AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014799.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014799.01.T01 MTR_3g464550 82.297 740 59 3 1 670 1 738 0.0 1215
MsG0380014799.01.T01 MTR_5g071340 40.757 449 236 11 231 670 388 815 4.15e-88 298
MsG0380014799.01.T01 MTR_5g071340 32.313 294 104 7 16 230 26 303 1.84e-34 141
MsG0380014799.01.T01 MTR_4g027030 44.622 251 54 6 1 166 1 251 1.18e-48 171
MsG0380014799.01.T01 MTR_7g109640 42.336 137 72 4 534 670 383 512 5.92e-26 114
MsG0380014799.01.T01 MTR_5g024500 36.709 158 76 5 533 669 1 155 9.19e-25 108
MsG0380014799.01.T01 MTR_5g024390 36.709 158 76 5 533 669 1 155 1.21e-24 107
MsG0380014799.01.T01 MTR_1g103830 41.727 139 75 4 535 671 606 740 4.66e-24 108
MsG0380014799.01.T01 MTR_3g103120 37.956 137 81 3 534 670 425 557 6.07e-23 104
MsG0380014799.01.T01 MTR_1g072130 34.715 193 113 5 481 670 765 947 3.51e-22 102
MsG0380014799.01.T01 MTR_3g103110 29.474 190 78 4 534 670 338 524 5.94e-20 95.1
MsG0380014799.01.T01 MTR_2g078040 31.387 137 92 2 535 670 762 897 3.68e-18 89.7
MsG0380014799.01.T01 MTR_7g102610 30.899 178 103 3 500 669 453 618 1.29e-12 71.6
MsG0380014799.01.T01 MTR_3g103160 34.722 144 61 5 537 668 110 232 3.44e-12 69.3
MsG0380014799.01.T01 MTR_1g068930 29.839 124 75 2 546 669 472 583 8.47e-11 65.9
MsG0380014799.01.T01 MTR_1g068930 29.839 124 75 2 546 669 435 546 9.23e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014799.01.T01 AT5G58610 27.051 780 380 24 11 670 23 733 5.97e-70 246
MsG0380014799.01.T01 AT5G58610 27.051 780 380 24 11 670 23 733 1.12e-69 246
MsG0380014799.01.T01 AT5G58610 27.051 780 380 24 11 670 23 733 1.12e-69 246
MsG0380014799.01.T01 AT5G58610 27.051 780 380 24 11 670 23 733 1.63e-69 246
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 1.33e-67 238
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 2.18e-67 238
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 2.63e-67 239
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 2.72e-67 239
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 4.07e-67 239
MsG0380014799.01.T01 AT5G58610 26.953 768 372 24 23 670 26 724 5.13e-67 239
MsG0380014799.01.T01 AT5G58610 27.891 441 238 12 243 670 129 502 1.29e-44 172
MsG0380014799.01.T01 AT1G05380 43.165 139 75 3 535 671 520 656 1.20e-25 113
MsG0380014799.01.T01 AT1G05380 43.165 139 75 3 535 671 520 656 1.20e-25 113
MsG0380014799.01.T01 AT1G05380 43.165 139 75 3 535 671 520 656 1.20e-25 113
MsG0380014799.01.T01 AT5G36740 27.184 309 190 10 385 670 384 680 3.92e-25 112
MsG0380014799.01.T01 AT5G36740 27.184 309 190 10 385 670 384 680 3.92e-25 112
MsG0380014799.01.T01 AT5G36670 27.184 309 190 10 385 670 384 680 4.07e-25 112
MsG0380014799.01.T01 AT5G36670 27.184 309 190 10 385 670 384 680 4.09e-25 112
MsG0380014799.01.T01 AT5G36670 27.184 309 190 10 385 670 384 680 4.09e-25 112
MsG0380014799.01.T01 AT5G36740 27.184 309 190 10 385 670 231 527 4.20e-25 112
MsG0380014799.01.T01 AT5G36670 27.184 309 190 10 385 670 231 527 4.24e-25 112
MsG0380014799.01.T01 AT5G36740 27.184 309 190 10 385 670 384 680 4.41e-25 111
MsG0380014799.01.T01 AT5G36740 27.184 309 190 10 385 670 384 680 4.41e-25 111
MsG0380014799.01.T01 AT5G36670 27.184 309 190 10 385 670 384 680 4.41e-25 111
MsG0380014799.01.T01 AT4G14920 38.788 165 99 2 508 671 553 716 9.75e-24 107
MsG0380014799.01.T01 AT4G14920 38.788 165 99 2 508 671 553 716 9.75e-24 107
MsG0380014799.01.T01 AT4G14920 38.788 165 99 2 508 671 553 716 1.00e-23 107
MsG0380014799.01.T01 AT3G14980 30.435 184 113 4 502 671 575 757 2.59e-20 96.7
MsG0380014799.01.T01 AT3G14980 30.435 184 113 4 502 671 575 757 2.59e-20 96.7
MsG0380014799.01.T01 AT3G14980 30.435 184 113 4 502 671 575 757 2.59e-20 96.7
MsG0380014799.01.T01 AT3G14980 30.435 184 113 4 502 671 530 712 2.65e-20 96.7
MsG0380014799.01.T01 AT3G14980 30.481 187 115 4 499 671 572 757 4.09e-20 95.9
MsG0380014799.01.T01 AT3G14980 29.858 211 130 6 471 671 555 757 4.28e-20 95.9
MsG0380014799.01.T01 AT2G27980 37.374 99 51 1 571 669 637 724 3.98e-14 76.6
MsG0380014799.01.T01 AT2G37520 33.945 109 61 1 562 670 401 498 3.36e-12 70.5

Find 159 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACACCTCTTCTTCTATTATT+TGG 0.106047 3:-60306383 None:intergenic
GGGCACCGTACTGTGCTTTC+TGG 0.111625 3:+60306821 MsG0380014799.01.T01:CDS
ATTCAGAAATCGACTATTTC+TGG 0.151862 3:+60306479 MsG0380014799.01.T01:CDS
AACCAAGACAGAACATTTAA+AGG 0.177176 3:-60306743 None:intergenic
ACCAAGTGCCAATATCTTTC+TGG 0.242341 3:+60306940 MsG0380014799.01.T01:CDS
GAGAATATTCTGAATGATAA+TGG 0.245574 3:+60305091 MsG0380014799.01.T01:CDS
TGAATGGTCAAGGTATTTAA+AGG 0.280119 3:-60306509 None:intergenic
TGGAAACATCTTACATATAT+TGG 0.282087 3:+60305948 MsG0380014799.01.T01:CDS
CCGAAAATGGTCTTGGTATA+AGG 0.282380 3:+60306105 MsG0380014799.01.T01:CDS
CATCGCTTCGGCGCTTTGGC+AGG 0.290256 3:-60306646 None:intergenic
ATTTGTTCCGTTTGCCGCTT+TGG 0.297414 3:+60307073 MsG0380014799.01.T01:CDS
AACTCTTCTCCGTCCGAAAA+TGG 0.313482 3:+60306092 MsG0380014799.01.T01:CDS
TTCATTTCATCACCCAAATC+AGG 0.315241 3:-60305336 None:intergenic
CCTGCAATCGGGCATATAAA+AGG 0.318750 3:+60306297 MsG0380014799.01.T01:CDS
GATCTTGCATTATTTGTATC+TGG 0.322209 3:-60306988 None:intergenic
AGTGAGTGTTTCAAGTGTTT+TGG 0.328028 3:+60305135 MsG0380014799.01.T01:CDS
AACCCTCCATTGATAGGGTT+TGG 0.338749 3:-60304535 None:intergenic
TCTCGAAACCCTCCATTGAT+AGG 0.341585 3:-60304541 None:intergenic
GGAGTAAACATGGGAGGATT+AGG 0.360304 3:+60305176 MsG0380014799.01.T01:CDS
TTTCTCAGCCTTGAAACTTC+CGG 0.360589 3:+60305620 MsG0380014799.01.T01:CDS
CTTATTGCAATGGATTCCAT+TGG 0.361377 3:-60306021 None:intergenic
CATGTTGTTACCAAGGTCTA+AGG 0.373440 3:+60306778 MsG0380014799.01.T01:CDS
GAAGCGATGAATCAACTCTA+AGG 0.378506 3:+60306660 MsG0380014799.01.T01:CDS
GATGGACTAAGAGGCACATT+TGG 0.383730 3:-60306152 None:intergenic
AATGCAAGATCACAAGTCTA+AGG 0.396731 3:+60307000 MsG0380014799.01.T01:CDS
ACCATCGGCCAGAAAGATAT+TGG 0.399541 3:-60306948 None:intergenic
AAACTTCCGGAGATGGAATC+AGG 0.401835 3:+60305633 MsG0380014799.01.T01:CDS
GATTAGGCCAGTGCCTCCTT+TGG 0.406396 3:+60305192 MsG0380014799.01.T01:CDS
GGCACCGTACTGTGCTTTCT+GGG 0.413489 3:+60306822 MsG0380014799.01.T01:CDS
AAGAGGGGTTTCTGGGATCA+TGG 0.419147 3:+60305017 MsG0380014799.01.T01:CDS
TTCCATCTCCGGAAGTTTCA+AGG 0.421345 3:-60305628 None:intergenic
TTTCTGGGATCATGGCATCC+AGG 0.426138 3:+60305025 MsG0380014799.01.T01:CDS
TCATAAGACGTGTCTTGGTC+TGG 0.426619 3:+60307135 MsG0380014799.01.T01:CDS
CGAGTATCTCCTCTAGTTGT+GGG 0.428093 3:+60306191 MsG0380014799.01.T01:CDS
GTCAACTATGACATCTTTGA+AGG 0.428766 3:+60305917 MsG0380014799.01.T01:CDS
CTTCTTCTATTATTTGGAGG+TGG 0.430595 3:-60306377 None:intergenic
AACCTTTAAATGTTCTGTCT+TGG 0.434230 3:+60306741 MsG0380014799.01.T01:CDS
TCCTTCGAATTTCATGCTAC+TGG 0.436416 3:+60306902 MsG0380014799.01.T01:CDS
CCTCTTCTTCTATTATTTGG+AGG 0.441510 3:-60306380 None:intergenic
GAACCTGTTGTTCCTCCGGC+TGG 0.445299 3:+60305693 MsG0380014799.01.T01:CDS
TTTCCAGCCGGAGGAACAAC+AGG 0.446676 3:-60305696 None:intergenic
TTATTGCAATGGATTCCATT+GGG 0.450609 3:-60306020 None:intergenic
TTTGTGGAGACACTTGATAA+TGG 0.452655 3:+60305557 MsG0380014799.01.T01:CDS
TCTTCTTGAGTGCATGTTTG+TGG 0.458079 3:-60306274 None:intergenic
TCATGAGGAAAATGTTGATC+AGG 0.461489 3:+60306529 MsG0380014799.01.T01:CDS
CACTCAAGAAGACCTGCAAT+CGG 0.463785 3:+60306285 MsG0380014799.01.T01:CDS
CGAATAAATCAAGTGCAAAT+CGG 0.466377 3:+60306591 MsG0380014799.01.T01:CDS
AGGTGAACTATTATCTGAAA+AGG 0.467810 3:+60305653 MsG0380014799.01.T01:CDS
TTAGAGTTGATTCATCGCTT+CGG 0.468082 3:-60306658 None:intergenic
GATTCATCGCTTCGGCGCTT+TGG 0.468963 3:-60306650 None:intergenic
AGGCAAGAGGAAGACGCCTT+TGG 0.471117 3:-60306707 None:intergenic
AGAATATTCTGAATGATAAT+GGG 0.475569 3:+60305092 MsG0380014799.01.T01:CDS
AGCCTTGAAACTTCCGGAGA+TGG 0.475638 3:+60305626 MsG0380014799.01.T01:CDS
CAAAGATGTCATAGTTGACT+TGG 0.477083 3:-60305913 None:intergenic
TGAATGAGATGAAGGATTTG+TGG 0.478107 3:+60305541 MsG0380014799.01.T01:CDS
ACATATTGCTTAACAGCATC+GGG 0.489875 3:-60305876 None:intergenic
AGTAAACTTTCTTATTGCAA+TGG 0.489917 3:-60306031 None:intergenic
AACATCTTACATATATTGGA+TGG 0.490421 3:+60305952 MsG0380014799.01.T01:CDS
ATTCTGAATGATAATGGGTT+GGG 0.491960 3:+60305097 MsG0380014799.01.T01:CDS
AGTTCACCTGATTCCATCTC+CGG 0.494011 3:-60305639 None:intergenic
CAAAATGATGCTTCATGCAA+AGG 0.494050 3:+60305735 MsG0380014799.01.T01:CDS
TGTTGTTCCTCCGGCTGGAA+AGG 0.496605 3:+60305698 MsG0380014799.01.T01:CDS
GAAAGAACCTGTTGTTCCTC+CGG 0.496927 3:+60305689 MsG0380014799.01.T01:CDS
TCTCCGTCCGAAAATGGTCT+TGG 0.497129 3:+60306098 MsG0380014799.01.T01:CDS
GAAGCAGCTTTGATTGCCAT+TGG 0.498567 3:+60305765 MsG0380014799.01.T01:CDS
TTCGCCTCCAAAGCGGCAAA+CGG 0.498884 3:-60307080 None:intergenic
TATTCTGAATGATAATGGGT+TGG 0.503416 3:+60305096 MsG0380014799.01.T01:CDS
CCTCCAAATAATAGAAGAAG+AGG 0.505734 3:+60306380 MsG0380014799.01.T01:CDS
GAGAAGAATTTCTGTTTCAG+TGG 0.506628 3:-60306419 None:intergenic
TCACATTCAATAACTGTCCC+TGG 0.509655 3:-60305043 None:intergenic
TTAAAGGTTTATGATGTGAA+AGG 0.510336 3:-60306727 None:intergenic
GATATTGGCACTTGGTCTGA+TGG 0.512828 3:-60306933 None:intergenic
GGAGGTAGTTGGTGATTACT+TGG 0.514159 3:+60305578 MsG0380014799.01.T01:CDS
GCCAATATCTTTCTGGCCGA+TGG 0.514917 3:+60306947 MsG0380014799.01.T01:CDS
CACATATTGCTTAACAGCAT+CGG 0.516322 3:-60305877 None:intergenic
ACCAGGGTGGTAAACAATAC+AGG 0.518289 3:+60305988 MsG0380014799.01.T01:CDS
TTCTGGGATCATGGCATCCA+GGG 0.519201 3:+60305026 MsG0380014799.01.T01:CDS
CTCGAAACCCTCCATTGATA+GGG 0.519612 3:-60304540 None:intergenic
GGTACTGAGATCAAATGAAA+GGG 0.522206 3:+60306682 MsG0380014799.01.T01:CDS
TACCAGGAAGCTTGGTGGGA+AGG 0.523101 3:+60305264 MsG0380014799.01.T01:intron
TGTTCCGTTTGCCGCTTTGG+AGG 0.523366 3:+60307076 MsG0380014799.01.T01:CDS
CCGAGTATCTCCTCTAGTTG+TGG 0.526543 3:+60306190 MsG0380014799.01.T01:CDS
GGACGGAGAAGAGTTCATCA+TGG 0.529822 3:-60306084 None:intergenic
TTACTTGGCTGTTACAGTAA+AGG 0.531524 3:+60305593 MsG0380014799.01.T01:CDS
ATGTAAATTACCAGGAAGCT+TGG 0.532737 3:+60305256 MsG0380014799.01.T01:intron
GAAGCTCCAAACCCTATCAA+TGG 0.533290 3:+60304529 MsG0380014799.01.T01:exon
GGGTACTGAGATCAAATGAA+AGG 0.534729 3:+60306681 MsG0380014799.01.T01:CDS
AAACTCACCAAAGGAGGCAC+TGG 0.535387 3:-60305199 None:intergenic
ATCATCTGAAAGCAGAAGGA+TGG 0.539714 3:+60306342 MsG0380014799.01.T01:CDS
TTCATTTGTCTCAAAACCAA+TGG 0.540122 3:-60305781 None:intergenic
ATCAAATGAAAGGGTGCCAA+AGG 0.545984 3:+60306691 MsG0380014799.01.T01:CDS
ACCTGTATTGTTTACCACCC+TGG 0.547980 3:-60305989 None:intergenic
CTGGACATTGAATGAGATGA+AGG 0.552629 3:+60305533 MsG0380014799.01.T01:CDS
AAATTACCAGGAAGCTTGGT+GGG 0.557807 3:+60305260 MsG0380014799.01.T01:intron
ATTTGGAACGTGACAGTCAC+CGG 0.559065 3:-60306135 None:intergenic
TCATTTCATCACCCAAATCA+GGG 0.559352 3:-60305335 None:intergenic
ATCGGGTCATGGAGTAAACA+TGG 0.561301 3:+60305166 MsG0380014799.01.T01:CDS
TCATATCATAAGACGTGTCT+TGG 0.562434 3:+60307130 MsG0380014799.01.T01:CDS
ATCGGAAGCGAAAACGCTTG+AGG 0.563012 3:+60306609 MsG0380014799.01.T01:CDS
CAATGTCCAGTCACCAATCA+CGG 0.565693 3:-60305520 None:intergenic
ACTCAAGAAGACCTGCAATC+GGG 0.566161 3:+60306286 MsG0380014799.01.T01:CDS
ATGGGAAATTGACATTCACC+AGG 0.568448 3:+60305971 MsG0380014799.01.T01:CDS
ATTTAAAGTCAAATGATCGG+TGG 0.569915 3:+60305820 MsG0380014799.01.T01:CDS
AAATGATAAGTGTGATGGAA+TGG 0.570523 3:+60305293 MsG0380014799.01.T01:CDS
TGGTATTCCACAATGGCTTG+AGG 0.570911 3:-60306254 None:intergenic
TTGCAATGGATTCCATTGGG+TGG 0.572732 3:-60306017 None:intergenic
TCATCTGCCACTGCAACAGA+TGG 0.573346 3:-60306218 None:intergenic
ACATCTTACATATATTGGAT+GGG 0.574348 3:+60305953 MsG0380014799.01.T01:CDS
GGAACGTGACAGTCACCGGC+AGG 0.574813 3:-60306131 None:intergenic
GTTGTAAATGATAAGTGTGA+TGG 0.578294 3:+60305288 MsG0380014799.01.T01:CDS
ACGTGTCTTGGTCTGGAGGT+AGG 0.579812 3:+60307142 MsG0380014799.01.T01:CDS
CTGATTTAAAGTCAAATGAT+CGG 0.580821 3:+60305817 MsG0380014799.01.T01:CDS
AATTTGCCGTGATTGGTGAC+TGG 0.585381 3:+60305514 MsG0380014799.01.T01:CDS
AGAAATCATCTGAAAGCAGA+AGG 0.585694 3:+60306338 MsG0380014799.01.T01:CDS
GCCAGTAGCATGAAATTCGA+AGG 0.587705 3:-60306903 None:intergenic
AAATACCTTGACCATTCATG+AGG 0.588685 3:+60306514 MsG0380014799.01.T01:CDS
TTTAAAGTCAAATGATCGGT+GGG 0.590490 3:+60305821 MsG0380014799.01.T01:CDS
ACGTCTTATGATATGAAGAC+GGG 0.594381 3:-60307123 None:intergenic
TAAATTACCAGGAAGCTTGG+TGG 0.595722 3:+60305259 MsG0380014799.01.T01:intron
GCCAGAAAGATATTGGCACT+TGG 0.596693 3:-60306941 None:intergenic
TCTGGGCGAATAACTCATGA+AGG 0.597089 3:+60306839 MsG0380014799.01.T01:CDS
GATGCTTCATGCAAAGGTGC+TGG 0.599853 3:+60305741 MsG0380014799.01.T01:CDS
ATAGGCAAGTCCTTTCCAGC+CGG 0.600857 3:-60305708 None:intergenic
GAAAATCAATGAAAGAGTTG+AGG 0.603862 3:+60304589 MsG0380014799.01.T01:CDS
TACAGGTACAAGCCACCCAA+TGG 0.603909 3:+60306005 MsG0380014799.01.T01:CDS
CACGTCTTATGATATGAAGA+CGG 0.605602 3:-60307124 None:intergenic
TGGATGGTGATATCGGGTCA+TGG 0.606117 3:+60305155 MsG0380014799.01.T01:CDS
ACAAAATACGAAGAAAACGT+TGG 0.606168 3:+60304507 MsG0380014799.01.T01:five_prime_UTR
CACTTGATAATGGAGGTAGT+TGG 0.609618 3:+60305567 MsG0380014799.01.T01:CDS
TGATTTGGGTGATGAAATGA+AGG 0.612944 3:+60305338 MsG0380014799.01.T01:CDS
GGCAAGTCCTTTCCAGCCGG+AGG 0.613261 3:-60305705 None:intergenic
GGGGCTTCCATCTGTTGCAG+TGG 0.616057 3:+60306211 MsG0380014799.01.T01:CDS
TAAGACGTGTCTTGGTCTGG+AGG 0.616442 3:+60307138 MsG0380014799.01.T01:CDS
AGTGTGATGGAATGGAGGAG+AGG 0.617309 3:+60305301 MsG0380014799.01.T01:CDS
GATGGAAGCCCCACAACTAG+AGG 0.618341 3:-60306200 None:intergenic
CTTGGTATAAGGCATCCTGC+CGG 0.619801 3:+60306116 MsG0380014799.01.T01:CDS
AAGCGATGAATCAACTCTAA+GGG 0.620220 3:+60306661 MsG0380014799.01.T01:CDS
TTTATGATGTGAAAGGCAAG+AGG 0.620240 3:-60306720 None:intergenic
GCTCCAAACCCTATCAATGG+AGG 0.621735 3:+60304532 MsG0380014799.01.T01:exon
TTCGCCCAGAAAGCACAGTA+CGG 0.622172 3:-60306826 None:intergenic
AGATAAGAGCGATCTACCAT+CGG 0.623826 3:-60306963 None:intergenic
ATGTTTGTGGTATTCCACAA+TGG 0.624693 3:-60306261 None:intergenic
CTCCAAACCCTATCAATGGA+GGG 0.628221 3:+60304533 MsG0380014799.01.T01:exon
TTTCTCAAACTCACCAAAGG+AGG 0.629544 3:-60305205 None:intergenic
CCACACAGTCATTTGCGTCA+AGG 0.632292 3:+60307037 MsG0380014799.01.T01:CDS
TGATAAGTGTGATGGAATGG+AGG 0.634449 3:+60305296 MsG0380014799.01.T01:CDS
CCACAACTAGAGGAGATACT+CGG 0.637983 3:-60306190 None:intergenic
AAACGCTTGAGGAATTCAGA+TGG 0.640084 3:+60306620 MsG0380014799.01.T01:CDS
TTATTGTCCTCAAGCCATTG+TGG 0.643240 3:+60306247 MsG0380014799.01.T01:CDS
GTGGAGACACTTGATAATGG+AGG 0.645022 3:+60305560 MsG0380014799.01.T01:CDS
GCAAGATCACAAGTCTAAGG+AGG 0.646340 3:+60307003 MsG0380014799.01.T01:CDS
GAGTATCTCCTCTAGTTGTG+GGG 0.652442 3:+60306192 MsG0380014799.01.T01:CDS
ACAGCAACATGTTGTTACCA+AGG 0.659467 3:+60306771 MsG0380014799.01.T01:CDS
TCGGGTCATGGAGTAAACAT+GGG 0.677391 3:+60305167 MsG0380014799.01.T01:CDS
AAAGAAGTTCGCCTCCAAAG+CGG 0.687855 3:-60307087 None:intergenic
CCTTGACGCAAATGACTGTG+TGG 0.688106 3:-60307037 None:intergenic
GGTCATGGAGTAAACATGGG+AGG 0.696581 3:+60305170 MsG0380014799.01.T01:CDS
TGGGAAATTGACATTCACCA+GGG 0.734667 3:+60305972 MsG0380014799.01.T01:CDS
GAAATTGACATTCACCAGGG+TGG 0.761755 3:+60305975 MsG0380014799.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGTTTATTTTGAT+GGG + Chr3:60304737-60304756 MsG0380014799.01.T01:intron 10.0%
!!! AGTTTGAATTTTTAATTTTC+AGG + Chr3:60304982-60305001 MsG0380014799.01.T01:intron 15.0%
!!! GATTTTTATGTTTATTTTGA+TGG + Chr3:60304736-60304755 MsG0380014799.01.T01:intron 15.0%
!! AGAATATTCTGAATGATAAT+GGG + Chr3:60305092-60305111 MsG0380014799.01.T01:CDS 20.0%
!!! ATGCAAAGTTTTTATTTTGA+TGG + Chr3:60304779-60304798 MsG0380014799.01.T01:intron 20.0%
!!! ATTTGAAGTTTTTGGTTTAT+GGG + Chr3:60304951-60304970 MsG0380014799.01.T01:intron 20.0%
!!! GTATTTTGATTTGAAGTTTT+TGG + Chr3:60304943-60304962 MsG0380014799.01.T01:intron 20.0%
!!! TGCAAAGTTTTTATTTTGAT+GGG + Chr3:60304780-60304799 MsG0380014799.01.T01:intron 20.0%
!!! TTTATTTTGATGGGTTTTTA+GGG + Chr3:60304789-60304808 MsG0380014799.01.T01:intron 20.0%
!!! TTTTATTTTGATGGGTTTTT+AGG + Chr3:60304788-60304807 MsG0380014799.01.T01:intron 20.0%
! AACATCTTACATATATTGGA+TGG + Chr3:60305952-60305971 MsG0380014799.01.T01:CDS 25.0%
! ACATCTTACATATATTGGAT+GGG + Chr3:60305953-60305972 MsG0380014799.01.T01:CDS 25.0%
! AGTAAACTTTCTTATTGCAA+TGG - Chr3:60306034-60306053 None:intergenic 25.0%
! GAGAATATTCTGAATGATAA+TGG + Chr3:60305091-60305110 MsG0380014799.01.T01:CDS 25.0%
! TGGAAACATCTTACATATAT+TGG + Chr3:60305948-60305967 MsG0380014799.01.T01:CDS 25.0%
! TTAAAGGTTTATGATGTGAA+AGG - Chr3:60306730-60306749 None:intergenic 25.0%
!! CTGATTTAAAGTCAAATGAT+CGG + Chr3:60305817-60305836 MsG0380014799.01.T01:CDS 25.0%
!!! GATTTGAAGTTTTTGGTTTA+TGG + Chr3:60304950-60304969 MsG0380014799.01.T01:intron 25.0%
!!! GTTTATTTTGATGGGTTTAT+GGG + Chr3:60304745-60304764 MsG0380014799.01.T01:intron 25.0%
!!! TGTTTATTTTGATGGGTTTA+TGG + Chr3:60304744-60304763 MsG0380014799.01.T01:intron 25.0%
!!! TTTTTTTGTGGGTTTTTTGT+GGG + Chr3:60304643-60304662 MsG0380014799.01.T01:intron 25.0%
!!! TTTTTTTTGTGGGTTTTTTG+TGG + Chr3:60304642-60304661 MsG0380014799.01.T01:intron 25.0%
AACCAAGACAGAACATTTAA+AGG - Chr3:60306746-60306765 None:intergenic 30.0%
AACCTTTAAATGTTCTGTCT+TGG + Chr3:60306741-60306760 MsG0380014799.01.T01:CDS 30.0%
ACAAAATACGAAGAAAACGT+TGG + Chr3:60304507-60304526 MsG0380014799.01.T01:five_prime_UTR 30.0%
ACACCTCTTCTTCTATTATT+TGG - Chr3:60306386-60306405 None:intergenic 30.0%
AGGTGAACTATTATCTGAAA+AGG + Chr3:60305653-60305672 MsG0380014799.01.T01:CDS 30.0%
AGGTTCCAACAATCAATAAT+GGG - Chr3:60304905-60304924 None:intergenic 30.0%
ATTCAGAAATCGACTATTTC+TGG + Chr3:60306479-60306498 MsG0380014799.01.T01:CDS 30.0%
CGAATAAATCAAGTGCAAAT+CGG + Chr3:60306591-60306610 MsG0380014799.01.T01:CDS 30.0%
GAAAATCAATGAAAGAGTTG+AGG + Chr3:60304589-60304608 MsG0380014799.01.T01:CDS 30.0%
GAGAAATGTGATCTTAAGTA+TGG + Chr3:60305222-60305241 MsG0380014799.01.T01:intron 30.0%
GATCTTGCATTATTTGTATC+TGG - Chr3:60306991-60307010 None:intergenic 30.0%
GTAATGTCGATATTCTTTCT+GGG + Chr3:60304611-60304630 MsG0380014799.01.T01:intron 30.0%
GTTGTAAATGATAAGTGTGA+TGG + Chr3:60305288-60305307 MsG0380014799.01.T01:CDS 30.0%
TGACTGTTATGATGTTGAAA+AGG + Chr3:60304710-60304729 MsG0380014799.01.T01:intron 30.0%
TTCATTTGTCTCAAAACCAA+TGG - Chr3:60305784-60305803 None:intergenic 30.0%
! AAATGATAAGTGTGATGGAA+TGG + Chr3:60305293-60305312 MsG0380014799.01.T01:CDS 30.0%
! ATCAACATTTTCCTCATGAA+TGG - Chr3:60306528-60306547 None:intergenic 30.0%
! ATTATTGATTGTTGGAACCT+GGG + Chr3:60304905-60304924 MsG0380014799.01.T01:intron 30.0%
! ATTTAAAGTCAAATGATCGG+TGG + Chr3:60305820-60305839 MsG0380014799.01.T01:CDS 30.0%
! CATCTTTGAAGGAAAAAGTA+TGG + Chr3:60305928-60305947 MsG0380014799.01.T01:CDS 30.0%
! TGAATGGTCAAGGTATTTAA+AGG - Chr3:60306512-60306531 None:intergenic 30.0%
! TTATTGCAATGGATTCCATT+GGG - Chr3:60306023-60306042 None:intergenic 30.0%
! TTTAAAGTCAAATGATCGGT+GGG + Chr3:60305821-60305840 MsG0380014799.01.T01:CDS 30.0%
!! ATTCTGAATGATAATGGGTT+GGG + Chr3:60305097-60305116 MsG0380014799.01.T01:CDS 30.0%
!! TATTCTGAATGATAATGGGT+TGG + Chr3:60305096-60305115 MsG0380014799.01.T01:CDS 30.0%
!!! GAAGCATCATTTTGAAACAT+AGG - Chr3:60305729-60305748 None:intergenic 30.0%
!!! GGCTCTTGATTTTTTTTTGT+GGG + Chr3:60304632-60304651 MsG0380014799.01.T01:intron 30.0%
!!! GTTGCTTTTTGAATTGATTG+AGG + Chr3:60305435-60305454 MsG0380014799.01.T01:intron 30.0%
AAAAAGGAATTTGCCGTGAT+TGG + Chr3:60305507-60305526 MsG0380014799.01.T01:intron 35.0%
AAATACCTTGACCATTCATG+AGG + Chr3:60306514-60306533 MsG0380014799.01.T01:CDS 35.0%
AAGCGATGAATCAACTCTAA+GGG + Chr3:60306661-60306680 MsG0380014799.01.T01:CDS 35.0%
AATGCAAGATCACAAGTCTA+AGG + Chr3:60307000-60307019 MsG0380014799.01.T01:CDS 35.0%
ACATATTGCTTAACAGCATC+GGG - Chr3:60305879-60305898 None:intergenic 35.0%
ACATTTCTCAAACTCACCAA+AGG - Chr3:60305211-60305230 None:intergenic 35.0%
ACGTCTTATGATATGAAGAC+GGG - Chr3:60307126-60307145 None:intergenic 35.0%
AGAAATCATCTGAAAGCAGA+AGG + Chr3:60306338-60306357 MsG0380014799.01.T01:CDS 35.0%
ATGTAAATTACCAGGAAGCT+TGG + Chr3:60305256-60305275 MsG0380014799.01.T01:intron 35.0%
ATGTTTGTGGTATTCCACAA+TGG - Chr3:60306264-60306283 None:intergenic 35.0%
CAAAATGATGCTTCATGCAA+AGG + Chr3:60305735-60305754 MsG0380014799.01.T01:CDS 35.0%
CAAAGATGTCATAGTTGACT+TGG - Chr3:60305916-60305935 None:intergenic 35.0%
CACATATTGCTTAACAGCAT+CGG - Chr3:60305880-60305899 None:intergenic 35.0%
CACGTCTTATGATATGAAGA+CGG - Chr3:60307127-60307146 None:intergenic 35.0%
CACTTGTTTACAGAAAGAAG+TGG + Chr3:60304834-60304853 MsG0380014799.01.T01:intron 35.0%
CAGGTTCCAACAATCAATAA+TGG - Chr3:60304906-60304925 None:intergenic 35.0%
CCTCCAAATAATAGAAGAAG+AGG + Chr3:60306380-60306399 MsG0380014799.01.T01:CDS 35.0%
CCTCTTCTTCTATTATTTGG+AGG - Chr3:60306383-60306402 None:intergenic 35.0%
CTTCTTCTATTATTTGGAGG+TGG - Chr3:60306380-60306399 None:intergenic 35.0%
GAGAAGAATTTCTGTTTCAG+TGG - Chr3:60306422-60306441 None:intergenic 35.0%
GGTAATGTCGATATTCTTTC+TGG + Chr3:60304610-60304629 MsG0380014799.01.T01:intron 35.0%
GGTATGATGTACGACAAAAA+AGG + Chr3:60305491-60305510 MsG0380014799.01.T01:intron 35.0%
GTCAACTATGACATCTTTGA+AGG + Chr3:60305917-60305936 MsG0380014799.01.T01:CDS 35.0%
TCATATCATAAGACGTGTCT+TGG + Chr3:60307130-60307149 MsG0380014799.01.T01:CDS 35.0%
TCATGAGGAAAATGTTGATC+AGG + Chr3:60306529-60306548 MsG0380014799.01.T01:CDS 35.0%
TCATTTCATCACCCAAATCA+GGG - Chr3:60305338-60305357 None:intergenic 35.0%
TGAATGAGATGAAGGATTTG+TGG + Chr3:60305541-60305560 MsG0380014799.01.T01:CDS 35.0%
TTACTTGGCTGTTACAGTAA+AGG + Chr3:60305593-60305612 MsG0380014799.01.T01:CDS 35.0%
TTCATTTCATCACCCAAATC+AGG - Chr3:60305339-60305358 None:intergenic 35.0%
TTTATGATGTGAAAGGCAAG+AGG - Chr3:60306723-60306742 None:intergenic 35.0%
TTTGTGGAGACACTTGATAA+TGG + Chr3:60305557-60305576 MsG0380014799.01.T01:CDS 35.0%
! ATTTTCCTCATGAATGGTCA+AGG - Chr3:60306522-60306541 None:intergenic 35.0%
! CATTATTGATTGTTGGAACC+TGG + Chr3:60304904-60304923 MsG0380014799.01.T01:intron 35.0%
! CCTTATACCAAGACCATTTT+CGG - Chr3:60306108-60306127 None:intergenic 35.0%
! CTTATTGCAATGGATTCCAT+TGG - Chr3:60306024-60306043 None:intergenic 35.0%
! GGTACTGAGATCAAATGAAA+GGG + Chr3:60306682-60306701 MsG0380014799.01.T01:CDS 35.0%
! GTGTGTTGATGTAAATTACC+AGG + Chr3:60305248-60305267 MsG0380014799.01.T01:intron 35.0%
! TGATTTGGGTGATGAAATGA+AGG + Chr3:60305338-60305357 MsG0380014799.01.T01:CDS 35.0%
! TTAGAGTTGATTCATCGCTT+CGG - Chr3:60306661-60306680 None:intergenic 35.0%
! TTATTGATTGTTGGAACCTG+GGG + Chr3:60304906-60304925 MsG0380014799.01.T01:intron 35.0%
!! AGTGAGTGTTTCAAGTGTTT+TGG + Chr3:60305135-60305154 MsG0380014799.01.T01:CDS 35.0%
!! AGTGTTTCAAGTGTTTTGGA+TGG + Chr3:60305139-60305158 MsG0380014799.01.T01:CDS 35.0%
!! AGTGTTTTGGATGGTGATAT+CGG + Chr3:60305148-60305167 MsG0380014799.01.T01:CDS 35.0%
!!! ATCTTTTCAGATGGACTAAG+AGG - Chr3:60306164-60306183 None:intergenic 35.0%
!!! GGGCTCTTGATTTTTTTTTG+TGG + Chr3:60304631-60304650 MsG0380014799.01.T01:intron 35.0%
!!! TAATGGGTTGGGTAATTTTG+TGG + Chr3:60305108-60305127 MsG0380014799.01.T01:CDS 35.0%
!!! TGATGGGTTTATGGGTTTTA+GGG + Chr3:60304753-60304772 MsG0380014799.01.T01:intron 35.0%
!!! TTGATGGGTTTATGGGTTTT+AGG + Chr3:60304752-60304771 MsG0380014799.01.T01:intron 35.0%
!!! TTTTTAGGGTTCTTGCAATG+AGG + Chr3:60304803-60304822 MsG0380014799.01.T01:intron 35.0%
!!! TTTTTTGTCGAGCAAAACGT+GGG + Chr3:60306801-60306820 MsG0380014799.01.T01:CDS 35.0%
AAACGCTTGAGGAATTCAGA+TGG + Chr3:60306620-60306639 MsG0380014799.01.T01:CDS 40.0%
AAATTACCAGGAAGCTTGGT+GGG + Chr3:60305260-60305279 MsG0380014799.01.T01:intron 40.0%
ACAGCAACATGTTGTTACCA+AGG + Chr3:60306771-60306790 MsG0380014799.01.T01:CDS 40.0%
ACCAAGTGCCAATATCTTTC+TGG + Chr3:60306940-60306959 MsG0380014799.01.T01:CDS 40.0%
AGATAAGAGCGATCTACCAT+CGG - Chr3:60306966-60306985 None:intergenic 40.0%
ATCATCTGAAAGCAGAAGGA+TGG + Chr3:60306342-60306361 MsG0380014799.01.T01:CDS 40.0%
ATGGGAAATTGACATTCACC+AGG + Chr3:60305971-60305990 MsG0380014799.01.T01:CDS 40.0%
CATGTTGTTACCAAGGTCTA+AGG + Chr3:60306778-60306797 MsG0380014799.01.T01:CDS 40.0%
CGACAAAAAACCTTAGACCT+TGG - Chr3:60306791-60306810 None:intergenic 40.0%
CTGGACATTGAATGAGATGA+AGG + Chr3:60305533-60305552 MsG0380014799.01.T01:CDS 40.0%
GAAGCGATGAATCAACTCTA+AGG + Chr3:60306660-60306679 MsG0380014799.01.T01:CDS 40.0%
GATTGAGGAGTTGTATCTTC+CGG + Chr3:60305450-60305469 MsG0380014799.01.T01:intron 40.0%
TAAATTACCAGGAAGCTTGG+TGG + Chr3:60305259-60305278 MsG0380014799.01.T01:intron 40.0%
TCACATTCAATAACTGTCCC+TGG - Chr3:60305046-60305065 None:intergenic 40.0%
TCAGGATTGGGATGAAGTTA+CGG + Chr3:60305387-60305406 MsG0380014799.01.T01:intron 40.0%
TCCTTCGAATTTCATGCTAC+TGG + Chr3:60306902-60306921 MsG0380014799.01.T01:CDS 40.0%
TCTTCTTGAGTGCATGTTTG+TGG - Chr3:60306277-60306296 None:intergenic 40.0%
TGAAATGAAGGTCGGAATTC+AGG + Chr3:60305350-60305369 MsG0380014799.01.T01:intron 40.0%
TGGGAAATTGACATTCACCA+GGG + Chr3:60305972-60305991 MsG0380014799.01.T01:CDS 40.0%
TTACAGAAAGAAGTGGCATC+AGG + Chr3:60304841-60304860 MsG0380014799.01.T01:intron 40.0%
TTATTGTCCTCAAGCCATTG+TGG + Chr3:60306247-60306266 MsG0380014799.01.T01:CDS 40.0%
TTGGGTGATGAAATGAAGGT+CGG + Chr3:60305342-60305361 MsG0380014799.01.T01:intron 40.0%
TTTCTCAAACTCACCAAAGG+AGG - Chr3:60305208-60305227 None:intergenic 40.0%
TTTCTCAGCCTTGAAACTTC+CGG + Chr3:60305620-60305639 MsG0380014799.01.T01:CDS 40.0%
! AATGCGGATTAACTCAGGAT+TGG + Chr3:60305374-60305393 MsG0380014799.01.T01:intron 40.0%
! ACTGTGCTTTTCCCTGATTT+GGG + Chr3:60305324-60305343 MsG0380014799.01.T01:CDS 40.0%
! ATACCAAGACCATTTTCGGA+CGG - Chr3:60306104-60306123 None:intergenic 40.0%
! ATGCGGATTAACTCAGGATT+GGG + Chr3:60305375-60305394 MsG0380014799.01.T01:intron 40.0%
! CCGAAAATGGTCTTGGTATA+AGG + Chr3:60306105-60306124 MsG0380014799.01.T01:CDS 40.0%
! TGATAAGTGTGATGGAATGG+AGG + Chr3:60305296-60305315 MsG0380014799.01.T01:CDS 40.0%
! TGGGTCCCATTATTGATTGT+TGG + Chr3:60304897-60304916 MsG0380014799.01.T01:intron 40.0%
!! ATCAAATGAAAGGGTGCCAA+AGG + Chr3:60306691-60306710 MsG0380014799.01.T01:CDS 40.0%
!! CACTTGATAATGGAGGTAGT+TGG + Chr3:60305567-60305586 MsG0380014799.01.T01:CDS 40.0%
!! GGGTACTGAGATCAAATGAA+AGG + Chr3:60306681-60306700 MsG0380014799.01.T01:CDS 40.0%
!! GTGTTTTGGATGGTGATATC+GGG + Chr3:60305149-60305168 MsG0380014799.01.T01:CDS 40.0%
!!! AGGTGAAGAGTTTTGAAGAG+GGG + Chr3:60305002-60305021 MsG0380014799.01.T01:intron 40.0%
!!! AGTTTTGAAGAGGGGTTTCT+GGG + Chr3:60305010-60305029 MsG0380014799.01.T01:CDS 40.0%
!!! CAGGTGAAGAGTTTTGAAGA+GGG + Chr3:60305001-60305020 MsG0380014799.01.T01:intron 40.0%
!!! CGGTTCTGAATCTTTTCAGA+TGG - Chr3:60306173-60306192 None:intergenic 40.0%
!!! GTTTTTTGTCGAGCAAAACG+TGG + Chr3:60306800-60306819 MsG0380014799.01.T01:CDS 40.0%
!!! TCAGGTGAAGAGTTTTGAAG+AGG + Chr3:60305000-60305019 MsG0380014799.01.T01:intron 40.0%
AAAAGCAACCATTTCCCTCG+TGG - Chr3:60305424-60305443 None:intergenic 45.0%
AAACTTCCGGAGATGGAATC+AGG + Chr3:60305633-60305652 MsG0380014799.01.T01:CDS 45.0%
AAAGAAGTTCGCCTCCAAAG+CGG - Chr3:60307090-60307109 None:intergenic 45.0%
AACCCTCCATTGATAGGGTT+TGG - Chr3:60304538-60304557 None:intergenic 45.0%
AACTCTTCTCCGTCCGAAAA+TGG + Chr3:60306092-60306111 MsG0380014799.01.T01:CDS 45.0%
ACCAGCACTAATAAAACCCC+AGG - Chr3:60304925-60304944 None:intergenic 45.0%
ACCAGGGTGGTAAACAATAC+AGG + Chr3:60305988-60306007 MsG0380014799.01.T01:CDS 45.0%
ACCATCGGCCAGAAAGATAT+TGG - Chr3:60306951-60306970 None:intergenic 45.0%
ACCTGTATTGTTTACCACCC+TGG - Chr3:60305992-60306011 None:intergenic 45.0%
ACTCAAGAAGACCTGCAATC+GGG + Chr3:60306286-60306305 MsG0380014799.01.T01:CDS 45.0%
AGGTCGGAATTCAGGAAATG+CGG + Chr3:60305358-60305377 MsG0380014799.01.T01:intron 45.0%
AGTTCACCTGATTCCATCTC+CGG - Chr3:60305642-60305661 None:intergenic 45.0%
ATCAGGACCCATTAATCCGT+GGG + Chr3:60304858-60304877 MsG0380014799.01.T01:intron 45.0%
ATCGGGTCATGGAGTAAACA+TGG + Chr3:60305166-60305185 MsG0380014799.01.T01:CDS 45.0%
CAAATTTGCCTTACCGACAC+CGG - Chr3:60305472-60305491 None:intergenic 45.0%
CAATGTCCAGTCACCAATCA+CGG - Chr3:60305523-60305542 None:intergenic 45.0%
CACTCAAGAAGACCTGCAAT+CGG + Chr3:60306285-60306304 MsG0380014799.01.T01:CDS 45.0%
CCACAACTAGAGGAGATACT+CGG - Chr3:60306193-60306212 None:intergenic 45.0%
CCTGCAATCGGGCATATAAA+AGG + Chr3:60306297-60306316 MsG0380014799.01.T01:CDS 45.0%
CGAGTATCTCCTCTAGTTGT+GGG + Chr3:60306191-60306210 MsG0380014799.01.T01:CDS 45.0%
CTCCAAACCCTATCAATGGA+GGG + Chr3:60304533-60304552 MsG0380014799.01.T01:exon 45.0%
CTCGAAACCCTCCATTGATA+GGG - Chr3:60304543-60304562 None:intergenic 45.0%
GAAAGAACCTGTTGTTCCTC+CGG + Chr3:60305689-60305708 MsG0380014799.01.T01:CDS 45.0%
GAAATTGACATTCACCAGGG+TGG + Chr3:60305975-60305994 MsG0380014799.01.T01:CDS 45.0%
GAAGCTCCAAACCCTATCAA+TGG + Chr3:60304529-60304548 MsG0380014799.01.T01:exon 45.0%
GAGTATCTCCTCTAGTTGTG+GGG + Chr3:60306192-60306211 MsG0380014799.01.T01:CDS 45.0%
GATATTGGCACTTGGTCTGA+TGG - Chr3:60306936-60306955 None:intergenic 45.0%
GCAAGATCACAAGTCTAAGG+AGG + Chr3:60307003-60307022 MsG0380014799.01.T01:CDS 45.0%
GCCAGAAAGATATTGGCACT+TGG - Chr3:60306944-60306963 None:intergenic 45.0%
GCCAGTAGCATGAAATTCGA+AGG - Chr3:60306906-60306925 None:intergenic 45.0%
GGAGTAAACATGGGAGGATT+AGG + Chr3:60305176-60305195 MsG0380014799.01.T01:CDS 45.0%
GGATGAAGTTACGGAGAAGT+GGG + Chr3:60305396-60305415 MsG0380014799.01.T01:intron 45.0%
TCATAAGACGTGTCTTGGTC+TGG + Chr3:60307135-60307154 MsG0380014799.01.T01:CDS 45.0%
TCGGGTCATGGAGTAAACAT+GGG + Chr3:60305167-60305186 MsG0380014799.01.T01:CDS 45.0%
TCTCGAAACCCTCCATTGAT+AGG - Chr3:60304544-60304563 None:intergenic 45.0%
TCTGGGCGAATAACTCATGA+AGG + Chr3:60306839-60306858 MsG0380014799.01.T01:CDS 45.0%
TGGTATTCCACAATGGCTTG+AGG - Chr3:60306257-60306276 None:intergenic 45.0%
TTCCATCTCCGGAAGTTTCA+AGG - Chr3:60305631-60305650 None:intergenic 45.0%
! AATTTGCCGTGATTGGTGAC+TGG + Chr3:60305514-60305533 MsG0380014799.01.T01:CDS 45.0%
! ATTTGGAACGTGACAGTCAC+CGG - Chr3:60306138-60306157 None:intergenic 45.0%
! ATTTGTTCCGTTTGCCGCTT+TGG + Chr3:60307073-60307092 MsG0380014799.01.T01:CDS 45.0%
! CAGGAAATGCGGATTAACTC+AGG + Chr3:60305369-60305388 MsG0380014799.01.T01:intron 45.0%
! CCTTTTATATGCCCGATTGC+AGG - Chr3:60306300-60306319 None:intergenic 45.0%
! GAAGCAGCTTTGATTGCCAT+TGG + Chr3:60305765-60305784 MsG0380014799.01.T01:CDS 45.0%
! GACTGTGCTTTTCCCTGATT+TGG + Chr3:60305323-60305342 MsG0380014799.01.T01:CDS 45.0%
! TTGCAATGGATTCCATTGGG+TGG - Chr3:60306020-60306039 None:intergenic 45.0%
!! GATGGACTAAGAGGCACATT+TGG - Chr3:60306155-60306174 None:intergenic 45.0%
!! GGAGGTAGTTGGTGATTACT+TGG + Chr3:60305578-60305597 MsG0380014799.01.T01:CDS 45.0%
!! GTGGAGACACTTGATAATGG+AGG + Chr3:60305560-60305579 MsG0380014799.01.T01:CDS 45.0%
!! TGGGTTGGGTAATTTTGTGG+AGG + Chr3:60305111-60305130 MsG0380014799.01.T01:CDS 45.0%
!!! ACCTGGGGTTTTATTAGTGC+TGG + Chr3:60304921-60304940 MsG0380014799.01.T01:intron 45.0%
!!! GAGTTTTGAAGAGGGGTTTC+TGG + Chr3:60305009-60305028 MsG0380014799.01.T01:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTTGT+GGG + Chr3:60304667-60304686 MsG0380014799.01.T01:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG + Chr3:60304666-60304685 MsG0380014799.01.T01:intron 5.0%
AGCCTTGAAACTTCCGGAGA+TGG + Chr3:60305626-60305645 MsG0380014799.01.T01:CDS 50.0%
ATAGGCAAGTCCTTTCCAGC+CGG - Chr3:60305711-60305730 None:intergenic 50.0%
ATCGGAAGCGAAAACGCTTG+AGG + Chr3:60306609-60306628 MsG0380014799.01.T01:CDS 50.0%
CATCAGGACCCATTAATCCG+TGG + Chr3:60304857-60304876 MsG0380014799.01.T01:intron 50.0%
CCACACAGTCATTTGCGTCA+AGG + Chr3:60307037-60307056 MsG0380014799.01.T01:CDS 50.0%
CCGAGTATCTCCTCTAGTTG+TGG + Chr3:60306190-60306209 MsG0380014799.01.T01:CDS 50.0%
CCTTGACGCAAATGACTGTG+TGG - Chr3:60307040-60307059 None:intergenic 50.0%
GCTCCAAACCCTATCAATGG+AGG + Chr3:60304532-60304551 MsG0380014799.01.T01:exon 50.0%
GGACGGAGAAGAGTTCATCA+TGG - Chr3:60306087-60306106 None:intergenic 50.0%
GGAGTTGTATCTTCCGGTGT+CGG + Chr3:60305456-60305475 MsG0380014799.01.T01:intron 50.0%
GGGATGAAGTTACGGAGAAG+TGG + Chr3:60305395-60305414 MsG0380014799.01.T01:intron 50.0%
GGTCATGGAGTAAACATGGG+AGG + Chr3:60305170-60305189 MsG0380014799.01.T01:CDS 50.0%
TAAGACGTGTCTTGGTCTGG+AGG + Chr3:60307138-60307157 MsG0380014799.01.T01:CDS 50.0%
TACAGGTACAAGCCACCCAA+TGG + Chr3:60306005-60306024 MsG0380014799.01.T01:CDS 50.0%
TCATCTGCCACTGCAACAGA+TGG - Chr3:60306221-60306240 None:intergenic 50.0%
TCTCCGTCCGAAAATGGTCT+TGG + Chr3:60306098-60306117 MsG0380014799.01.T01:CDS 50.0%
TGGATGGTGATATCGGGTCA+TGG + Chr3:60305155-60305174 MsG0380014799.01.T01:CDS 50.0%
! AAACTCACCAAAGGAGGCAC+TGG - Chr3:60305202-60305221 None:intergenic 50.0%
! AAGTGGGTCCCACGGATTAA+TGG - Chr3:60304869-60304888 None:intergenic 50.0%
! AGTGGGTCCCACGGATTAAT+GGG - Chr3:60304868-60304887 None:intergenic 50.0%
! AGTGTGATGGAATGGAGGAG+AGG + Chr3:60305301-60305320 MsG0380014799.01.T01:CDS 50.0%
! CTTGGTATAAGGCATCCTGC+CGG + Chr3:60306116-60306135 MsG0380014799.01.T01:CDS 50.0%
! GATGCTTCATGCAAAGGTGC+TGG + Chr3:60305741-60305760 MsG0380014799.01.T01:CDS 50.0%
! GCCAATATCTTTCTGGCCGA+TGG + Chr3:60306947-60306966 MsG0380014799.01.T01:CDS 50.0%
! TTCGCCCAGAAAGCACAGTA+CGG - Chr3:60306829-60306848 None:intergenic 50.0%
!! AAGAGGGGTTTCTGGGATCA+TGG + Chr3:60305017-60305036 MsG0380014799.01.T01:CDS 50.0%
!! CGGTGTCGGTAAGGCAAATT+TGG + Chr3:60305470-60305489 MsG0380014799.01.T01:intron 50.0%
!! TGTATCTTCCGGTGTCGGTA+AGG + Chr3:60305461-60305480 MsG0380014799.01.T01:intron 50.0%
!! TTCTGGGATCATGGCATCCA+GGG + Chr3:60305026-60305045 MsG0380014799.01.T01:CDS 50.0%
!! TTTCTGGGATCATGGCATCC+AGG + Chr3:60305025-60305044 MsG0380014799.01.T01:CDS 50.0%
ACGTGTCTTGGTCTGGAGGT+AGG + Chr3:60307142-60307161 MsG0380014799.01.T01:CDS 55.0%
AGGCAAGAGGAAGACGCCTT+TGG - Chr3:60306710-60306729 None:intergenic 55.0%
CCAAGAGAAAGTGGGTCCCA+CGG - Chr3:60304877-60304896 None:intergenic 55.0%
GATGGAAGCCCCACAACTAG+AGG - Chr3:60306203-60306222 None:intergenic 55.0%
GATTAGGCCAGTGCCTCCTT+TGG + Chr3:60305192-60305211 MsG0380014799.01.T01:CDS 55.0%
GATTCATCGCTTCGGCGCTT+TGG - Chr3:60306653-60306672 None:intergenic 55.0%
GGCACCGTACTGTGCTTTCT+GGG + Chr3:60306822-60306841 MsG0380014799.01.T01:CDS 55.0%
GGGACCCACCAAGAGAAAGT+GGG - Chr3:60304885-60304904 None:intergenic 55.0%
GGGACCCACTTTCTCTTGGT+GGG + Chr3:60304878-60304897 MsG0380014799.01.T01:intron 55.0%
TGGGACCCACCAAGAGAAAG+TGG - Chr3:60304886-60304905 None:intergenic 55.0%
TGGGACCCACTTTCTCTTGG+TGG + Chr3:60304877-60304896 MsG0380014799.01.T01:intron 55.0%
TGTTGTTCCTCCGGCTGGAA+AGG + Chr3:60305698-60305717 MsG0380014799.01.T01:CDS 55.0%
TTCGCCTCCAAAGCGGCAAA+CGG - Chr3:60307083-60307102 None:intergenic 55.0%
TTTCCAGCCGGAGGAACAAC+AGG - Chr3:60305699-60305718 None:intergenic 55.0%
! TACCAGGAAGCTTGGTGGGA+AGG + Chr3:60305264-60305283 MsG0380014799.01.T01:intron 55.0%
!! TGTTCCGTTTGCCGCTTTGG+AGG + Chr3:60307076-60307095 MsG0380014799.01.T01:CDS 55.0%
AGTGGGAGCCACGAGGGAAA+TGG + Chr3:60305413-60305432 MsG0380014799.01.T01:intron 60.0%
CACCTTCCCACCAAGCTTCC+TGG - Chr3:60305269-60305288 None:intergenic 60.0%
CCGTGGGACCCACTTTCTCT+TGG + Chr3:60304874-60304893 MsG0380014799.01.T01:intron 60.0%
GAACCTGTTGTTCCTCCGGC+TGG + Chr3:60305693-60305712 MsG0380014799.01.T01:CDS 60.0%
GGGGCTTCCATCTGTTGCAG+TGG + Chr3:60306211-60306230 MsG0380014799.01.T01:CDS 60.0%
! GGGCACCGTACTGTGCTTTC+TGG + Chr3:60306821-60306840 MsG0380014799.01.T01:CDS 60.0%
ACGGAGAAGTGGGAGCCACG+AGG + Chr3:60305406-60305425 MsG0380014799.01.T01:intron 65.0%
CATCGCTTCGGCGCTTTGGC+AGG - Chr3:60306649-60306668 None:intergenic 65.0%
CGGAGAAGTGGGAGCCACGA+GGG + Chr3:60305407-60305426 MsG0380014799.01.T01:intron 65.0%
GGAACGTGACAGTCACCGGC+AGG - Chr3:60306134-60306153 None:intergenic 65.0%
GGCAAGTCCTTTCCAGCCGG+AGG - Chr3:60305708-60305727 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 60304501 60307168 60304501 ID=MsG0380014799.01;Name=MsG0380014799.01
Chr3 mRNA 60304501 60307168 60304501 ID=MsG0380014799.01.T01;Parent=MsG0380014799.01;Name=MsG0380014799.01.T01;_AED=0.49;_eAED=0.49;_QI=47|0.33|0.25|1|1|1|4|0|672
Chr3 exon 60304501 60304610 60304501 ID=MsG0380014799.01.T01:exon:1775;Parent=MsG0380014799.01.T01
Chr3 exon 60305004 60305213 60305004 ID=MsG0380014799.01.T01:exon:1776;Parent=MsG0380014799.01.T01
Chr3 exon 60305270 60305359 60305270 ID=MsG0380014799.01.T01:exon:1777;Parent=MsG0380014799.01.T01
Chr3 exon 60305513 60307168 60305513 ID=MsG0380014799.01.T01:exon:1778;Parent=MsG0380014799.01.T01
Chr3 five_prime_UTR 60304501 60304547 60304501 ID=MsG0380014799.01.T01:five_prime_utr;Parent=MsG0380014799.01.T01
Chr3 CDS 60304548 60304610 60304548 ID=MsG0380014799.01.T01:cds;Parent=MsG0380014799.01.T01
Chr3 CDS 60305004 60305213 60305004 ID=MsG0380014799.01.T01:cds;Parent=MsG0380014799.01.T01
Chr3 CDS 60305270 60305359 60305270 ID=MsG0380014799.01.T01:cds;Parent=MsG0380014799.01.T01
Chr3 CDS 60305513 60307168 60305513 ID=MsG0380014799.01.T01:cds;Parent=MsG0380014799.01.T01
Gene Sequence

>MsG0380014799.01.T01

ATGGAGGGTTTCGAGACTTCAAGAAACTCGCAATCAAAGCTGAAAATCAATGAAAGAGTTGAGGTGAAGAGTTTTGAAGAGGGGTTTCTGGGATCATGGCATCCAGGGACAGTTATTGAATGTGAGAAGCTGAAGCGTCATGTTCGATATGAGAATATTCTGAATGATAATGGGTTGGGTAATTTTGTGGAGGTAGTGAGTGTTTCAAGTGTTTTGGATGGTGATATCGGGTCATGGAGTAAACATGGGAGGATTAGGCCAGTGCCTCCTTTGGAAGCTTGGTGGGAAGGTGTTGTAAATGATAAGTGTGATGGAATGGAGGAGAGGACTGTGCTTTTCCCTGATTTGGGTGATGAAATGAAGGAATTTGCCGTGATTGGTGACTGGACATTGAATGAGATGAAGGATTTGTGGAGACACTTGATAATGGAGGTAGTTGGTGATTACTTGGCTGTTACAGTAAAGGAAGTTTTCTCAGCCTTGAAACTTCCGGAGATGGAATCAGGTGAACTATTATCTGAAAAGGAAAAGTTTGAGCAGAAAGAACCTGTTGTTCCTCCGGCTGGAAAGGACTTGCCTATGTTTCAAAATGATGCTTCATGCAAAGGTGCTGGTGAAGCAGCTTTGATTGCCATTGGTTTTGAGACAAATGAACACAGATCGTCAACTGATTTAAAGTCAAATGATCGGTGGGAACGTGTAATAATTTCTGAAACTGAATACTGTCCCGATGCTGTTAAGCAATATGTGCTTGCTTTTGACTCCAAGTCAACTATGACATCTTTGAAGGAAAAAGTATGGAAACATCTTACATATATTGGATGGGAAATTGACATTCACCAGGGTGGTAAACAATACAGGTACAAGCCACCCAATGGAATCCATTGCAATAAGAAAGTTTACTACTCACTTATTGAACTTTGTAAAGCAGAATCCATGATGAACTCTTCTCCGTCCGAAAATGGTCTTGGTATAAGGCATCCTGCCGGTGACTGTCACGTTCCAAATGTGCCTCTTAGTCCATCTGAAAAGATTCAGAACCGAGTATCTCCTCTAGTTGTGGGGCTTCCATCTGTTGCAGTGGCAGATGAACAAGCTTATTGTCCTCAAGCCATTGTGGAATACCACAAACATGCACTCAAGAAGACCTGCAATCGGGCATATAAAAGGAAACTTATTTCAAAAGTAAGAAATCATCTGAAAGCAGAAGGATGGATTTTAATTGATCCACCTCCAAATAATAGAAGAAGAGGTGTTTTATACATTTCTCCACTGAAACAGAAATTCTTCTCATTGAATACAGTATGCAGTTTCTTACTTGAAGAAAGTATTCAGAAATCGACTATTTCTGGCATGCAACCTTTAAATACCTTGACCATTCATGAGGAAAATGTTGATCAGGTATTGAGTGATGATTTATCAAGTAGAGACAGTGTTGCTGCGAATAAATCAAGTGCAAATCGGAAGCGAAAACGCTTGAGGAATTCAGATGGCAGCCTGCCAAAGCGCCGAAGCGATGAATCAACTCTAAGGGTACTGAGATCAAATGAAAGGGTGCCAAAGGCGTCTTCCTCTTGCCTTTCACATCATAAACCTTTAAATGTTCTGTCTTGGTTGATAGACAGCAACATGTTGTTACCAAGGTCTAAGGTTTTTTGTCGAGCAAAACGTGGGCACCGTACTGTGCTTTCTGGGCGAATAACTCATGAAGGCATCAAGTGTAACTGTTGTTCAAGAATATACAGTCTTGTTTCCTTCGAATTTCATGCTACTGGCAGTAATACCATCAGACCAAGTGCCAATATCTTTCTGGCCGATGGTAGATCGCTCTTATCTTGCCAGATACAAATAATGCAAGATCACAAGTCTAAGGAGGCTATGATAAAACCACACAGTCATTTGCGTCAAGGTGAAAACGACTACATTTGTTCCGTTTGCCGCTTTGGAGGCGAACTTCTTTTGTGTGATCAATGCCCGTCTTCATATCATAAGACGTGTCTTGGTCTGGAGGTAGGTTAA
Protein sequence

>MsG0380014799.01.T01

MEGFETSRNSQSKLKINERVEVKSFEEGFLGSWHPGTVIECEKLKRHVRYENILNDNGLGNFVEVVSVSSVLDGDIGSWSKHGRIRPVPPLEAWWEGVVNDKCDGMEERTVLFPDLGDEMKEFAVIGDWTLNEMKDLWRHLIMEVVGDYLAVTVKEVFSALKLPEMESGELLSEKEKFEQKEPVVPPAGKDLPMFQNDASCKGAGEAALIAIGFETNEHRSSTDLKSNDRWERVIISETEYCPDAVKQYVLAFDSKSTMTSLKEKVWKHLTYIGWEIDIHQGGKQYRYKPPNGIHCNKKVYYSLIELCKAESMMNSSPSENGLGIRHPAGDCHVPNVPLSPSEKIQNRVSPLVVGLPSVAVADEQAYCPQAIVEYHKHALKKTCNRAYKRKLISKVRNHLKAEGWILIDPPPNNRRRGVLYISPLKQKFFSLNTVCSFLLEESIQKSTISGMQPLNTLTIHEENVDQVLSDDLSSRDSVAANKSSANRKRKRLRNSDGSLPKRRSDESTLRVLRSNERVPKASSSCLSHHKPLNVLSWLIDSNMLLPRSKVFCRAKRGHRTVLSGRITHEGIKCNCCSRIYSLVSFEFHATGSNTIRPSANIFLADGRSLLSCQIQIMQDHKSKEAMIKPHSHLRQGENDYICSVCRFGGELLLCDQCPSSYHKTCLGLEVG*