AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031685.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031685.01.T01 MTR_6g028120 97.701 609 14 0 20 628 1 609 0.0 1244
MsG0680031685.01.T01 MTR_6g028090 86.656 622 83 0 1 622 1 622 0.0 1139
MsG0680031685.01.T01 MTR_6g028100 83.732 627 102 0 1 627 1 627 0.0 1108
MsG0680031685.01.T01 MTR_6g028110 83.121 628 105 1 1 627 1 628 0.0 1092
MsG0680031685.01.T01 MTR_6g028110 83.121 628 105 1 1 627 1 628 0.0 1089
MsG0680031685.01.T01 MTR_3g079750 74.760 626 158 0 1 626 1 626 0.0 994
MsG0680031685.01.T01 MTR_2g030000 71.200 625 176 2 6 626 4 628 0.0 934
MsG0680031685.01.T01 MTR_7g086030 68.900 627 194 1 1 626 1 627 0.0 917
MsG0680031685.01.T01 MTR_7g086030 70.050 601 180 0 26 626 2 602 0.0 904
MsG0680031685.01.T01 MTR_3g462820 58.638 602 244 4 22 620 16 615 0.0 721
MsG0680031685.01.T01 MTR_5g069800 54.243 601 262 5 28 620 5 600 0.0 669
MsG0680031685.01.T01 MTR_5g069740 53.577 601 254 6 28 620 5 588 0.0 645
MsG0680031685.01.T01 MTR_7g086010 64.135 474 157 3 1 463 1 472 0.0 626
MsG0680031685.01.T01 MTR_3g074060 27.031 640 376 24 8 612 24 607 3.52e-45 172
MsG0680031685.01.T01 MTR_5g062650 26.786 672 362 27 14 621 36 641 9.75e-45 171
MsG0680031685.01.T01 MTR_5g062370 27.970 665 360 30 14 621 36 638 1.88e-43 167
MsG0680031685.01.T01 MTR_5g062320 27.778 666 360 31 14 621 34 636 9.73e-43 165
MsG0680031685.01.T01 MTR_7g109390 27.052 658 367 25 14 621 28 622 2.97e-41 160
MsG0680031685.01.T01 MTR_4g094285 27.217 654 343 28 13 612 38 612 9.12e-41 159
MsG0680031685.01.T01 MTR_5g062430 27.340 673 354 30 14 621 36 638 2.39e-40 157
MsG0680031685.01.T01 MTR_5g062370 27.941 612 337 27 14 584 36 584 9.60e-40 154
MsG0680031685.01.T01 MTR_2g008240 26.786 672 351 27 5 612 19 613 1.44e-38 152
MsG0680031685.01.T01 MTR_2g034720 24.928 694 355 30 11 621 11 621 1.19e-33 137
MsG0680031685.01.T01 MTR_1g106860 25.186 671 354 28 22 621 32 625 1.22e-32 134
MsG0680031685.01.T01 MTR_1g087240 25.075 670 366 24 14 621 23 618 1.85e-32 134
MsG0680031685.01.T01 MTR_5g030860 26.943 579 328 31 95 612 64 608 6.58e-30 126
MsG0680031685.01.T01 MTR_5g069850 58.333 48 20 0 554 601 4 51 1.22e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031685.01.T01 AT5G20950 72.565 616 167 2 11 626 88 701 0.0 911
MsG0680031685.01.T01 AT5G20950 72.565 616 167 2 11 626 10 623 0.0 910
MsG0680031685.01.T01 AT5G20950 72.565 616 167 2 11 626 10 623 0.0 910
MsG0680031685.01.T01 AT5G04885 64.706 629 219 2 1 627 18 645 0.0 894
MsG0680031685.01.T01 AT5G04885 64.706 629 219 2 1 627 1 628 0.0 893
MsG0680031685.01.T01 AT5G04885 64.706 629 219 2 1 627 1 628 0.0 893
MsG0680031685.01.T01 AT5G20940 71.452 599 168 2 25 623 29 624 0.0 853
MsG0680031685.01.T01 AT3G47000 56.579 608 261 3 20 625 2 608 0.0 719
MsG0680031685.01.T01 AT3G62710 56.556 633 235 10 19 622 29 650 0.0 695
MsG0680031685.01.T01 AT3G47010 55.354 607 266 4 20 622 1 606 0.0 695
MsG0680031685.01.T01 AT3G47040 55.593 599 263 3 24 620 6 603 0.0 692
MsG0680031685.01.T01 AT3G47010 55.025 607 267 5 20 622 1 605 0.0 685
MsG0680031685.01.T01 AT3G47040 53.365 624 263 4 24 620 6 628 0.0 678
MsG0680031685.01.T01 AT3G47050 54.545 605 270 4 24 626 6 607 0.0 674
MsG0680031685.01.T01 AT3G47040 51.424 632 271 7 24 620 6 636 0.0 640
MsG0680031685.01.T01 AT3G47000 57.692 442 187 0 20 461 2 443 0.0 548
MsG0680031685.01.T01 AT3G47010 56.982 444 189 1 20 461 1 444 0.0 533
MsG0680031685.01.T01 AT3G47040 56.849 438 189 0 24 461 6 443 0.0 531
MsG0680031685.01.T01 AT3G47000 56.250 432 186 3 196 625 1 431 1.58e-172 498
MsG0680031685.01.T01 AT3G47010 53.147 429 197 4 196 622 1 427 2.33e-159 464
MsG0680031685.01.T01 AT3G47050 53.887 373 172 0 24 396 6 378 3.67e-146 429
MsG0680031685.01.T01 AT5G64570 27.492 622 328 25 38 611 69 615 1.87e-38 152
MsG0680031685.01.T01 AT1G02640 27.192 673 348 29 14 621 30 625 4.96e-37 147
MsG0680031685.01.T01 AT5G09730 26.531 637 352 24 13 604 33 598 8.59e-37 147
MsG0680031685.01.T01 AT5G49360 25.633 671 360 30 13 621 34 627 4.07e-36 145
MsG0680031685.01.T01 AT3G19620 26.212 660 376 27 14 621 27 627 1.30e-35 143
MsG0680031685.01.T01 AT5G64570 27.183 607 318 25 38 598 69 597 1.77e-34 139
MsG0680031685.01.T01 AT5G10560 27.491 542 321 24 108 595 78 601 4.27e-33 135
MsG0680031685.01.T01 AT5G64570 28.421 475 278 20 162 605 8 451 9.74e-32 130
MsG0680031685.01.T01 AT5G09700 27.557 352 198 17 282 603 26 350 3.72e-11 66.2

Find 143 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTACAATGTTACAGAAAA+AGG 0.192851 6:-24637188 None:intergenic
TTACTATAACTCAATTATTA+AGG 0.195864 6:+24639216 MsG0680031685.01.T01:CDS
CTCGTTGCTGCTTGGCTTCC+TGG 0.207531 6:+24640779 MsG0680031685.01.T01:CDS
TCAAGAACAAGCTCCGTTTC+AGG 0.229398 6:+24639320 MsG0680031685.01.T01:CDS
TCACCTTCTGTTTCTGCATA+TGG 0.275946 6:-24640623 None:intergenic
TTTCCTCACAATGTTGGTTT+AGG 0.279813 6:+24638452 MsG0680031685.01.T01:CDS
TACTAGAATCAAGGATCTTA+TGG 0.281884 6:+24637814 MsG0680031685.01.T01:CDS
TTTGGTGATTATGGATTTAC+TGG 0.288249 6:+24640833 MsG0680031685.01.T01:CDS
CCTTTGTTTCCGTTTGGATT+TGG 0.300146 6:+24640926 MsG0680031685.01.T01:CDS
CTAGTATTCAATAGTTGCTT+TGG 0.309865 6:-24637797 None:intergenic
CTTGGAATTCCAATGATATA+TGG 0.311620 6:+24638383 MsG0680031685.01.T01:CDS
GATACTTCCTCTTCCTAAAA+AGG 0.311914 6:+24640055 MsG0680031685.01.T01:CDS
TTTGAGAGTCAAGTTTGTTA+TGG 0.319929 6:+24639804 MsG0680031685.01.T01:CDS
AATGAAAGTTATGTTATGAT+TGG 0.329439 6:+24641104 MsG0680031685.01.T01:three_prime_UTR
ATCAGTTACCGATGAATGTT+GGG 0.347190 6:+24640888 MsG0680031685.01.T01:CDS
CGATGAATTCTGTGTAGTTA+AGG 0.356554 6:-24639711 None:intergenic
TCTATGACTGAGTTAATTCC+AGG 0.358462 6:+24638935 MsG0680031685.01.T01:CDS
TTGAGAGTCAAGTTTGTTAT+GGG 0.359086 6:+24639805 MsG0680031685.01.T01:CDS
TATGATCCTTTGTTTCCGTT+TGG 0.359098 6:+24640920 MsG0680031685.01.T01:CDS
TATAAAATAGAACCAGAAAA+TGG 0.366862 6:-24641029 None:intergenic
TCTTACTTTCCACCAACATA+TGG 0.377690 6:-24638998 None:intergenic
GCTCTTGAAGCCAGAGCAAC+TGG 0.378631 6:+24638638 MsG0680031685.01.T01:CDS
GCAAACAGACATCAAATCTA+TGG 0.386781 6:+24639178 MsG0680031685.01.T01:CDS
GGTAGGTCACCTTGCAATCC+TGG 0.392403 6:-24638953 None:intergenic
AATTCCCTCCCAATCTGATA+TGG 0.395252 6:-24639498 None:intergenic
TACTATAACTCAATTATTAA+GGG 0.401615 6:+24639217 MsG0680031685.01.T01:CDS
TCATATGCAATTGTGGTAGT+TGG 0.403466 6:+24640593 MsG0680031685.01.T01:CDS
ACACCCTTTGACCAATTTGC+AGG 0.404300 6:-24638974 None:intergenic
GGAAGCCATGCTGATAATAT+AGG 0.406009 6:+24640098 MsG0680031685.01.T01:CDS
TTGCTTTATAGACATTGTTA+TGG 0.408828 6:-24638424 None:intergenic
TTGACAGGAGCATAGAGAAT+TGG 0.411711 6:+24639971 MsG0680031685.01.T01:intron
ATGACATTGGAAGAGAAAAT+TGG 0.411760 6:+24637842 MsG0680031685.01.T01:CDS
CCTCAACTAGTGAGGAGAAT+TGG 0.413628 6:+24638605 MsG0680031685.01.T01:CDS
ATGCAAGGCGCAAAGACATA+TGG 0.421138 6:-24638665 None:intergenic
TGTGTTGTTGTCTTAATCTC+TGG 0.425701 6:+24640713 MsG0680031685.01.T01:CDS
GGGTTTCACCATATCAGATT+GGG 0.430077 6:+24639490 MsG0680031685.01.T01:intron
ATCTCTTACTCGAGCTTGAA+TGG 0.432333 6:+24639256 MsG0680031685.01.T01:CDS
GATGAATTCTGTGTAGTTAA+GGG 0.433300 6:-24639710 None:intergenic
AAAATGCTACTGCAAAAGAA+TGG 0.434002 6:+24638315 MsG0680031685.01.T01:CDS
CCATTCCTTAACAAAATTGA+CGG 0.441784 6:+24640755 MsG0680031685.01.T01:CDS
ACTTTGTCCTTGCCATGTAA+TGG 0.443992 6:-24640141 None:intergenic
CAAGAACAAGCTCCGTTTCA+GGG 0.445615 6:+24639321 MsG0680031685.01.T01:CDS
GCATCGTCGATTCTACTCAT+AGG 0.445627 6:-24639769 None:intergenic
AAAAGGGTGCTTTATCAACT+AGG 0.448966 6:+24638360 MsG0680031685.01.T01:CDS
AGGGTTTCACCATATCAGAT+TGG 0.452221 6:+24639489 MsG0680031685.01.T01:intron
GAATTAACTCAGTCATAGAT+TGG 0.456423 6:-24638931 None:intergenic
TACAGCCTTGCCGATCAAAT+CGG 0.456658 6:+24639853 MsG0680031685.01.T01:CDS
ATATGGAATTCCAGTTGCTC+TGG 0.465625 6:-24638648 None:intergenic
GCATCAATTCCATATATCAT+TGG 0.465934 6:-24638392 None:intergenic
ATTGTTTCTATTCCATGTGC+AGG 0.474626 6:-24640665 None:intergenic
AGGAATGGTTGTATAACAAC+AGG 0.475859 6:-24640740 None:intergenic
CATCAGTTACCGATGAATGT+TGG 0.479089 6:+24640887 MsG0680031685.01.T01:CDS
CATTAATTTCAGCAATTCCA+TGG 0.479537 6:-24641085 None:intergenic
ACAGCCTTGCCGATCAAATC+GGG 0.480933 6:+24639854 MsG0680031685.01.T01:CDS
AATTGGCTAGGGAAGCTGTT+AGG 0.481660 6:+24639988 MsG0680031685.01.T01:CDS
GTCAAGACCGGCATTTATTG+AGG 0.485035 6:-24639570 None:intergenic
ATAATTGAGTTATAGTAAGC+TGG 0.486153 6:-24639211 None:intergenic
CTGGTAAGCTTGCAAGGACA+TGG 0.488067 6:+24640852 MsG0680031685.01.T01:CDS
GGTGCTTTATCAACTAGGCT+TGG 0.489170 6:+24638365 MsG0680031685.01.T01:CDS
TTGACGGACTCGTTGCTGCT+TGG 0.493350 6:+24640771 MsG0680031685.01.T01:CDS
TATGGAATTGATGCTGTTCA+TGG 0.495082 6:+24638401 MsG0680031685.01.T01:CDS
CTACCTGCAAATTGGTCAAA+GGG 0.498043 6:+24638971 MsG0680031685.01.T01:CDS
GGTGATGGTGGAACGACAAA+AGG 0.500577 6:+24639133 MsG0680031685.01.T01:CDS
GGGCCTATTTGAAAATCCAT+TGG 0.500709 6:+24639825 MsG0680031685.01.T01:CDS
GATTTACTGGTAAGCTTGCA+AGG 0.500964 6:+24640846 MsG0680031685.01.T01:CDS
TTTATCAATGAATTTCAAAA+GGG 0.501726 6:+24638344 MsG0680031685.01.T01:CDS
TCTTACAACGGAAGCTATCA+AGG 0.508782 6:+24640949 MsG0680031685.01.T01:CDS
GGAAGCTGTTAGGAAATCAT+TGG 0.510200 6:+24639998 MsG0680031685.01.T01:CDS
TGCCGATCAAATCGGGAGCC+CGG 0.511324 6:+24639861 MsG0680031685.01.T01:CDS
ACTATTGAATACTAGAATCA+AGG 0.514641 6:+24637805 MsG0680031685.01.T01:CDS
AAATGCTACTGCAAAAGAAT+GGG 0.515744 6:+24638316 MsG0680031685.01.T01:CDS
ATCGTAATTACCGCGATGCA+AGG 0.516886 6:-24638680 None:intergenic
AGCTGAGAATTTCAAATACA+AGG 0.517570 6:+24637772 MsG0680031685.01.T01:CDS
GGAAGAGAAAATTGGTCAGA+TGG 0.518843 6:+24637850 MsG0680031685.01.T01:CDS
AAGGTGACCTACCTGCAAAT+TGG 0.519029 6:+24638963 MsG0680031685.01.T01:CDS
CCAATTCTCCTCACTAGTTG+AGG 0.519046 6:-24638605 None:intergenic
GTCGATTCTACTCATAGGTA+TGG 0.521097 6:-24639764 None:intergenic
CAATTCTCCTCACTAGTTGA+GGG 0.521545 6:-24638604 None:intergenic
AATTTGACACTTCCTGCACA+TGG 0.526787 6:+24640653 MsG0680031685.01.T01:CDS
GGTAGTATTCTAAGTGGTGG+TGG 0.532475 6:+24638278 MsG0680031685.01.T01:intron
CAAGACTATGTAAAATCCAA+TGG 0.533948 6:+24640566 MsG0680031685.01.T01:CDS
TAGGAAATCAATGTGGTGGA+TGG 0.537173 6:+24640117 MsG0680031685.01.T01:CDS
TCAAAGGGTGTTCCATATGT+TGG 0.539142 6:+24638986 MsG0680031685.01.T01:CDS
TATAAAGTATTACCCTGAAA+CGG 0.540101 6:-24639333 None:intergenic
ACACCAGTACCTTCACTACC+AGG 0.540115 6:-24640797 None:intergenic
GCTAAGCACTTCGTTGGTGA+TGG 0.542383 6:+24639118 MsG0680031685.01.T01:CDS
CTTCCATTGTTTGATAACAA+TGG 0.547378 6:+24637745 MsG0680031685.01.T01:CDS
GCTAATCACGATTTAGTCAC+CGG 0.551013 6:+24639292 MsG0680031685.01.T01:CDS
CTTCCTGGTAGTGAAGGTAC+TGG 0.553695 6:+24640794 MsG0680031685.01.T01:CDS
CCTACCTGCAAATTGGTCAA+AGG 0.556080 6:+24638970 MsG0680031685.01.T01:CDS
AGGTTTGTCGAGATCCGAGA+TGG 0.557877 6:+24638867 MsG0680031685.01.T01:intron
TTTATAGGTAGTATTCTAAG+TGG 0.560644 6:+24638272 MsG0680031685.01.T01:intron
GATTTCCTATATTATCAGCA+TGG 0.560762 6:-24640103 None:intergenic
TGACGATCCCCAACATTCAT+CGG 0.561261 6:-24640896 None:intergenic
GGCTCCCGATTTGATCGGCA+AGG 0.562588 6:-24639858 None:intergenic
AGTGGCAACAACATGACTAC+TGG 0.564315 6:+24640161 MsG0680031685.01.T01:CDS
ATAGTTTACCATGTCAAGAC+CGG 0.564798 6:-24639582 None:intergenic
GCTTGGCTTCCTGGTAGTGA+AGG 0.566242 6:+24640788 MsG0680031685.01.T01:CDS
CCTTTGACCAATTTGCAGGT+AGG 0.569213 6:-24638970 None:intergenic
ATAGGTAGTATTCTAAGTGG+TGG 0.570533 6:+24638275 MsG0680031685.01.T01:intron
TCTTATGGACAGAATGACAT+TGG 0.573798 6:+24637829 MsG0680031685.01.T01:CDS
CTGCCATTGTTATCAAACAA+TGG 0.574948 6:-24637748 None:intergenic
GAGTTAATTCCAGGATTGCA+AGG 0.580785 6:+24638944 MsG0680031685.01.T01:CDS
CAGATTGGGAGGGAATTGAC+AGG 0.582056 6:+24639504 MsG0680031685.01.T01:CDS
TTGCTCTTTGTATTCTACCA+CGG 0.586136 6:-24640537 None:intergenic
AAGGGTGTTCCATATGTTGG+TGG 0.586153 6:+24638989 MsG0680031685.01.T01:CDS
GAGCTTGTTCTTGAGAAAGC+CGG 0.587168 6:-24639311 None:intergenic
ATGAATTCTGTGTAGTTAAG+GGG 0.590227 6:-24639709 None:intergenic
TCATAACATCTACCCCATCT+CGG 0.590442 6:-24638881 None:intergenic
GCTTGTGCTAAGCACTTCGT+TGG 0.592228 6:+24639112 MsG0680031685.01.T01:CDS
GGTTTGTCGAGATCCGAGAT+GGG 0.596238 6:+24638868 MsG0680031685.01.T01:intron
ATTGAAGCCTCAATAAATGC+CGG 0.596884 6:+24639563 MsG0680031685.01.T01:CDS
AACCGGGCTCCCGATTTGAT+CGG 0.596991 6:-24639863 None:intergenic
AAGCACTTCGTTGGTGATGG+TGG 0.597099 6:+24639121 MsG0680031685.01.T01:CDS
CCAAATCCAAACGGAAACAA+AGG 0.599007 6:-24640926 None:intergenic
TTTCACCATATCAGATTGGG+AGG 0.600221 6:+24639493 MsG0680031685.01.T01:CDS
GTTGTAAGACCAAATCCAAA+CGG 0.601185 6:-24640935 None:intergenic
AGGAGCATAGAGAATTGGCT+AGG 0.609615 6:+24639976 MsG0680031685.01.T01:intron
AATAAATGCCGGTCTTGACA+TGG 0.610437 6:+24639574 MsG0680031685.01.T01:CDS
GTGGTGGATGGACCATTACA+TGG 0.610813 6:+24640129 MsG0680031685.01.T01:CDS
GGATGGACCATTACATGGCA+AGG 0.613886 6:+24640134 MsG0680031685.01.T01:CDS
GTGTTGTCATATATGTACCA+TGG 0.616201 6:+24641068 MsG0680031685.01.T01:three_prime_UTR
GGTAAATGAATACAAAAGAA+CGG 0.617021 6:-24641008 None:intergenic
AATATAGGAAATCAATGTGG+TGG 0.622089 6:+24640113 MsG0680031685.01.T01:CDS
GCTCCTAAACCAACATTGTG+AGG 0.622167 6:-24638455 None:intergenic
AGACCATATGCAGAAACAGA+AGG 0.626561 6:+24640620 MsG0680031685.01.T01:CDS
GCAAGGCTGTAATCAGCCAA+TGG 0.627329 6:-24639841 None:intergenic
ATGTTGGTTTAGGAGCTACA+AGG 0.629390 6:+24638462 MsG0680031685.01.T01:CDS
GGAGCATAGAGAATTGGCTA+GGG 0.629421 6:+24639977 MsG0680031685.01.T01:intron
AACTACACAGAATTCATCGA+TGG 0.630184 6:+24639715 MsG0680031685.01.T01:CDS
GAATATGTGTAGTTAGCATG+AGG 0.642632 6:-24639539 None:intergenic
ATTACATGGCAAGGACAAAG+TGG 0.645814 6:+24640143 MsG0680031685.01.T01:CDS
CACAGTTGACAAAGAAACCG+TGG 0.649371 6:+24640520 MsG0680031685.01.T01:CDS
TGTCTTTGCGCCTTGCATCG+CGG 0.650545 6:+24638670 MsG0680031685.01.T01:CDS
TTCACCATATCAGATTGGGA+GGG 0.662649 6:+24639494 MsG0680031685.01.T01:CDS
GCAGGGACCCTCAACTAGTG+AGG 0.668299 6:+24638597 MsG0680031685.01.T01:intron
TCATTGGTACTATTGAAGAA+CGG 0.673919 6:+24640014 MsG0680031685.01.T01:CDS
GTTTGGATTTGGTCTTACAA+CGG 0.675425 6:+24640937 MsG0680031685.01.T01:CDS
TCAGTTACCGATGAATGTTG+GGG 0.681061 6:+24640889 MsG0680031685.01.T01:CDS
GTTTGTCGAGATCCGAGATG+GGG 0.683858 6:+24638869 MsG0680031685.01.T01:CDS
TATGTGTAGTTAGCATGAGG+AGG 0.702766 6:-24639536 None:intergenic
GCTCGAGTAAGAGATCATGA+CGG 0.753304 6:-24639248 None:intergenic
GATAATATAGGAAATCAATG+TGG 0.788123 6:+24640110 MsG0680031685.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATGTAACAAAAAAA+TGG - Chr6:24637236-24637255 None:intergenic 10.0%
!!! ATATTTTTGTTTGTTTTTAT+AGG + Chr6:24638257-24638276 MsG0680031685.01.T01:intron 10.0%
!!! TTAATAAACTTTTAATCTAA+CGG + Chr6:24637340-24637359 MsG0680031685.01.T01:intron 10.0%
!!! TTTTTACATTTATAAAAGTT+TGG + Chr6:24638529-24638548 MsG0680031685.01.T01:intron 10.0%
!! ACTTATTTAAACATACTTTA+AGG - Chr6:24640276-24640295 None:intergenic 15.0%
!! GTGATGAAAAAATATTATAT+AGG + Chr6:24637905-24637924 MsG0680031685.01.T01:CDS 15.0%
!! TACTATAACTCAATTATTAA+GGG + Chr6:24639217-24639236 MsG0680031685.01.T01:CDS 15.0%
!! TTACTATAACTCAATTATTA+AGG + Chr6:24639216-24639235 MsG0680031685.01.T01:CDS 15.0%
!! TTTATCAATGAATTTCAAAA+GGG + Chr6:24638344-24638363 MsG0680031685.01.T01:CDS 15.0%
!!! AAAATTCTTTGTTTTCTTTT+AGG + Chr6:24639469-24639488 MsG0680031685.01.T01:intron 15.0%
!!! AAATTCTTTGTTTTCTTTTA+GGG + Chr6:24639470-24639489 MsG0680031685.01.T01:intron 15.0%
!!! ACATATGTTTTTGTATATAT+AGG + Chr6:24638847-24638866 MsG0680031685.01.T01:intron 15.0%
!!! ACGATATAAATAAATTTTGT+AGG - Chr6:24639924-24639943 None:intergenic 15.0%
!!! CGATATAAATAAATTTTGTA+GGG - Chr6:24639923-24639942 None:intergenic 15.0%
!!! GACAACATTTTAAAAAAAAA+TGG + Chr6:24637963-24637982 MsG0680031685.01.T01:intron 15.0%
!!! TAAGGTTTTTTTTTTTTTGT+TGG + Chr6:24637542-24637561 MsG0680031685.01.T01:intron 15.0%
!!! TTTTATCAATGAATTTCAAA+AGG + Chr6:24638343-24638362 MsG0680031685.01.T01:CDS 15.0%
!! ATCGTAATGATAAACTAAAT+TGG + Chr6:24639939-24639958 MsG0680031685.01.T01:intron 20.0%
!! ATGAGATCATAACAAAATTT+AGG - Chr6:24637662-24637681 None:intergenic 20.0%
!! ATTAATTCTCTGCAATATTA+AGG + Chr6:24638082-24638101 MsG0680031685.01.T01:intron 20.0%
!! ATTCATGAATATGAAAACAA+AGG - Chr6:24639366-24639385 None:intergenic 20.0%
!! CTTAAATGATATTGATATAC+AGG + Chr6:24640470-24640489 MsG0680031685.01.T01:intron 20.0%
!! TATAAAATAGAACCAGAAAA+TGG - Chr6:24641032-24641051 None:intergenic 20.0%
!! TATAATACTTATCCTTGTTA+TGG + Chr6:24639672-24639691 MsG0680031685.01.T01:intron 20.0%
!! TTCATGACTAAAATTGAAAT+TGG + Chr6:24637448-24637467 MsG0680031685.01.T01:intron 20.0%
!!! AAAATGTTCAATATTTTTGG+TGG + Chr6:24637712-24637731 MsG0680031685.01.T01:CDS 20.0%
!!! AAATGTTCAATATTTTTGGT+GGG + Chr6:24637713-24637732 MsG0680031685.01.T01:CDS 20.0%
!!! AGATCTAAGTTTTTGTTTAT+TGG + Chr6:24637414-24637433 MsG0680031685.01.T01:intron 20.0%
!!! TATGATGTTTTTAAGGTTTT+TGG + Chr6:24637503-24637522 MsG0680031685.01.T01:intron 20.0%
!!! TGTATACTATGATGTTTTTA+AGG + Chr6:24637496-24637515 MsG0680031685.01.T01:intron 20.0%
! AACAAAAACTTAGATCTTCA+CGG - Chr6:24637411-24637430 None:intergenic 25.0%
! AATTGCATATGAAAAACCAT+TGG - Chr6:24640585-24640604 None:intergenic 25.0%
! ACTATTGAATACTAGAATCA+AGG + Chr6:24637805-24637824 MsG0680031685.01.T01:CDS 25.0%
! ATAATTGAGTTATAGTAAGC+TGG - Chr6:24639214-24639233 None:intergenic 25.0%
! ATACAAAAACATATGTCACA+AGG - Chr6:24638843-24638862 None:intergenic 25.0%
! ATCCGGTTTAAAAGTAAAAT+CGG + Chr6:24637372-24637391 MsG0680031685.01.T01:intron 25.0%
! CCTAAAATACAATGTTAACA+TGG + Chr6:24640447-24640466 MsG0680031685.01.T01:intron 25.0%
! CTATCAATAAGAATCGAATT+TGG + Chr6:24639637-24639656 MsG0680031685.01.T01:intron 25.0%
! GAAACAATCAAAAATGTATG+CGG + Chr6:24640680-24640699 MsG0680031685.01.T01:CDS 25.0%
! GATAATATAGGAAATCAATG+TGG + Chr6:24640110-24640129 MsG0680031685.01.T01:CDS 25.0%
! GATCTAATTAAGAATACACA+TGG - Chr6:24637568-24637587 None:intergenic 25.0%
! GATTCTTATTGATAGAAAAG+AGG - Chr6:24639632-24639651 None:intergenic 25.0%
! GGTAAATGAATACAAAAGAA+CGG - Chr6:24641011-24641030 None:intergenic 25.0%
! TATTCCTAAATCACACTATT+TGG - Chr6:24638228-24638247 None:intergenic 25.0%
! TCTACAATGTTACAGAAAAA+GGG - Chr6:24637190-24637209 None:intergenic 25.0%
! TGAACAATATTGTCAAATAG+TGG - Chr6:24638819-24638838 None:intergenic 25.0%
! TTGCTTTATAGACATTGTTA+TGG - Chr6:24638427-24638446 None:intergenic 25.0%
! TTTATAGGTAGTATTCTAAG+TGG + Chr6:24638272-24638291 MsG0680031685.01.T01:intron 25.0%
!! CCATGTTAACATTGTATTTT+AGG - Chr6:24640450-24640469 None:intergenic 25.0%
!! GCAATTTTTCCTTGAATTTT+TGG - Chr6:24640245-24640264 None:intergenic 25.0%
!! GGCAAAATGTTCAATATTTT+TGG + Chr6:24637709-24637728 MsG0680031685.01.T01:CDS 25.0%
!! TATAAAGTATTACCCTGAAA+CGG - Chr6:24639336-24639355 None:intergenic 25.0%
!! TGTATTCATTTACCATTTTC+TGG + Chr6:24641017-24641036 MsG0680031685.01.T01:three_prime_UTR 25.0%
!!! AATGTTCAATATTTTTGGTG+GGG + Chr6:24637714-24637733 MsG0680031685.01.T01:CDS 25.0%
!!! ATCCGATTTTACTTTTAAAC+CGG - Chr6:24637377-24637396 None:intergenic 25.0%
AAAATGCTACTGCAAAAGAA+TGG + Chr6:24638315-24638334 MsG0680031685.01.T01:CDS 30.0%
AAACTATGATTCTTGCAAGT+CGG + Chr6:24639598-24639617 MsG0680031685.01.T01:intron 30.0%
AAATGCTACTGCAAAAGAAT+GGG + Chr6:24638316-24638335 MsG0680031685.01.T01:CDS 30.0%
AATATAGGAAATCAATGTGG+TGG + Chr6:24640113-24640132 MsG0680031685.01.T01:CDS 30.0%
AATTGGAACCATAATTTGAC+AGG + Chr6:24639956-24639975 MsG0680031685.01.T01:intron 30.0%
AATTTAAACTGCGACATCAA+AGG + Chr6:24637998-24638017 MsG0680031685.01.T01:intron 30.0%
ACTTGAACCAAGATAAAACT+AGG - Chr6:24640368-24640387 None:intergenic 30.0%
AGCTGAGAATTTCAAATACA+AGG + Chr6:24637772-24637791 MsG0680031685.01.T01:CDS 30.0%
ATGAATTCTGTGTAGTTAAG+GGG - Chr6:24639712-24639731 None:intergenic 30.0%
ATGACATTGGAAGAGAAAAT+TGG + Chr6:24637842-24637861 MsG0680031685.01.T01:CDS 30.0%
ATTGTATCTATGAACTTGCA+GGG + Chr6:24638580-24638599 MsG0680031685.01.T01:intron 30.0%
CAAGACTATGTAAAATCCAA+TGG + Chr6:24640566-24640585 MsG0680031685.01.T01:CDS 30.0%
CATTAATTTCAGCAATTCCA+TGG - Chr6:24641088-24641107 None:intergenic 30.0%
CCATTCCTTAACAAAATTGA+CGG + Chr6:24640755-24640774 MsG0680031685.01.T01:CDS 30.0%
CTAGTATTCAATAGTTGCTT+TGG - Chr6:24637800-24637819 None:intergenic 30.0%
CTCTACAATGTTACAGAAAA+AGG - Chr6:24637191-24637210 None:intergenic 30.0%
CTTGGAATTCCAATGATATA+TGG + Chr6:24638383-24638402 MsG0680031685.01.T01:CDS 30.0%
GAATTAACTCAGTCATAGAT+TGG - Chr6:24638934-24638953 None:intergenic 30.0%
GATGAATTCTGTGTAGTTAA+GGG - Chr6:24639713-24639732 None:intergenic 30.0%
GATTTCCTATATTATCAGCA+TGG - Chr6:24640106-24640125 None:intergenic 30.0%
GCATCAATTCCATATATCAT+TGG - Chr6:24638395-24638414 None:intergenic 30.0%
TACTAGAATCAAGGATCTTA+TGG + Chr6:24637814-24637833 MsG0680031685.01.T01:CDS 30.0%
TATCTTGCACCAAAAATTCA+AGG + Chr6:24640233-24640252 MsG0680031685.01.T01:intron 30.0%
TATGCCAAATAGTGTGATTT+AGG + Chr6:24638221-24638240 MsG0680031685.01.T01:intron 30.0%
TATTGTATCTATGAACTTGC+AGG + Chr6:24638579-24638598 MsG0680031685.01.T01:intron 30.0%
TCATTGGTACTATTGAAGAA+CGG + Chr6:24640014-24640033 MsG0680031685.01.T01:CDS 30.0%
TCGAAAAAACAAAGTTGAGA+AGG - Chr6:24640200-24640219 None:intergenic 30.0%
TGAAATGAATCATCAACGAT+CGG + Chr6:24637292-24637311 MsG0680031685.01.T01:intron 30.0%
TTGGTTCAAGTGGTTTAAAA+CGG + Chr6:24640377-24640396 MsG0680031685.01.T01:intron 30.0%
TTGTTATGATCTCATTGTGA+AGG + Chr6:24637667-24637686 MsG0680031685.01.T01:intron 30.0%
! CTTCCATTGTTTGATAACAA+TGG + Chr6:24637745-24637764 MsG0680031685.01.T01:CDS 30.0%
! TATGCATGTTTTCGTAATGT+CGG + Chr6:24639047-24639066 MsG0680031685.01.T01:intron 30.0%
! TGGTTTTTCATATGCAATTG+TGG + Chr6:24640586-24640605 MsG0680031685.01.T01:CDS 30.0%
! TTTGGTGATTATGGATTTAC+TGG + Chr6:24640833-24640852 MsG0680031685.01.T01:CDS 30.0%
!! GATTTTACATAGTCTTGAGA+AGG - Chr6:24640563-24640582 None:intergenic 30.0%
!! GATTTTACTTTTAAACCGGA+TGG - Chr6:24637373-24637392 None:intergenic 30.0%
!! TTGAGAGTCAAGTTTGTTAT+GGG + Chr6:24639805-24639824 MsG0680031685.01.T01:CDS 30.0%
!! TTTGAGAGTCAAGTTTGTTA+TGG + Chr6:24639804-24639823 MsG0680031685.01.T01:CDS 30.0%
!! TTTTTAGGAAGAGGAAGTAT+CGG - Chr6:24640056-24640075 None:intergenic 30.0%
!!! AGTATTTTTGGAGCCTTTTT+AGG - Chr6:24640071-24640090 None:intergenic 30.0%
!!! GATGTTTTGTTTGGTGATTA+TGG + Chr6:24640824-24640843 MsG0680031685.01.T01:CDS 30.0%
!!! GTTCAATCCTAGTTTTATCT+TGG + Chr6:24640358-24640377 MsG0680031685.01.T01:intron 30.0%
!!! TAGTTTTATCTTGGTTCAAG+TGG + Chr6:24640367-24640386 MsG0680031685.01.T01:intron 30.0%
AAACGTGATGTCAATTGATG+TGG + Chr6:24638042-24638061 MsG0680031685.01.T01:intron 35.0%
AACTACACAGAATTCATCGA+TGG + Chr6:24639715-24639734 MsG0680031685.01.T01:CDS 35.0%
ACAAATCGCTATTGTTCTAC+AGG - Chr6:24638756-24638775 None:intergenic 35.0%
ACCAACATTGTGAGGAAAAA+TGG - Chr6:24638450-24638469 None:intergenic 35.0%
ACCATTCATCAATAGATGCA+TGG - Chr6:24637474-24637493 None:intergenic 35.0%
ACTGAACTGAACAGTTTAAC+TGG + Chr6:24640305-24640324 MsG0680031685.01.T01:intron 35.0%
AGGAATGGTTGTATAACAAC+AGG - Chr6:24640743-24640762 None:intergenic 35.0%
ATAGGTAGTATTCTAAGTGG+TGG + Chr6:24638275-24638294 MsG0680031685.01.T01:intron 35.0%
ATAGTTTACCATGTCAAGAC+CGG - Chr6:24639585-24639604 None:intergenic 35.0%
ATCAGTTACCGATGAATGTT+GGG + Chr6:24640888-24640907 MsG0680031685.01.T01:CDS 35.0%
ATGCACTGTCTTTGTAAAAG+AGG + Chr6:24639410-24639429 MsG0680031685.01.T01:intron 35.0%
ATTGAAGCCTCAATAAATGC+CGG + Chr6:24639563-24639582 MsG0680031685.01.T01:CDS 35.0%
CGATGAATTCTGTGTAGTTA+AGG - Chr6:24639714-24639733 None:intergenic 35.0%
CTGCCATTGTTATCAAACAA+TGG - Chr6:24637751-24637770 None:intergenic 35.0%
GAATATGTGTAGTTAGCATG+AGG - Chr6:24639542-24639561 None:intergenic 35.0%
GATACTTCCTCTTCCTAAAA+AGG + Chr6:24640055-24640074 MsG0680031685.01.T01:CDS 35.0%
GCAAACAGACATCAAATCTA+TGG + Chr6:24639178-24639197 MsG0680031685.01.T01:CDS 35.0%
GGCTTCATTCATGCATAATA+AGG + Chr6:24637524-24637543 MsG0680031685.01.T01:intron 35.0%
GTGTTGTCATATATGTACCA+TGG + Chr6:24641068-24641087 MsG0680031685.01.T01:three_prime_UTR 35.0%
GTTGTAAGACCAAATCCAAA+CGG - Chr6:24640938-24640957 None:intergenic 35.0%
TATGGAATTGATGCTGTTCA+TGG + Chr6:24638401-24638420 MsG0680031685.01.T01:CDS 35.0%
TCATATGCAATTGTGGTAGT+TGG + Chr6:24640593-24640612 MsG0680031685.01.T01:CDS 35.0%
TCTATGACTGAGTTAATTCC+AGG + Chr6:24638935-24638954 MsG0680031685.01.T01:CDS 35.0%
TCTATGCTCCTGTCAAATTA+TGG - Chr6:24639967-24639986 None:intergenic 35.0%
TCTTACTTTCCACCAACATA+TGG - Chr6:24639001-24639020 None:intergenic 35.0%
TCTTATGGACAGAATGACAT+TGG + Chr6:24637829-24637848 MsG0680031685.01.T01:CDS 35.0%
TGTAGAGCCACAAAAAAGTT+TGG + Chr6:24637204-24637223 MsG0680031685.01.T01:five_prime_UTR 35.0%
TTGCTCTTTGTATTCTACCA+CGG - Chr6:24640540-24640559 None:intergenic 35.0%
TTGTAGATCGCAGAAAATAG+TGG - Chr6:24640408-24640427 None:intergenic 35.0%
TTGTCAAATAGTGGCTATAG+CGG - Chr6:24638810-24638829 None:intergenic 35.0%
! CCGTCAATTTTGTTAAGGAA+TGG - Chr6:24640758-24640777 None:intergenic 35.0%
! CTTCCAGCAACAAGTATTTT+TGG - Chr6:24640083-24640102 None:intergenic 35.0%
! TATGATCCTTTGTTTCCGTT+TGG + Chr6:24640920-24640939 MsG0680031685.01.T01:CDS 35.0%
! TGTGTTGTTGTCTTAATCTC+TGG + Chr6:24640713-24640732 MsG0680031685.01.T01:CDS 35.0%
! TTTGCAGTAGCATTTTGCTT+AGG - Chr6:24638311-24638330 None:intergenic 35.0%
!! AAAAGGGTGCTTTATCAACT+AGG + Chr6:24638360-24638379 MsG0680031685.01.T01:CDS 35.0%
!! ACCATTTTTCCTCACAATGT+TGG + Chr6:24638446-24638465 MsG0680031685.01.T01:CDS 35.0%
!! ATTGTTTCTATTCCATGTGC+AGG - Chr6:24640668-24640687 None:intergenic 35.0%
!! CAGCCAATGGATTTTCAAAT+AGG - Chr6:24639831-24639850 None:intergenic 35.0%
!! GTTTGGATTTGGTCTTACAA+CGG + Chr6:24640937-24640956 MsG0680031685.01.T01:CDS 35.0%
!! TCTTTTTCACTAGTGAGGTT+AGG - Chr6:24639741-24639760 None:intergenic 35.0%
!! TTTCCTCACAATGTTGGTTT+AGG + Chr6:24638452-24638471 MsG0680031685.01.T01:CDS 35.0%
!!! GTGCATACCAAACTTTTTTG+TGG - Chr6:24637214-24637233 None:intergenic 35.0%
AATAAATGCCGGTCTTGACA+TGG + Chr6:24639574-24639593 MsG0680031685.01.T01:CDS 40.0%
AATTCCCTCCCAATCTGATA+TGG - Chr6:24639501-24639520 None:intergenic 40.0%
AATTTGACACTTCCTGCACA+TGG + Chr6:24640653-24640672 MsG0680031685.01.T01:CDS 40.0%
ACTTTGTCCTTGCCATGTAA+TGG - Chr6:24640144-24640163 None:intergenic 40.0%
AGACCATATGCAGAAACAGA+AGG + Chr6:24640620-24640639 MsG0680031685.01.T01:CDS 40.0%
AGGGTTTCACCATATCAGAT+TGG + Chr6:24639489-24639508 MsG0680031685.01.T01:intron 40.0%
ATATGGAATTCCAGTTGCTC+TGG - Chr6:24638651-24638670 None:intergenic 40.0%
ATCTCTTACTCGAGCTTGAA+TGG + Chr6:24639256-24639275 MsG0680031685.01.T01:CDS 40.0%
ATTACATGGCAAGGACAAAG+TGG + Chr6:24640143-24640162 MsG0680031685.01.T01:CDS 40.0%
CAATTCTCCTCACTAGTTGA+GGG - Chr6:24638607-24638626 None:intergenic 40.0%
CATCAGTTACCGATGAATGT+TGG + Chr6:24640887-24640906 MsG0680031685.01.T01:CDS 40.0%
CCAAATCCAAACGGAAACAA+AGG - Chr6:24640929-24640948 None:intergenic 40.0%
CCATTATCTGCACCATAACA+AGG - Chr6:24639687-24639706 None:intergenic 40.0%
CCTTGAATCAGCCTTAACTA+CGG + Chr6:24640333-24640352 MsG0680031685.01.T01:intron 40.0%
CTACCTGCAAATTGGTCAAA+GGG + Chr6:24638971-24638990 MsG0680031685.01.T01:CDS 40.0%
GAGTTAATTCCAGGATTGCA+AGG + Chr6:24638944-24638963 MsG0680031685.01.T01:CDS 40.0%
GATTTACTGGTAAGCTTGCA+AGG + Chr6:24640846-24640865 MsG0680031685.01.T01:CDS 40.0%
GCCATGCATCTATTGATGAA+TGG + Chr6:24637470-24637489 MsG0680031685.01.T01:intron 40.0%
GCGATCTACAATTGACAACT+AGG + Chr6:24640417-24640436 MsG0680031685.01.T01:intron 40.0%
GCTAATCACGATTTAGTCAC+CGG + Chr6:24639292-24639311 MsG0680031685.01.T01:CDS 40.0%
GGAAGAGAAAATTGGTCAGA+TGG + Chr6:24637850-24637869 MsG0680031685.01.T01:CDS 40.0%
GGAAGCCATGCTGATAATAT+AGG + Chr6:24640098-24640117 MsG0680031685.01.T01:CDS 40.0%
GGAAGCTGTTAGGAAATCAT+TGG + Chr6:24639998-24640017 MsG0680031685.01.T01:CDS 40.0%
GGGCCTATTTGAAAATCCAT+TGG + Chr6:24639825-24639844 MsG0680031685.01.T01:CDS 40.0%
GGGTTTCACCATATCAGATT+GGG + Chr6:24639490-24639509 MsG0680031685.01.T01:intron 40.0%
TATGTGTAGTTAGCATGAGG+AGG - Chr6:24639539-24639558 None:intergenic 40.0%
TCAGTTACCGATGAATGTTG+GGG + Chr6:24640889-24640908 MsG0680031685.01.T01:CDS 40.0%
TCATAACATCTACCCCATCT+CGG - Chr6:24638884-24638903 None:intergenic 40.0%
TCTTACAACGGAAGCTATCA+AGG + Chr6:24640949-24640968 MsG0680031685.01.T01:CDS 40.0%
TTCACCATATCAGATTGGGA+GGG + Chr6:24639494-24639513 MsG0680031685.01.T01:CDS 40.0%
TTGACATCACGTTTCAGATG+CGG - Chr6:24638036-24638055 None:intergenic 40.0%
TTTCACCATATCAGATTGGG+AGG + Chr6:24639493-24639512 MsG0680031685.01.T01:CDS 40.0%
! ATCATCAACGATCGGCTTTA+TGG + Chr6:24637300-24637319 MsG0680031685.01.T01:intron 40.0%
! CCTTGTTATGGTGCAGATAA+TGG + Chr6:24639684-24639703 MsG0680031685.01.T01:intron 40.0%
! CCTTTGTTTCCGTTTGGATT+TGG + Chr6:24640926-24640945 MsG0680031685.01.T01:CDS 40.0%
! CGAGTCCGTCAATTTTGTTA+AGG - Chr6:24640763-24640782 None:intergenic 40.0%
! GATCGGCTTTATGGTATTAC+AGG + Chr6:24637309-24637328 MsG0680031685.01.T01:intron 40.0%
! GCTCCAAAAATACTTGTTGC+TGG + Chr6:24640077-24640096 MsG0680031685.01.T01:CDS 40.0%
! GTCGATTCTACTCATAGGTA+TGG - Chr6:24639767-24639786 None:intergenic 40.0%
! TAGGAAATCAATGTGGTGGA+TGG + Chr6:24640117-24640136 MsG0680031685.01.T01:CDS 40.0%
! TTGACAGGAGCATAGAGAAT+TGG + Chr6:24639971-24639990 MsG0680031685.01.T01:intron 40.0%
!! ATGTTGGTTTAGGAGCTACA+AGG + Chr6:24638462-24638481 MsG0680031685.01.T01:CDS 40.0%
!! GGCATTCTTTTTCACTAGTG+AGG - Chr6:24639746-24639765 None:intergenic 40.0%
!! TCAAAGGGTGTTCCATATGT+TGG + Chr6:24638986-24639005 MsG0680031685.01.T01:CDS 40.0%
!! TCACCTTCTGTTTCTGCATA+TGG - Chr6:24640626-24640645 None:intergenic 40.0%
!! TTTGGAGCCTTTTTAGGAAG+AGG - Chr6:24640065-24640084 None:intergenic 40.0%
!!! CATTGTGAAGGTGTTTTGAG+AGG + Chr6:24637679-24637698 MsG0680031685.01.T01:intron 40.0%
!!! GGTGTTGCTGATGTTTTGTT+TGG + Chr6:24640815-24640834 MsG0680031685.01.T01:CDS 40.0%
!!! GGTGTTTTGAGAGGAAGAAA+TGG + Chr6:24637688-24637707 MsG0680031685.01.T01:intron 40.0%
AAGGTGACCTACCTGCAAAT+TGG + Chr6:24638963-24638982 MsG0680031685.01.T01:CDS 45.0%
AATTGGCTAGGGAAGCTGTT+AGG + Chr6:24639988-24640007 MsG0680031685.01.T01:CDS 45.0%
ACACCCTTTGACCAATTTGC+AGG - Chr6:24638977-24638996 None:intergenic 45.0%
AGTGGCAACAACATGACTAC+TGG + Chr6:24640161-24640180 MsG0680031685.01.T01:CDS 45.0%
ATCGTAATTACCGCGATGCA+AGG - Chr6:24638683-24638702 None:intergenic 45.0%
ATGCAAGGCGCAAAGACATA+TGG - Chr6:24638668-24638687 None:intergenic 45.0%
CAAGAACAAGCTCCGTTTCA+GGG + Chr6:24639321-24639340 MsG0680031685.01.T01:CDS 45.0%
CACAGTTGACAAAGAAACCG+TGG + Chr6:24640520-24640539 MsG0680031685.01.T01:CDS 45.0%
CCAATTCTCCTCACTAGTTG+AGG - Chr6:24638608-24638627 None:intergenic 45.0%
CCTACCTGCAAATTGGTCAA+AGG + Chr6:24638970-24638989 MsG0680031685.01.T01:CDS 45.0%
CCTCAACTAGTGAGGAGAAT+TGG + Chr6:24638605-24638624 MsG0680031685.01.T01:CDS 45.0%
CCTTTGACCAATTTGCAGGT+AGG - Chr6:24638973-24638992 None:intergenic 45.0%
GCTCCTAAACCAACATTGTG+AGG - Chr6:24638458-24638477 None:intergenic 45.0%
GCTCGAGTAAGAGATCATGA+CGG - Chr6:24639251-24639270 None:intergenic 45.0%
GGAGCATAGAGAATTGGCTA+GGG + Chr6:24639977-24639996 MsG0680031685.01.T01:intron 45.0%
GGATTGAACCACCGTAGTTA+AGG - Chr6:24640347-24640366 None:intergenic 45.0%
GGTAGTATTCTAAGTGGTGG+TGG + Chr6:24638278-24638297 MsG0680031685.01.T01:intron 45.0%
GGTGCTTTATCAACTAGGCT+TGG + Chr6:24638365-24638384 MsG0680031685.01.T01:CDS 45.0%
GTCAAGACCGGCATTTATTG+AGG - Chr6:24639573-24639592 None:intergenic 45.0%
TACAGCCTTGCCGATCAAAT+CGG + Chr6:24639853-24639872 MsG0680031685.01.T01:CDS 45.0%
TCAAGAACAAGCTCCGTTTC+AGG + Chr6:24639320-24639339 MsG0680031685.01.T01:CDS 45.0%
TGAATCAGCCTTAACTACGG+TGG + Chr6:24640336-24640355 MsG0680031685.01.T01:intron 45.0%
TGACGATCCCCAACATTCAT+CGG - Chr6:24640899-24640918 None:intergenic 45.0%
! AGGAGCATAGAGAATTGGCT+AGG + Chr6:24639976-24639995 MsG0680031685.01.T01:intron 45.0%
! CCGTAGTTAAGGCTGATTCA+AGG - Chr6:24640336-24640355 None:intergenic 45.0%
! GAGCTTGTTCTTGAGAAAGC+CGG - Chr6:24639314-24639333 None:intergenic 45.0%
! TGCAACTTTCTTGCTGTGCA+AGG - Chr6:24639092-24639111 None:intergenic 45.0%
!! AAGGGTGTTCCATATGTTGG+TGG + Chr6:24638989-24639008 MsG0680031685.01.T01:CDS 45.0%
!! GCATCGTCGATTCTACTCAT+AGG - Chr6:24639772-24639791 None:intergenic 45.0%
ACACCAGTACCTTCACTACC+AGG - Chr6:24640800-24640819 None:intergenic 50.0%
ACAGCCTTGCCGATCAAATC+GGG + Chr6:24639854-24639873 MsG0680031685.01.T01:CDS 50.0%
AGGTTTGTCGAGATCCGAGA+TGG + Chr6:24638867-24638886 MsG0680031685.01.T01:intron 50.0%
CAGATTGGGAGGGAATTGAC+AGG + Chr6:24639504-24639523 MsG0680031685.01.T01:CDS 50.0%
CTCTGAGCTGATCGACTAAC+CGG - Chr6:24639883-24639902 None:intergenic 50.0%
CTGGTAAGCTTGCAAGGACA+TGG + Chr6:24640852-24640871 MsG0680031685.01.T01:CDS 50.0%
GCAAGGCTGTAATCAGCCAA+TGG - Chr6:24639844-24639863 None:intergenic 50.0%
GCTTGTGCTAAGCACTTCGT+TGG + Chr6:24639112-24639131 MsG0680031685.01.T01:CDS 50.0%
GGATGGACCATTACATGGCA+AGG + Chr6:24640134-24640153 MsG0680031685.01.T01:CDS 50.0%
GGTTTGTCGAGATCCGAGAT+GGG + Chr6:24638868-24638887 MsG0680031685.01.T01:intron 50.0%
GTTTGTCGAGATCCGAGATG+GGG + Chr6:24638869-24638888 MsG0680031685.01.T01:CDS 50.0%
TCTAACGGCTTGCATCCATC+CGG + Chr6:24637355-24637374 MsG0680031685.01.T01:intron 50.0%
TCTGAGCTGATCGACTAACC+GGG - Chr6:24639882-24639901 None:intergenic 50.0%
! CTTCCTGGTAGTGAAGGTAC+TGG + Chr6:24640794-24640813 MsG0680031685.01.T01:CDS 50.0%
! GCTAAGCACTTCGTTGGTGA+TGG + Chr6:24639118-24639137 MsG0680031685.01.T01:CDS 50.0%
!! AAGCACTTCGTTGGTGATGG+TGG + Chr6:24639121-24639140 MsG0680031685.01.T01:CDS 50.0%
!! GGTGATGGTGGAACGACAAA+AGG + Chr6:24639133-24639152 MsG0680031685.01.T01:CDS 50.0%
!! GTGGTGGATGGACCATTACA+TGG + Chr6:24640129-24640148 MsG0680031685.01.T01:CDS 50.0%
GCTCTTGAAGCCAGAGCAAC+TGG + Chr6:24638638-24638657 MsG0680031685.01.T01:CDS 55.0%
GGTAGGTCACCTTGCAATCC+TGG - Chr6:24638956-24638975 None:intergenic 55.0%
TGTCTTTGCGCCTTGCATCG+CGG + Chr6:24638670-24638689 MsG0680031685.01.T01:CDS 55.0%
! AACCGGGCTCCCGATTTGAT+CGG - Chr6:24639866-24639885 None:intergenic 55.0%
! GCTTGGCTTCCTGGTAGTGA+AGG + Chr6:24640788-24640807 MsG0680031685.01.T01:CDS 55.0%
!! TTGACGGACTCGTTGCTGCT+TGG + Chr6:24640771-24640790 MsG0680031685.01.T01:CDS 55.0%
GCAGGGACCCTCAACTAGTG+AGG + Chr6:24638597-24638616 MsG0680031685.01.T01:intron 60.0%
TGCCGATCAAATCGGGAGCC+CGG + Chr6:24639861-24639880 MsG0680031685.01.T01:CDS 60.0%
! CTCGTTGCTGCTTGGCTTCC+TGG + Chr6:24640779-24640798 MsG0680031685.01.T01:CDS 60.0%
! GGCTCCCGATTTGATCGGCA+AGG - Chr6:24639861-24639880 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr6 gene 24637143 24641124 24637143 ID=MsG0680031685.01;Name=MsG0680031685.01
Chr6 mRNA 24637143 24641124 24637143 ID=MsG0680031685.01.T01;Parent=MsG0680031685.01;Name=MsG0680031685.01.T01;_AED=0.47;_eAED=0.47;_QI=101|1|1|1|0.88|0.8|10|145|628
Chr6 exon 24637143 24637225 24637143 ID=MsG0680031685.01.T01:exon:15208;Parent=MsG0680031685.01.T01
Chr6 exon 24637689 24637926 24637689 ID=MsG0680031685.01.T01:exon:15209;Parent=MsG0680031685.01.T01
Chr6 exon 24638279 24638483 24638279 ID=MsG0680031685.01.T01:exon:15210;Parent=MsG0680031685.01.T01
Chr6 exon 24638601 24638691 24638601 ID=MsG0680031685.01.T01:exon:15211;Parent=MsG0680031685.01.T01
Chr6 exon 24638869 24639014 24638869 ID=MsG0680031685.01.T01:exon:15212;Parent=MsG0680031685.01.T01
Chr6 exon 24639099 24639342 24639099 ID=MsG0680031685.01.T01:exon:15213;Parent=MsG0680031685.01.T01
Chr6 exon 24639491 24639595 24639491 ID=MsG0680031685.01.T01:exon:15214;Parent=MsG0680031685.01.T01
Chr6 exon 24639700 24639882 24639700 ID=MsG0680031685.01.T01:exon:15215;Parent=MsG0680031685.01.T01
Chr6 exon 24639978 24640182 24639978 ID=MsG0680031685.01.T01:exon:15216;Parent=MsG0680031685.01.T01
Chr6 exon 24640492 24641124 24640492 ID=MsG0680031685.01.T01:exon:15217;Parent=MsG0680031685.01.T01
Chr6 five_prime_UTR 24637143 24637225 24637143 ID=MsG0680031685.01.T01:five_prime_utr;Parent=MsG0680031685.01.T01
Chr6 five_prime_UTR 24637689 24637706 24637689 ID=MsG0680031685.01.T01:five_prime_utr;Parent=MsG0680031685.01.T01
Chr6 CDS 24637707 24637926 24637707 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24638279 24638483 24638279 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24638601 24638691 24638601 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24638869 24639014 24638869 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24639099 24639342 24639099 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24639491 24639595 24639491 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24639700 24639882 24639700 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24639978 24640182 24639978 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 CDS 24640492 24640979 24640492 ID=MsG0680031685.01.T01:cds;Parent=MsG0680031685.01.T01
Chr6 three_prime_UTR 24640980 24641124 24640980 ID=MsG0680031685.01.T01:three_prime_utr;Parent=MsG0680031685.01.T01
Gene Sequence

>MsG0680031685.01.T01

ATGGCAAAATGTTCAATATTTTTGGTGGGGCTATTGCTCTTCCATTGTTTGATAACAATGGCAGAAGCTGAGAATTTCAAATACAAGGATCCAAAGCAACTATTGAATACTAGAATCAAGGATCTTATGGACAGAATGACATTGGAAGAGAAAATTGGTCAGATGGTTCAGATTGATTGCACTGTTGCTTCTGCTGATGTGATGAAAAAATATTATATAGGTAGTATTCTAAGTGGTGGTGGACATACTCCTAAGCAAAATGCTACTGCAAAAGAATGGGTTGATTTTATCAATGAATTTCAAAAGGGTGCTTTATCAACTAGGCTTGGAATTCCAATGATATATGGAATTGATGCTGTTCATGGCCATAACAATGTCTATAAAGCAACCATTTTTCCTCACAATGTTGGTTTAGGAGCTACAAGGGACCCTCAACTAGTGAGGAGAATTGGTGAAGCAACTGCTCTTGAAGCCAGAGCAACTGGAATTCCATATGTCTTTGCGCCTTGCATCGCGGTTTGTCGAGATCCGAGATGGGGTAGATGTTATGAAAGTTACAGTGAAGATCATAAAATAGTCCAATCTATGACTGAGTTAATTCCAGGATTGCAAGGTGACCTACCTGCAAATTGGTCAAAGGGTGTTCCATATGTTGGTGGAAACAAGAAAGTTGCAGCTTGTGCTAAGCACTTCGTTGGTGATGGTGGAACGACAAAAGGAATCAATGAGAATAACACAGTTGCAAACAGACATCAAATCTATGGCATTCACATGCCAGCTTACTATAACTCAATTATTAAGGGTGTCGCAACCGTCATGATCTCTTACTCGAGCTTGAATGGACACAAAATGCATGCTAATCACGATTTAGTCACCGGCTTTCTCAAGAACAAGCTCCGTTTCAGGGGTTTCACCATATCAGATTGGGAGGGAATTGACAGGATAACTTCACCTCCTCATGCTAACTACACATATTCAATTGAAGCCTCAATAAATGCCGGTCTTGACATGATAATGGTTCCCCTTAACTACACAGAATTCATCGATGGCCTAACCTCACTAGTGAAAAAGAATGCCATACCTATGAGTAGAATCGACGATGCAGTGAAGAGAATTTTGAGAGTCAAGTTTGTTATGGGCCTATTTGAAAATCCATTGGCTGATTACAGCCTTGCCGATCAAATCGGGAGCCCGGAGCATAGAGAATTGGCTAGGGAAGCTGTTAGGAAATCATTGGTACTATTGAAGAACGGTAAAAGTTCTGATAAGCCGATACTTCCTCTTCCTAAAAAGGCTCCAAAAATACTTGTTGCTGGAAGCCATGCTGATAATATAGGAAATCAATGTGGTGGATGGACCATTACATGGCAAGGACAAAGTGGCAACAACATGACTACTGGTACTACAATTCTGAATGCTATTAAAAACACAGTTGACAAAGAAACCGTGGTAGAATACAAAGAGCAACCTTCTCAAGACTATGTAAAATCCAATGGTTTTTCATATGCAATTGTGGTAGTTGGAGAGAGACCATATGCAGAAACAGAAGGTGACAGCTTAAATTTGACACTTCCTGCACATGGAATAGAAACAATCAAAAATGTATGCGGCGCAGTGAAATGTGTTGTTGTCTTAATCTCTGGAAGACCTGTTGTTATACAACCATTCCTTAACAAAATTGACGGACTCGTTGCTGCTTGGCTTCCTGGTAGTGAAGGTACTGGTGTTGCTGATGTTTTGTTTGGTGATTATGGATTTACTGGTAAGCTTGCAAGGACATGGTTTAAGACTGTTCATCAGTTACCGATGAATGTTGGGGATCGTCATTATGATCCTTTGTTTCCGTTTGGATTTGGTCTTACAACGGAAGCTATCAAGGCTGCTTAA
Protein sequence

>MsG0680031685.01.T01

MAKCSIFLVGLLLFHCLITMAEAENFKYKDPKQLLNTRIKDLMDRMTLEEKIGQMVQIDCTVASADVMKKYYIGSILSGGGHTPKQNATAKEWVDFINEFQKGALSTRLGIPMIYGIDAVHGHNNVYKATIFPHNVGLGATRDPQLVRRIGEATALEARATGIPYVFAPCIAVCRDPRWGRCYESYSEDHKIVQSMTELIPGLQGDLPANWSKGVPYVGGNKKVAACAKHFVGDGGTTKGINENNTVANRHQIYGIHMPAYYNSIIKGVATVMISYSSLNGHKMHANHDLVTGFLKNKLRFRGFTISDWEGIDRITSPPHANYTYSIEASINAGLDMIMVPLNYTEFIDGLTSLVKKNAIPMSRIDDAVKRILRVKFVMGLFENPLADYSLADQIGSPEHRELAREAVRKSLVLLKNGKSSDKPILPLPKKAPKILVAGSHADNIGNQCGGWTITWQGQSGNNMTTGTTILNAIKNTVDKETVVEYKEQPSQDYVKSNGFSYAIVVVGERPYAETEGDSLNLTLPAHGIETIKNVCGAVKCVVVLISGRPVVIQPFLNKIDGLVAAWLPGSEGTGVADVLFGDYGFTGKLARTWFKTVHQLPMNVGDRHYDPLFPFGFGLTTEAIKAA*