AlfalfaGEDB | MsG0380014600.01

M. sativa cultivar ZhongmuNo.1 / MsG0380014600.01

KEGG: K00876
GO: GO:0005524 GO:0008152 GO:0009116 GO:0016301
PFAM: PF00485 PF10354 PF14681

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014600.01.T01	XP_003600425.1	94.118	476	21	1	15	483	1	476	0	913

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014600.01.T01	O65583	80.514	467	82	3	18	475	3	469	0	767

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014600.01.T01	G7IY62	94.118	476	21	1	15	483	1	476	0.0	913

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280010554.01	MsG0380014600.01	0.802220	6.221253e-49	3.030511e-46
MsG0280011003.01	MsG0380014600.01	0.810088	1.371638e-50	8.192097e-48
MsG0380014600.01	MsG0480021464.01	0.817621	2.999562e-52	2.195335e-49
MsG0380014600.01	MsG0880045145.01	0.800393	1.472259e-48	6.847433e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380014600.01.T01	MTR_3g061030	94.118	476	21	1	15	483	1	476	0.0	913
MsG0380014600.01.T01	MTR_5g096660	82.590	471	72	3	18	478	3	473	0.0	800
MsG0380014600.01.T01	MTR_3g061030	93.659	410	19	1	81	483	1	410	0.0	776
MsG0380014600.01.T01	MTR_7g029450	71.941	474	119	5	15	474	1	474	0.0	685
MsG0380014600.01.T01	MTR_4g103620	71.116	457	110	5	27	474	10	453	0.0	650
MsG0380014600.01.T01	MTR_3g061070	78.125	384	35	1	471	854	133	467	0.0	608
MsG0380014600.01.T01	MTR_6g021580	61.905	105	35	1	61	165	36	135	7.69e-36	137
MsG0380014600.01.T01	MTR_6g082340	47.727	88	46	0	483	570	114	201	1.29e-23	100
MsG0380014600.01.T01	MTR_6g082260	45.098	102	53	1	469	570	104	202	1.33e-23	100
MsG0380014600.01.T01	MTR_6g082310	48.864	88	45	0	483	570	115	202	2.95e-23	99.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380014600.01.T01	AT4G26510	80.514	467	82	3	18	475	3	469	767
MsG0380014600.01.T01	AT4G26510	80.514	467	82	3	18	475	3	469	767
MsG0380014600.01.T01	AT4G26510	80.514	467	82	3	18	475	3	469	767
MsG0380014600.01.T01	AT4G26510	80.514	467	82	3	18	475	3	469	767
MsG0380014600.01.T01	AT1G55810	78.891	469	85	5	17	475	2	466	749
MsG0380014600.01.T01	AT1G55810	78.891	469	85	5	17	475	2	466	749
MsG0380014600.01.T01	AT1G55810	78.891	469	85	5	17	475	2	466	749
MsG0380014600.01.T01	AT1G55810	75.356	491	85	6	17	475	2	488	738
MsG0380014600.01.T01	AT1G55810	75.356	491	85	6	17	475	2	488	738
MsG0380014600.01.T01	AT1G55810	77.825	469	85	6	17	475	2	461	733

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Find 167 sgRNAs with CRISPR-Local

Find 693 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCAGGTTCTGTATACA+CGG	0.605115	3:+57008195	MsG0380014600.01.T01:intron
AACAATGTGACAGAAATACA+TGG	0.624433	3:+57015417	MsG0380014600.01.T01:CDS
AACTTTACAGAAATGCCCAA+AGG	0.666255	3:+57015688	MsG0380014600.01.T01:CDS
AAGCAAGTGATCACTCCCAC+CGG	0.630745	3:+57008041	MsG0380014600.01.T01:CDS
AAGCAATGCACAGTAAAAGA+TGG	0.574684	3:-57003460	None:intergenic
AAGTCAAATTCTGATCTAAT+TGG	0.285572	3:-57015213	None:intergenic
AAGTCAAATTCTGATCTAAT+TGG	0.285572	3:-57015360	None:intergenic
AAGTCAGCTGTTGATTTAAT+GGG	0.361494	3:+57004403	MsG0380014600.01.T01:CDS
AATGCAGGTTCTGTATACAC+GGG	0.676003	3:+57008196	MsG0380014600.01.T01:intron
AATGTTGCTTGTTCTGTTGA+CGG	0.495775	3:+57015441	MsG0380014600.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACAATCACATTGCAGA+GGG	-	Chr3:57009238-57009257	None:intergenic	30.0%
AAACATAAATGACAATGTCG+AGG	-	Chr3:57013786-57013805	None:intergenic	30.0%
AAAGAGAATGAGTAGTAAAG+AGG	-	Chr3:57011337-57011356	None:intergenic	30.0%
AAAGTTACCATGTTGAAACA+TGG	-	Chr3:57008162-57008181	None:intergenic	30.0%
AAATATGGGTATGGTATTAG+TGG	-	Chr3:57009840-57009859	None:intergenic	30.0%
AACAATGTGACAGAAATACA+TGG	+	Chr3:57015417-57015436	MsG0380014600.01.T01:CDS	30.0%
AACTTGTATGAATACATGGA+TGG	+	Chr3:57009698-57009717	MsG0380014600.01.T01:intron	30.0%
AAGCATGGGTTTCATTATTA+AGG	-	Chr3:57007374-57007393	None:intergenic	30.0%
AATAATTGAGTGATGGCTAA+AGG	+	Chr3:57004162-57004181	MsG0380014600.01.T01:intron	30.0%
AATGAAAGCTTGCAAGAAAA+TGG	-	Chr3:57007742-57007761	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	57003399	57016134	57003399	ID=MsG0380014600.01;Name=MsG0380014600.01
Chr3	mRNA	57003399	57016134	57003399	ID=MsG0380014600.01.T01;Parent=MsG0380014600.01;Name=MsG0380014600.01.T01;_AED=0.36;_eAED=0.36;_QI=196\|0.85\|0.86\|1\|0.92\|0.86\|15\|283\|854
Chr3	exon	57003399	57003598	57003399	ID=MsG0380014600.01.T01:exon:4205;Parent=MsG0380014600.01.T01
Chr3	exon	57004353	57004544	57004353	ID=MsG0380014600.01.T01:exon:4206;Parent=MsG0380014600.01.T01
Chr3	exon	57005508	57005599	57005508	ID=MsG0380014600.01.T01:exon:4207;Parent=MsG0380014600.01.T01
Chr3	exon	57005913	57005982	57005913	ID=MsG0380014600.01.T01:exon:4208;Parent=MsG0380014600.01.T01
Chr3	exon	57006352	57006464	57006352	ID=MsG0380014600.01.T01:exon:4209;Parent=MsG0380014600.01.T01
Chr3	exon	57006670	57006766	57006670	ID=MsG0380014600.01.T01:exon:4210;Parent=MsG0380014600.01.T01
Chr3	exon	57007482	57007735	57007482	ID=MsG0380014600.01.T01:exon:4211;Parent=MsG0380014600.01.T01
Chr3	exon	57007841	57007924	57007841	ID=MsG0380014600.01.T01:exon:4212;Parent=MsG0380014600.01.T01
Chr3	exon	57008002	57008062	57008002	ID=MsG0380014600.01.T01:exon:4213;Parent=MsG0380014600.01.T01
Chr3	exon	57008203	57008263	57008203	ID=MsG0380014600.01.T01:exon:4214;Parent=MsG0380014600.01.T01
Chr3	exon	57008768	57008861	57008768	ID=MsG0380014600.01.T01:exon:4215;Parent=MsG0380014600.01.T01
Chr3	exon	57008949	57009021	57008949	ID=MsG0380014600.01.T01:exon:4216;Parent=MsG0380014600.01.T01
Chr3	exon	57009109	57009191	57009109	ID=MsG0380014600.01.T01:exon:4217;Parent=MsG0380014600.01.T01
Chr3	exon	57009325	57009494	57009325	ID=MsG0380014600.01.T01:exon:4218;Parent=MsG0380014600.01.T01
Chr3	exon	57014735	57016134	57014735	ID=MsG0380014600.01.T01:exon:4219;Parent=MsG0380014600.01.T01
Chr3	five_prime_UTR	57003399	57003594	57003399	ID=MsG0380014600.01.T01:five_prime_utr;Parent=MsG0380014600.01.T01
Chr3	CDS	57003595	57003598	57003595	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57004353	57004544	57004353	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57005508	57005599	57005508	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57005913	57005982	57005913	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57006352	57006464	57006352	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57006670	57006766	57006670	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57007482	57007735	57007482	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57007841	57007924	57007841	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57008002	57008062	57008002	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57008203	57008263	57008203	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57008768	57008861	57008768	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57008949	57009021	57008949	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57009109	57009191	57009109	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57009325	57009494	57009325	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	CDS	57014735	57015851	57014735	ID=MsG0380014600.01.T01:cds;Parent=MsG0380014600.01.T01
Chr3	three_prime_UTR	57015852	57016134	57015852	ID=MsG0380014600.01.T01:three_prime_utr;Parent=MsG0380014600.01.T01

Gene Sequence

>MsG0380014600.01.T01

ATGGTATTTATCAAACTGTTATTTTTAACCAGGTATTTACTGATGGGTACTGCTAAGTCAGCTGTTGATTTAATGGGATCTTCTTCTGAAGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGAAAAGAGAGGCTAGCGTAGAACAACCAACAACATCAGCAACTGATATGTACAACCAACCTTTCGTCATAGGTGTTGCTGGTGGTGCAGCATCCGGCAAAAAAACAGTTTGTGATATGATTGTTCAGCAGCTTCATGACCAGCGAGTTGTGCTTGTTAATCAGGATTCTTTTTACAATAACTTGACTGAGGAGGAACGAGTAAGAGTACAAGATTACAACTTTGATCATCCTGATGCTTTTGATACTGAGGAATTGCTTCGTGTTATGGACAAGTTGAAGCATGGCGAAGCTGTTGATATTCCAAAGTATGACTTCAAGAGTTACAAAAGTGATGCGTTAAGAAGGGTTAACCCTTCAGATGTTATAATTTTGGAAGGCATCCTTGTTTTCCACGATCCTCGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATTTTGACGGTCGATTCCTTCAAGTAAATGAATTTTGGTTGCTGATTCTTATGTTGCAGTATTCAAAATTTGTAAAGCCAGCTTTTGATGACTTCATTCTTCCAACAAAGAAATATGCCGATATCATCATACCTCGTGGAGGAGATAATCACGTGGCTGTTGATTTGATCGTTCAGCACATCCGCACAAAGCTTGGTCAACATGACCTGTGTAAAATATATCCAAATTTATATGTCATTCATTCGACTTTTCAGATACGGGGTATGCATACTCTGATACGTGATGCTCAGATAACGAAGCATGATTTTGTATTTTATTCTGATCGTTTGATTCGATTGGTTGTAGAACATGGTTTGGGGCATCTTCCATTTACAGAAAAGCAAGTGATCACTCCCACCGGTTCTGTATACACGGGTGTGGATTTTTGTAAGAGGTTGTGTGGTGTCTCTGTCATCAGAAGTGGGGAGAGTATGGAGAATGCCTTAAGAGCATGCTGTAAAGGTATTAAGATTGGGAAAATTTTGATCCACAGAGAAGGTGACAATGGTCAACAGCTAATATATGAAAAGTTGCCAAACGATATCTCAGAAAGGCACGTGTTACTGTTGGACCCTATCCTTGGCACAGGTAACTCAGCTGTTCAAGCGATTTCTTTACTTATACAAAAGGGTGTACCAGAGTCCAACATCATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTACATGTGGTATGCAAAAGTTTTCCAAGAATTAAAATAGTGACATCTGAGATAGAGATTGGTTTGAATGAAGATTATCGTGTCATACCGGGAATGGGCGAGTTCGGAGATCGGTACTTTGGAACAGATGATGATGAACAAGTAGTGGTTGCTTCACAGATGCATATGGATCTCGTGTTCGGTTTCTTCAAGAATGCATGTCAGATGCTTAGGGCCAATGGTGAGATTCATGTCAGTCACAAAACTACACCTCCTTTCAATGACTGGAACATTGAGAAGCTCGCCAAGCAAAGCTTTCTGACAATGATTGACTGCATTGATTTCAACAAGGAAGATTATCCAGGTTACAACAACAAACGAGGAGATAGCTATCGATGTGATGAAGCCTTTCATCTCGGTAAGTGCAGCACTTTCAAGTTCATATGCAATCCTAGAAGTATGAAAAACCATTTGAGGGGAAATCATATAGAGATTTCTAGACAACAGACAATTCTTCCATTTCATGAAGAGATTCAGAGCATTGCGCAATTTCCAGCTCCAGTTGATCTCAACTATCTTCATCGAACAAGTTTATTTCCAAAAATGAATCAATTCAATTGTTATCCTCAGACAAATCACTTTCTAAAGTTGAATGAACCAATTAGATCAGAATTTGACTTGAGAAATGGATACAATCCGATCTCAAGGGAGATCATCAATGTGACAGAATTACTTGGAAGGGTTGCTTTTTCTGCTGACGGTTACCACTATCCTCAGACAAATCACTTTCCAAAGTTGAATGAACCAATTAGATCAGAATTTGACTTGAGAAATGGATACAACACGATGTCACGGGAGATCAACAATGTGACAGAAATACATGGAAATGTTGCTTGTTCTGTTGACGGTTACCGCTATGCTCGTGATATGACACAAGACACTCGAAGATTGGTACCACCAATGGAGTCATTGCAATCTCTGCAACCGTGGCCAACGCCAACTAATTGCCGATATTCTCCAACAGAGCCTCTTAGAAGAACAATGGATATGGCTCCTCCTATGTCACTTGGTGCTAGGAATGGAGACTACCAATACAAAGCCTTTGAAGGAAACTCAAGCTATTTGCAAGAAGAACTTTACAGAAATGCCCAAAGGCCAAGCTATTTCCAAGAAGAACCTTACAGAAATGCTCAGATGCCAAGTCACTCTTTTGATATAGCAAGGTATGACTTAGAGAGGTACAATGCTGAAGTGCCTAGGAGAGTTTTCAACAGAGAAATCTATGCTATGCAGTGA

Protein sequence

>MsG0380014600.01.T01

MVFIKLLFLTRYLLMGTAKSAVDLMGSSSEVHFSGFHMDGFEKREASVEQPTTSATDMYNQPFVIGVAGGAASGKKTVCDMIVQQLHDQRVVLVNQDSFYNNLTEEERVRVQDYNFDHPDAFDTEELLRVMDKLKHGEAVDIPKYDFKSYKSDALRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDFDGRFLQVNEFWLLILMLQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAVDLIVQHIRTKLGQHDLCKIYPNLYVIHSTFQIRGMHTLIRDAQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISERHVLLLDPILGTGNSAVQAISLLIQKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDYRVIPGMGEFGDRYFGTDDDEQVVVASQMHMDLVFGFFKNACQMLRANGEIHVSHKTTPPFNDWNIEKLAKQSFLTMIDCIDFNKEDYPGYNNKRGDSYRCDEAFHLGKCSTFKFICNPRSMKNHLRGNHIEISRQQTILPFHEEIQSIAQFPAPVDLNYLHRTSLFPKMNQFNCYPQTNHFLKLNEPIRSEFDLRNGYNPISREIINVTELLGRVAFSADGYHYPQTNHFPKLNEPIRSEFDLRNGYNTMSREINNVTEIHGNVACSVDGYRYARDMTQDTRRLVPPMESLQSLQPWPTPTNCRYSPTEPLRRTMDMAPPMSLGARNGDYQYKAFEGNSSYLQEELYRNAQRPSYFQEEPYRNAQMPSHSFDIARYDLERYNAEVPRRVFNREIYAMQ*