AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014710.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014710.01.T01 MTR_3g462820 96.950 623 16 1 1 623 1 620 0.0 1244
MsG0380014710.01.T01 MTR_5g069800 74.833 600 149 2 21 618 1 600 0.0 946
MsG0380014710.01.T01 MTR_5g069740 74.500 600 139 3 21 618 1 588 0.0 921
MsG0380014710.01.T01 MTR_6g028090 58.472 602 247 3 19 619 22 621 0.0 732
MsG0380014710.01.T01 MTR_6g028100 58.070 601 249 3 19 618 22 620 0.0 721
MsG0380014710.01.T01 MTR_3g079750 58.221 596 244 4 25 618 28 620 0.0 720
MsG0380014710.01.T01 MTR_6g028120 58.140 602 247 4 19 618 3 601 0.0 718
MsG0380014710.01.T01 MTR_2g030000 57.550 596 250 3 25 619 30 623 0.0 717
MsG0380014710.01.T01 MTR_7g086030 57.647 595 249 3 25 618 4 596 0.0 710
MsG0380014710.01.T01 MTR_7g086030 57.647 595 249 3 25 618 29 621 0.0 710
MsG0380014710.01.T01 MTR_6g028110 56.905 601 256 3 19 618 23 621 0.0 709
MsG0380014710.01.T01 MTR_6g028110 56.905 601 256 3 19 618 23 621 0.0 707
MsG0380014710.01.T01 MTR_7g086010 56.541 451 183 3 19 458 22 470 0.0 523
MsG0380014710.01.T01 MTR_3g074060 27.332 611 336 22 25 592 44 589 1.88e-41 161
MsG0380014710.01.T01 MTR_5g062650 26.788 657 379 26 14 622 42 644 5.51e-40 156
MsG0380014710.01.T01 MTR_5g062430 26.893 647 365 26 27 622 52 641 6.67e-40 156
MsG0380014710.01.T01 MTR_5g062320 26.430 647 368 26 27 622 50 639 1.75e-39 155
MsG0380014710.01.T01 MTR_5g062370 26.555 659 373 29 15 622 43 641 3.82e-39 154
MsG0380014710.01.T01 MTR_7g109390 25.621 644 359 27 32 622 49 625 3.31e-36 145
MsG0380014710.01.T01 MTR_5g062370 26.534 603 348 26 15 582 43 585 4.48e-35 140
MsG0380014710.01.T01 MTR_4g094285 24.710 603 356 21 25 592 54 593 6.70e-34 138
MsG0380014710.01.T01 MTR_1g087240 24.096 664 379 28 15 622 27 621 1.85e-32 134
MsG0380014710.01.T01 MTR_2g034720 24.771 654 382 28 15 620 31 622 2.86e-31 130
MsG0380014710.01.T01 MTR_2g008240 26.246 602 334 26 32 592 62 594 3.52e-31 130
MsG0380014710.01.T01 MTR_5g030860 26.299 616 339 30 25 592 42 590 1.60e-27 118
MsG0380014710.01.T01 MTR_1g106860 25.402 622 381 24 3 592 11 581 3.54e-27 117
MsG0380014710.01.T01 MTR_5g069850 70.690 58 17 0 548 605 1 58 1.76e-23 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014710.01.T01 AT3G47000 72.637 603 161 3 19 619 4 604 0.0 934
MsG0380014710.01.T01 AT3G47040 71.452 599 169 2 23 620 8 605 0.0 920
MsG0380014710.01.T01 AT3G47040 68.590 624 169 3 23 620 8 630 0.0 907
MsG0380014710.01.T01 AT3G47050 71.739 598 163 4 24 619 9 602 0.0 892
MsG0380014710.01.T01 AT3G47010 68.272 602 189 2 19 619 5 605 0.0 887
MsG0380014710.01.T01 AT3G47010 68.106 602 189 3 19 619 5 604 0.0 878
MsG0380014710.01.T01 AT3G47040 66.456 632 177 5 23 620 8 638 0.0 873
MsG0380014710.01.T01 AT3G47000 74.664 446 113 0 19 464 4 449 0.0 728
MsG0380014710.01.T01 AT5G04885 57.718 596 248 4 24 618 46 638 0.0 720
MsG0380014710.01.T01 AT5G04885 57.718 596 248 4 24 618 29 621 0.0 719
MsG0380014710.01.T01 AT5G04885 57.718 596 248 4 24 618 29 621 0.0 719
MsG0380014710.01.T01 AT3G47040 73.303 442 118 0 23 464 8 449 0.0 708
MsG0380014710.01.T01 AT3G47010 70.404 446 132 0 19 464 5 450 0.0 689
MsG0380014710.01.T01 AT5G20950 57.286 597 249 5 25 619 104 696 0.0 685
MsG0380014710.01.T01 AT5G20950 57.286 597 249 5 25 619 26 618 0.0 684
MsG0380014710.01.T01 AT5G20950 57.286 597 249 5 25 619 26 618 0.0 684
MsG0380014710.01.T01 AT3G47000 72.028 429 116 3 193 619 1 427 0.0 658
MsG0380014710.01.T01 AT5G20940 55.630 595 258 4 25 618 32 621 0.0 657
MsG0380014710.01.T01 AT3G47010 66.745 427 139 3 193 618 1 425 0.0 614
MsG0380014710.01.T01 AT3G47050 73.118 372 100 0 24 395 9 380 0.0 586
MsG0380014710.01.T01 AT3G62710 47.293 628 280 14 25 618 38 648 0.0 558
MsG0380014710.01.T01 AT5G49360 24.921 634 376 24 29 620 53 628 1.94e-34 140
MsG0380014710.01.T01 AT3G19620 25.156 640 367 26 33 620 49 628 1.50e-33 137
MsG0380014710.01.T01 AT1G02640 26.710 614 316 28 31 592 50 581 3.81e-32 133
MsG0380014710.01.T01 AT5G64570 25.585 641 354 27 3 592 29 597 5.82e-32 132
MsG0380014710.01.T01 AT5G10560 26.766 538 330 21 105 592 78 601 3.61e-30 127
MsG0380014710.01.T01 AT1G78060 25.585 598 351 25 31 592 44 583 9.44e-29 122
MsG0380014710.01.T01 AT5G64570 24.923 650 365 27 3 601 29 606 1.16e-28 121
MsG0380014710.01.T01 AT5G09730 24.878 615 339 25 25 592 49 587 2.68e-28 121
MsG0380014710.01.T01 AT5G64570 26.464 461 291 20 155 592 4 439 3.16e-24 107

Find 160 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTGTTTCCTCTTGGTTT+TGG 0.135169 3:-58778018 MsG0380014710.01.T01:CDS
AGGATGACTTCCATCGTTTC+TGG 0.194101 3:-58780055 MsG0380014710.01.T01:CDS
CTTTGGACTTGGGAGTTCTT+TGG 0.204190 3:+58781893 None:intergenic
CCAGGGAGTTTCAACTATTA+TGG 0.209189 3:-58779705 MsG0380014710.01.T01:CDS
CAGCAACAGTGCGTTCAATT+TGG 0.252117 3:+58781767 None:intergenic
TACGCAATCCATGGCTTCTT+TGG 0.264446 3:+58781876 None:intergenic
AGCAAAGATCTGTCACTTAA+TGG 0.265440 3:+58779124 None:intergenic
ACATTGGTTATTCTGATATC+TGG 0.273731 3:-58778237 MsG0380014710.01.T01:CDS
GACTTGGGAGTTCTTTGGTT+GGG 0.282356 3:+58781898 None:intergenic
GCTGATTTAGTTAGAAGAAT+TGG 0.306520 3:-58780428 MsG0380014710.01.T01:CDS
TGAGAACTCGTTACGTTCTA+TGG 0.306943 3:+58778377 None:intergenic
TTGACCTCTTTAATTGAATC+AGG 0.314382 3:-58779226 MsG0380014710.01.T01:CDS
ATCCATGGCTTCTTTGGACT+TGG 0.316099 3:+58781882 None:intergenic
GCCAACATTGTGAGGAAATA+TGG 0.321167 3:+58780600 None:intergenic
AGATTTCGGTTAAAAGAAAA+TGG 0.333795 3:+58779642 None:intergenic
CTTGGCATACCTCTCATATA+TGG 0.334109 3:-58780664 MsG0380014710.01.T01:CDS
GTCATCTGATTGGGCTGATA+TGG 0.334688 3:-58780722 MsG0380014710.01.T01:CDS
ACGAGCTTCAATGGGTTCAT+TGG 0.350130 3:+58781843 None:intergenic
TTCTTTGGTTGGGGAAGTTA+AGG 0.355909 3:+58781908 None:intergenic
CATGGTAATAATAGTGTCTA+TGG 0.373663 3:-58780628 MsG0380014710.01.T01:CDS
AGCTCCTTATGCCGAGTCAT+TGG 0.384217 3:-58778331 MsG0380014710.01.T01:CDS
CGAGCTTCAATGGGTTCATT+GGG 0.388791 3:+58781844 None:intergenic
GCTAAGAGAATTCTTGTTAC+CGG 0.389610 3:-58778902 MsG0380014710.01.T01:CDS
CTTGTTGCCGCTTGGTTGCC+AGG 0.393551 3:-58778168 MsG0380014710.01.T01:CDS
GTCCTTGATACGAGCTTCAA+TGG 0.394933 3:+58781834 None:intergenic
TGGGAAATGCAGTCTAAATA+AGG 0.395296 3:+58779725 None:intergenic
GATTGGGCTGATATGGTAGA+TGG 0.399635 3:-58780715 MsG0380014710.01.T01:CDS
TGTGAACCTTTGTTTCCTCT+TGG 0.400222 3:-58778024 MsG0380014710.01.T01:CDS
CGCAGGTGATGGTGGCTGTC+AGG 0.400858 3:-58779270 MsG0380014710.01.T01:intron
GGAACACATGCTGATAATCT+TGG 0.401471 3:-58778881 MsG0380014710.01.T01:CDS
ATAGGAAGCATACTAAGTTC+TGG 0.403935 3:-58780772 MsG0380014710.01.T01:intron
CTCTTAGCATTCTTGTTCAA+TGG 0.408954 3:+58778917 None:intergenic
GCCTACCTTCCAGCCACAAA+AGG 0.425345 3:+58779992 None:intergenic
AGAATGCACTGTCATCTGAT+TGG 0.425493 3:-58780732 MsG0380014710.01.T01:CDS
TTCTTGTTCAATGGAAGAAA+AGG 0.426285 3:+58778926 None:intergenic
AACCTCACGGGTCAGATTAT+CGG 0.429896 3:-58779409 MsG0380014710.01.T01:CDS
TATGGAATTGATGCAGTTCA+TGG 0.433577 3:-58780646 MsG0380014710.01.T01:CDS
TTCACCTGATTCAATTAAAG+AGG 0.444760 3:+58779222 None:intergenic
GCTCCTTATGCCGAGTCATT+GGG 0.449392 3:-58778330 MsG0380014710.01.T01:CDS
TCCATGGCTTCTTTGGACTT+GGG 0.455563 3:+58781883 None:intergenic
ATCTCCTCTGCCGTCAATGC+TGG 0.456108 3:-58779380 MsG0380014710.01.T01:CDS
GAATGCACTGTCATCTGATT+GGG 0.458360 3:-58780731 MsG0380014710.01.T01:CDS
GCGTCCTATACTAGCTGGAA+TGG 0.461450 3:-58779683 MsG0380014710.01.T01:CDS
GATATCAGAATAACCAATGT+TGG 0.463933 3:+58778240 None:intergenic
GGACTTGGGAGTTCTTTGGT+TGG 0.469738 3:+58781897 None:intergenic
TTTCCTCACAATGTTGGCCT+CGG 0.478153 3:-58780595 MsG0380014710.01.T01:CDS
ACCATATTTCCTCACAATGT+TGG 0.479078 3:-58780601 MsG0380014710.01.T01:CDS
TTGGATTTCAATGTGGAGGT+TGG 0.482406 3:-58778862 MsG0380014710.01.T01:CDS
TCGCCCAATGACTCGGCATA+AGG 0.482678 3:+58778327 None:intergenic
ACTTGGGAGTTCTTTGGTTG+GGG 0.486069 3:+58781899 None:intergenic
GCATCATCAATTCTGCTCAT+TGG 0.486327 3:+58779196 None:intergenic
GATGACAGTGCATTCTCAAA+TGG 0.487622 3:+58780739 None:intergenic
TAATATCAGTTCCACAGAAA+GGG 0.490916 3:+58778286 None:intergenic
TTATTTAGACTGCATTTCCC+AGG 0.494864 3:-58779723 MsG0380014710.01.T01:CDS
CATGTCAATTCCAGCATTGA+CGG 0.495441 3:+58779370 None:intergenic
CCATAATAGTTGAAACTCCC+TGG 0.499663 3:+58779705 None:intergenic
TTGTGATTTCCGACTGGGAG+GGG 0.500018 3:-58779448 MsG0380014710.01.T01:CDS
ATGACTCTCAACGAGAAGAT+TGG 0.501810 3:-58781799 MsG0380014710.01.T01:CDS
TTGAGAGTAAAGTTTGCTGC+TGG 0.502814 3:-58779160 MsG0380014710.01.T01:CDS
ACACTTCTAAACCAAGTGAC+TGG 0.505394 3:+58778084 None:intergenic
TCATTTGCAATTGTAGCCGT+TGG 0.508906 3:-58778357 MsG0380014710.01.T01:CDS
TCCTTGATACGAGCTTCAAT+GGG 0.510901 3:+58781835 None:intergenic
TTTGTGATTTCCGACTGGGA+GGG 0.512380 3:-58779449 MsG0380014710.01.T01:CDS
TTATGGCGTCCTATACTAGC+TGG 0.515239 3:-58779688 MsG0380014710.01.T01:CDS
GCGCCCATTCCAGCTAGTAT+AGG 0.516093 3:+58779679 None:intergenic
GGAATCACAGATGTGATCTT+CGG 0.520273 3:-58778132 MsG0380014710.01.T01:CDS
ATAATATCAGTTCCACAGAA+AGG 0.521353 3:+58778285 None:intergenic
GGAGTTGACCTTTGAAGTCA+TGG 0.522741 3:+58778106 None:intergenic
ATGTTGGCCTCGGAGCTACT+AGG 0.522765 3:-58780585 MsG0380014710.01.T01:intron
ATATCAGAATAACCAATGTT+GGG 0.524458 3:+58778241 None:intergenic
GCTAGATTCAGTTGGTTGCA+AGG 0.525878 3:-58779104 MsG0380014710.01.T01:intron
ATTCCATCTCCTTCACTACC+TGG 0.526085 3:+58778150 None:intergenic
ACCCATTGAAGCTCGTATCA+AGG 0.527158 3:-58781836 MsG0380014710.01.T01:CDS
GGAAGCAGTTCGAAAGTCGT+TGG 0.527661 3:-58778981 MsG0380014710.01.T01:CDS
AAGGTCAACTCCCAGTCACT+TGG 0.528725 3:-58778095 MsG0380014710.01.T01:CDS
TCCATCACCAACAAAATGCT+TGG 0.529596 3:+58779820 None:intergenic
TTCGGTTAAAAGAAAATGGT+CGG 0.530265 3:+58779646 None:intergenic
ACTCATAAGGGTGTGAATGA+AGG 0.530326 3:-58779794 MsG0380014710.01.T01:CDS
TGGTGATGGAGGTACTCATA+AGG 0.530719 3:-58779807 MsG0380014710.01.T01:CDS
TCCATCGTTTCTGGTTTGCA+AGG 0.531017 3:-58780046 MsG0380014710.01.T01:CDS
CGTCCTATACTAGCTGGAAT+GGG 0.531709 3:-58779682 MsG0380014710.01.T01:CDS
TAGATGCTCTTGTTGCCGCT+TGG 0.531832 3:-58778176 MsG0380014710.01.T01:CDS
AAGATTATCAGCATGTGTTC+CGG 0.531909 3:+58778883 None:intergenic
GAAGTTAAGGAAGTTAAAGA+AGG 0.532097 3:+58781921 None:intergenic
CCTACCTTCCAGCCACAAAA+GGG 0.540848 3:+58779993 None:intergenic
GAGAGGTCTTTGATGACAGA+AGG 0.541378 3:+58781742 None:intergenic
CACTTCTAAACCAAGTGACT+GGG 0.542067 3:+58778085 None:intergenic
AGCCGTCGGAGCTGAAACAC+AGG 0.542683 3:-58778430 MsG0380014710.01.T01:CDS
AGATCTTTGCTAGATTCAGT+TGG 0.542932 3:-58779112 MsG0380014710.01.T01:CDS
AAACGATGGAAGTCATCCTT+CGG 0.544313 3:+58780059 None:intergenic
CATGCAGCAACTCTATCACT+TGG 0.546497 3:+58778045 None:intergenic
TGTTGTATTCACGTCTATGC+CGG 0.547758 3:+58777920 None:intergenic
TCCCAAGTCCAAAGAAGCCA+TGG 0.548173 3:-58781884 MsG0380014710.01.T01:CDS
GTCATCAAAGACCTCTCCAT+TGG 0.555486 3:-58781736 MsG0380014710.01.T01:intron
TGAGAGTCATGCGTGAAAGA+AGG 0.559868 3:+58781812 None:intergenic
GTGGAGGTTGGACTAAAACT+TGG 0.560572 3:-58778850 MsG0380014710.01.T01:CDS
GGTGATGGAGGTACTCATAA+GGG 0.569275 3:-58779806 MsG0380014710.01.T01:CDS
ATTCTTGTATACGCAATCCA+TGG 0.571343 3:+58781867 None:intergenic
TAGAAGAATTGGAGCTGCAA+CGG 0.573556 3:-58780417 MsG0380014710.01.T01:CDS
GACCGACTTTGTAAACCTCA+CGG 0.574208 3:-58779422 MsG0380014710.01.T01:CDS
AACCTGTGTTTCAGCTCCGA+CGG 0.574303 3:+58778428 None:intergenic
AATATTTACGCAGGTGATGG+TGG 0.574548 3:-58779278 MsG0380014710.01.T01:intron
TACAGGTATGCAAAGATCCT+AGG 0.574564 3:-58780126 MsG0380014710.01.T01:intron
AATTCCAGCATTGACGGCAG+AGG 0.576589 3:+58779376 None:intergenic
GAGCTCACAATCCCTTTCTG+TGG 0.577345 3:-58778297 MsG0380014710.01.T01:CDS
AAAACTTGGTATGGTGCTAG+TGG 0.580683 3:-58778836 MsG0380014710.01.T01:CDS
ACCCGTGAGGTTTACAAAGT+CGG 0.583206 3:+58779420 None:intergenic
TCAATTGAGCTATGAAGCAC+CGG 0.584245 3:-58777939 MsG0380014710.01.T01:three_prime_UTR
TTGCAAGGTCAGCCGCCGCA+AGG 0.586294 3:-58780031 MsG0380014710.01.T01:CDS
TTAAAAGAAAATGGTCGGCA+TGG 0.587091 3:+58779651 None:intergenic
ACCGACTTTGTAAACCTCAC+GGG 0.588431 3:-58779421 MsG0380014710.01.T01:CDS
TGAATTGTCGCCCAATGACT+CGG 0.588536 3:+58778320 None:intergenic
TATTTAGACTGCATTTCCCA+GGG 0.588891 3:-58779722 MsG0380014710.01.T01:CDS
CCGCCGCAAGGACATAAACA+TGG 0.591344 3:-58780019 MsG0380014710.01.T01:CDS
AGAGGTCTTTGATGACAGAA+GGG 0.597308 3:+58781743 None:intergenic
TTCGGTAGCCATGACTTCAA+AGG 0.601586 3:-58778114 MsG0380014710.01.T01:CDS
CATAATAGTTGAAACTCCCT+GGG 0.602953 3:+58779706 None:intergenic
ATGTGCCTTACCGCGACACA+AGG 0.603083 3:+58780353 None:intergenic
GCTTGGTTGCCAGGTAGTGA+AGG 0.604762 3:-58778159 MsG0380014710.01.T01:CDS
GGTTGGACTAAAACTTGGTA+TGG 0.605118 3:-58778845 MsG0380014710.01.T01:CDS
AGCCGACAAAATCCCAACAT+TGG 0.608930 3:-58778253 MsG0380014710.01.T01:CDS
AGCCGTGGCTCTAAAACTAA+CGG 0.616971 3:+58778210 None:intergenic
ATTGGGCTGATATGGTAGAT+GGG 0.618321 3:-58780714 MsG0380014710.01.T01:CDS
TAACTTTGCTCCTTGTGTCG+CGG 0.620843 3:-58780363 MsG0380014710.01.T01:intron
ACCTTGCAAACCAGAAACGA+TGG 0.622568 3:+58780045 None:intergenic
GGTATGCAAAGATCCTAGGT+GGG 0.622672 3:-58780122 MsG0380014710.01.T01:CDS
CTTGGTATGGTGCTAGTGGG+AGG 0.629170 3:-58778832 MsG0380014710.01.T01:CDS
AATCTTGGATTTCAATGTGG+AGG 0.629362 3:-58778866 MsG0380014710.01.T01:CDS
GCTCCGAGGCCAACATTGTG+AGG 0.630444 3:+58780592 None:intergenic
AACAACCGCAGTTGTTGTCG+AGG 0.631304 3:-58781961 None:intergenic
TATCCATGTTTATGTCCTTG+CGG 0.631764 3:+58780016 None:intergenic
TTGCCAGGTAGTGAAGGAGA+TGG 0.631782 3:-58778153 MsG0380014710.01.T01:CDS
TCAGCTCTAGAGTCTAGACT+TGG 0.632529 3:-58780682 MsG0380014710.01.T01:CDS
TCGGTCGAGCCCCTCCCAGT+CGG 0.633157 3:+58779439 None:intergenic
TCATAACATCTTCCCCACCT+AGG 0.633875 3:+58780109 None:intergenic
CCATGTTTATGTCCTTGCGG+CGG 0.638425 3:+58780019 None:intergenic
AGGTATGCAAAGATCCTAGG+TGG 0.641153 3:-58780123 MsG0380014710.01.T01:CDS
CCAAAACCAAGAGGAAACAA+AGG 0.642094 3:+58778018 None:intergenic
GCCACATAGAGATCTTGCAC+GGG 0.645982 3:-58779002 MsG0380014710.01.T01:CDS
GCGCTTGAAGTTAAAGCAAG+CGG 0.650262 3:-58780395 MsG0380014710.01.T01:CDS
GATGCTGTTAAAGCAGCCGT+CGG 0.654191 3:-58778444 MsG0380014710.01.T01:CDS
GCTAGTGGGAGGATCACAGT+TGG 0.655699 3:-58778821 MsG0380014710.01.T01:intron
AAACTTGGTATGGTGCTAGT+GGG 0.658815 3:-58778835 MsG0380014710.01.T01:CDS
TCCCGTGCAAGATCTCTATG+TGG 0.660763 3:+58779001 None:intergenic
GTATGCAAAGATCCTAGGTG+GGG 0.661100 3:-58780121 MsG0380014710.01.T01:CDS
AGCCACATAGAGATCTTGCA+CGG 0.661216 3:-58779003 MsG0380014710.01.T01:CDS
GGAAGCATACTAAGTTCTGG+AGG 0.661489 3:-58780769 MsG0380014710.01.T01:CDS
GATAATCTTGGATTTCAATG+TGG 0.662758 3:-58778869 MsG0380014710.01.T01:CDS
CGTCAATGCTGGAATTGACA+TGG 0.663099 3:-58779369 MsG0380014710.01.T01:intron
GAGGTCTTTGATGACAGAAG+GGG 0.664779 3:+58781744 None:intergenic
GCATCAATTCCATATATGAG+AGG 0.665889 3:+58780655 None:intergenic
TGGGGTTACTACCAATGGAG+AGG 0.672659 3:+58781725 None:intergenic
AAGACACTGAAATAGTCCGA+AGG 0.673498 3:-58780075 MsG0380014710.01.T01:CDS
TAGTTTAACCCAAAACCAAG+AGG 0.675446 3:+58778009 None:intergenic
TCTATCTTTACCAAAAGCCG+TGG 0.689522 3:+58778195 None:intergenic
GGCATAAGGAGCTTCACCAA+CGG 0.690684 3:+58778341 None:intergenic
AGACTTAGAGAGAATACACA+TGG 0.711757 3:-58779750 MsG0380014710.01.T01:CDS
TTCACTACCTGGCAACCAAG+CGG 0.717614 3:+58778161 None:intergenic
TACCGATAATCTGACCCGTG+AGG 0.751905 3:+58779407 None:intergenic
ATACTAACCTAGTAGCTCCG+AGG 0.755210 3:+58780578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAAATTCATATATTTTA+AGG - Chr3:58778896-58778915 MsG0380014710.01.T01:CDS 10.0%
!! ACATATGTTTATTTATTGTA+AGG - Chr3:58781069-58781088 MsG0380014710.01.T01:intron 15.0%
!! ATCTACTTATAATAAGTAAA+AGG - Chr3:58778919-58778938 MsG0380014710.01.T01:CDS 15.0%
!! ATTTATTTGGTTAAATATAC+AGG - Chr3:58779670-58779689 MsG0380014710.01.T01:CDS 15.0%
!! TCTACTTATAATAAGTAAAA+GGG - Chr3:58778920-58778939 MsG0380014710.01.T01:CDS 15.0%
!!! AAAAATTAACTATTTCTGTT+CGG - Chr3:58779894-58779913 MsG0380014710.01.T01:intron 15.0%
!!! AAACTATAGTTTGTAATATT+TGG - Chr3:58778691-58778710 MsG0380014710.01.T01:intron 15.0%
!! AAAAAGATTGACTAAAATGA+TGG + Chr3:58778185-58778204 None:intergenic 20.0%
!! ACACTATGATTAAAGATAAT+TGG + Chr3:58780485-58780504 None:intergenic 20.0%
!! AGCTAATATTGCAAAAAATT+TGG + Chr3:58780294-58780313 None:intergenic 20.0%
!! ATAAAGGAAAGTGATTTATT+TGG - Chr3:58779657-58779676 MsG0380014710.01.T01:CDS 20.0%
!! TGGATTTAACAATAAATTGA+TGG + Chr3:58778736-58778755 None:intergenic 20.0%
!!! AGAATTGATTTTATCATGTT+TGG - Chr3:58778639-58778658 MsG0380014710.01.T01:intron 20.0%
!!! TAGTTTTTCTTTCAAGATTT+CGG + Chr3:58780188-58780207 None:intergenic 20.0%
!!! TGATTATATCTGCATTTTAT+AGG - Chr3:58779023-58779042 MsG0380014710.01.T01:intron 20.0%
!!! TTAATGTATTTCTGTAAAAG+TGG + Chr3:58778756-58778775 None:intergenic 20.0%
!!! TTTATTGTATCTTTTGGTAT+AGG - Chr3:58778516-58778535 MsG0380014710.01.T01:intron 20.0%
!!! TTTGACTTTATTGTATCTTT+TGG - Chr3:58778510-58778529 MsG0380014710.01.T01:intron 20.0%
!!! TTTTTTCTTTGTGTTGATTT+GGG - Chr3:58778981-58779000 MsG0380014710.01.T01:CDS 20.0%
!!! TTTTTTTCTTTGTGTTGATT+TGG - Chr3:58778980-58778999 MsG0380014710.01.T01:CDS 20.0%
! AACATACCAAAACACATTTA+TGG - Chr3:58781228-58781247 MsG0380014710.01.T01:intron 25.0%
! ACATACCAAAACACATTTAT+GGG - Chr3:58781229-58781248 MsG0380014710.01.T01:intron 25.0%
! AGAAAAAATACAGAACAAAC+AGG + Chr3:58781277-58781296 None:intergenic 25.0%
! AGATTTCGGTTAAAAGAAAA+TGG + Chr3:58780174-58780193 None:intergenic 25.0%
! ATATCAGAATAACCAATGTT+GGG + Chr3:58781575-58781594 None:intergenic 25.0%
! ATCATGTTTGGATGATTTAA+AGG - Chr3:58778651-58778670 MsG0380014710.01.T01:intron 25.0%
! GAAATCTTGAAAGAAAAACT+AGG - Chr3:58780187-58780206 MsG0380014710.01.T01:intron 25.0%
! TGAAGTACAACTTAAACATA+AGG + Chr3:58779952-58779971 None:intergenic 25.0%
! TTGGTAAGCTATGATATTTA+TGG - Chr3:58781011-58781030 MsG0380014710.01.T01:intron 25.0%
! TTTCCTTTATTGTCTAGATT+GGG + Chr3:58779647-58779666 None:intergenic 25.0%
!! AAACAAACTTCAATTTTCGA+GGG - Chr3:58778592-58778611 MsG0380014710.01.T01:intron 25.0%
!! AAGCTACATTTTATCACTTT+CGG + Chr3:58781128-58781147 None:intergenic 25.0%
!! ATGATAATGCTGCTATAATT+TGG - Chr3:58779319-58779338 MsG0380014710.01.T01:intron 25.0%
!! GAAAGAAAAACTAGGTTTTA+AGG - Chr3:58780195-58780214 MsG0380014710.01.T01:intron 25.0%
!! TGATAATGCTGCTATAATTT+GGG - Chr3:58779320-58779339 MsG0380014710.01.T01:intron 25.0%
!! TTCTAAGTAAAACTCTGAAA+TGG + Chr3:58778111-58778130 None:intergenic 25.0%
!!! TATGTTTAAGTTGTACTTCA+GGG - Chr3:58779952-58779971 MsG0380014710.01.T01:intron 25.0%
!!! TCTAAGTAAAACTCTGAAAT+GGG + Chr3:58778110-58778129 None:intergenic 25.0%
!!! TTATGTTTAAGTTGTACTTC+AGG - Chr3:58779951-58779970 MsG0380014710.01.T01:intron 25.0%
AATAATATTTACGCAGGTGA+TGG - Chr3:58780532-58780551 MsG0380014710.01.T01:intron 30.0%
AATGACTGATTATCTATCAC+TGG - Chr3:58780221-58780240 MsG0380014710.01.T01:intron 30.0%
ATAATATCAGTTCCACAGAA+AGG + Chr3:58781531-58781550 None:intergenic 30.0%
ATCACCTGCGTAAATATTAT+TGG + Chr3:58780533-58780552 None:intergenic 30.0%
CAAGATTGTTGAACCTAAAA+TGG + Chr3:58781349-58781368 None:intergenic 30.0%
CAATCCAATAATATTTACGC+AGG - Chr3:58780526-58780545 MsG0380014710.01.T01:intron 30.0%
CACATGCAAACAATTAATCA+GGG + Chr3:58780769-58780788 None:intergenic 30.0%
CATACCAAAACACATTTATG+GGG - Chr3:58781230-58781249 MsG0380014710.01.T01:intron 30.0%
CATGGTAATAATAGTGTCTA+TGG - Chr3:58779185-58779204 MsG0380014710.01.T01:CDS 30.0%
CTGCGTAAATATTATTGGAT+TGG + Chr3:58780528-58780547 None:intergenic 30.0%
CTTTCCTTTATTGTCTAGAT+TGG + Chr3:58779648-58779667 None:intergenic 30.0%
GAAGTTAAGGAAGTTAAAGA+AGG + Chr3:58777895-58777914 None:intergenic 30.0%
GATAATCTTGGATTTCAATG+TGG - Chr3:58780944-58780963 MsG0380014710.01.T01:intron 30.0%
GATATCAGAATAACCAATGT+TGG + Chr3:58781576-58781595 None:intergenic 30.0%
GTAAGGTATACAAGTTAATG+TGG + Chr3:58781327-58781346 None:intergenic 30.0%
TAATATCAGTTCCACAGAAA+GGG + Chr3:58781530-58781549 None:intergenic 30.0%
TCTGAACAAGAGTTAAAACA+AGG - Chr3:58779574-58779593 MsG0380014710.01.T01:intron 30.0%
TGAATTTATTCCACTAGTAC+CGG + Chr3:58778887-58778906 None:intergenic 30.0%
TTCACCTGATTCAATTAAAG+AGG + Chr3:58780594-58780613 None:intergenic 30.0%
TTCGGTTAAAAGAAAATGGT+CGG + Chr3:58780170-58780189 None:intergenic 30.0%
TTCTTGTTCAATGGAAGAAA+AGG + Chr3:58780890-58780909 None:intergenic 30.0%
TTGACCTCTTTAATTGAATC+AGG - Chr3:58780587-58780606 MsG0380014710.01.T01:CDS 30.0%
TTGTTGAACCTAAAATGGTA+AGG + Chr3:58781344-58781363 None:intergenic 30.0%
TTTCCCAATCTAGACAATAA+AGG - Chr3:58779641-58779660 MsG0380014710.01.T01:CDS 30.0%
! ACATTGGTTATTCTGATATC+TGG - Chr3:58781576-58781595 MsG0380014710.01.T01:intron 30.0%
! ATTTCCCCATAAATGTGTTT+TGG + Chr3:58781237-58781256 None:intergenic 30.0%
! CAAACAAACTTCAATTTTCG+AGG - Chr3:58778591-58778610 MsG0380014710.01.T01:intron 30.0%
! CTTGTATACCTTACCATTTT+AGG - Chr3:58781333-58781352 MsG0380014710.01.T01:intron 30.0%
! GCTGATTTAGTTAGAAGAAT+TGG - Chr3:58779385-58779404 MsG0380014710.01.T01:CDS 30.0%
! TAGATTTTGTTCAGAAACCT+TGG - Chr3:58781097-58781116 MsG0380014710.01.T01:intron 30.0%
! TTGAGTGTGTAAGTATTGTT+CGG - Chr3:58778274-58778293 MsG0380014710.01.T01:CDS 30.0%
! TTTTTCTCCGTTGTTAAACT+AGG - Chr3:58781290-58781309 MsG0380014710.01.T01:intron 30.0%
!! AACAAACTTCAATTTTCGAG+GGG - Chr3:58778593-58778612 MsG0380014710.01.T01:intron 30.0%
!! CTAAGTAAAACTCTGAAATG+GGG + Chr3:58778109-58778128 None:intergenic 30.0%
!!! CATTTTAGGTTCAACAATCT+TGG - Chr3:58781347-58781366 MsG0380014710.01.T01:intron 30.0%
!!! TCGTTGGTTTTGTTGAAAAA+TGG - Chr3:58780848-58780867 MsG0380014710.01.T01:intron 30.0%
AAGATTATCAGCATGTGTTC+CGG + Chr3:58780933-58780952 None:intergenic 35.0%
AAGATTGATTGCAGTGTGTT+TGG - Chr3:58781042-58781061 MsG0380014710.01.T01:intron 35.0%
AAGCATTTATGAGACACCTT+AGG - Chr3:58778442-58778461 MsG0380014710.01.T01:CDS 35.0%
AATCTTGGATTTCAATGTGG+AGG - Chr3:58780947-58780966 MsG0380014710.01.T01:intron 35.0%
ACCATATTTCCTCACAATGT+TGG - Chr3:58779212-58779231 MsG0380014710.01.T01:CDS 35.0%
ACGACAACCTAGTTTAACAA+CGG + Chr3:58781300-58781319 None:intergenic 35.0%
AGACTGTTTAGAAGAGCTTA+TGG - Chr3:58778353-58778372 MsG0380014710.01.T01:CDS 35.0%
AGACTTAGAGAGAATACACA+TGG - Chr3:58780063-58780082 MsG0380014710.01.T01:CDS 35.0%
AGATCTTTGCTAGATTCAGT+TGG - Chr3:58780701-58780720 MsG0380014710.01.T01:CDS 35.0%
ATTCTTGTATACGCAATCCA+TGG + Chr3:58777949-58777968 None:intergenic 35.0%
ATTGTTTGCATGTGCCATAA+TGG - Chr3:58780775-58780794 MsG0380014710.01.T01:intron 35.0%
CATAATAGTTGAAACTCCCT+GGG + Chr3:58780110-58780129 None:intergenic 35.0%
CATCCAAGAAAGTCAAAAAC+TGG + Chr3:58779347-58779366 None:intergenic 35.0%
CTCTTAGCATTCTTGTTCAA+TGG + Chr3:58780899-58780918 None:intergenic 35.0%
GCACATGCAAACAATTAATC+AGG + Chr3:58780770-58780789 None:intergenic 35.0%
GCATCAATTCCATATATGAG+AGG + Chr3:58779161-58779180 None:intergenic 35.0%
GCTAAGAGAATTCTTGTTAC+CGG - Chr3:58780911-58780930 MsG0380014710.01.T01:intron 35.0%
TAGTTTAACCCAAAACCAAG+AGG + Chr3:58781807-58781826 None:intergenic 35.0%
TATCCATGTTTATGTCCTTG+CGG + Chr3:58779800-58779819 None:intergenic 35.0%
TATGGAATTGATGCAGTTCA+TGG - Chr3:58779167-58779186 MsG0380014710.01.T01:CDS 35.0%
TATTGACAATTGCTGCTGTA+GGG - Chr3:58780340-58780359 MsG0380014710.01.T01:intron 35.0%
TATTTAGACTGCATTTCCCA+GGG - Chr3:58780091-58780110 MsG0380014710.01.T01:CDS 35.0%
TGGGAAATGCAGTCTAAATA+AGG + Chr3:58780091-58780110 None:intergenic 35.0%
TTAAAAGAAAATGGTCGGCA+TGG + Chr3:58780165-58780184 None:intergenic 35.0%
TTATTGACAATTGCTGCTGT+AGG - Chr3:58780339-58780358 MsG0380014710.01.T01:intron 35.0%
TTATTTAGACTGCATTTCCC+AGG - Chr3:58780090-58780109 MsG0380014710.01.T01:CDS 35.0%
! AACCAATGTTGGGATTTTGT+CGG + Chr3:58781565-58781584 None:intergenic 35.0%
! AGCAAAGATCTGTCACTTAA+TGG + Chr3:58780692-58780711 None:intergenic 35.0%
! ATAGGAAGCATACTAAGTTC+TGG - Chr3:58779041-58779060 MsG0380014710.01.T01:intron 35.0%
! TAAACATGGATACCCTTTTG+TGG - Chr3:58779808-58779827 MsG0380014710.01.T01:CDS 35.0%
! TGAGTGTGTAAGTATTGTTC+GGG - Chr3:58778275-58778294 MsG0380014710.01.T01:CDS 35.0%
!! CTGCAAAAGAAGTACCATTA+TGG + Chr3:58780792-58780811 None:intergenic 35.0%
!! CTTTGTTTCCTCTTGGTTTT+GGG - Chr3:58781796-58781815 MsG0380014710.01.T01:CDS 35.0%
!! GTTAGGGCATTTTCATGAAT+TGG - Chr3:58778381-58778400 MsG0380014710.01.T01:CDS 35.0%
!! TAAGTATTGTTCGGGTTGTT+TGG - Chr3:58778283-58778302 MsG0380014710.01.T01:CDS 35.0%
!! TTCTTTGTGTTGATTTGGGT+TGG - Chr3:58778985-58779004 MsG0380014710.01.T01:CDS 35.0%
!!! CAGTTTTTGACTTTCTTGGA+TGG - Chr3:58779345-58779364 MsG0380014710.01.T01:intron 35.0%
AAACGATGGAAGTCATCCTT+CGG + Chr3:58779757-58779776 None:intergenic 40.0%
AAGACACTGAAATAGTCCGA+AGG - Chr3:58779738-58779757 MsG0380014710.01.T01:CDS 40.0%
AAGAGCTTATGGAACACGTT+AGG - Chr3:58778364-58778383 MsG0380014710.01.T01:CDS 40.0%
ACACTTCTAAACCAAGTGAC+TGG + Chr3:58781732-58781751 None:intergenic 40.0%
AGAATGCACTGTCATCTGAT+TGG - Chr3:58779081-58779100 MsG0380014710.01.T01:intron 40.0%
AGAGCTTATGGAACACGTTA+GGG - Chr3:58778365-58778384 MsG0380014710.01.T01:CDS 40.0%
ATCACTTTATCCGGTACTAG+TGG - Chr3:58778874-58778893 MsG0380014710.01.T01:CDS 40.0%
ATGACTCTCAACGAGAAGAT+TGG - Chr3:58778014-58778033 MsG0380014710.01.T01:CDS 40.0%
ATTGGGCTGATATGGTAGAT+GGG - Chr3:58779099-58779118 MsG0380014710.01.T01:intron 40.0%
CAACTCATGAACATGTCCTA+AGG + Chr3:58778461-58778480 None:intergenic 40.0%
CAAGAGTTAAAACAAGGACG+TGG - Chr3:58779580-58779599 MsG0380014710.01.T01:intron 40.0%
CACTTCTAAACCAAGTGACT+GGG + Chr3:58781731-58781750 None:intergenic 40.0%
CCAAAACCAAGAGGAAACAA+AGG + Chr3:58781798-58781817 None:intergenic 40.0%
CCAGGGAGTTTCAACTATTA+TGG - Chr3:58780108-58780127 MsG0380014710.01.T01:CDS 40.0%
CCATAATAGTTGAAACTCCC+TGG + Chr3:58780111-58780130 None:intergenic 40.0%
CTGTCGTGCTTATTGCTTAA+TGG - Chr3:58779267-58779286 MsG0380014710.01.T01:CDS 40.0%
CTTGCACGTATCACTTTATC+CGG - Chr3:58778865-58778884 MsG0380014710.01.T01:CDS 40.0%
CTTGGCATACCTCTCATATA+TGG - Chr3:58779149-58779168 MsG0380014710.01.T01:CDS 40.0%
GAATGCACTGTCATCTGATT+GGG - Chr3:58779082-58779101 MsG0380014710.01.T01:intron 40.0%
GATGACAGTGCATTCTCAAA+TGG + Chr3:58779077-58779096 None:intergenic 40.0%
GCATCATCAATTCTGCTCAT+TGG + Chr3:58780620-58780639 None:intergenic 40.0%
GCCAACATTGTGAGGAAATA+TGG + Chr3:58779216-58779235 None:intergenic 40.0%
GGAACACATGCTGATAATCT+TGG - Chr3:58780932-58780951 MsG0380014710.01.T01:intron 40.0%
GGAATCACAGATGTGATCTT+CGG - Chr3:58781681-58781700 MsG0380014710.01.T01:intron 40.0%
GGATAAAGTGATACGTGCAA+GGG + Chr3:58778866-58778885 None:intergenic 40.0%
GGTTGGACTAAAACTTGGTA+TGG - Chr3:58780968-58780987 MsG0380014710.01.T01:intron 40.0%
TACAGGTATGCAAAGATCCT+AGG - Chr3:58779687-58779706 MsG0380014710.01.T01:CDS 40.0%
TAGAAGAATTGGAGCTGCAA+CGG - Chr3:58779396-58779415 MsG0380014710.01.T01:CDS 40.0%
TATCACTTTCGGTCAAACCA+AGG + Chr3:58781117-58781136 None:intergenic 40.0%
TCAATTGAGCTATGAAGCAC+CGG - Chr3:58781874-58781893 MsG0380014710.01.T01:CDS 40.0%
TCATTTGCAATTGTAGCCGT+TGG - Chr3:58781456-58781475 MsG0380014710.01.T01:intron 40.0%
TCCATCACCAACAAAATGCT+TGG + Chr3:58779996-58780015 None:intergenic 40.0%
TCCTTGATACGAGCTTCAAT+GGG + Chr3:58777981-58778000 None:intergenic 40.0%
TCTATCTTTACCAAAAGCCG+TGG + Chr3:58781621-58781640 None:intergenic 40.0%
TGAAATGGGGTTACTACCAA+TGG + Chr3:58778096-58778115 None:intergenic 40.0%
TGAGAACTCGTTACGTTCTA+TGG + Chr3:58781439-58781458 None:intergenic 40.0%
TGTTGTATTCACGTCTATGC+CGG + Chr3:58781896-58781915 None:intergenic 40.0%
TTCTTTGGTTGGGGAAGTTA+AGG + Chr3:58777908-58777927 None:intergenic 40.0%
TTGGATTTCAATGTGGAGGT+TGG - Chr3:58780951-58780970 MsG0380014710.01.T01:intron 40.0%
! AAAACTTGGTATGGTGCTAG+TGG - Chr3:58780977-58780996 MsG0380014710.01.T01:intron 40.0%
! AAACTTGGTATGGTGCTAGT+GGG - Chr3:58780978-58780997 MsG0380014710.01.T01:intron 40.0%
! AATATTTACGCAGGTGATGG+TGG - Chr3:58780535-58780554 MsG0380014710.01.T01:intron 40.0%
! ACTCATAAGGGTGTGAATGA+AGG - Chr3:58780019-58780038 MsG0380014710.01.T01:CDS 40.0%
! AGAGGTCTTTGATGACAGAA+GGG + Chr3:58778073-58778092 None:intergenic 40.0%
! CATGTCAATTCCAGCATTGA+CGG + Chr3:58780446-58780465 None:intergenic 40.0%
! CGTTCTATGGTGTTTTCTGA+TGG + Chr3:58781426-58781445 None:intergenic 40.0%
! GGGGTCAAAATTGATTCTAG+AGG - Chr3:58778612-58778631 MsG0380014710.01.T01:intron 40.0%
! TGTGAACCTTTGTTTCCTCT+TGG - Chr3:58781789-58781808 MsG0380014710.01.T01:CDS 40.0%
!! CCTTTGTTTCCTCTTGGTTT+TGG - Chr3:58781795-58781814 MsG0380014710.01.T01:CDS 40.0%
!! TTGAGAGTAAAGTTTGCTGC+TGG - Chr3:58780653-58780672 MsG0380014710.01.T01:CDS 40.0%
!!! AAGCATTTTGTTGGTGATGG+AGG - Chr3:58779995-58780014 MsG0380014710.01.T01:intron 40.0%
!!! GGACCAGTTTTTGACTTTCT+TGG - Chr3:58779341-58779360 MsG0380014710.01.T01:intron 40.0%
AACCTCACGGGTCAGATTAT+CGG - Chr3:58780404-58780423 MsG0380014710.01.T01:CDS 45.0%
ACCCATTGAAGCTCGTATCA+AGG - Chr3:58777977-58777996 MsG0380014710.01.T01:exon 45.0%
ACCCGTGAGGTTTACAAAGT+CGG + Chr3:58780396-58780415 None:intergenic 45.0%
ACCTTGCAAACCAGAAACGA+TGG + Chr3:58779771-58779790 None:intergenic 45.0%
ACTTGGGAGTTCTTTGGTTG+GGG + Chr3:58777917-58777936 None:intergenic 45.0%
AGCCACATAGAGATCTTGCA+CGG - Chr3:58780810-58780829 MsG0380014710.01.T01:intron 45.0%
AGCCGACAAAATCCCAACAT+TGG - Chr3:58781560-58781579 MsG0380014710.01.T01:intron 45.0%
AGGATGACTTCCATCGTTTC+TGG - Chr3:58779758-58779777 MsG0380014710.01.T01:CDS 45.0%
AGGGTTACTAGGTGTGTGTT+TGG + Chr3:58778847-58778866 None:intergenic 45.0%
AGGTATGCAAAGATCCTAGG+TGG - Chr3:58779690-58779709 MsG0380014710.01.T01:CDS 45.0%
ATACTAACCTAGTAGCTCCG+AGG + Chr3:58779238-58779257 None:intergenic 45.0%
ATCCATGGCTTCTTTGGACT+TGG + Chr3:58777934-58777953 None:intergenic 45.0%
ATTCCATCTCCTTCACTACC+TGG + Chr3:58781666-58781685 None:intergenic 45.0%
CAGCAACAGTGCGTTCAATT+TGG + Chr3:58778049-58778068 None:intergenic 45.0%
CATGCAGCAACTCTATCACT+TGG + Chr3:58781771-58781790 None:intergenic 45.0%
CGGATAAAGTGATACGTGCA+AGG + Chr3:58778867-58778886 None:intergenic 45.0%
CGTCAATGCTGGAATTGACA+TGG - Chr3:58780444-58780463 MsG0380014710.01.T01:intron 45.0%
CGTCCTATACTAGCTGGAAT+GGG - Chr3:58780131-58780150 MsG0380014710.01.T01:intron 45.0%
CTTTGGACTTGGGAGTTCTT+TGG + Chr3:58777923-58777942 None:intergenic 45.0%
GACTTGGGAGTTCTTTGGTT+GGG + Chr3:58777918-58777937 None:intergenic 45.0%
GATTGGGCTGATATGGTAGA+TGG - Chr3:58779098-58779117 MsG0380014710.01.T01:intron 45.0%
GCGCTTGAAGTTAAAGCAAG+CGG - Chr3:58779418-58779437 MsG0380014710.01.T01:CDS 45.0%
GCTAGATTCAGTTGGTTGCA+AGG - Chr3:58780709-58780728 MsG0380014710.01.T01:CDS 45.0%
GGTATGCAAAGATCCTAGGT+GGG - Chr3:58779691-58779710 MsG0380014710.01.T01:CDS 45.0%
GTATGCAAAGATCCTAGGTG+GGG - Chr3:58779692-58779711 MsG0380014710.01.T01:CDS 45.0%
GTCATCAAAGACCTCTCCAT+TGG - Chr3:58778077-58778096 MsG0380014710.01.T01:CDS 45.0%
GTCATCTGATTGGGCTGATA+TGG - Chr3:58779091-58779110 MsG0380014710.01.T01:intron 45.0%
GTCCTTGATACGAGCTTCAA+TGG + Chr3:58777982-58778001 None:intergenic 45.0%
GTGGAGGTTGGACTAAAACT+TGG - Chr3:58780963-58780982 MsG0380014710.01.T01:intron 45.0%
TAACTTTGCTCCTTGTGTCG+CGG - Chr3:58779450-58779469 MsG0380014710.01.T01:CDS 45.0%
TACGCAATCCATGGCTTCTT+TGG + Chr3:58777940-58777959 None:intergenic 45.0%
TCATAACATCTTCCCCACCT+AGG + Chr3:58779707-58779726 None:intergenic 45.0%
TCCATGGCTTCTTTGGACTT+GGG + Chr3:58777933-58777952 None:intergenic 45.0%
TGAATTGTCGCCCAATGACT+CGG + Chr3:58781496-58781515 None:intergenic 45.0%
TGAGAGTCATGCGTGAAAGA+AGG + Chr3:58778004-58778023 None:intergenic 45.0%
TGATACGTGCAAGGGTTACT+AGG + Chr3:58778858-58778877 None:intergenic 45.0%
TTATGGCGTCCTATACTAGC+TGG - Chr3:58780125-58780144 MsG0380014710.01.T01:intron 45.0%
TTCGGTAGCCATGACTTCAA+AGG - Chr3:58781699-58781718 MsG0380014710.01.T01:intron 45.0%
TTTGTGATTTCCGACTGGGA+GGG - Chr3:58780364-58780383 MsG0380014710.01.T01:CDS 45.0%
! ACCGACTTTGTAAACCTCAC+GGG - Chr3:58780392-58780411 MsG0380014710.01.T01:CDS 45.0%
! ACGAGCTTCAATGGGTTCAT+TGG + Chr3:58777973-58777992 None:intergenic 45.0%
! CGAGCTTCAATGGGTTCATT+GGG + Chr3:58777972-58777991 None:intergenic 45.0%
! GACCGACTTTGTAAACCTCA+CGG - Chr3:58780391-58780410 MsG0380014710.01.T01:CDS 45.0%
! GAGAGGTCTTTGATGACAGA+AGG + Chr3:58778074-58778093 None:intergenic 45.0%
! GAGGTCTTTGATGACAGAAG+GGG + Chr3:58778072-58778091 None:intergenic 45.0%
! GCATGTGCCAAGCATTTTGT+TGG - Chr3:58779986-58780005 MsG0380014710.01.T01:intron 45.0%
! GGAAGCATACTAAGTTCTGG+AGG - Chr3:58779044-58779063 MsG0380014710.01.T01:intron 45.0%
! TTTCCTCACAATGTTGGCCT+CGG - Chr3:58779218-58779237 MsG0380014710.01.T01:CDS 45.0%
! TTTTGTGATTTCCGACTGGG+AGG - Chr3:58780363-58780382 MsG0380014710.01.T01:intron 45.0%
!! AGCCGTGGCTCTAAAACTAA+CGG + Chr3:58781606-58781625 None:intergenic 45.0%
!! AGGGTTTTGTGATTTCCGAC+TGG - Chr3:58780359-58780378 MsG0380014710.01.T01:intron 45.0%
!! GCCAAGCATTTTGTTGGTGA+TGG - Chr3:58779992-58780011 MsG0380014710.01.T01:intron 45.0%
!! GGAGTTGACCTTTGAAGTCA+TGG + Chr3:58781710-58781729 None:intergenic 45.0%
!! GGGTTTTGTGATTTCCGACT+GGG - Chr3:58780360-58780379 MsG0380014710.01.T01:intron 45.0%
!! GGTGATGGAGGTACTCATAA+GGG - Chr3:58780007-58780026 MsG0380014710.01.T01:CDS 45.0%
!! TCAGCTCTAGAGTCTAGACT+TGG - Chr3:58779131-58779150 MsG0380014710.01.T01:CDS 45.0%
!! TCCATCGTTTCTGGTTTGCA+AGG - Chr3:58779767-58779786 MsG0380014710.01.T01:CDS 45.0%
!! TGGTGATGGAGGTACTCATA+AGG - Chr3:58780006-58780025 MsG0380014710.01.T01:CDS 45.0%
!!! AGTTTTAGAGCCACGGCTTT+TGG - Chr3:58781608-58781627 MsG0380014710.01.T01:intron 45.0%
!!! GACCGTTAGTTTTAGAGCCA+CGG - Chr3:58781601-58781620 MsG0380014710.01.T01:intron 45.0%
AACCTGTGTTTCAGCTCCGA+CGG + Chr3:58781388-58781407 None:intergenic 50.0%
AAGGTCAACTCCCAGTCACT+TGG - Chr3:58781718-58781737 MsG0380014710.01.T01:intron 50.0%
AGCTCCTTATGCCGAGTCAT+TGG - Chr3:58781482-58781501 MsG0380014710.01.T01:intron 50.0%
CCATGTTTATGTCCTTGCGG+CGG + Chr3:58779797-58779816 None:intergenic 50.0%
CCTACCTTCCAGCCACAAAA+GGG + Chr3:58779823-58779842 None:intergenic 50.0%
GAGCTCACAATCCCTTTCTG+TGG - Chr3:58781516-58781535 MsG0380014710.01.T01:intron 50.0%
GATGCTGTTAAAGCAGCCGT+CGG - Chr3:58781369-58781388 MsG0380014710.01.T01:intron 50.0%
GCCACATAGAGATCTTGCAC+GGG - Chr3:58780811-58780830 MsG0380014710.01.T01:intron 50.0%
GCGTCCTATACTAGCTGGAA+TGG - Chr3:58780130-58780149 MsG0380014710.01.T01:intron 50.0%
GCTCCTTATGCCGAGTCATT+GGG - Chr3:58781483-58781502 MsG0380014710.01.T01:intron 50.0%
GGAAGCAGTTCGAAAGTCGT+TGG - Chr3:58780832-58780851 MsG0380014710.01.T01:intron 50.0%
GGACTTGGGAGTTCTTTGGT+TGG + Chr3:58777919-58777938 None:intergenic 50.0%
GGCATAAGGAGCTTCACCAA+CGG + Chr3:58781475-58781494 None:intergenic 50.0%
TACCGATAATCTGACCCGTG+AGG + Chr3:58780409-58780428 None:intergenic 50.0%
TAGATGCTCTTGTTGCCGCT+TGG - Chr3:58781637-58781656 MsG0380014710.01.T01:intron 50.0%
TCCCAAGTCCAAAGAAGCCA+TGG - Chr3:58777929-58777948 MsG0380014710.01.T01:three_prime_UTR 50.0%
TCCCGTGCAAGATCTCTATG+TGG + Chr3:58780815-58780834 None:intergenic 50.0%
TGGGGTTACTACCAATGGAG+AGG + Chr3:58778091-58778110 None:intergenic 50.0%
TTCACTACCTGGCAACCAAG+CGG + Chr3:58781655-58781674 None:intergenic 50.0%
TTGCCAGGTAGTGAAGGAGA+TGG - Chr3:58781660-58781679 MsG0380014710.01.T01:intron 50.0%
TTGTGATTTCCGACTGGGAG+GGG - Chr3:58780365-58780384 MsG0380014710.01.T01:CDS 50.0%
! CATGGATACCCTTTTGTGGC+TGG - Chr3:58779812-58779831 MsG0380014710.01.T01:CDS 50.0%
! GATACCCTTTTGTGGCTGGA+AGG - Chr3:58779816-58779835 MsG0380014710.01.T01:CDS 50.0%
!! AATTCCAGCATTGACGGCAG+AGG + Chr3:58780440-58780459 None:intergenic 50.0%
ATCTCCTCTGCCGTCAATGC+TGG - Chr3:58780433-58780452 MsG0380014710.01.T01:CDS 55.0%
ATGTGCCTTACCGCGACACA+AGG + Chr3:58779463-58779482 None:intergenic 55.0%
CCGCCGCAAGGACATAAACA+TGG - Chr3:58779794-58779813 MsG0380014710.01.T01:CDS 55.0%
GCCTACCTTCCAGCCACAAA+AGG + Chr3:58779824-58779843 None:intergenic 55.0%
GCGCCCATTCCAGCTAGTAT+AGG + Chr3:58780137-58780156 None:intergenic 55.0%
GCTAGTGGGAGGATCACAGT+TGG - Chr3:58780992-58781011 MsG0380014710.01.T01:intron 55.0%
GCTTGGTTGCCAGGTAGTGA+AGG - Chr3:58781654-58781673 MsG0380014710.01.T01:intron 55.0%
TTGCTCCTTGTGTCGCGGTA+AGG - Chr3:58779455-58779474 MsG0380014710.01.T01:CDS 55.0%
! ATGTTGGCCTCGGAGCTACT+AGG - Chr3:58779228-58779247 MsG0380014710.01.T01:CDS 55.0%
! CCCTTTTGTGGCTGGAAGGT+AGG - Chr3:58779820-58779839 MsG0380014710.01.T01:CDS 55.0%
! CTTGGTATGGTGCTAGTGGG+AGG - Chr3:58780981-58781000 MsG0380014710.01.T01:intron 55.0%
! TCGCCCAATGACTCGGCATA+AGG + Chr3:58781489-58781508 None:intergenic 55.0%
AGCCGTCGGAGCTGAAACAC+AGG - Chr3:58781383-58781402 MsG0380014710.01.T01:intron 60.0%
GCTCCGAGGCCAACATTGTG+AGG + Chr3:58779224-58779243 None:intergenic 60.0%
! CTTGTTGCCGCTTGGTTGCC+AGG - Chr3:58781645-58781664 MsG0380014710.01.T01:intron 60.0%
TTGCAAGGTCAGCCGCCGCA+AGG - Chr3:58779782-58779801 MsG0380014710.01.T01:CDS 65.0%
!! CGCAGGTGATGGTGGCTGTC+AGG - Chr3:58780543-58780562 MsG0380014710.01.T01:intron 65.0%
TCGGTCGAGCCCCTCCCAGT+CGG + Chr3:58780377-58780396 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 58777865 58781970 58777865 ID=MsG0380014710.01;Name=MsG0380014710.01
Chr3 mRNA 58777865 58781970 58777865 ID=MsG0380014710.01.T01;Parent=MsG0380014710.01;Name=MsG0380014710.01.T01;_AED=0.45;_eAED=0.45;_QI=23|1|1|1|1|1|9|131|623
Chr3 exon 58777865 58778480 58777865 ID=MsG0380014710.01.T01:exon:11386;Parent=MsG0380014710.01.T01
Chr3 exon 58778822 58779023 58778822 ID=MsG0380014710.01.T01:exon:11385;Parent=MsG0380014710.01.T01
Chr3 exon 58779105 58779287 58779105 ID=MsG0380014710.01.T01:exon:11384;Parent=MsG0380014710.01.T01
Chr3 exon 58779370 58779474 58779370 ID=MsG0380014710.01.T01:exon:11383;Parent=MsG0380014710.01.T01
Chr3 exon 58779619 58779862 58779619 ID=MsG0380014710.01.T01:exon:11382;Parent=MsG0380014710.01.T01
Chr3 exon 58779998 58780143 58779998 ID=MsG0380014710.01.T01:exon:11381;Parent=MsG0380014710.01.T01
Chr3 exon 58780364 58780454 58780364 ID=MsG0380014710.01.T01:exon:11380;Parent=MsG0380014710.01.T01
Chr3 exon 58780586 58780790 58780586 ID=MsG0380014710.01.T01:exon:11379;Parent=MsG0380014710.01.T01
Chr3 exon 58781737 58781970 58781737 ID=MsG0380014710.01.T01:exon:11378;Parent=MsG0380014710.01.T01
Chr3 five_prime_UTR 58781948 58781970 58781948 ID=MsG0380014710.01.T01:five_prime_utr;Parent=MsG0380014710.01.T01
Chr3 CDS 58781737 58781947 58781737 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58780586 58780790 58780586 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58780364 58780454 58780364 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58779998 58780143 58779998 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58779619 58779862 58779619 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58779370 58779474 58779370 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58779105 58779287 58779105 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58778822 58779023 58778822 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 CDS 58777996 58778480 58777996 ID=MsG0380014710.01.T01:cds;Parent=MsG0380014710.01.T01
Chr3 three_prime_UTR 58777865 58777995 58777865 ID=MsG0380014710.01.T01:three_prime_utr;Parent=MsG0380014710.01.T01
Gene Sequence

>MsG0380014710.01.T01

ATGTCCTTCTTTAACTTCCTTAACTTCCCCAACCAAAGAACTCCCAAGTCCAAAGAAGCCATGGATTGCGTATACAAGAATCCCAATGAACCCATTGAAGCTCGTATCAAGGACCTTCTTTCACGCATGACTCTCAACGAGAAGATTGGTCAAATGATCCAAATTGAACGCACTGTTGCTGCCCCTTCTGTCATCAAAGACCTCTCCATTGGAAGCATACTAAGTTCTGGAGGCAGTGCTCCATTTGAGAATGCACTGTCATCTGATTGGGCTGATATGGTAGATGGGTATCAAAAATCAGCTCTAGAGTCTAGACTTGGCATACCTCTCATATATGGAATTGATGCAGTTCATGGTAATAATAGTGTCTATGGTGCTACCATATTTCCTCACAATGTTGGCCTCGGAGCTACTAGAGATGCTGATTTAGTTAGAAGAATTGGAGCTGCAACGGCGCTTGAAGTTAAAGCAAGCGGAATTCACTATAACTTTGCTCCTTGTGTCGCGGTATGCAAAGATCCTAGGTGGGGAAGATGTTATGAGTGTTATAGTGAAGACACTGAAATAGTCCGAAGGATGACTTCCATCGTTTCTGGTTTGCAAGGTCAGCCGCCGCAAGGACATAAACATGGATACCCTTTTGTGGCTGGAAGGGAAAATGTTATTGCATGTGCCAAGCATTTTGTTGGTGATGGAGGTACTCATAAGGGTGTGAATGAAGGAGATACTATATTGTCTTATGAAGACTTAGAGAGAATACACATGGCACCTTATTTAGACTGCATTTCCCAGGGAGTTTCAACTATTATGGCGTCCTATACTAGCTGGAATGGGCGCAAACTCCATGCCGACCATTTTCTTTTAACCGAAATCTTGAAAGAAAAACTAGGTTTTAAGGGTTTTGTGATTTCCGACTGGGAGGGGCTCGACCGACTTTGTAAACCTCACGGGTCAGATTATCGGTACTGCATCTCCTCTGCCGTCAATGCTGGAATTGACATGGTGATGGTGGCTGTCAGGTACAAACTATTCATCGAAGAATTGACCTCTTTAATTGAATCAGGTGAAGTGCCAATGAGCAGAATTGATGATGCTGTTGAGCGAATTTTGAGAGTAAAGTTTGCTGCTGGTCTATTTGAATTTCCATTAAGTGACAGATCTTTGCTAGATTCAGTTGGTTGCAAGCCACATAGAGATCTTGCACGGGAAGCAGTTCGAAAGTCGTTGGTTTTGTTGAAAAATGGAAAAGATATTAATGAACCTTTTCTTCCATTGAACAAGAATGCTAAGAGAATTCTTGTTACCGGAACACATGCTGATAATCTTGGATTTCAATGTGGAGGTTGGACTAAAACTTGGTATGGTGCTAGTGGGAGGATCACAGTTGGTTCAACAATCTTGGATGCTGTTAAAGCAGCCGTCGGAGCTGAAACACAGGTTATTTATGAGAAATATCCATCAGAAAACACCATAGAACGTAACGAGTTCTCATTTGCAATTGTAGCCGTTGGTGAAGCTCCTTATGCCGAGTCATTGGGCGACAATTCAGAGCTCACAATCCCTTTCTGTGGAACTGATATTATAAGCTTAGTAGCCGACAAAATCCCAACATTGGTTATTCTGATATCTGGTAGACCGTTAGTTTTAGAGCCACGGCTTTTGGTAAAGATAGATGCTCTTGTTGCCGCTTGGTTGCCAGGTAGTGAAGGAGATGGAATCACAGATGTGATCTTCGGTAGCCATGACTTCAAAGGTCAACTCCCAGTCACTTGGTTTAGAAGTGTTGAACAGCTTGATCAACCAAGTGATAGAGTTGCTGCATGTGAACCTTTGTTTCCTCTTGGTTTTGGGTTAAACTACATGAATAAGTGA
Protein sequence

>MsG0380014710.01.T01

MSFFNFLNFPNQRTPKSKEAMDCVYKNPNEPIEARIKDLLSRMTLNEKIGQMIQIERTVAAPSVIKDLSIGSILSSGGSAPFENALSSDWADMVDGYQKSALESRLGIPLIYGIDAVHGNNSVYGATIFPHNVGLGATRDADLVRRIGAATALEVKASGIHYNFAPCVAVCKDPRWGRCYECYSEDTEIVRRMTSIVSGLQGQPPQGHKHGYPFVAGRENVIACAKHFVGDGGTHKGVNEGDTILSYEDLERIHMAPYLDCISQGVSTIMASYTSWNGRKLHADHFLLTEILKEKLGFKGFVISDWEGLDRLCKPHGSDYRYCISSAVNAGIDMVMVAVRYKLFIEELTSLIESGEVPMSRIDDAVERILRVKFAAGLFEFPLSDRSLLDSVGCKPHRDLAREAVRKSLVLLKNGKDINEPFLPLNKNAKRILVTGTHADNLGFQCGGWTKTWYGASGRITVGSTILDAVKAAVGAETQVIYEKYPSENTIERNEFSFAIVAVGEAPYAESLGDNSELTIPFCGTDIISLVADKIPTLVILISGRPLVLEPRLLVKIDALVAAWLPGSEGDGITDVIFGSHDFKGQLPVTWFRSVEQLDQPSDRVAACEPLFPLGFGLNYMNK*