+TGG + Chr3:56181992-56182011 None:intergenic 30.0%
TCATAATCATTGTCATCTGA+AGG - Chr3:56182993-56183012 MsG0380014534.01.T01:intron 30.0%
TGATTGTAGCTTATATCCTT+TGG - Chr3:56181033-56181052 MsG0380014534.01.T01:CDS 30.0%
TGGTTTATCTTTGTTGGAAA+TGG - Chr3:56180046-56180065 MsG0380014534.01.T01:intron 30.0%
TTTGCGATTATAAGTGAATG+TGG - Chr3:56179612-56179631 MsG0380014534.01.T01:intron 30.0%
! AGGAAATCAATGTGTTGATA+AGG + Chr3:56182700-56182719 None:intergenic 30.0%
! ATTCCAATCTAAAACTCTTG+AGG + Chr3:56182287-56182306 None:intergenic 30.0%
! GAGACTTTGTTGATTGAAAA+TGG - Chr3:56182839-56182858 MsG0380014534.01.T01:intron 30.0%
! GGATTCATGTTGATAAATTG+AGG + Chr3:56178785-56178804 MsG0380014535.01.T01:CDS 30.0%
! TAATGAGTTGGACTGTAATA+TGG - Chr3:56179370-56179389 MsG0380014534.01.T01:intron 30.0%
! TCTGAAGTATTAACTATTGG+TGG - Chr3:56182743-56182762 MsG0380014534.01.T01:intron 30.0%
! TCTTTTTCTTTTCACAGTCA+TGG - Chr3:56178546-56178565 MsG0380014534.01.T01:three_prime_UTR 30.0%
! TTCAAAAAGGCCTTTGTTAT+TGG + Chr3:56182593-56182612 None:intergenic 30.0%
! TTGGGTGAAAACAATTTGTT+TGG - Chr3:56179523-56179542 MsG0380014534.01.T01:intron 30.0%
!! ACAACATTCTGAAGTTGTAT+CGG - Chr3:56180152-56180171 MsG0380014534.01.T01:intron 30.0%
!! ATGGATTCTGAAATGAAATC+TGG - Chr3:56182858-56182877 MsG0380014534.01.T01:intron 30.0%
!! ATTGATTTTGCTATCCTGAA+AGG - Chr3:56178852-56178871 MsG0380014534.01.T01:intron 30.0%
!! TAAGCATTTTTGTTTCCCTT+CGG + Chr3:56178680-56178699 MsG0380014535.01.T01:five_prime_UTR 30.0%
!! TACTTGTAATTTGCTGTTTC+AGG - Chr3:56180084-56180103 MsG0380014534.01.T01:intron 30.0%
!! TGTTCAAGAAAAGTTGATGA+AGG + Chr3:56183549-56183568 None:intergenic 30.0%
!! TTGATTTTGCTATCCTGAAA+GGG - Chr3:56178853-56178872 MsG0380014534.01.T01:intron 30.0%
!!! ATGGTTTTGTCATGACTTTT+TGG - Chr3:56181600-56181619 MsG0380014534.01.T01:CDS 30.0%
!!! CCTACCATCTTTTTTACTAT+AGG + Chr3:56179200-56179219 MsG0380014535.01.T01:CDS 30.0%
!!! TACCCATAATCTTTTTTTGG+TGG - Chr3:56179638-56179657 MsG0380014534.01.T01:intron 30.0%
!!! TTTCCTCAAGAGTTTTAGAT+TGG - Chr3:56182281-56182300 MsG0380014534.01.T01:intron 30.0%
AAAGTGGATACAAGAGCAAT+TGG - Chr3:56183617-56183636 MsG0380014534.01.T01:intron 35.0%
AACCTAAATGGAAAAGAGAG+TGG + Chr3:56183131-56183150 None:intergenic 35.0%
AAGAAGATCTAGAGGATTCT+TGG + Chr3:56180873-56180892 None:intergenic 35.0%
AAGAATTGTGTACCAGAGAT+AGG - Chr3:56183077-56183096 MsG0380014534.01.T01:intron 35.0%
AATCAATCCATTGTTCAACG+TGG + Chr3:56180111-56180130 None:intergenic 35.0%
AATCTCGACTTTAACTACCT+TGG - Chr3:56179980-56179999 MsG0380014534.01.T01:intron 35.0%
ACAAAACCATAGCCTTTCAA+TGG + Chr3:56181590-56181609 None:intergenic 35.0%
ACAGCATCCAACTTGTATTT+AGG - Chr3:56180578-56180597 MsG0380014534.01.T01:intron 35.0%
ACTCACTTCACAAAAACCTT+TGG + Chr3:56183863-56183882 None:intergenic 35.0%
AGAAGATCTAGAGGATTCTT+GGG + Chr3:56180872-56180891 None:intergenic 35.0%
AGAATGCTGATAAACACCAA+AGG - Chr3:56183844-56183863 MsG0380014534.01.T01:intron 35.0%
AGCGAAACCTAAATACAAGT+TGG + Chr3:56180588-56180607 None:intergenic 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - Chr3:56179271-56179290 MsG0380014534.01.T01:intron 35.0%
ATATCTTTCGGAAATTTGGC+TGG + Chr3:56180679-56180698 None:intergenic 35.0%
ATCAATCCATTGTTCAACGT+GGG + Chr3:56180110-56180129 None:intergenic 35.0%
ATGCTGTTATAATGTCAGCA+AGG + Chr3:56180565-56180584 None:intergenic 35.0%
CAAAACCATAGCCTTTCAAT+GGG + Chr3:56181589-56181608 None:intergenic 35.0%
CAACATGAATCCTATTGGAA+AGG - Chr3:56178793-56178812 MsG0380014534.01.T01:intron 35.0%
CAAGTCAATGATCATGATGA+AGG + Chr3:56183771-56183790 None:intergenic 35.0%
CATGCATGATATTGTTTACG+AGG - Chr3:56178829-56178848 MsG0380014534.01.T01:intron 35.0%
CCGAATATCTTTCGGAAATT+TGG + Chr3:56180683-56180702 None:intergenic 35.0%
CGGGAAAAATTCAGTAAAAG+GGG + Chr3:56180421-56180440 None:intergenic 35.0%
CTATGCAAAAATTGGAAGTC+AGG + Chr3:56182884-56182903 None:intergenic 35.0%
GAAACACCAATCTGAAAATC+TGG + Chr3:56178752-56178771 MsG0380014535.01.T01:CDS 35.0%
GACTATGATAATCACAGTGA+AGG + Chr3:56183185-56183204 None:intergenic 35.0%
GATGATAGTTAGATCACTAG+AGG - Chr3:56179293-56179312 MsG0380014534.01.T01:intron 35.0%
GGAATTTCTCCTGTTAATCA+TGG - Chr3:56179669-56179688 MsG0380014534.01.T01:intron 35.0%
GTATTGTGATTATGCTTCTG+TGG - Chr3:56180975-56180994 MsG0380014534.01.T01:CDS 35.0%
GTTTCTTCAAAGAATGGATC+TGG - Chr3:56181290-56181309 MsG0380014534.01.T01:CDS 35.0%
TAAAGATGCACCAAAGAAAG+TGG - Chr3:56180784-56180803 MsG0380014534.01.T01:intron 35.0%
TCAGATAGTGAAAGAAGCAA+TGG + Chr3:56183311-56183330 None:intergenic 35.0%
TCATGTTGTTATGTGAGCTA+TGG - Chr3:56179875-56179894 MsG0380014534.01.T01:intron 35.0%
TCATTGAACTTGGGAGAATT+GGG + Chr3:56182336-56182355 None:intergenic 35.0%
TCTCCTTACTACAAAATCCA+CGG + Chr3:56179261-56179280 MsG0380014535.01.T01:CDS 35.0%
TCTTCAGCATCTACAACTTT+GGG + Chr3:56180830-56180849 None:intergenic 35.0%
TGAAAATGCCGAGAATCATA+AGG + Chr3:56183474-56183493 None:intergenic 35.0%
TGAATCCATCCATGATTAAC+AGG + Chr3:56179681-56179700 MsG0380014535.01.T01:CDS 35.0%
TGATTATGACGATTATGAGG+TGG + Chr3:56182982-56183001 None:intergenic 35.0%
TGCTGTTATAATGTCAGCAA+GGG + Chr3:56180564-56180583 None:intergenic 35.0%
TTATGATTCGTTACAGGTTC+CGG - Chr3:56178916-56178935 MsG0380014534.01.T01:intron 35.0%
TTCATACATGCTTACGACAT+AGG + Chr3:56181839-56181858 None:intergenic 35.0%
TTGCTTCTTTCACTATCTGA+TGG - Chr3:56183311-56183330 MsG0380014534.01.T01:intron 35.0%
TTGTGAAAGCAGAAATCTCT+TGG + Chr3:56183411-56183430 None:intergenic 35.0%
TTGTGTCTAAATGTAGGTAG+AGG - Chr3:56180451-56180470 MsG0380014534.01.T01:intron 35.0%
TTTACTCTCATACTCTCCTT+TGG + Chr3:56183108-56183127 None:intergenic 35.0%
TTTAGTTGTGCATCAATCTG+TGG + Chr3:56183819-56183838 None:intergenic 35.0%
TTTCTCCTGTTAATCATGGA+TGG - Chr3:56179673-56179692 MsG0380014534.01.T01:intron 35.0%
TTTCTGCTTTCACAATCCAA+TGG - Chr3:56183416-56183435 MsG0380014534.01.T01:intron 35.0%
! AACCACTCTCTTTTCCATTT+AGG - Chr3:56183126-56183145 MsG0380014534.01.T01:intron 35.0%
! AACTTACTGGAGGAAAGTAT+GGG + Chr3:56180195-56180214 None:intergenic 35.0%
! ATCTACAACTTTGGGCTTTT+CGG + Chr3:56180822-56180841 None:intergenic 35.0%
! GAAGATTTTGAGCCATTTGA+GGG - Chr3:56181507-56181526 MsG0380014534.01.T01:intron 35.0%
! TCTGATTTAGCCACTTTCTT+TGG + Chr3:56180797-56180816 None:intergenic 35.0%
! TGAAGATTTTGAGCCATTTG+AGG - Chr3:56181506-56181525 MsG0380014534.01.T01:intron 35.0%
! TTGTGGTAGCTTGATTTTGA+TGG - Chr3:56181780-56181799 MsG0380014534.01.T01:CDS 35.0%
! TTTGGTGCATCTTTAGTTGT+GGG + Chr3:56180779-56180798 None:intergenic 35.0%
!! TCGGCTCTAAGTGATTAATT+GGG + Chr3:56182232-56182251 None:intergenic 35.0%
!! TCGTTTTCACTTAAAGCACT+TGG + Chr3:56181550-56181569 None:intergenic 35.0%
!!! CTTTTTTTGGTGGAATTGTG+TGG - Chr3:56179648-56179667 MsG0380014534.01.T01:intron 35.0%
AAACCTTATCCCACTAAGTG+GGG + Chr3:56179439-56179458 MsG0380014535.01.T01:intron 40.0%
ACATACTAAATGCGGTGATG+AGG + Chr3:56182069-56182088 None:intergenic 40.0%
ACTAAAAATGGAGCCAACCA+AGG + Chr3:56180000-56180019 None:intergenic 40.0%
AGTTAGATCACTAGAGGTAG+AGG - Chr3:56179299-56179318 MsG0380014534.01.T01:intron 40.0%
ATAGCCTTTCAATGGGAACT+GGG + Chr3:56181582-56181601 None:intergenic 40.0%
ATATGTAGAAAGAAGACCCG+TGG - Chr3:56179241-56179260 MsG0380014534.01.T01:intron 40.0%
ATCTAGAGGATTCTTGGGTT+TGG + Chr3:56180867-56180886 None:intergenic 40.0%
CAAACCTTATCCCACTAAGT+GGG + Chr3:56179440-56179459 MsG0380014535.01.T01:intron 40.0%
CAAAGTTGTAGATGCTGAAG+AGG - Chr3:56180829-56180848 MsG0380014534.01.T01:intron 40.0%
CAACTTACTGGAGGAAAGTA+TGG + Chr3:56180196-56180215 None:intergenic 40.0%
CAGTAAAAGGGGAAGTTAAC+AGG + Chr3:56180410-56180429 None:intergenic 40.0%
CATACTAAATGCGGTGATGA+GGG + Chr3:56182068-56182087 None:intergenic 40.0%
CATCATATGCAACTTACTGG+AGG + Chr3:56180205-56180224 None:intergenic 40.0%
CATGGATGAATGCTATGACA+TGG - Chr3:56181416-56181435 MsG0380014534.01.T01:intron 40.0%
CTCATGTTGAGAGATACTTC+TGG - Chr3:56180642-56180661 MsG0380014534.01.T01:intron 40.0%
CTCCTTACTACAAAATCCAC+GGG + Chr3:56179260-56179279 MsG0380014535.01.T01:CDS 40.0%
CTCTTCAGCATCTACAACTT+TGG + Chr3:56180831-56180850 None:intergenic 40.0%
GGAAATAGGCTTAGATGGTT+TGG - Chr3:56179218-56179237 MsG0380014534.01.T01:intron 40.0%
GGTAACAAGACCAGTATTAC+AGG - Chr3:56181801-56181820 MsG0380014534.01.T01:CDS 40.0%
GTCATTGAACTTGGGAGAAT+TGG + Chr3:56182337-56182356 None:intergenic 40.0%
GTTGTAGGGAATTGAGTGTT+GGG - Chr3:56179050-56179069 MsG0380014534.01.T01:intron 40.0%
TAACCTGGCCGAATATCTTT+CGG + Chr3:56180691-56180710 None:intergenic 40.0%
TAACTGAGCATAAGGACAGA+AGG + Chr3:56183925-56183944 None:intergenic 40.0%
TATGGGGAAAATCCATGTCT+TGG + Chr3:56180178-56180197 None:intergenic 40.0%
TCAATTCCCTACAACATCGT+CGG + Chr3:56179045-56179064 MsG0380014535.01.T01:CDS 40.0%
TCATCCAAAACCATCTTGCT+TGG + Chr3:56180899-56180918 None:intergenic 40.0%
TCGACTTTAACTACCTTGGT+TGG - Chr3:56179984-56180003 MsG0380014534.01.T01:intron 40.0%
TCTAGAGGATTCTTGGGTTT+GGG + Chr3:56180866-56180885 None:intergenic 40.0%
TGGTAGGAAATAGGCTTAGA+TGG - Chr3:56179213-56179232 MsG0380014534.01.T01:intron 40.0%
TGTCTAAATGTAGGTAGAGG+AGG - Chr3:56180454-56180473 MsG0380014534.01.T01:intron 40.0%
TGTTGTAGGGAATTGAGTGT+TGG - Chr3:56179049-56179068 MsG0380014534.01.T01:intron 40.0%
TTATGACGATTATGAGGTGG+AGG + Chr3:56182979-56182998 None:intergenic 40.0%
TTCTTTCGTGACACTGAACA+AGG - Chr3:56181260-56181279 MsG0380014534.01.T01:CDS 40.0%
! ACTTACTGGAGGAAAGTATG+GGG + Chr3:56180194-56180213 None:intergenic 40.0%
! AGCTTGCTCCTTATGATTCT+CGG - Chr3:56183463-56183482 MsG0380014534.01.T01:intron 40.0%
! CTTTGGTGCATCTTTAGTTG+TGG + Chr3:56180780-56180799 None:intergenic 40.0%
! TAGCTTCAGTTTGCTTAACC+TGG + Chr3:56180706-56180725 None:intergenic 40.0%
! TCTACAACTTTGGGCTTTTC+GGG + Chr3:56180821-56180840 None:intergenic 40.0%
! TCTGACACTGATGATGAAGA+CGG + Chr3:56183215-56183234 None:intergenic 40.0%
! TGTTTTCATGATTATGGCCG+CGG - Chr3:56179722-56179741 MsG0380014534.01.T01:intron 40.0%
! TTAACTATTGGTGGATCACC+TGG - Chr3:56182752-56182771 MsG0380014534.01.T01:intron 40.0%
! TTGGCTCCAGATTTTCAGAT+TGG - Chr3:56178743-56178762 MsG0380014534.01.T01:intron 40.0%
! TTTAGGTTTCGCTCAACTCT+TGG - Chr3:56180595-56180614 MsG0380014534.01.T01:intron 40.0%
!! AAGTTGGTACTCACTTCACA+GGG + Chr3:56183954-56183973 None:intergenic 40.0%
!! AATTTCTCCGTTTGACTTGC+AGG - Chr3:56181162-56181181 MsG0380014534.01.T01:CDS 40.0%
!! ACTTTGGAATCTCTTGTCCA+CGG + Chr3:56181392-56181411 None:intergenic 40.0%
!! CAGAAGTATCTCTCAACATG+AGG + Chr3:56180644-56180663 None:intergenic 40.0%
!! CTCGGCTCTAAGTGATTAAT+TGG + Chr3:56182233-56182252 None:intergenic 40.0%
!! GTCATTGAAGAGAGCATTTG+AGG - Chr3:56180487-56180506 MsG0380014534.01.T01:intron 40.0%
!! TAAGTTGGTACTCACTTCAC+AGG + Chr3:56183955-56183974 None:intergenic 40.0%
!! TGGTGGGTTTCTTCAAAGAA+TGG - Chr3:56181284-56181303 MsG0380014534.01.T01:CDS 40.0%
AAAAGAGCCTCTCCCTCAAA+TGG + Chr3:56181522-56181541 None:intergenic 45.0%
AACAACTGAAGTTGTCACCG+CGG + Chr3:56179742-56179761 MsG0380014535.01.T01:exon 45.0%
AACCAGAGAGAATATCCCTC+TGG + Chr3:56181207-56181226 None:intergenic 45.0%
AACCCCTTCACCTTAAATGG+AGG + Chr3:56181360-56181379 None:intergenic 45.0%
AAGCAGAAATCTCTTGGTCG+TGG + Chr3:56183405-56183424 None:intergenic 45.0%
AAGTTAGACAGGTTCCTGCT+TGG - Chr3:56182915-56182934 MsG0380014534.01.T01:intron 45.0%
ACTTGGGAGAATTGGGATGA+TGG + Chr3:56182329-56182348 None:intergenic 45.0%
AGAAGCAATGGCTCAATCGT+CGG + Chr3:56183299-56183318 None:intergenic 45.0%
AGTAAGACCGACGATGTTGT+AGG - Chr3:56179035-56179054 MsG0380014534.01.T01:intron 45.0%
AGTTCCCAGTTCCCATTGAA+AGG - Chr3:56181575-56181594 MsG0380014534.01.T01:CDS 45.0%
ATCCAGAGGGATATTCTCTC+TGG - Chr3:56181202-56181221 MsG0380014534.01.T01:CDS 45.0%
ATCGCATTGCTCTCAAAGAC+AGG + Chr3:56178962-56178981 MsG0380014535.01.T01:CDS 45.0%
ATGACATGGAGCTGTATGAG+TGG - Chr3:56181430-56181449 MsG0380014534.01.T01:intron 45.0%
ATGTAGTTGACCCCACTTAG+TGG - Chr3:56179426-56179445 MsG0380014534.01.T01:intron 45.0%
CACAACCCCTTCACCTTAAA+TGG + Chr3:56181363-56181382 None:intergenic 45.0%
CAGTTCCCATTGAAAGGCTA+TGG - Chr3:56181581-56181600 MsG0380014534.01.T01:CDS 45.0%
CATAGCCTTTCAATGGGAAC+TGG + Chr3:56181583-56181602 None:intergenic 45.0%
CCAAACCTTATCCCACTAAG+TGG + Chr3:56179441-56179460 MsG0380014535.01.T01:intron 45.0%
CCACTTAGTGGGATAAGGTT+TGG - Chr3:56179438-56179457 MsG0380014534.01.T01:intron 45.0%
CCAGAATCCTGCAAGTCAAA+CGG + Chr3:56181172-56181191 None:intergenic 45.0%
CCAGAGATAGGATAGACCAA+AGG - Chr3:56183089-56183108 MsG0380014534.01.T01:intron 45.0%
CCTTTGGTCTATCCTATCTC+TGG + Chr3:56183092-56183111 None:intergenic 45.0%
CTCAACATGAGGAAACTCTG+AGG + Chr3:56180633-56180652 None:intergenic 45.0%
CTCACAATACCTACCTGGTT+GGG - Chr3:56180528-56180547 MsG0380014534.01.T01:intron 45.0%
CTTGGAGGAAGAAGATCTAG+AGG + Chr3:56180881-56180900 None:intergenic 45.0%
GTAAGACCGACGATGTTGTA+GGG - Chr3:56179036-56179055 MsG0380014534.01.T01:intron 45.0%
GTCTTAGCAGATGGAATAGG+TGG + Chr3:56180731-56180750 None:intergenic 45.0%
TAATAAGCGTGGCAGAGAAG+AGG - Chr3:56179097-56179116 MsG0380014534.01.T01:intron 45.0%
TACCTTTGATTGCGACCTCA+CGG + Chr3:56180958-56180977 None:intergenic 45.0%
TCATCTTGCTGCATATGCTC+AGG - Chr3:56183356-56183375 MsG0380014534.01.T01:intron 45.0%
TCCAAAACCATCTTGCTTGG+AGG + Chr3:56180896-56180915 None:intergenic 45.0%
TCTATATGGTCCTACGTGCT+CGG + Chr3:56182251-56182270 None:intergenic 45.0%
TCTTCTTCCTCCAAGCAAGA+TGG - Chr3:56180886-56180905 MsG0380014534.01.T01:intron 45.0%
TGAGAGATACTTCTGGACCT+TGG - Chr3:56180649-56180668 MsG0380014534.01.T01:intron 45.0%
TGCATCTTTAGTTGTGGGCT+TGG + Chr3:56180774-56180793 None:intergenic 45.0%
TGGATCAGAGCCTCCATTTA+AGG - Chr3:56181347-56181366 MsG0380014534.01.T01:intron 45.0%
TGGATCATCTCCCATTGATC+AGG - Chr3:56179543-56179562 MsG0380014534.01.T01:intron 45.0%
TGGGACATGTATGATCCAGA+GGG - Chr3:56181189-56181208 MsG0380014534.01.T01:CDS 45.0%
TGTAGTTGACCCCACTTAGT+GGG - Chr3:56179427-56179446 MsG0380014534.01.T01:intron 45.0%
TTCGTGACACTGAACAAGGT+TGG - Chr3:56181264-56181283 MsG0380014534.01.T01:CDS 45.0%
TTGGGCGGTTAAGAACCAAT+AGG - Chr3:56179068-56179087 MsG0380014534.01.T01:intron 45.0%
TTTCCGAAAGATATTCGGCC+AGG - Chr3:56180685-56180704 MsG0380014534.01.T01:intron 45.0%
TTTGACACCGCTGTATTCAG+CGG + Chr3:56178717-56178736 MsG0380014535.01.T01:exon 45.0%
TTTGCTGCAGTTGCACGATT+GGG - Chr3:56179505-56179524 MsG0380014534.01.T01:intron 45.0%
! AAGTTGTATCGGCCAAGACA+TGG - Chr3:56180163-56180182 MsG0380014534.01.T01:intron 45.0%
! AGAGCCTCCATTTAAGGTGA+AGG - Chr3:56181353-56181372 MsG0380014534.01.T01:intron 45.0%
! AGCCTCCATTTAAGGTGAAG+GGG - Chr3:56181355-56181374 MsG0380014534.01.T01:intron 45.0%
! ATTTGAGGGAGAGGCTCTTT+TGG - Chr3:56181521-56181540 MsG0380014534.01.T01:intron 45.0%
! CAGCGGTGTCAAAGTTGAAT+TGG - Chr3:56178724-56178743 MsG0380014534.01.T01:intron 45.0%
! CATTTAAGGTGAAGGGGTTG+TGG - Chr3:56181361-56181380 MsG0380014534.01.T01:intron 45.0%
! GAAATTTGGCTGGTTCACCA+AGG + Chr3:56180669-56180688 None:intergenic 45.0%
! GAATTGGGATGATGGTTCTG+AGG + Chr3:56182321-56182340 None:intergenic 45.0%
! GACCCGTGGATTTTGTAGTA+AGG - Chr3:56179255-56179274 MsG0380014534.01.T01:intron 45.0%
! GAGCCTCCATTTAAGGTGAA+GGG - Chr3:56181354-56181373 MsG0380014534.01.T01:intron 45.0%
! GTAGGTATTGTGAGCAAGGT+GGG + Chr3:56180522-56180541 None:intergenic 45.0%
! TCCTCCAAGCAAGATGGTTT+TGG - Chr3:56180892-56180911 MsG0380014534.01.T01:intron 45.0%
! TCTTTTCACAGTCATGGCTC+TGG - Chr3:56178552-56178571 MsG0380014534.01.T01:three_prime_UTR 45.0%
! TGACACTGAACAAGGTTGGT+GGG - Chr3:56181268-56181287 MsG0380014534.01.T01:CDS 45.0%
! TGTCTTTGAGAGCAATGCGA+TGG - Chr3:56178961-56178980 MsG0380014534.01.T01:intron 45.0%
! TTTTGAGCCATTTGAGGGAG+AGG - Chr3:56181512-56181531 MsG0380014534.01.T01:intron 45.0%
!! CGTTTGACTTGCAGGATTCT+GGG - Chr3:56181170-56181189 MsG0380014534.01.T01:CDS 45.0%
!!! GCAAGATGGTTTTGGATGAC+TGG - Chr3:56180900-56180919 MsG0380014534.01.T01:three_prime_UTR 45.0%
!! AAAAAAAAAAAATATATGTT+TGG + Chr3:56184005-56184024 None:intergenic 5.0%
!!! AAAATAAAAAAAATACATTT+TGG + Chr3:56181934-56181953 None:intergenic 5.0%
!!! ATATATTTTTTTTTTTTTGA+AGG - Chr3:56184008-56184027 MsG0380014534.01.T01:five_prime_UTR 5.0%
!!! TTAAATTTTTATTTTTTCTT+TGG + Chr3:56181883-56181902 None:intergenic 5.0%
AACAGAATGCCCAACCAGGT+AGG + Chr3:56180540-56180559 None:intergenic 50.0%
ACGCTCTTTCTGAGCTTCGT+CGG + Chr3:56181472-56181491 None:intergenic 50.0%
AGGATTCTTGGGTTTGGGCT+TGG + Chr3:56180861-56180880 None:intergenic 50.0%
AGTTGTGGGCTTGGATTCCT+TGG + Chr3:56180765-56180784 None:intergenic 50.0%
CAATCGTGCAACTGCAGCAA+AGG + Chr3:56179506-56179525 MsG0380014535.01.T01:intron 50.0%
CCATCAGGAGTTTCCAAGAC+CGG + Chr3:56178938-56178957 MsG0380014535.01.T01:CDS 50.0%
CCTTGCTCACAATACCTACC+TGG - Chr3:56180523-56180542 MsG0380014534.01.T01:intron 50.0%
CTCTCAAAGACAGGACCATC+AGG + Chr3:56178953-56178972 MsG0380014535.01.T01:CDS 50.0%
CTGATTGCCGCTGAATACAG+CGG - Chr3:56178707-56178726 MsG0380014534.01.T01:three_prime_UTR 50.0%
CTGGGACATGTATGATCCAG+AGG - Chr3:56181188-56181207 MsG0380014534.01.T01:CDS 50.0%
CTTTGCTGCAGTTGCACGAT+TGG - Chr3:56179504-56179523 MsG0380014534.01.T01:intron 50.0%
GCTCACAATACCTACCTGGT+TGG - Chr3:56180527-56180546 MsG0380014534.01.T01:intron 50.0%
GGATTCTTGGGTTTGGGCTT+GGG + Chr3:56180860-56180879 None:intergenic 50.0%
GGGGTCTTAGCAGATGGAAT+AGG + Chr3:56180734-56180753 None:intergenic 50.0%
GTGACACTGAACAAGGTTGG+TGG - Chr3:56181267-56181286 MsG0380014534.01.T01:CDS 50.0%
GTTGTGGGCTTGGATTCCTT+GGG + Chr3:56180764-56180783 None:intergenic 50.0%
TAGACAGGTTCCTGCTTGGA+AGG - Chr3:56182919-56182938 MsG0380014534.01.T01:intron 50.0%
TCGAAATCCACCTTCCAAGC+AGG + Chr3:56182932-56182951 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG - Chr3:56179433-56179452 MsG0380014534.01.T01:intron 50.0%
TTCAGGCCCACGTTGAACAA+TGG - Chr3:56180101-56180120 MsG0380014534.01.T01:intron 50.0%
TTCCGTGAGGTCGCAATCAA+AGG - Chr3:56180953-56180972 MsG0380014534.01.T01:CDS 50.0%
TTCGTCGGAGATGTCAACCT+TGG + Chr3:56181457-56181476 None:intergenic 50.0%
TTCGTTACAGGTTCCGGTCT+TGG - Chr3:56178922-56178941 MsG0380014534.01.T01:intron 50.0%
! CCAGGTAGGTATTGTGAGCA+AGG + Chr3:56180526-56180545 None:intergenic 50.0%
! GGTAGGTATTGTGAGCAAGG+TGG + Chr3:56180523-56180542 None:intergenic 50.0%
!! CCGTTTGACTTGCAGGATTC+TGG - Chr3:56181169-56181188 MsG0380014534.01.T01:CDS 50.0%
!! CTGGCTCGCAAGTATGCTTT+TGG - Chr3:56181309-56181328 MsG0380014534.01.T01:CDS 50.0%
!! GTAGGGAATTGAGTGTTGGG+CGG - Chr3:56179053-56179072 MsG0380014534.01.T01:intron 50.0%
ACAGGTTCCTGCTTGGAAGG+TGG - Chr3:56182922-56182941 MsG0380014534.01.T01:intron 55.0%
AGCAATGCGATGGCTCGCTA+TGG - Chr3:56178971-56178990 MsG0380014534.01.T01:intron 55.0%
CACCAAGACCAACTTCCGTG+AGG - Chr3:56180940-56180959 MsG0380014534.01.T01:exon 55.0%
CCGGTCTTGGAAACTCCTGA+TGG - Chr3:56178935-56178954 MsG0380014534.01.T01:intron 55.0%
CGATTATGAGGTGGAGGACG+AGG + Chr3:56182973-56182992 None:intergenic 55.0%
GATTGCGACCTCACGGAAGT+TGG + Chr3:56180951-56180970 None:intergenic 55.0%
GCGGTGATGAGGGATATTGC+AGG + Chr3:56182058-56182077 None:intergenic 55.0%
GGAGCTGTATGAGTGGACCA+AGG - Chr3:56181437-56181456 MsG0380014534.01.T01:intron 55.0%
GGGTAACAGAATGCCCAACC+AGG + Chr3:56180544-56180563 None:intergenic 55.0%
TAGATCCTGCACGCTCCGAA+GGG - Chr3:56178662-56178681 MsG0380014534.01.T01:three_prime_UTR 55.0%
TCACTTAGAGCCGAGCACGT+AGG - Chr3:56182238-56182257 MsG0380014534.01.T01:intron 55.0%
TGGGTAGGGGTCTTAGCAGA+TGG + Chr3:56180740-56180759 None:intergenic 55.0%
! AAGGGGTTGTGGCTTTTCCG+TGG - Chr3:56181372-56181391 MsG0380014534.01.T01:intron 55.0%
! GACCTCACGGAAGTTGGTCT+TGG + Chr3:56180945-56180964 None:intergenic 55.0%
! TGGATTCCTTGGGCTGGGTA+GGG + Chr3:56180754-56180773 None:intergenic 55.0%
! TTGGATTCCTTGGGCTGGGT+AGG + Chr3:56180755-56180774 None:intergenic 55.0%
GCGGCAGTGCTAACCCTTTC+AGG + Chr3:56178869-56178888 MsG0380014535.01.T01:CDS 60.0%
GGGCTTGGATTCCTTGGGCT+GGG + Chr3:56180759-56180778 None:intergenic 60.0%
GTAGATCCTGCACGCTCCGA+AGG - Chr3:56178661-56178680 MsG0380014534.01.T01:three_prime_UTR 60.0%
TAAGACCCCTACCCAGCCCA+AGG - Chr3:56180745-56180764 MsG0380014534.01.T01:intron 60.0%
TGGGCTTGGATTCCTTGGGC+TGG + Chr3:56180760-56180779 None:intergenic 60.0%
TGTTTCCCTTCGGAGCGTGC+AGG + Chr3:56178670-56178689 MsG0380014535.01.T01:five_prime_UTR 60.0%
! GGATTCCTTGGGCTGGGTAG+GGG + Chr3:56180753-56180772 None:intergenic 60.0%
TGAGGTGGAGGACGAGGACG+AGG + Chr3:56182967-56182986 None:intergenic 65.0%
GGTGGAGGACGAGGACGAGG+AGG + Chr3:56182964-56182983 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 56178483 56184033 56178483 ID=MsG0380014534.01;Name=MsG0380014534.01
Chr3 mRNA 56178483 56184033 56178483 ID=MsG0380014534.01.T01;Parent=MsG0380014534.01;Name=MsG0380014534.01.T01;_AED=0.48;_eAED=0.48;_QI=82|1|1|1|0.85|0.75|8|314|419
Chr3 exon 56178483 56178738 56178483 ID=MsG0380014534.01.T01:exon:18429;Parent=MsG0380014534.01.T01
Chr3 exon 56180895 56181332 56180895 ID=MsG0380014534.01.T01:exon:18428;Parent=MsG0380014534.01.T01
Chr3 exon 56181542 56182049 56181542 ID=MsG0380014534.01.T01:exon:18427;Parent=MsG0380014534.01.T01
Chr3 exon 56182309 56182410 56182309 ID=MsG0380014534.01.T01:exon:18426;Parent=MsG0380014534.01.T01
Chr3 exon 56182952 56183001 56182952 ID=MsG0380014534.01.T01:exon:18425;Parent=MsG0380014534.01.T01
Chr3 exon 56183524 56183584 56183524 ID=MsG0380014534.01.T01:exon:18424;Parent=MsG0380014534.01.T01
Chr3 exon 56183702 56183851 56183702 ID=MsG0380014534.01.T01:exon:18423;Parent=MsG0380014534.01.T01
Chr3 exon 56183943 56184033 56183943 ID=MsG0380014534.01.T01:exon:18422;Parent=MsG0380014534.01.T01
Chr3 five_prime_UTR 56183952 56184033 56183952 ID=MsG0380014534.01.T01:five_prime_utr;Parent=MsG0380014534.01.T01
Chr3 CDS 56183943 56183951 56183943 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56183702 56183851 56183702 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56183524 56183584 56183524 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56182952 56183001 56182952 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56182309 56182410 56182309 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56181542 56182049 56181542 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 CDS 56180953 56181332 56180953 ID=MsG0380014534.01.T01:cds;Parent=MsG0380014534.01.T01
Chr3 three_prime_UTR 56180895 56180952 56180895 ID=MsG0380014534.01.T01:three_prime_utr;Parent=MsG0380014534.01.T01
Chr3 three_prime_UTR 56178483 56178738 56178483 ID=MsG0380014534.01.T01:three_prime_utr;Parent=MsG0380014534.01.T01
Gene Sequence

>MsG0380014534.01.T01

ATGGCTCTGATCCTGCACGCTCCGAAGGGAAACAAAAATGCTTACAAGACTCTGATTGCCGCTGAATACAGCGGTGTCAAAGTTGAATTGGCTCCAGATTTTCAGATTGGTGTTTCTAATAAAACTCCTCAATTTATCAACATGAATCCTATTGGAAAGGTTCCGGTCTTGGAAACTCCTGATGGTCCTGTCTTTGAGAGCAATGCGATGGCTCGCTATGTTGCACGATTGGGTGAAAACAATTTGTTTGGATCATCTCCCATTGATCAGGCCCACGTTGAACAATGGATTGATTTTTCTTCTACGGAGATTGATGACAACATTCTGAAGTTGTATCGGCCAAGACATGGATTTTCCCCATACTTTCCTCCAGTAGAGGAGGCTGCAATTTCGTCATTGAAGAGAGCATTTGAGGCTTTGAACACCCACCTTGCTCACAATACCTACCTGGTTGGGCATTCTGTTACCCTTGCTGACATTATAACAGCATCCAACTTGTATTTAGGTTTCGCTCAACTCTTGGTCAAGAGCTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGGTGAACCAGCCAAATTTCCGAAAGATATTCGGCCAGGTTAAGCAAACTGAAGCTATGCCACCTATTCCATCTGCTAAGACCCCTACCCAGCCCAAGGAATCCAAGCCCACAACTAAAGATGCACCAAAGAAAGTGGCTAAATCAGAGCCCGAAAAGCCCAAAGTTGTAGATGCTGAAGAGGAAGCACCCAAGCCCAAACCCAAGAATCCTCTAGATCTTCTTCCTCCAAGCAAGATGGTTTTGGATGACTGGAAAAGACTCTACTCTAACACCAAGACCAACTTCCGTGAGGTCGCAATCAAAGGATTCTGGGACATGTATGATCCAGAGGGATATTCTCTCTGGTTCTGTGATTACAAATACAACGACGAGAACACTGTTTCTTTCGTGACACTGAACAAGGTTGGTGGGTTTCTTCAAAGAATGGATCTGGCTCGCAAGTATGCTTTTGGAAAGATGCTTATAATTGGATCAGAGCCTCCATTTAAGGTGAAGGGGTTGTGGCTTTTCCGTGGACAAGAGATTCCAAAGTTTATCATGGATGAATGCTATGACATGGAGCTGTATGAGTGGACCAAGGTTGACATCTCCGACGAAGCTCAGAAAGAGCGTGCCAGTCAGATGATTGAAGATTTTGAGCCATTTGAGGGAGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA
Protein sequence

>MsG0380014534.01.T01

MALILHAPKGNKNAYKTLIAAEYSGVKVELAPDFQIGVSNKTPQFINMNPIGKVPVLETPDGPVFESNAMARYVARLGENNLFGSSPIDQAHVEQWIDFSSTEIDDNILKLYRPRHGFSPYFPPVEEAAISSLKRAFEALNTHLAHNTYLVGHSVTLADIITASNLYLGFAQLLVKSFTSEFPHVERYFWTLVNQPNFRKIFGQVKQTEAMPPIPSAKTPTQPKESKPTTKDAPKKVAKSEPEKPKVVDAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLIIGSEPPFKVKGLWLFRGQEIPKFIMDECYDMELYEWTKVDISDEAQKERASQMIEDFEPFEGEALLDAKCFK*