AlfalfaGEDB | MsG0380014572.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014572.01

KEGG: -
GO: GO:0003676
PFAM: PF13456

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014572.01.T01	XP_024640479.2	58.088	136	56	1	2	136	109	244	9.17E-46	159

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014572.01.T01	A0A396GZG8	57.778	135	56	1	2	135	127	261	2.40e-45	157

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380014572.01	MsG0280009322.01	PPI
MsG0380014572.01	MsG0280010449.01	PPI
MsG0380014572.01	MsG0780041116.01	PPI
MsG0380014572.01	MsG0780041116.01	PPI
MsG0380014572.01	MsG0780040274.01	PPI
MsG0380014572.01	MsG0380013578.01	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014572.01.T01	MTR_7g082560	61.905	126	16	2	6	130	10	104	4.61e-44	140
MsG0380014572.01.T01	MTR_5g091440	44.628	121	35	1	10	130	3	91	2.99e-26	95.9
MsG0380014572.01.T01	MTR_2g027020	42.308	130	70	2	2	130	28	153	3.49e-26	97.4
MsG0380014572.01.T01	MTR_7g063280	41.748	103	59	1	2	103	72	174	3.38e-25	94.7
MsG0380014572.01.T01	MTR_6g016265	54.321	81	36	1	4	83	41	121	6.03e-24	90.1
MsG0380014572.01.T01	MTR_8g036780	51.765	85	31	1	1	85	33	107	2.71e-23	87.8
MsG0380014572.01.T01	MTR_6g034915	37.405	131	66	1	3	133	56	170	1.13e-20	82.8
MsG0380014572.01.T01	MTR_8g088220	53.425	73	33	1	12	83	4	76	2.43e-20	79.3
MsG0380014572.01.T01	MTR_8g059135	48.352	91	46	1	5	94	31	121	3.51e-20	80.5
MsG0380014572.01.T01	MTR_0015s0120	52.000	75	36	0	1	75	292	366	7.55e-20	84.0

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 30 sgRNAs with CRISPR-Local

Find 29 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTTACAGAACGCAATC+TGG	0.447664	3:+56631559	MsG0380014572.01.T01:CDS
AATGTTGTCCGGTACCGTCT+TGG	0.491886	3:-56631542	None:intergenic
ACAAGCTATGGACTGGGTGA+AGG	0.570831	3:+56631483	MsG0380014572.01.T01:CDS
ACTCTGATGTGAAGTTCATT+AGG	0.435545	3:+56631641	MsG0380014572.01.T01:CDS
AGTAAATGTATACACATGTT+AGG	0.450990	3:+56631604	MsG0380014572.01.T01:CDS
ATCTGCATTAGAGACGCGAA+TGG	0.611646	3:+56631385	MsG0380014572.01.T01:CDS
ATGAAATGTTATAATGAATA+CGG	0.448735	3:-56631723	None:intergenic
CAGAACGCAATCTGGTGTAT+CGG	0.561000	3:+56631567	MsG0380014572.01.T01:CDS
CTATCATTGATGTTGATGCC+AGG	0.519883	3:+56631443	MsG0380014572.01.T01:CDS
CTGCATTAGAGACGCGAATG+GGG	0.629771	3:+56631387	MsG0380014572.01.T01:CDS

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATTTACAGAACGCAATC+TGG	+	Chr3:56631559-56631578	MsG0380014572.01.T01:CDS	35.0%
ACTCTGATGTGAAGTTCATT+AGG	+	Chr3:56631641-56631660	MsG0380014572.01.T01:CDS	35.0%
TATCATTGATGTTGATGCCA+GGG	+	Chr3:56631444-56631463	MsG0380014572.01.T01:CDS	35.0%
TGCTCATAGCTTAACTAAGA+TGG	+	Chr3:56631681-56631700	MsG0380014572.01.T01:CDS	35.0%
CTATCATTGATGTTGATGCC+AGG	+	Chr3:56631443-56631462	MsG0380014572.01.T01:CDS	40.0%
CTGGCATCAACATCAATGAT+AGG	-	Chr3:56631445-56631464	None:intergenic	40.0%
GCTATTACAAGCTATGGACT+GGG	+	Chr3:56631477-56631496	MsG0380014572.01.T01:CDS	40.0%
TGCGTTCTGTAAATGTTGTC+CGG	-	Chr3:56631556-56631575	None:intergenic	40.0%
ATCTGCATTAGAGACGCGAA+TGG	+	Chr3:56631385-56631404	MsG0380014572.01.T01:CDS	45.0%
CAGAACGCAATCTGGTGTAT+CGG	+	Chr3:56631567-56631586	MsG0380014572.01.T01:CDS	45.0%

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	56631364	56631777	56631364	ID=MsG0380014572.01;Name=MsG0380014572.01
Chr3	mRNA	56631364	56631777	56631364	ID=MsG0380014572.01.T01;Parent=MsG0380014572.01;Name=MsG0380014572.01.T01;_AED=0.41;_eAED=0.41;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|137
Chr3	exon	56631364	56631777	56631364	ID=MsG0380014572.01.T01:exon:28885;Parent=MsG0380014572.01.T01
Chr3	CDS	56631364	56631777	56631364	ID=MsG0380014572.01.T01:cds;Parent=MsG0380014572.01.T01

Gene Sequence

>MsG0380014572.01.T01

ATGGACAGAGTGGGTATAAGCATCTGCATTAGAGACGCGAATGGGGCTTTTGTGTTAGCTTGGACTGACTGGTTCTCTCCTATCATTGATGTTGATGCCAGGGAAGCTCTCGGGCTATTACAAGCTATGGACTGGGTGAAGGATCTACAGTTGGTGAATATGGATTTCGAGGTGGATTCCAAGACGGTACCGGACAACATTTACAGAACGCAATCTGGTGTATCGGAACTTAGTGTGTTAAGTAAATGTATACACATGTTAGGCACTGATCTCATGAACTCTGATGTGAAGTTCATTAGGAGACAAGCAAACGAAGTTGCTCATAGCTTAACTAAGATGGCTTTGTCGAAAGCTAGTTTCCGTATTCATTATAACATTTCATCATGTATTGTTGCATTAAGCTTGTTTCTTTAA

Protein sequence

>MsG0380014572.01.T01

MDRVGISICIRDANGAFVLAWTDWFSPIIDVDAREALGLLQAMDWVKDLQLVNMDFEVDSKTVPDNIYRTQSGVSELSVLSKCIHMLGTDLMNSDVKFIRRQANEVAHSLTKMALSKASFRIHYNISSCIVALSLFL*