AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015152.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015152.01.T01 MTR_3g063950 73.091 275 65 3 30 297 54 326 1.48e-129 372
MsG0380015152.01.T01 MTR_3g063940 61.111 270 92 4 38 295 61 329 3.17e-105 310
MsG0380015152.01.T01 MTR_3g063940 57.000 200 73 4 38 225 61 259 2.92e-65 206
MsG0380015152.01.T01 MTR_7g114660 49.383 243 78 5 63 290 175 387 8.45e-59 193
MsG0380015152.01.T01 MTR_8g465010 48.954 239 74 6 66 290 178 382 1.15e-55 184
MsG0380015152.01.T01 MTR_8g031500 62.319 69 25 1 222 290 275 342 2.07e-17 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015152.01.T01 AT1G54520 46.262 214 78 5 84 290 205 388 7.42e-47 162

Find 69 sgRNAs with CRISPR-Local

Find 372 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTGTACTTGGTGTCATTT+TGG 0.237747 3:-65914929 MsG0380015152.01.T01:CDS
CGTTCATGATGATCTTCATC+TGG 0.265019 3:+65915953 None:intergenic
GTTGTTTAAGGTTGGAATTT+TGG 0.271714 3:-65914704 MsG0380015152.01.T01:intron
CTTTGCAGGTGGATCTTAAA+AGG 0.274049 3:-65913000 MsG0380015152.01.T01:intron
TTCAGGCTGGTGAGGTACTA+TGG 0.302452 3:-65911008 MsG0380015152.01.T01:intron
TTCTTCTTGGTACTTGTACT+TGG 0.329332 3:-65914940 MsG0380015152.01.T01:CDS
GAAGGGAGCTGAATATTTAA+AGG 0.344002 3:-65911178 MsG0380015152.01.T01:CDS
TATTCAGCTCCCTTCATGTT+AGG 0.362444 3:+65911186 None:intergenic
TTTAAATGTCATTCACTTTG+TGG 0.366754 3:+65910754 None:intergenic
CCCTTTCTTCAATTGATAGT+TGG 0.380058 3:+65912948 None:intergenic
CTTATGTTAGGTAACAATAT+TGG 0.386874 3:-65911235 MsG0380015152.01.T01:intron
AGTTACTGTGCTCAAGCTTC+AGG 0.387740 3:-65914872 MsG0380015152.01.T01:intron
AGCATGTTTCTCCACCCTCC+TGG 0.401006 3:+65912975 None:intergenic
TAAACAGCTCACACCTTCCT+TGG 0.423872 3:+65914618 None:intergenic
GGGTTTCATCCTCCCTCTGT+GGG 0.436463 3:+65910983 None:intergenic
GCCTCTTCAGGAGGTGTCAT+GGG 0.436835 3:-65915150 MsG0380015152.01.T01:intron
ATTCAAGTTCTCGACATGTA+AGG 0.451638 3:-65915038 MsG0380015152.01.T01:CDS
TGAGGATGAGGATGAGGATG+AGG 0.461120 3:+65915098 None:intergenic
ACCAACTATCAATTGAAGAA+AGG 0.462903 3:-65912949 MsG0380015152.01.T01:CDS
AGCCTCTTCAGGAGGTGTCA+TGG 0.462952 3:-65915151 MsG0380015152.01.T01:intron
CCAACTATCAATTGAAGAAA+GGG 0.475889 3:-65912948 MsG0380015152.01.T01:CDS
TTTGTGGACCTCAATTTCAC+AGG 0.482985 3:+65910770 None:intergenic
ATGAAATATGAATAAACAAG+TGG 0.483886 3:-65910913 MsG0380015152.01.T01:exon
ACTTGAATACCTTGTGGATG+AGG 0.484874 3:+65915053 None:intergenic
CATCATCGTTACTGTAAAGC+AGG 0.498679 3:-65913122 MsG0380015152.01.T01:CDS
GAAACTTGAGGATGAGGATG+AGG 0.516664 3:+65915092 None:intergenic
GTTCATGATGATCTTCATCT+GGG 0.524652 3:+65915954 None:intergenic
CATGTAAGGGCACAACATCA+TGG 0.525179 3:-65915024 MsG0380015152.01.T01:CDS
CAATTCAAAGGGATCTGACT+AGG 0.526381 3:-65914666 MsG0380015152.01.T01:CDS
GAATGATACCGCTCATGGTA+AGG 0.529020 3:-65915001 MsG0380015152.01.T01:CDS
ACAATATTGGTAGCTACTAA+AGG 0.530785 3:-65911222 MsG0380015152.01.T01:CDS
GGATGGGATGTACAATTCAA+AGG 0.534833 3:-65914678 MsG0380015152.01.T01:CDS
ACAGCTCACACCTTCCTTGG+AGG 0.537908 3:+65914621 None:intergenic
AGGGTTTCATCCTCCCTCTG+TGG 0.538506 3:+65910982 None:intergenic
ACTGAAGAAACTTGAGGATG+AGG 0.542158 3:+65915086 None:intergenic
TGCTAAACCGATCATAACTC+TGG 0.546715 3:+65912864 None:intergenic
GAAATTCTTTCAGGCTGGTG+AGG 0.547725 3:-65911016 MsG0380015152.01.T01:intron
GGTGGATCTTAAAAGGAGCC+AGG 0.555856 3:-65912993 MsG0380015152.01.T01:CDS
GATGGGATGTACAATTCAAA+GGG 0.559417 3:-65914677 MsG0380015152.01.T01:CDS
GAGGATGAAACCCTTTCAGA+TGG 0.562833 3:-65910973 MsG0380015152.01.T01:CDS
TTCAAGTTCTCGACATGTAA+GGG 0.567486 3:-65915037 MsG0380015152.01.T01:CDS
ACATAAGCTACCTAACATGA+AGG 0.574557 3:-65911196 MsG0380015152.01.T01:CDS
ATGTAAGGGCACAACATCAT+GGG 0.583859 3:-65915023 MsG0380015152.01.T01:CDS
ATCTGAACTGAAGAAACTTG+AGG 0.585293 3:+65915080 None:intergenic
TCATCGACTTAGCTAGCTGA+GGG 0.590743 3:+65910932 None:intergenic
TTCATCGACTTAGCTAGCTG+AGG 0.592896 3:+65910931 None:intergenic
AGCTGCTAACACATCCTCCA+AGG 0.594189 3:-65914635 MsG0380015152.01.T01:CDS
CATGGGAATGATACCGCTCA+TGG 0.594539 3:-65915006 MsG0380015152.01.T01:CDS
CAGATTCTTCCTCATCCACA+AGG 0.598144 3:-65915062 MsG0380015152.01.T01:CDS
TGAAATATGAATAAACAAGT+GGG 0.602678 3:-65910912 MsG0380015152.01.T01:exon
GATCTTAAAAGGAGCCAGGA+GGG 0.605501 3:-65912989 MsG0380015152.01.T01:CDS
GTTTAGCAATGAATATTCCA+CGG 0.610272 3:-65912849 MsG0380015152.01.T01:intron
ATAAACAAGTGGGTGATGCT+TGG 0.618412 3:-65910902 MsG0380015152.01.T01:exon
CTTAAAAGGAGCCAGGAGGG+TGG 0.619800 3:-65912986 MsG0380015152.01.T01:CDS
TAAGAAGCCAGAGTTATGAT+CGG 0.619942 3:-65912871 MsG0380015152.01.T01:CDS
GCTAACACATCCTCCAAGGA+AGG 0.620009 3:-65914631 MsG0380015152.01.T01:intron
TTTAAAATATGTACTCACTC+CGG 0.626855 3:+65910794 None:intergenic
ACTATGGACCCCACAGAGGG+AGG 0.637734 3:-65910992 MsG0380015152.01.T01:CDS
TTGTGGACCTCAATTTCACA+GGG 0.639290 3:+65910771 None:intergenic
TCTTCAGGAGGTGTCATGGG+AGG 0.650318 3:-65915147 MsG0380015152.01.T01:intron
GGTACTATGGACCCCACAGA+GGG 0.656661 3:-65910995 MsG0380015152.01.T01:CDS
CATAAGCTACCTAACATGAA+GGG 0.659099 3:-65911195 MsG0380015152.01.T01:CDS
GGTTTCATCCTCCCTCTGTG+GGG 0.661433 3:+65910984 None:intergenic
TCGAGAACTTGAATACCTTG+TGG 0.680648 3:+65915047 None:intergenic
ACTTGCAACCTTACCATGAG+CGG 0.690100 3:+65914993 None:intergenic
GGATCTTAAAAGGAGCCAGG+AGG 0.690908 3:-65912990 MsG0380015152.01.T01:CDS
GTTCGACAACAAGTACATAG+TGG 0.695714 3:-65912239 MsG0380015152.01.T01:intron
GTGATGATGAAATTGAAACA+TGG 0.717936 3:-65914972 MsG0380015152.01.T01:CDS
AGGTACTATGGACCCCACAG+AGG 0.727552 3:-65910996 MsG0380015152.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAGTTAATATTTATG+AGG + Chr3:65915303-65915322 None:intergenic 10.0%
!! ATATTTATGAATATAATAAG+TGG + Chr3:65911274-65911293 None:intergenic 10.0%
!! TCTACTAAAAAAATTAAAAA+TGG + Chr3:65914858-65914877 None:intergenic 10.0%
!!! CTTATATTTTAACATATTTT+TGG - Chr3:65915315-65915334 MsG0380015152.01.T01:intron 10.0%
!!! TTTATTTTTTTTTTAATGTC+CGG - Chr3:65915903-65915922 MsG0380015152.01.T01:five_prime_UTR 10.0%
!! GTATTAAATTTACTTACAAT+TGG + Chr3:65913498-65913517 None:intergenic 15.0%
!!! AATTTTAAGTTTTCAACTAT+TGG - Chr3:65914318-65914337 MsG0380015152.01.T01:intron 15.0%
!!! ATTTTGTAAAAGCAATTAAA+GGG - Chr3:65913911-65913930 MsG0380015152.01.T01:intron 15.0%
!!! GATATAATTTACTTTTCTTT+GGG - Chr3:65914503-65914522 MsG0380015152.01.T01:intron 15.0%
!!! TATTTTGTAAAAGCAATTAA+AGG - Chr3:65913910-65913929 MsG0380015152.01.T01:intron 15.0%
!!! TGATATAATTTACTTTTCTT+TGG - Chr3:65914502-65914521 MsG0380015152.01.T01:intron 15.0%
!!! TTTTAACTCATTAAATAATG+TGG - Chr3:65912239-65912258 MsG0380015152.01.T01:intron 15.0%
!! AGACTTAATTACAATTTGTA+TGG + Chr3:65911126-65911145 None:intergenic 20.0%
!! ATGAAATATGAATAAACAAG+TGG - Chr3:65915803-65915822 MsG0380015152.01.T01:intron 20.0%
!! TGAAATATGAATAAACAAGT+GGG - Chr3:65915804-65915823 MsG0380015152.01.T01:intron 20.0%
!! TTAAAAATTAAATCATACCG+TGG + Chr3:65913887-65913906 None:intergenic 20.0%
!!! AGTATTTTCATTTTCTGTTA+AGG + Chr3:65915045-65915064 None:intergenic 20.0%
!!! CTTCTTTTTTTCAAATTTCT+CGG + Chr3:65914446-65914465 None:intergenic 20.0%
!!! GTATTTTCATTTTCTGTTAA+GGG + Chr3:65915044-65915063 None:intergenic 20.0%
!!! TTCATTTTACACCATAAAAA+AGG + Chr3:65913224-65913243 None:intergenic 20.0%
!!! TTGTGTTTTTATCATTAACA+TGG - Chr3:65911525-65911544 MsG0380015152.01.T01:intron 20.0%
!!! TTTGATTTGTTTTTTTGAGT+TGG - Chr3:65914535-65914554 MsG0380015152.01.T01:intron 20.0%
! AAACACTTTGATATAGATTG+TGG - Chr3:65912612-65912631 MsG0380015152.01.T01:intron 25.0%
! AATATGGTGAGATAAATACA+AGG - Chr3:65911236-65911255 MsG0380015152.01.T01:intron 25.0%
! ACTCTATAAATACAGTTCAA+AGG - Chr3:65910912-65910931 MsG0380015152.01.T01:exon 25.0%
! ACTTAAGAGTTAAGTACTTA+AGG - Chr3:65911178-65911197 MsG0380015152.01.T01:CDS 25.0%
! AGTAATGTATCCAAATTTAC+AGG + Chr3:65915440-65915459 None:intergenic 25.0%
! ATATACCTCATTAACTGATT+TGG + Chr3:65912215-65912234 None:intergenic 25.0%
! ATATGGTGAGATAAATACAA+GGG - Chr3:65911237-65911256 MsG0380015152.01.T01:intron 25.0%
! ATTCTATATTTGGTATCAGA+GGG - Chr3:65914576-65914595 MsG0380015152.01.T01:intron 25.0%
! CAAACAAGGATAAAATACTA+TGG + Chr3:65914755-65914774 None:intergenic 25.0%
! CTTAAGAGTTAAGTACTTAA+GGG - Chr3:65911179-65911198 MsG0380015152.01.T01:CDS 25.0%
! CTTATGTTAGGTAACAATAT+TGG - Chr3:65915481-65915500 MsG0380015152.01.T01:intron 25.0%
! GAATATAGTCAAAGTAGTAA+AGG + Chr3:65914887-65914906 None:intergenic 25.0%
! TAATTCGTAGTATTTATCCA+AGG + Chr3:65915257-65915276 None:intergenic 25.0%
! TATAACCTTGAAATTCTTTC+AGG - Chr3:65915691-65915710 MsG0380015152.01.T01:intron 25.0%
! TCTGATACCAAATATAGAAT+CGG + Chr3:65914576-65914595 None:intergenic 25.0%
! TCTTTGTAAAAAATAGCAGT+AGG - Chr3:65915879-65915898 MsG0380015152.01.T01:intron 25.0%
! TGGTGTAAAATGAAAGATTT+AGG - Chr3:65913230-65913249 MsG0380015152.01.T01:intron 25.0%
! TGTTAGTCAAGTAATTTGAA+TGG + Chr3:65912391-65912410 None:intergenic 25.0%
! TTGATATCTTCCTGTAAATT+TGG - Chr3:65915427-65915446 MsG0380015152.01.T01:intron 25.0%
! TTTAAATGTCATTCACTTTG+TGG + Chr3:65915965-65915984 None:intergenic 25.0%
!! AAGCTTTTACTTGAAATTCT+GGG + Chr3:65910828-65910847 None:intergenic 25.0%
!! AAGTTACACTATGTAGTTTT+TGG - Chr3:65914620-65914639 MsG0380015152.01.T01:intron 25.0%
!! AATTTCAAGTAAAAGCTTGT+GGG - Chr3:65910830-65910849 MsG0380015152.01.T01:three_prime_UTR 25.0%
!! ACTATTCATGCAATATTTTC+TGG - Chr3:65915137-65915156 MsG0380015152.01.T01:exon 25.0%
!! ATGAGATTAAACTTTTGTCA+TGG - Chr3:65912769-65912788 MsG0380015152.01.T01:intron 25.0%
!! ATTGATATACTTCTTGTTGT+TGG - Chr3:65913535-65913554 MsG0380015152.01.T01:intron 25.0%
!! CTTCAATTTCAAGTAATATG+CGG - Chr3:65914115-65914134 MsG0380015152.01.T01:intron 25.0%
!! GCTTACTAATAAATTTTTGC+TGG + Chr3:65915594-65915613 None:intergenic 25.0%
!! GTCATTGTAAAACAGTTTTA+CGG + Chr3:65914067-65914086 None:intergenic 25.0%
!! TATTGCATGTGTAAAACTTT+TGG + Chr3:65912179-65912198 None:intergenic 25.0%
!! TATTTGAGATGTCTTATGTT+AGG - Chr3:65915469-65915488 MsG0380015152.01.T01:intron 25.0%
!! TGATATAGTCTTGAAAACAA+CGG + Chr3:65914701-65914720 None:intergenic 25.0%
!! TTCAATTTCAAGTAATATGC+GGG - Chr3:65914116-65914135 MsG0380015152.01.T01:intron 25.0%
!! TTCTGGTTAATGTTGTATAT+GGG + Chr3:65915080-65915099 None:intergenic 25.0%
!! TTGTTATTGATTGCATAAAG+AGG + Chr3:65912594-65912613 None:intergenic 25.0%
!! TTTAAAATATGTACTCACTC+CGG + Chr3:65915925-65915944 None:intergenic 25.0%
!!! ACAAACCCATTTTGATAATA+GGG + Chr3:65911466-65911485 None:intergenic 25.0%
!!! ACAATTGTTGTTAGATTTTC+TGG + Chr3:65915097-65915116 None:intergenic 25.0%
!!! ATGTTTTTTTAGAAGAGAGT+TGG + Chr3:65914980-65914999 None:intergenic 25.0%
!!! TAGTTTTTGGAAAATCATGT+TGG - Chr3:65914633-65914652 MsG0380015152.01.T01:CDS 25.0%
!!! TGTTTTTTTAGAAGAGAGTT+GGG + Chr3:65914979-65914998 None:intergenic 25.0%
!!! TTTCTGGTTAATGTTGTATA+TGG + Chr3:65915081-65915100 None:intergenic 25.0%
AACATCGCATTGTTAAAACA+TGG + Chr3:65914794-65914813 None:intergenic 30.0%
AACTGTATTTATAGAGTCCT+TGG + Chr3:65910909-65910928 None:intergenic 30.0%
AATGTTTGTGAATCAAACAG+AGG + Chr3:65911097-65911116 None:intergenic 30.0%
ACAGACATATAGTTATGAAG+AGG + Chr3:65912337-65912356 None:intergenic 30.0%
ACCAACTATCAATTGAAGAA+AGG - Chr3:65913767-65913786 MsG0380015152.01.T01:intron 30.0%
ACTGTATTTATAGAGTCCTT+GGG + Chr3:65910908-65910927 None:intergenic 30.0%
AGAGGTAAGAAATAAAGGAA+GGG - Chr3:65912648-65912667 MsG0380015152.01.T01:intron 30.0%
AGCCATTAAAAGAGAATTGA+AGG + Chr3:65914187-65914206 None:intergenic 30.0%
ATCCTACACTTTAGATGATT+TGG - Chr3:65912688-65912707 MsG0380015152.01.T01:intron 30.0%
ATTCTATTAACTGTTTGGAC+AGG - Chr3:65912849-65912868 MsG0380015152.01.T01:intron 30.0%
CCAACTATCAATTGAAGAAA+GGG - Chr3:65913768-65913787 MsG0380015152.01.T01:intron 30.0%
CTATAACTCAAATTGCACTT+TGG + Chr3:65913657-65913676 None:intergenic 30.0%
CTGAAATTGATCAATCTCTA+AGG - Chr3:65911005-65911024 MsG0380015152.01.T01:CDS 30.0%
CTTAAGGGATACATACAAAT+AGG - Chr3:65911194-65911213 MsG0380015152.01.T01:CDS 30.0%
GAAGAAAGGGAAAAATTTGA+TGG - Chr3:65913781-65913800 MsG0380015152.01.T01:intron 30.0%
GATAAAATACTATGGTGTTC+GGG + Chr3:65914747-65914766 None:intergenic 30.0%
GATTCGACAAAGTTATATGT+CGG - Chr3:65912455-65912474 MsG0380015152.01.T01:intron 30.0%
GATTCTATATTTGGTATCAG+AGG - Chr3:65914575-65914594 MsG0380015152.01.T01:intron 30.0%
GCCATTAAAAGAGAATTGAA+GGG + Chr3:65914186-65914205 None:intergenic 30.0%
GGATAAAATACTATGGTGTT+CGG + Chr3:65914748-65914767 None:intergenic 30.0%
GTTTAGCAATGAATATTCCA+CGG - Chr3:65913867-65913886 MsG0380015152.01.T01:intron 30.0%
TAGAGGTAAGAAATAAAGGA+AGG - Chr3:65912647-65912666 MsG0380015152.01.T01:intron 30.0%
TGTATTGTCTCTGTTAAGAA+AGG + Chr3:65913561-65913580 None:intergenic 30.0%
TGTATTTCCAAATGAAGGAA+AGG - Chr3:65912728-65912747 MsG0380015152.01.T01:intron 30.0%
TTCAAAATAACCATCCAGAA+GGG + Chr3:65914008-65914027 None:intergenic 30.0%
TTCTCCCCTATTATCAAAAT+GGG - Chr3:65911458-65911477 MsG0380015152.01.T01:intron 30.0%
TTTCAAAATAACCATCCAGA+AGG + Chr3:65914009-65914028 None:intergenic 30.0%
! AAAGATTTAGGATTCTGATG+TGG - Chr3:65913242-65913261 MsG0380015152.01.T01:intron 30.0%
! AAGTAGTTTTCCATCTGAAA+GGG + Chr3:65915756-65915775 None:intergenic 30.0%
! ACAATATTGGTAGCTACTAA+AGG - Chr3:65915494-65915513 MsG0380015152.01.T01:intron 30.0%
! ACCCTTCAATTCTCTTTTAA+TGG - Chr3:65914182-65914201 MsG0380015152.01.T01:intron 30.0%
! AGTTTTACACATGCATCAAA+TGG + Chr3:65912272-65912291 None:intergenic 30.0%
! ATAAATTTTTGCTGGAGAGA+AGG + Chr3:65915586-65915605 None:intergenic 30.0%
! ATGATTTGGAAGACAAGAAA+TGG - Chr3:65912702-65912721 MsG0380015152.01.T01:intron 30.0%
! CAAGCTTTTACTTGAAATTC+TGG + Chr3:65910829-65910848 None:intergenic 30.0%
! GAATTTCAAGTAAAAGCTTG+TGG - Chr3:65910829-65910848 MsG0380015152.01.T01:three_prime_UTR 30.0%
! GTGATGATGAAATTGAAACA+TGG - Chr3:65911744-65911763 MsG0380015152.01.T01:intron 30.0%
! TAAACTTTTGTCATGGAGAT+GGG - Chr3:65912776-65912795 MsG0380015152.01.T01:intron 30.0%
! TAAATTTTTGCTGGAGAGAA+GGG + Chr3:65915585-65915604 None:intergenic 30.0%
! TAGTTTGTAGGTGTGATTTA+TGG - Chr3:65913081-65913100 MsG0380015152.01.T01:intron 30.0%
! TGATTTGGAAGACAAGAAAT+GGG - Chr3:65912703-65912722 MsG0380015152.01.T01:intron 30.0%
! TTAAACTTTTGTCATGGAGA+TGG - Chr3:65912775-65912794 MsG0380015152.01.T01:intron 30.0%
! TTAAGGTTGGAATTTTGGAT+GGG - Chr3:65912017-65912036 MsG0380015152.01.T01:intron 30.0%
! TTCCAAATCATCTAAAGTGT+AGG + Chr3:65912693-65912712 None:intergenic 30.0%
! TTTTAAACCCTGTGAAATTG+AGG - Chr3:65915938-65915957 MsG0380015152.01.T01:five_prime_UTR 30.0%
! TTTTCTTGTATGCTTTGCAA+TGG + Chr3:65910954-65910973 None:intergenic 30.0%
!! CAAACCCATTTTGATAATAG+GGG + Chr3:65911465-65911484 None:intergenic 30.0%
!! CGTATACTGTTTCTATTTAG+AGG + Chr3:65911371-65911390 None:intergenic 30.0%
!! GACAAACCCATTTTGATAAT+AGG + Chr3:65911467-65911486 None:intergenic 30.0%
!! GTTGTTTAAGGTTGGAATTT+TGG - Chr3:65912012-65912031 MsG0380015152.01.T01:intron 30.0%
!! GTTTTTGTGTCTGTTGTTTA+AGG - Chr3:65912000-65912019 MsG0380015152.01.T01:intron 30.0%
!! TGATTCCATTTTTCGAATGT+AGG - Chr3:65913017-65913036 MsG0380015152.01.T01:intron 30.0%
!! TTCACTACCGATTCTATATT+TGG - Chr3:65914566-65914585 MsG0380015152.01.T01:intron 30.0%
!! TTTAAGGTTGGAATTTTGGA+TGG - Chr3:65912016-65912035 MsG0380015152.01.T01:intron 30.0%
!!! ATGGTTCTTGTTTTTCTTCT+TGG - Chr3:65911763-65911782 MsG0380015152.01.T01:intron 30.0%
!!! CAGTTTCAATTTTGGTTATG+TGG - Chr3:65913156-65913175 MsG0380015152.01.T01:intron 30.0%
!!! GATGGTTATTTTGAAACTCA+TGG - Chr3:65914013-65914032 MsG0380015152.01.T01:intron 30.0%
!!! GCTAGTTTGTTTAGTGTTTT+TGG - Chr3:65913370-65913389 MsG0380015152.01.T01:intron 30.0%
!!! TGTTTGCTTAGTTGTTTTTC+TGG - Chr3:65912959-65912978 MsG0380015152.01.T01:CDS 30.0%
AAAAAAAGAAGCTTCGCAGT+GGG - Chr3:65914455-65914474 MsG0380015152.01.T01:intron 35.0%
AAAACAACTAAGCAAACAGC+AGG + Chr3:65912957-65912976 None:intergenic 35.0%
AAACTGCCCAAAACAATCTA+GGG + Chr3:65913340-65913359 None:intergenic 35.0%
AAGCCTTGGGATATTCATAA+TGG - Chr3:65915350-65915369 MsG0380015152.01.T01:intron 35.0%
AATTGCACTTTGGCCTAATT+AGG + Chr3:65913647-65913666 None:intergenic 35.0%
ACATAAGCTACCTAACATGA+AGG - Chr3:65915520-65915539 MsG0380015152.01.T01:intron 35.0%
AGAAATAAAGGAAGGGGATT+TGG - Chr3:65912655-65912674 MsG0380015152.01.T01:intron 35.0%
ATCAAGAATAGAAGACGACT+TGG + Chr3:65911407-65911426 None:intergenic 35.0%
ATCTGAACTGAAGAAACTTG+AGG + Chr3:65911639-65911658 None:intergenic 35.0%
ATGAGCACAAACAAGTATAG+AGG + Chr3:65911884-65911903 None:intergenic 35.0%
ATTAACTGTTTGGACAGGTA+AGG - Chr3:65912854-65912873 MsG0380015152.01.T01:CDS 35.0%
CACTTTGATATAGATTGTGG+AGG - Chr3:65912615-65912634 MsG0380015152.01.T01:intron 35.0%
CATAAGCTACCTAACATGAA+GGG - Chr3:65915521-65915540 MsG0380015152.01.T01:intron 35.0%
CTACGAATTAGAGAACCATA+TGG - Chr3:65915267-65915286 MsG0380015152.01.T01:intron 35.0%
GAAGGGAGCTGAATATTTAA+AGG - Chr3:65915538-65915557 MsG0380015152.01.T01:intron 35.0%
GACATCCTACATTCGAAAAA+TGG + Chr3:65913025-65913044 None:intergenic 35.0%
GAGGTAAGAAATAAAGGAAG+GGG - Chr3:65912649-65912668 MsG0380015152.01.T01:intron 35.0%
GATGGGATGTACAATTCAAA+GGG - Chr3:65912039-65912058 MsG0380015152.01.T01:intron 35.0%
GGAAGATATCAAAATGCAAC+AGG + Chr3:65915419-65915438 None:intergenic 35.0%
GGGATTGTATTTCCAAATGA+AGG - Chr3:65912723-65912742 MsG0380015152.01.T01:intron 35.0%
GGTCTCATGATACTTAAGAA+GGG - Chr3:65914940-65914959 MsG0380015152.01.T01:CDS 35.0%
GTGGGATTCTATTAACTGTT+TGG - Chr3:65912844-65912863 MsG0380015152.01.T01:intron 35.0%
GTTCATGATGATCTTCATCT+GGG + Chr3:65910765-65910784 None:intergenic 35.0%
GTTCATTCCTTGTCCTAATT+AGG - Chr3:65913631-65913650 MsG0380015152.01.T01:intron 35.0%
GTTCTCCCCTATTATCAAAA+TGG - Chr3:65911457-65911476 MsG0380015152.01.T01:intron 35.0%
TAAAAGAGAATTGAAGGGTG+AGG + Chr3:65914181-65914200 None:intergenic 35.0%
TAACCCCTTTAACACCTATA+GGG + Chr3:65913681-65913700 None:intergenic 35.0%
TAAGAAGCCAGAGTTATGAT+CGG - Chr3:65913845-65913864 MsG0380015152.01.T01:intron 35.0%
TACAAATAGGTGTGACTTAG+CGG - Chr3:65911207-65911226 MsG0380015152.01.T01:CDS 35.0%
TACCAATTCTGAATTCGTCT+CGG - Chr3:65913446-65913465 MsG0380015152.01.T01:intron 35.0%
TCAAAATAACCATCCAGAAG+GGG + Chr3:65914007-65914026 None:intergenic 35.0%
TCAATTAAGAGAGATTGCAG+TGG + Chr3:65913520-65913539 None:intergenic 35.0%
TGACTAACATACGATAACCA+AGG - Chr3:65912402-65912421 MsG0380015152.01.T01:intron 35.0%
TGAGGCAATATTGAACCATA+TGG + Chr3:65915285-65915304 None:intergenic 35.0%
TGGGTAGAGGTAAGAAATAA+AGG - Chr3:65912643-65912662 MsG0380015152.01.T01:intron 35.0%
TGGTCTCATGATACTTAAGA+AGG - Chr3:65914939-65914958 MsG0380015152.01.T01:CDS 35.0%
TGGTTATGTGGTAGTATCTT+CGG - Chr3:65913168-65913187 MsG0380015152.01.T01:intron 35.0%
TGTAAAAGCAATTAAAGGGC+AGG - Chr3:65913915-65913934 MsG0380015152.01.T01:intron 35.0%
TGTTGCCAAATCAGTTAATG+AGG - Chr3:65912207-65912226 MsG0380015152.01.T01:intron 35.0%
TTAAGTATCATGAGACCACT+TGG + Chr3:65914937-65914956 None:intergenic 35.0%
TTCTTCTTGGTACTTGTACT+TGG - Chr3:65911776-65911795 MsG0380015152.01.T01:intron 35.0%
TTGATATAGATTGTGGAGGT+GGG - Chr3:65912619-65912638 MsG0380015152.01.T01:intron 35.0%
TTTGATATAGATTGTGGAGG+TGG - Chr3:65912618-65912637 MsG0380015152.01.T01:intron 35.0%
! ATTCAAGTTCTCGACATGTA+AGG - Chr3:65911678-65911697 MsG0380015152.01.T01:intron 35.0%
! ATTTGAGTTATAGCCCCTAT+AGG - Chr3:65913664-65913683 MsG0380015152.01.T01:intron 35.0%
! CAAGTAGTTTTCCATCTGAA+AGG + Chr3:65915757-65915776 None:intergenic 35.0%
! CCCTTTCTTCAATTGATAGT+TGG + Chr3:65913771-65913790 None:intergenic 35.0%
! CGGAATTTTCTATGCATGTT+TGG + Chr3:65914681-65914700 None:intergenic 35.0%
! CTGCAAAGTTTGTTCATCAA+GGG + Chr3:65913704-65913723 None:intergenic 35.0%
! GAATCATAAGCTTTGTGTCA+GGG + Chr3:65913003-65913022 None:intergenic 35.0%
! GACTTAGCGGATAAGTAATA+TGG - Chr3:65911220-65911239 MsG0380015152.01.T01:CDS 35.0%
! TAGTGTCCCTAGATTGTTTT+GGG - Chr3:65913331-65913350 MsG0380015152.01.T01:intron 35.0%
! TATCCTTGTTTGCTCAGTAA+TGG - Chr3:65914763-65914782 MsG0380015152.01.T01:intron 35.0%
! TGAAGCATTCATATAGCGTA+TGG - Chr3:65915174-65915193 MsG0380015152.01.T01:intron 35.0%
! TTCAAGTTCTCGACATGTAA+GGG - Chr3:65911679-65911698 MsG0380015152.01.T01:intron 35.0%
! TTGTGTCTGTTGTTTAAGGT+TGG - Chr3:65912004-65912023 MsG0380015152.01.T01:intron 35.0%
!! AAAGGTACTGGAAAAAGTAG+TGG - Chr3:65912746-65912765 MsG0380015152.01.T01:intron 35.0%
!!! ACTTGTACTTGGTGTCATTT+TGG - Chr3:65911787-65911806 MsG0380015152.01.T01:intron 35.0%
AACCCCTTTAACACCTATAG+GGG + Chr3:65913680-65913699 None:intergenic 40.0%
AAGAGGCTGAAACTGAGTTT+AGG + Chr3:65911553-65911572 None:intergenic 40.0%
ACCAATTCTGAATTCGTCTC+GGG - Chr3:65913447-65913466 MsG0380015152.01.T01:intron 40.0%
ACCAGCCTGAAAGAATTTCA+AGG + Chr3:65915699-65915718 None:intergenic 40.0%
ACCTTGAAATTCTTTCAGGC+TGG - Chr3:65915695-65915714 MsG0380015152.01.T01:intron 40.0%
ACTGAAGAAACTTGAGGATG+AGG + Chr3:65911633-65911652 None:intergenic 40.0%
ACTTGAATACCTTGTGGATG+AGG + Chr3:65911666-65911685 None:intergenic 40.0%
ACTTTGGCCTAATTAGGACA+AGG + Chr3:65913641-65913660 None:intergenic 40.0%
AGCGTATGGTTCGTTGTTAA+GGG - Chr3:65915188-65915207 MsG0380015152.01.T01:intron 40.0%
ATAAACAAGTGGGTGATGCT+TGG - Chr3:65915814-65915833 MsG0380015152.01.T01:intron 40.0%
ATAGCCCCTATAGGTGTTAA+AGG - Chr3:65913673-65913692 MsG0380015152.01.T01:intron 40.0%
ATCCGACAGAAACAAATGAG+TGG - Chr3:65914215-65914234 MsG0380015152.01.T01:intron 40.0%
ATCTGCAGAAAGCTAGTAGT+TGG + Chr3:65914397-65914416 None:intergenic 40.0%
ATGAGACCACTTGGACAATA+TGG + Chr3:65914928-65914947 None:intergenic 40.0%
ATGCATAGCAAGGCTAACAT+AGG - Chr3:65912528-65912547 MsG0380015152.01.T01:intron 40.0%
CAAAATAACCATCCAGAAGG+GGG + Chr3:65914006-65914025 None:intergenic 40.0%
CAATTCAAAGGGATCTGACT+AGG - Chr3:65912050-65912069 MsG0380015152.01.T01:intron 40.0%
CAGCCATTATGAATATCCCA+AGG + Chr3:65915356-65915375 None:intergenic 40.0%
CATCATCGTTACTGTAAAGC+AGG - Chr3:65913594-65913613 MsG0380015152.01.T01:intron 40.0%
CCTTGATGAACAAACTTTGC+AGG - Chr3:65913702-65913721 MsG0380015152.01.T01:intron 40.0%
CGTTCATGATGATCTTCATC+TGG + Chr3:65910766-65910785 None:intergenic 40.0%
CTTTGCAGGTGGATCTTAAA+AGG - Chr3:65913716-65913735 MsG0380015152.01.T01:intron 40.0%
GAAAAAAAGAAGCTTCGCAG+TGG - Chr3:65914454-65914473 MsG0380015152.01.T01:intron 40.0%
GAAACTGCCCAAAACAATCT+AGG + Chr3:65913341-65913360 None:intergenic 40.0%
GAGATAAATACAAGGGTTGG+TGG - Chr3:65911244-65911263 MsG0380015152.01.T01:intron 40.0%
GATCCATTACTGAGCAAACA+AGG + Chr3:65914769-65914788 None:intergenic 40.0%
GGATGGGATGTACAATTCAA+AGG - Chr3:65912038-65912057 MsG0380015152.01.T01:intron 40.0%
GGTGAGATAAATACAAGGGT+TGG - Chr3:65911241-65911260 MsG0380015152.01.T01:intron 40.0%
GGTGTAATATGGCAAAGTAG+TGG + Chr3:65913985-65914004 None:intergenic 40.0%
GGTGTGAGCTGTTTATTGAA+AGG - Chr3:65912106-65912125 MsG0380015152.01.T01:intron 40.0%
GGTGTGATTTATGGCTGATT+TGG - Chr3:65913090-65913109 MsG0380015152.01.T01:intron 40.0%
GTAAAAGGAGAGGTTGTGTT+AGG + Chr3:65912490-65912509 None:intergenic 40.0%
GTAACCCCTTTAACACCTAT+AGG + Chr3:65913682-65913701 None:intergenic 40.0%
GTTCGACAACAAGTACATAG+TGG - Chr3:65914477-65914496 MsG0380015152.01.T01:intron 40.0%
GTTTGTGAATCAAACAGAGG+AGG + Chr3:65911094-65911113 None:intergenic 40.0%
TAAAAAAGGCAGCAGAAGAC+AGG + Chr3:65913210-65913229 None:intergenic 40.0%
TAACAATGCGATGTTGCAAG+TGG - Chr3:65914799-65914818 MsG0380015152.01.T01:intron 40.0%
TAGCCCCTATAGGTGTTAAA+GGG - Chr3:65913674-65913693 MsG0380015152.01.T01:intron 40.0%
TAGCGTATGGTTCGTTGTTA+AGG - Chr3:65915187-65915206 MsG0380015152.01.T01:intron 40.0%
TATGCATGTTTGGTATCTGC+CGG + Chr3:65914671-65914690 None:intergenic 40.0%
TATGTGGTAGTATCTTCGGA+CGG - Chr3:65913172-65913191 MsG0380015152.01.T01:intron 40.0%
TATTCAGCTCCCTTCATGTT+AGG + Chr3:65915533-65915552 None:intergenic 40.0%
TCCAGTACCTTTCCTTCATT+TGG + Chr3:65912738-65912757 None:intergenic 40.0%
TCGAGAACTTGAATACCTTG+TGG + Chr3:65911672-65911691 None:intergenic 40.0%
TCTACATTTGAAAGCAGCAG+TGG - Chr3:65915229-65915248 MsG0380015152.01.T01:intron 40.0%
TGAACATCAACTCTAGCAGT+AGG + Chr3:65913268-65913287 None:intergenic 40.0%
TGATATAGATTGTGGAGGTG+GGG - Chr3:65912620-65912639 MsG0380015152.01.T01:intron 40.0%
TGATGAACAAACTTTGCAGG+TGG - Chr3:65913705-65913724 MsG0380015152.01.T01:intron 40.0%
TGCTAAACCGATCATAACTC+TGG + Chr3:65913855-65913874 None:intergenic 40.0%
TTACGGTGACATTCAATGAG+AGG + Chr3:65914050-65914069 None:intergenic 40.0%
TTGTGGACCTCAATTTCACA+GGG + Chr3:65915948-65915967 None:intergenic 40.0%
TTTGTGGACCTCAATTTCAC+AGG + Chr3:65915949-65915968 None:intergenic 40.0%
! ATGTAAGGGCACAACATCAT+GGG - Chr3:65911693-65911712 MsG0380015152.01.T01:intron 40.0%
! CCTGCAAAGTTTGTTCATCA+AGG + Chr3:65913705-65913724 None:intergenic 40.0%
! GGAATCATAAGCTTTGTGTC+AGG + Chr3:65913004-65913023 None:intergenic 40.0%
! GTAGTGTCCCTAGATTGTTT+TGG - Chr3:65913330-65913349 MsG0380015152.01.T01:intron 40.0%
! GTTGGAATTTTGGATGGGAT+GGG - Chr3:65912022-65912041 MsG0380015152.01.T01:intron 40.0%
! TCCAAATGAAGGAAAGGTAC+TGG - Chr3:65912734-65912753 MsG0380015152.01.T01:intron 40.0%
! TTCACCGCAGAAACTTTTCA+CGG - Chr3:65914243-65914262 MsG0380015152.01.T01:intron 40.0%
!! AAAATCATGTTGGCTCACAG+TGG - Chr3:65914643-65914662 MsG0380015152.01.T01:CDS 40.0%
!! GTAGCAGGTTGTTAGTTTGT+AGG - Chr3:65913069-65913088 MsG0380015152.01.T01:intron 40.0%
!! TGCCACTCATTTGTTTCTGT+CGG + Chr3:65914220-65914239 None:intergenic 40.0%
!!! CTCTAGTTTTTGAGTGTAGC+AGG - Chr3:65913054-65913073 MsG0380015152.01.T01:intron 40.0%
!!! GTCTTCTGCTGCCTTTTTTA+TGG - Chr3:65913210-65913229 MsG0380015152.01.T01:intron 40.0%
AACTCAGTTTCAGCCTCTTC+AGG - Chr3:65911554-65911573 MsG0380015152.01.T01:intron 45.0%
AAGGCTTATCCCACTAAGTG+GGG - Chr3:65912421-65912440 MsG0380015152.01.T01:intron 45.0%
ACACTGCCATATTGTCCAAG+TGG - Chr3:65914919-65914938 MsG0380015152.01.T01:CDS 45.0%
ACAGAGGAGGAAGAAGAGAA+AGG + Chr3:65911081-65911100 None:intergenic 45.0%
ACCCGAGACGAATTCAGAAT+TGG + Chr3:65913451-65913470 None:intergenic 45.0%
ACTTGCAACCTTACCATGAG+CGG + Chr3:65911726-65911745 None:intergenic 45.0%
AGCCCCTATAGGTGTTAAAG+GGG - Chr3:65913675-65913694 MsG0380015152.01.T01:intron 45.0%
AGTTACTGTGCTCAAGCTTC+AGG - Chr3:65911844-65911863 MsG0380015152.01.T01:intron 45.0%
ATAGCAAGGCTAACATAGGC+AGG - Chr3:65912532-65912551 MsG0380015152.01.T01:intron 45.0%
ATATTACACCCCCTTCTGGA+TGG - Chr3:65913995-65914014 MsG0380015152.01.T01:intron 45.0%
ATCCCAAGGCTTCTTTCACT+TGG + Chr3:65915342-65915361 None:intergenic 45.0%
ATTGACCCATCACACAAGCT+AGG + Chr3:65913419-65913438 None:intergenic 45.0%
CAACCAGAAAACTCTCGCTA+AGG + Chr3:65912913-65912932 None:intergenic 45.0%
CAAGGCTTATCCCACTAAGT+GGG - Chr3:65912420-65912439 MsG0380015152.01.T01:intron 45.0%
CACAACTCTCCTTGTTCGTT+CGG - Chr3:65911435-65911454 MsG0380015152.01.T01:intron 45.0%
CAGATTCTTCCTCATCCACA+AGG - Chr3:65911654-65911673 MsG0380015152.01.T01:intron 45.0%
GAAACTTGAGGATGAGGATG+AGG + Chr3:65911627-65911646 None:intergenic 45.0%
GAAATTCTTTCAGGCTGGTG+AGG - Chr3:65915700-65915719 MsG0380015152.01.T01:intron 45.0%
GAATGATACCGCTCATGGTA+AGG - Chr3:65911715-65911734 MsG0380015152.01.T01:intron 45.0%
GACACATGGCATAACACCAT+TGG - Chr3:65910859-65910878 MsG0380015152.01.T01:three_prime_UTR 45.0%
GAGGATGAAACCCTTTCAGA+TGG - Chr3:65915743-65915762 MsG0380015152.01.T01:intron 45.0%
GATCTTAAAAGGAGCCAGGA+GGG - Chr3:65913727-65913746 MsG0380015152.01.T01:intron 45.0%
GATGTAGAGTTGTGTGCTTC+TGG - Chr3:65913288-65913307 MsG0380015152.01.T01:intron 45.0%
GGAAGGGGATTTGGCTAATT+TGG - Chr3:65912664-65912683 MsG0380015152.01.T01:intron 45.0%
GTCCAAGTGAAAGAAGCCTT+GGG - Chr3:65915337-65915356 MsG0380015152.01.T01:intron 45.0%
TAAACAGCTCACACCTTCCT+TGG + Chr3:65912101-65912120 None:intergenic 45.0%
TCTGCCGTGAAAAGTTTCTG+CGG + Chr3:65914250-65914269 None:intergenic 45.0%
TGTATGCTTTGCAATGGTGC+AGG + Chr3:65910948-65910967 None:intergenic 45.0%
TGTTTGGACAGGTAAGGAGT+GGG - Chr3:65912860-65912879 MsG0380015152.01.T01:CDS 45.0%
TTCTGAATTCGTCTCGGGTT+CGG - Chr3:65913452-65913471 MsG0380015152.01.T01:intron 45.0%
TTGACCCATCACACAAGCTA+GGG + Chr3:65913418-65913437 None:intergenic 45.0%
! AACTCCCTAGCTTGTGTGAT+GGG - Chr3:65913411-65913430 MsG0380015152.01.T01:intron 45.0%
! AAGTTATATGTCGGTTGCCG+AGG - Chr3:65912464-65912483 MsG0380015152.01.T01:intron 45.0%
! ACACAACCTCTCCTTTTACC+CGG - Chr3:65912491-65912510 MsG0380015152.01.T01:intron 45.0%
! AGTCCTTAGCGAGAGTTTTC+TGG - Chr3:65912907-65912926 MsG0380015152.01.T01:CDS 45.0%
! ATCCAGAAGGGGGTGTAATA+TGG + Chr3:65913996-65914015 None:intergenic 45.0%
! ATCTCTGGCGAGGTTTTTAC+TGG - Chr3:65914147-65914166 MsG0380015152.01.T01:intron 45.0%
! ATGGAGATGGGTTTGAGTAG+AGG - Chr3:65912788-65912807 MsG0380015152.01.T01:intron 45.0%
! CATGTAAGGGCACAACATCA+TGG - Chr3:65911692-65911711 MsG0380015152.01.T01:intron 45.0%
! GGTTGGAATTTTGGATGGGA+TGG - Chr3:65912021-65912040 MsG0380015152.01.T01:intron 45.0%
! GTGCAGGGCAGTTTCAATTT+TGG - Chr3:65913148-65913167 MsG0380015152.01.T01:CDS 45.0%
! TAACTCCCTAGCTTGTGTGA+TGG - Chr3:65913410-65913429 MsG0380015152.01.T01:intron 45.0%
! TCTCTGGCGAGGTTTTTACT+GGG - Chr3:65914148-65914167 MsG0380015152.01.T01:intron 45.0%
!! TCATCGACTTAGCTAGCTGA+GGG + Chr3:65915787-65915806 None:intergenic 45.0%
!! TTAGCCTTGCTATGCATAGC+TGG + Chr3:65912525-65912544 None:intergenic 45.0%
!! TTCATCGACTTAGCTAGCTG+AGG + Chr3:65915788-65915807 None:intergenic 45.0%
!!! CTTGGTGTCATTTTGGCTAC+AGG - Chr3:65911794-65911813 MsG0380015152.01.T01:intron 45.0%
AACTGCCCTGCACTAAAACG+AGG + Chr3:65913141-65913160 None:intergenic 50.0%
ACAACGGCTATTTGAGCCCA+AGG - Chr3:65910889-65910908 MsG0380015152.01.T01:three_prime_UTR 50.0%
ACTGCCTTCTCTATGAGTGG+AGG - Chr3:65912822-65912841 MsG0380015152.01.T01:intron 50.0%
AGCTGCTAACACATCCTCCA+AGG - Chr3:65912081-65912100 MsG0380015152.01.T01:intron 50.0%
AGTAAAAGCTTGTGGGACCC+AGG - Chr3:65910837-65910856 MsG0380015152.01.T01:three_prime_UTR 50.0%
ATAGATTGTGGAGGTGGGGT+GGG - Chr3:65912624-65912643 MsG0380015152.01.T01:intron 50.0%
ATGCGGGAACAGATCATCTC+TGG - Chr3:65914132-65914151 MsG0380015152.01.T01:intron 50.0%
CATGGGAATGATACCGCTCA+TGG - Chr3:65911710-65911729 MsG0380015152.01.T01:intron 50.0%
CCAAGGCTTATCCCACTAAG+TGG - Chr3:65912419-65912438 MsG0380015152.01.T01:intron 50.0%
CCACTTAGTGGGATAAGCCT+TGG + Chr3:65912422-65912441 None:intergenic 50.0%
CCTTCTCTATGAGTGGAGGT+GGG - Chr3:65912826-65912845 MsG0380015152.01.T01:intron 50.0%
CTCACTGCCTTCTCTATGAG+TGG - Chr3:65912819-65912838 MsG0380015152.01.T01:intron 50.0%
CTGTTTGGACAGGTAAGGAG+TGG - Chr3:65912859-65912878 MsG0380015152.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG - Chr3:65912425-65912444 MsG0380015152.01.T01:intron 50.0%
GAGACCAGCTATGCATAGCA+AGG - Chr3:65912518-65912537 MsG0380015152.01.T01:intron 50.0%
GCTAACACATCCTCCAAGGA+AGG - Chr3:65912085-65912104 MsG0380015152.01.T01:intron 50.0%
GGATCTTAAAAGGAGCCAGG+AGG - Chr3:65913726-65913745 MsG0380015152.01.T01:intron 50.0%
GGTCCAAGTGAAAGAAGCCT+TGG - Chr3:65915336-65915355 MsG0380015152.01.T01:intron 50.0%
GGTGGATCTTAAAAGGAGCC+AGG - Chr3:65913723-65913742 MsG0380015152.01.T01:intron 50.0%
GTTCACACTGCAGTGTGGTT+GGG - Chr3:65913114-65913133 MsG0380015152.01.T01:CDS 50.0%
TATAGATTGTGGAGGTGGGG+TGG - Chr3:65912623-65912642 MsG0380015152.01.T01:intron 50.0%
TATAGCCGACCCCACTTAGT+GGG + Chr3:65912433-65912452 None:intergenic 50.0%
TCAGTTTCAGCCTCTTCAGG+AGG - Chr3:65911557-65911576 MsG0380015152.01.T01:intron 50.0%
TGAAAGCAGCAGTGGTTCCT+TGG - Chr3:65915237-65915256 MsG0380015152.01.T01:intron 50.0%
TGAGGATGAGGATGAGGATG+AGG + Chr3:65911621-65911640 None:intergenic 50.0%
TGCCATATTACACCCCCTTC+TGG - Chr3:65913991-65914010 MsG0380015152.01.T01:intron 50.0%
TGGGCTCAAATAGCCGTTGT+GGG + Chr3:65910889-65910908 None:intergenic 50.0%
TGTTCACACTGCAGTGTGGT+TGG - Chr3:65913113-65913132 MsG0380015152.01.T01:CDS 50.0%
TTCACACTGCAGTGTGGTTG+GGG - Chr3:65913115-65913134 MsG0380015152.01.T01:CDS 50.0%
TTGGGCTCAAATAGCCGTTG+TGG + Chr3:65910890-65910909 None:intergenic 50.0%
! AATTCGTCTCGGGTTCGGTT+TGG - Chr3:65913457-65913476 MsG0380015152.01.T01:intron 50.0%
! AGCTTTGTGTCAGGGTCAAC+AGG + Chr3:65912995-65913014 None:intergenic 50.0%
! CACAACCTCTCCTTTTACCC+GGG - Chr3:65912492-65912511 MsG0380015152.01.T01:intron 50.0%
! GGTGTTATGCCATGTGTCCT+GGG + Chr3:65910857-65910876 None:intergenic 50.0%
! TCTTCGGACGGCAGTTTTTG+CGG - Chr3:65913184-65913203 MsG0380015152.01.T01:intron 50.0%
! TTCAGGCTGGTGAGGTACTA+TGG - Chr3:65915708-65915727 MsG0380015152.01.T01:intron 50.0%
! TTGGTGTTCACACTGCAGTG+TGG - Chr3:65913109-65913128 MsG0380015152.01.T01:intron 50.0%
!! ATGTTGGCTCACAGTGGTTC+CGG - Chr3:65914649-65914668 MsG0380015152.01.T01:CDS 50.0%
!! TGGTGTTATGCCATGTGTCC+TGG + Chr3:65910858-65910877 None:intergenic 50.0%
ACAGCTCACACCTTCCTTGG+AGG + Chr3:65912098-65912117 None:intergenic 55.0%
AGCATGTTTCTCCACCCTCC+TGG + Chr3:65913744-65913763 None:intergenic 55.0%
AGGGGAGAACCGAACGAACA+AGG + Chr3:65911447-65911466 None:intergenic 55.0%
AGGGTTTCATCCTCCCTCTG+TGG + Chr3:65915737-65915756 None:intergenic 55.0%
AGGTAAGGAGTGGGTGAGGA+GGG - Chr3:65912869-65912888 MsG0380015152.01.T01:CDS 55.0%
AGGTACTATGGACCCCACAG+AGG - Chr3:65915720-65915739 MsG0380015152.01.T01:intron 55.0%
CACCATTGGACACCCCACAA+CGG - Chr3:65910873-65910892 MsG0380015152.01.T01:three_prime_UTR 55.0%
CCCACCTCCACTCATAGAGA+AGG + Chr3:65912829-65912848 None:intergenic 55.0%
CTATAGCCGACCCCACTTAG+TGG + Chr3:65912434-65912453 None:intergenic 55.0%
CTTAAAAGGAGCCAGGAGGG+TGG - Chr3:65913730-65913749 MsG0380015152.01.T01:intron 55.0%
GCCTTCTCTATGAGTGGAGG+TGG - Chr3:65912825-65912844 MsG0380015152.01.T01:intron 55.0%
GGAACAGATCATCTCTGGCG+AGG - Chr3:65914137-65914156 MsG0380015152.01.T01:intron 55.0%
GGAGAGGTTGTGTTAGGCCT+CGG + Chr3:65912484-65912503 None:intergenic 55.0%
GGGCTCAAATAGCCGTTGTG+GGG + Chr3:65910888-65910907 None:intergenic 55.0%
GGGTTTCATCCTCCCTCTGT+GGG + Chr3:65915736-65915755 None:intergenic 55.0%
GGTACTATGGACCCCACAGA+GGG - Chr3:65915721-65915740 MsG0380015152.01.T01:intron 55.0%
GGTTGCTGCTGTCAGTCTGT+GGG - Chr3:65912928-65912947 MsG0380015152.01.T01:CDS 55.0%
GGTTTCATCCTCCCTCTGTG+GGG + Chr3:65915735-65915754 None:intergenic 55.0%
GTGCTTCTGGTCTGCAGCTT+TGG - Chr3:65913301-65913320 MsG0380015152.01.T01:intron 55.0%
TCAAGCCCGGGTAAAAGGAG+AGG + Chr3:65912500-65912519 None:intergenic 55.0%
TCCCATGACACCTCCTGAAG+AGG + Chr3:65911570-65911589 None:intergenic 55.0%
TGGTCTCAAGCCCGGGTAAA+AGG + Chr3:65912505-65912524 None:intergenic 55.0%
TGGTTGCTGCTGTCAGTCTG+TGG - Chr3:65912927-65912946 MsG0380015152.01.T01:CDS 55.0%
! CTGGCGAGGTTTTTACTGGG+TGG - Chr3:65914151-65914170 MsG0380015152.01.T01:intron 55.0%
! TGCATAGCTGGTCTCAAGCC+CGG + Chr3:65912513-65912532 None:intergenic 55.0%
!! AGCCTCTTCAGGAGGTGTCA+TGG - Chr3:65911565-65911584 MsG0380015152.01.T01:intron 55.0%
!! GAGGAGGGGTACGTTTTGGT+TGG - Chr3:65912884-65912903 MsG0380015152.01.T01:CDS 55.0%
!! GCCTCTTCAGGAGGTGTCAT+GGG - Chr3:65911566-65911585 MsG0380015152.01.T01:intron 55.0%
!! TCTTCAGGAGGTGTCATGGG+AGG - Chr3:65911569-65911588 MsG0380015152.01.T01:intron 55.0%
!! TGGGGCCTCGTTTTAGTGCA+GGG - Chr3:65913133-65913152 MsG0380015152.01.T01:CDS 55.0%
!! TTGGGGCCTCGTTTTAGTGC+AGG - Chr3:65913132-65913151 MsG0380015152.01.T01:CDS 55.0%
ACTATGGACCCCACAGAGGG+AGG - Chr3:65915724-65915743 MsG0380015152.01.T01:intron 60.0%
CAGGTAAGGAGTGGGTGAGG+AGG - Chr3:65912868-65912887 MsG0380015152.01.T01:CDS 60.0%
CTTGTGGGACCCAGGACACA+TGG - Chr3:65910845-65910864 MsG0380015152.01.T01:three_prime_UTR 60.0%
GGACAGGTAAGGAGTGGGTG+AGG - Chr3:65912865-65912884 MsG0380015152.01.T01:CDS 60.0%
GGTAAGGAGTGGGTGAGGAG+GGG - Chr3:65912870-65912889 MsG0380015152.01.T01:CDS 60.0%
TGCTGCTGTCAGTCTGTGGG+AGG - Chr3:65912931-65912950 MsG0380015152.01.T01:CDS 60.0%
! AGCCGTTGTGGGGTGTCCAA+TGG + Chr3:65910878-65910897 None:intergenic 60.0%
! GCATAGCTGGTCTCAAGCCC+GGG + Chr3:65912512-65912531 None:intergenic 60.0%
!! GGGTGAGGAGGGGTACGTTT+TGG - Chr3:65912880-65912899 MsG0380015152.01.T01:CDS 60.0%
TGTGGAGGTGGGGTGGGTAG+AGG - Chr3:65912630-65912649 MsG0380015152.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65910745 65915993 65910745 ID=MsG0380015152.01;Name=MsG0380015152.01
Chr3 mRNA 65910745 65915993 65910745 ID=MsG0380015152.01.T01;Parent=MsG0380015152.01;Name=MsG0380015152.01.T01;_AED=0.50;_eAED=0.54;_QI=111|0.71|0.62|1|1|1|8|176|297
Chr3 exon 65910745 65911025 65910745 ID=MsG0380015152.01.T01:exon:22909;Parent=MsG0380015152.01.T01
Chr3 exon 65911131 65911247 65911131 ID=MsG0380015152.01.T01:exon:22908;Parent=MsG0380015152.01.T01
Chr3 exon 65912240 65912323 65912240 ID=MsG0380015152.01.T01:exon:22907;Parent=MsG0380015152.01.T01
Chr3 exon 65912850 65913014 65912850 ID=MsG0380015152.01.T01:exon:22906;Parent=MsG0380015152.01.T01
Chr3 exon 65913112 65913167 65913112 ID=MsG0380015152.01.T01:exon:22905;Parent=MsG0380015152.01.T01
Chr3 exon 65914632 65914716 65914632 ID=MsG0380015152.01.T01:exon:22904;Parent=MsG0380015152.01.T01
Chr3 exon 65914873 65915162 65914873 ID=MsG0380015152.01.T01:exon:22903;Parent=MsG0380015152.01.T01
Chr3 exon 65915891 65915993 65915891 ID=MsG0380015152.01.T01:exon:22902;Parent=MsG0380015152.01.T01
Chr3 five_prime_UTR 65915891 65915993 65915891 ID=MsG0380015152.01.T01:five_prime_utr;Parent=MsG0380015152.01.T01
Chr3 five_prime_UTR 65915155 65915162 65915155 ID=MsG0380015152.01.T01:five_prime_utr;Parent=MsG0380015152.01.T01
Chr3 CDS 65914873 65915154 65914873 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65914632 65914716 65914632 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65913112 65913167 65913112 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65912850 65913014 65912850 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65912240 65912323 65912240 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65911131 65911247 65911131 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 CDS 65910921 65911025 65910921 ID=MsG0380015152.01.T01:cds;Parent=MsG0380015152.01.T01
Chr3 three_prime_UTR 65910745 65910920 65910745 ID=MsG0380015152.01.T01:three_prime_utr;Parent=MsG0380015152.01.T01
Gene Sequence

>MsG0380015152.01.T01

ATGGGAGGAAGTTTCTTCAATTCAGATTCTTCTTCCTCATCCTCATCCTCATCCTCAAGTTTCTTCAGTTCAGATTCTTCCTCATCCACAAGGTATTCAAGTTCTCGACATGTAAGGGCACAACATCATGGGAATGATACCGCTCATGGTAAGGTTGCAAGTGATGATGAAATTGAAACATGGTTCTTGTTTTTCTTCTTGGTACTTGTACTTGGTGTCATTTTGGCTACAGGTCTTTGTAAAGAAATCGATAAGAATACAGTTACTGTGCTCAAGCTTCAGGTTGGAATTTTGGATGGGATGGGATGTACAATTCAAAGGGATCTGACTAGGATTGCAGAAGCTGCTAACACATCCTCCAAGGAAGAGACAATACAAACTTTAGAGAAACATCATCGTTACTGTAAAGCAGGATATTCATCTGTGGATCTTAAAAGGAGCCAGGAGGGTGGAGAAACATGCTATAACCAACTATCAATTGAAGAAAGGGAAAAATTTGATGGAGAGACATTAGTTAACTTGAGCAACAACAATAAGACACGTATAAGAAGCCAGAGTTATGATCGGTTTAGCAATGAATATTCCACGATTGATGTAGAAAAGAGTTCTGAAGAAACCGAGAAATTTGAAAAAAAGAAGCTTCGCAGTGGGTTCGACAACAAGTACATAGTGGTAACAATATTGGTAGCTACTAAAGGAGCACATAAGCTACCTAACATGAAGGGAGCTGAATATTTAAAGGAAGCTTTGCAAAAACTTACATCCCTTCTCTCCAGCAAAAATTTATTAGCTGGTGAGGTACTATGGACCCCACAGAGGGAGGATGAAACCCTTTCAGATGGAAAACTACTTGAAGATTACCCTCAGCTAGCTAAGTCGATGAAATATGAATAA
Protein sequence

>MsG0380015152.01.T01

MGGSFFNSDSSSSSSSSSSSFFSSDSSSSTRYSSSRHVRAQHHGNDTAHGKVASDDEIETWFLFFFLVLVLGVILATGLCKEIDKNTVTVLKLQVGILDGMGCTIQRDLTRIAEAANTSSKEETIQTLEKHHRYCKAGYSSVDLKRSQEGGETCYNQLSIEEREKFDGETLVNLSNNNKTRIRSQSYDRFSNEYSTIDVEKSSEETEKFEKKKLRSGFDNKYIVVTILVATKGAHKLPNMKGAEYLKEALQKLTSLLSSKNLLAGEVLWTPQREDETLSDGKLLEDYPQLAKSMKYE*