AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015173.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015173.01.T01 MTR_3g064310 94.470 217 9 2 2 215 1 217 1.23e-143 399
MsG0380015173.01.T01 MTR_5g076480 62.150 214 75 3 3 215 1 209 1.96e-89 262
MsG0380015173.01.T01 MTR_0160s0040 33.537 164 107 2 36 198 14 176 2.36e-32 116
MsG0380015173.01.T01 MTR_2g026530 30.488 164 104 3 41 194 8 171 3.04e-17 76.6
MsG0380015173.01.T01 MTR_2g026530 30.488 164 104 3 41 194 28 191 3.25e-17 77.0
MsG0380015173.01.T01 MTR_0004s0210 28.767 146 94 4 42 182 6 146 9.58e-15 69.3
MsG0380015173.01.T01 MTR_0693s0030 24.828 145 92 2 60 194 36 173 3.12e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015173.01.T01 AT1G17200 64.375 160 55 1 41 198 30 189 3.41e-71 216
MsG0380015173.01.T01 AT3G14380 49.367 158 78 2 42 197 21 178 4.24e-44 145
MsG0380015173.01.T01 AT1G17200 55.140 107 45 2 106 210 1 106 2.73e-34 118
MsG0380015173.01.T01 AT5G54980 37.059 170 99 4 41 207 29 193 7.06e-27 102
MsG0380015173.01.T01 AT4G16442 31.098 164 103 3 41 194 8 171 9.34e-16 72.8
MsG0380015173.01.T01 AT1G03700 32.331 133 80 4 59 186 24 151 9.66e-14 67.0
MsG0380015173.01.T01 AT2G35760 27.807 187 119 4 33 203 13 199 1.30e-12 64.7
MsG0380015173.01.T01 AT4G03540 30.328 122 75 4 61 177 26 142 2.50e-11 60.5
MsG0380015173.01.T01 AT4G15630 28.319 113 79 1 80 190 77 189 2.67e-11 60.8

Find 69 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCAGCTTGTGGCTCTTT+TGG 0.209207 3:-66224498 MsG0380015173.01.T01:CDS
ACAATGACCTTGGAGCTTTC+AGG 0.215827 3:-66227021 MsG0380015173.01.T01:intron
TGGTCATTGCCTGTAGTATT+AGG 0.217265 3:+66224351 None:intergenic
CCCTAATGTTTGTTGTGTTA+TGG 0.243875 3:-66224299 MsG0380015173.01.T01:three_prime_UTR
CCTAATGTTTGTTGTGTTAT+GGG 0.257198 3:-66224298 MsG0380015173.01.T01:three_prime_UTR
GATGCAACGTTGTAGGTATT+TGG 0.264038 3:-66225534 MsG0380015173.01.T01:intron
ATGCAACGTTGTAGGTATTT+GGG 0.285227 3:-66225533 MsG0380015173.01.T01:intron
AAGCTTGTAAGAGGAAATTA+TGG 0.310588 3:+66224404 None:intergenic
ATACATACATCCAATATTAT+TGG 0.317854 3:+66224229 None:intergenic
TTTATATATAGCGTGCTTCA+TGG 0.330534 3:-66224184 MsG0380015173.01.T01:three_prime_UTR
GTCCCACTCTGCTTCGTGCT+TGG 0.355543 3:-66225448 MsG0380015173.01.T01:CDS
CCCATAACACAACAAACATT+AGG 0.360827 3:+66224298 None:intergenic
CCATAACACAACAAACATTA+GGG 0.361502 3:+66224299 None:intergenic
GTAGCCATGGCCAATAATAT+TGG 0.363168 3:-66224239 MsG0380015173.01.T01:three_prime_UTR
AATTCCGAAGAGAATGATTA+TGG 0.368832 3:-66227055 MsG0380015173.01.T01:CDS
GTAGTATTAGGGCAACTTGC+TGG 0.376513 3:+66224363 None:intergenic
TTCCTGCGTCTTCTTCCAAT+TGG 0.380100 3:-66227112 MsG0380015173.01.T01:CDS
GCACCTGCTGCTGCTACAAC+TGG 0.405372 3:-66227184 MsG0380015173.01.T01:CDS
AGCACGAAGCAGAGTGGGAC+GGG 0.416149 3:+66225451 None:intergenic
CACATTGCTCCAGCTTTCAA+TGG 0.421348 3:-66224330 MsG0380015173.01.T01:CDS
ATATAAAATAAACAAAGGTT+TGG 0.422014 3:+66224200 None:intergenic
GAAAGCTCCAAGGTCATTGT+AGG 0.431102 3:+66227024 None:intergenic
CAACAACGACAGCAGAAAGT+AGG 0.445202 3:+66225480 None:intergenic
GGTCATTGCCTGTAGTATTA+GGG 0.451380 3:+66224352 None:intergenic
AGCTACAAGGTCTCCAATGC+AGG 0.451468 3:-66227215 MsG0380015173.01.T01:CDS
ATTGCTGAAAAGCTTGTAAG+AGG 0.453945 3:+66224395 None:intergenic
GCTGCTACACAGAGACCAAT+TGG 0.453971 3:+66227097 None:intergenic
ATGGAGACAGTGCAACAGTA+TGG 0.454804 3:-66224521 MsG0380015173.01.T01:CDS
TCTCCAGTTGTAGCAGCAGC+AGG 0.461731 3:+66227181 None:intergenic
AGGTATTTGGGGCATGCAAA+TGG 0.462460 3:-66225521 MsG0380015173.01.T01:CDS
GTCTCCAATGCAGGTTATGA+TGG 0.463901 3:-66227206 MsG0380015173.01.T01:CDS
CACCTCCATTGATGAAGCTC+CGG 0.491278 3:+66224560 None:intergenic
GAGCGCCGGAGCTTCATCAA+TGG 0.504661 3:-66224565 MsG0380015173.01.T01:CDS
ATGAAAGCATAGAAAGGTAC+TGG 0.504880 3:-66227340 MsG0380015173.01.T01:five_prime_UTR
GTAAGCTAGCCATTGAAAGC+TGG 0.510655 3:+66224321 None:intergenic
TAGTATTAGGGCAACTTGCT+GGG 0.513690 3:+66224364 None:intergenic
AACAACGACAGCAGAAAGTA+GGG 0.514928 3:+66225481 None:intergenic
TGCTACAACTGGAGAGGAGT+TGG 0.520723 3:-66227173 MsG0380015173.01.T01:CDS
CACTGTCTCCATTCTCAGCT+AGG 0.525126 3:+66224532 None:intergenic
TCTGTTTCCTACAATGACCT+TGG 0.525544 3:-66227031 MsG0380015173.01.T01:CDS
AGAGCCATAATCATTCTCTT+CGG 0.527126 3:+66227051 None:intergenic
GTGGTGTACCTAGCTGAGAA+TGG 0.532841 3:-66224540 MsG0380015173.01.T01:CDS
CGGAGCTTCATCAATGGAGG+TGG 0.536593 3:-66224559 MsG0380015173.01.T01:CDS
ACACAATATAGTGATGATGA+TGG 0.543875 3:-66227263 MsG0380015173.01.T01:exon
GGTGCCATCATAACCTGCAT+TGG 0.545200 3:+66227202 None:intergenic
GCAAGTTGCCCTAATACTAC+AGG 0.548179 3:-66224360 MsG0380015173.01.T01:CDS
GCACGAAGCAGAGTGGGACG+GGG 0.554883 3:+66225452 None:intergenic
GTACTGTAGTTTCAGCTACA+AGG 0.558505 3:-66227228 MsG0380015173.01.T01:CDS
ACATCCAATATTATTGGCCA+TGG 0.559135 3:+66224235 None:intergenic
GTCCAAGCACGAAGCAGAGT+GGG 0.571236 3:+66225446 None:intergenic
GGGAAAATGAAAGCATAGAA+AGG 0.577821 3:-66227346 None:intergenic
TTTATGACTCATAGTAGCCA+TGG 0.581739 3:-66224252 MsG0380015173.01.T01:three_prime_UTR
AAGCACGAAGCAGAGTGGGA+CGG 0.590676 3:+66225450 None:intergenic
CGCCGGAGCTTCATCAATGG+AGG 0.596052 3:-66224562 MsG0380015173.01.T01:CDS
ATGATGATGGAGAAAGGTAC+TGG 0.596215 3:-66227250 MsG0380015173.01.T01:CDS
TGTCTCAGCAGTGCGTAGGA+AGG 0.600277 3:+66227135 None:intergenic
CACGAAGCAGAGTGGGACGG+GGG 0.600608 3:+66225453 None:intergenic
AAAAGGGAGGAACCTGGTCA+AGG 0.601094 3:+66225414 None:intergenic
ATAGTGATGATGATGGAGAA+AGG 0.601228 3:-66227256 MsG0380015173.01.T01:exon
TGCAACGTTGTAGGTATTTG+GGG 0.603984 3:-66225532 MsG0380015173.01.T01:intron
ATATATACCTGAAAGCTCCA+AGG 0.630274 3:+66227014 None:intergenic
GGAATGTCTCAGCAGTGCGT+AGG 0.633276 3:+66227131 None:intergenic
TGCTGCTGCTACAACTGGAG+AGG 0.641197 3:-66227179 MsG0380015173.01.T01:CDS
GCTATATATAAAATAAACAA+AGG 0.643106 3:+66224195 None:intergenic
GACCAATTGGAAGAAGACGC+AGG 0.644716 3:+66227110 None:intergenic
AGTCCAAGCACGAAGCAGAG+TGG 0.657174 3:+66225445 None:intergenic
ACAACTGGAGAGGAGTTGGA+AGG 0.657284 3:-66227169 MsG0380015173.01.T01:CDS
CATTGAAAGCTGGAGCAATG+TGG 0.700472 3:+66224331 None:intergenic
ACAGTATGGAACTCAGCTTG+TGG 0.703926 3:-66224507 MsG0380015173.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTTTTATTTTTTT+GGG + Chr3:66224932-66224951 None:intergenic 0.0%
!!! TAATTTATTTTTTATTTTTT+TGG + Chr3:66224933-66224952 None:intergenic 0.0%
!!! ACAAAATATTATTTTTTTTG+AGG - Chr3:66226125-66226144 MsG0380015173.01.T01:intron 10.0%
!!! CATATTTTTAATTGAAATTT+AGG + Chr3:66226667-66226686 None:intergenic 10.0%
!! ATATAAAATAAACAAAGGTT+TGG + Chr3:66227309-66227328 None:intergenic 15.0%
!! ATTTGAAAAAAACCATAAAA+TGG + Chr3:66225556-66225575 None:intergenic 15.0%
!! GAAAAATAATTTATAAACAG+TGG + Chr3:66225151-66225170 None:intergenic 15.0%
!! GCTATATATAAAATAAACAA+AGG + Chr3:66227314-66227333 None:intergenic 15.0%
!!! AGTAAAGTTTTTTTACTTTA+TGG - Chr3:66225580-66225599 MsG0380015173.01.T01:intron 15.0%
!!! TTTAGTTTTTTAGATTGTAA+CGG - Chr3:66224660-66224679 MsG0380015173.01.T01:intron 15.0%
!!! TTTATATGCTATTTTTAAGT+AGG - Chr3:66225486-66225505 MsG0380015173.01.T01:CDS 15.0%
!! ACTAATTTGATCTTACATAA+TGG + Chr3:66226548-66226567 None:intergenic 20.0%
!! ATACATACATCCAATATTAT+TGG + Chr3:66227280-66227299 None:intergenic 20.0%
!! TAAAATAGCGTTAGATATAT+AGG + Chr3:66226302-66226321 None:intergenic 20.0%
!! TAATTTATAAAACATGCCAA+TGG + Chr3:66226427-66226446 None:intergenic 20.0%
!! TATCTTTATAAGCTCAATTA+AGG - Chr3:66225379-66225398 MsG0380015173.01.T01:intron 20.0%
!! TCAATTAAAAATATGCTTAG+TGG - Chr3:66226672-66226691 MsG0380015173.01.T01:intron 20.0%
!! TGGCTAACTTTATTATTAAT+TGG + Chr3:66225079-66225098 None:intergenic 20.0%
!! TGTAATGATTTCTTTACAAT+AGG - Chr3:66226899-66226918 MsG0380015173.01.T01:intron 20.0%
!! TTAAGGATCTTTAAATTCTA+TGG - Chr3:66225396-66225415 MsG0380015173.01.T01:intron 20.0%
!!! AAAAATGTGTTGATTATTGA+CGG + Chr3:66226708-66226727 None:intergenic 20.0%
!!! AAAATCGTTTTGTAAAGTAA+AGG - Chr3:66225295-66225314 MsG0380015173.01.T01:intron 20.0%
!!! AATTTTGGTTAGTGATTTTT+TGG - Chr3:66225943-66225962 MsG0380015173.01.T01:intron 20.0%
!!! ATCAGTTGTATTTTTGTTTT+TGG + Chr3:66226510-66226529 None:intergenic 20.0%
!!! ATCATATCAGATTTTTGTAT+TGG - Chr3:66225255-66225274 MsG0380015173.01.T01:intron 20.0%
!!! TAATTCTTGATAATTTGACT+TGG - Chr3:66225895-66225914 MsG0380015173.01.T01:intron 20.0%
!!! TTGACTTGGAATATATATTT+TGG - Chr3:66225909-66225928 MsG0380015173.01.T01:intron 20.0%
!!! TTGGCATGTTTTATAAATTA+TGG - Chr3:66226427-66226446 MsG0380015173.01.T01:intron 20.0%
!!! TTGGTCAAACTAAATAATTT+TGG - Chr3:66225928-66225947 MsG0380015173.01.T01:intron 20.0%
! AAAATCGATGTGTAAAGTAA+AGG - Chr3:66225351-66225370 MsG0380015173.01.T01:intron 25.0%
! ACTAAAGAGAAATTCTTTCT+TGG + Chr3:66224646-66224665 None:intergenic 25.0%
! ATTAAAATAGAGTCAACAAG+TGG + Chr3:66225757-66225776 None:intergenic 25.0%
! ATTATTGAAATAGCAACACT+TGG + Chr3:66226760-66226779 None:intergenic 25.0%
! GGCAAATGAAATTAGAATTT+AGG - Chr3:66225856-66225875 MsG0380015173.01.T01:intron 25.0%
! TAAATAACAATCTCTAACAG+TGG + Chr3:66225099-66225118 None:intergenic 25.0%
! TAATCAGTAATCCAATTGAA+TGG - Chr3:66226220-66226239 MsG0380015173.01.T01:intron 25.0%
! TATTATGCTTTAGTCATTGA+TGG - Chr3:66225832-66225851 MsG0380015173.01.T01:intron 25.0%
! TTTAGTAGTTGGATTAAGAT+CGG + Chr3:66226614-66226633 None:intergenic 25.0%
! TTTGTTACAACTTTAGTAGT+TGG + Chr3:66226625-66226644 None:intergenic 25.0%
!! AATTCATTATATTTTGTGCG+TGG - Chr3:66226185-66226204 MsG0380015173.01.T01:intron 25.0%
!! GTAAAGGAGACTTTTTATAT+TGG - Chr3:66225311-66225330 MsG0380015173.01.T01:intron 25.0%
!! TTGATTAATGCACCATTTTA+TGG - Chr3:66225541-66225560 MsG0380015173.01.T01:intron 25.0%
!! TTTTATATCTGTGCAATTTG+TGG - Chr3:66226724-66226743 MsG0380015173.01.T01:intron 25.0%
!! TTTTCTTTACTTGTTTGAGT+AGG + Chr3:66224527-66224546 None:intergenic 25.0%
!! TTTTGGTCAATTTTGTCATA+AGG - Chr3:66227025-66227044 MsG0380015173.01.T01:CDS 25.0%
!!! ATTGTGTATTGTTTTTTGCT+TGG + Chr3:66224230-66224249 None:intergenic 25.0%
!!! CGATTTTGTAAACATTGATT+TGG + Chr3:66225282-66225301 None:intergenic 25.0%
AAGCTTGTAAGAGGAAATTA+TGG + Chr3:66227105-66227124 None:intergenic 30.0%
AATTCCGAAGAGAATGATTA+TGG - Chr3:66224451-66224470 MsG0380015173.01.T01:CDS 30.0%
ATGTCTTACCCTATTGAATT+TGG - Chr3:66225187-66225206 MsG0380015173.01.T01:intron 30.0%
ATTTACCCACCAAATTCAAT+AGG + Chr3:66225199-66225218 None:intergenic 30.0%
CCATAACACAACAAACATTA+GGG + Chr3:66227210-66227229 None:intergenic 30.0%
TAGCGTTAGATATATAGGAT+AGG + Chr3:66226297-66226316 None:intergenic 30.0%
TCCAATTGAATGGAGAAAAA+TGG - Chr3:66226230-66226249 MsG0380015173.01.T01:intron 30.0%
TGCTTGACAAAAAACAGTTT+CGG + Chr3:66226814-66226833 None:intergenic 30.0%
TGGAGAAAAATGGTACAAAA+TGG - Chr3:66226240-66226259 MsG0380015173.01.T01:intron 30.0%
TTTACCCACCAAATTCAATA+GGG + Chr3:66225198-66225217 None:intergenic 30.0%
TTTATATATAGCGTGCTTCA+TGG - Chr3:66227322-66227341 MsG0380015173.01.T01:five_prime_UTR 30.0%
! ACACAATATAGTGATGATGA+TGG - Chr3:66224243-66224262 MsG0380015173.01.T01:three_prime_UTR 30.0%
! ATTTTGTGTGTGAACAGAAA+AGG + Chr3:66226112-66226131 None:intergenic 30.0%
! GATATTAGTGTCTATCGATT+TGG + Chr3:66225238-66225257 None:intergenic 30.0%
! TTCTCTTTTTATAGTCGAAG+AGG - Chr3:66226350-66226369 MsG0380015173.01.T01:intron 30.0%
! TTTTGTGTGTGAACAGAAAA+GGG + Chr3:66226111-66226130 None:intergenic 30.0%
!! ACCATTTTTCTCCATTCAAT+TGG + Chr3:66226234-66226253 None:intergenic 30.0%
!! CCTAATGTTTGTTGTGTTAT+GGG - Chr3:66227208-66227227 MsG0380015173.01.T01:CDS 30.0%
!!! AGTTTTTTAGATTGTAACGG+TGG - Chr3:66224663-66224682 MsG0380015173.01.T01:intron 30.0%
!!! GTTAGTGATTTTTTGGTTGT+TGG - Chr3:66225950-66225969 MsG0380015173.01.T01:intron 30.0%
ACATCCAATATTATTGGCCA+TGG + Chr3:66227274-66227293 None:intergenic 35.0%
ACCAGTGGAAACAAAACTTA+CGG + Chr3:66224728-66224747 None:intergenic 35.0%
AGAGCCATAATCATTCTCTT+CGG + Chr3:66224458-66224477 None:intergenic 35.0%
ATATATACCTGAAAGCTCCA+AGG + Chr3:66224495-66224514 None:intergenic 35.0%
ATGCAACGTTGTAGGTATTT+GGG - Chr3:66225973-66225992 MsG0380015173.01.T01:intron 35.0%
ATTGCTGAAAAGCTTGTAAG+AGG + Chr3:66227114-66227133 None:intergenic 35.0%
CAAGATTGCACAGGATAAAT+GGG + Chr3:66225617-66225636 None:intergenic 35.0%
CCAAACATGAAATGAAACTC+AGG - Chr3:66226837-66226856 MsG0380015173.01.T01:intron 35.0%
CCCATAACACAACAAACATT+AGG + Chr3:66227211-66227230 None:intergenic 35.0%
CCTGAGTTTCATTTCATGTT+TGG + Chr3:66226840-66226859 None:intergenic 35.0%
CTTACCCTATTGAATTTGGT+GGG - Chr3:66225191-66225210 MsG0380015173.01.T01:intron 35.0%
GCTTGACAAAAAACAGTTTC+GGG + Chr3:66226813-66226832 None:intergenic 35.0%
TATGCTTTAGTCATTGATGG+TGG - Chr3:66225835-66225854 MsG0380015173.01.T01:intron 35.0%
TCTTACCCTATTGAATTTGG+TGG - Chr3:66225190-66225209 MsG0380015173.01.T01:intron 35.0%
TTTATGACTCATAGTAGCCA+TGG - Chr3:66227254-66227273 MsG0380015173.01.T01:exon 35.0%
! AAGTAGGTTTTTCTAACCTG+TGG - Chr3:66225502-66225521 MsG0380015173.01.T01:CDS 35.0%
! ACATACATAATTTTGAGCGC+CGG - Chr3:66226927-66226946 MsG0380015173.01.T01:intron 35.0%
! CGCTTTTAGTGGTATGTTTA+TGG + Chr3:66226402-66226421 None:intergenic 35.0%
!! ATAGTGATGATGATGGAGAA+AGG - Chr3:66224250-66224269 MsG0380015173.01.T01:three_prime_UTR 35.0%
!! CATCTGATTTGATTTGTGCA+TGG - Chr3:66224767-66224786 MsG0380015173.01.T01:intron 35.0%
!! CCCTAATGTTTGTTGTGTTA+TGG - Chr3:66227207-66227226 MsG0380015173.01.T01:CDS 35.0%
AACAACGACAGCAGAAAGTA+GGG + Chr3:66226028-66226047 None:intergenic 40.0%
ACCTGTGGTTGCAGATAATA+AGG - Chr3:66225517-66225536 MsG0380015173.01.T01:CDS 40.0%
ATAGGGTAAGACATGATGAG+AGG + Chr3:66225181-66225200 None:intergenic 40.0%
CCTGTGGTTGCAGATAATAA+GGG - Chr3:66225518-66225537 MsG0380015173.01.T01:CDS 40.0%
GAGAATTATTACTCCACCAG+TGG + Chr3:66224743-66224762 None:intergenic 40.0%
GATGCAACGTTGTAGGTATT+TGG - Chr3:66225972-66225991 MsG0380015173.01.T01:intron 40.0%
GCAAGATTGCACAGGATAAA+TGG + Chr3:66225618-66225637 None:intergenic 40.0%
GGTCATTGCCTGTAGTATTA+GGG + Chr3:66227157-66227176 None:intergenic 40.0%
GTACTGTAGTTTCAGCTACA+AGG - Chr3:66224278-66224297 MsG0380015173.01.T01:three_prime_UTR 40.0%
GTAGCCATGGCCAATAATAT+TGG - Chr3:66227267-66227286 MsG0380015173.01.T01:exon 40.0%
TATCATGTGCAAGATTGCAC+AGG + Chr3:66225626-66225645 None:intergenic 40.0%
TCTGTTTCCTACAATGACCT+TGG - Chr3:66224475-66224494 MsG0380015173.01.T01:CDS 40.0%
TGCAACGTTGTAGGTATTTG+GGG - Chr3:66225974-66225993 MsG0380015173.01.T01:intron 40.0%
TGGTCATTGCCTGTAGTATT+AGG + Chr3:66227158-66227177 None:intergenic 40.0%
! GACTTTCTTTTTCCTTGACC+AGG - Chr3:66226080-66226099 MsG0380015173.01.T01:intron 40.0%
! TAGTATTAGGGCAACTTGCT+GGG + Chr3:66227145-66227164 None:intergenic 40.0%
!! ATGATGATGGAGAAAGGTAC+TGG - Chr3:66224256-66224275 MsG0380015173.01.T01:three_prime_UTR 40.0%
!!! GTAAGTTTTGTTTCCACTGG+TGG - Chr3:66224727-66224746 MsG0380015173.01.T01:intron 40.0%
!!! TCCGTAAGTTTTGTTTCCAC+TGG - Chr3:66224724-66224743 MsG0380015173.01.T01:intron 40.0%
ACAATGACCTTGGAGCTTTC+AGG - Chr3:66224485-66224504 MsG0380015173.01.T01:CDS 45.0%
ACAGTATGGAACTCAGCTTG+TGG - Chr3:66226999-66227018 MsG0380015173.01.T01:intron 45.0%
ACGCATCGAATTTGAGGATG+AGG + Chr3:66225447-66225466 None:intergenic 45.0%
ATGGAGACAGTGCAACAGTA+TGG - Chr3:66226985-66227004 MsG0380015173.01.T01:intron 45.0%
CAACAACGACAGCAGAAAGT+AGG + Chr3:66226029-66226048 None:intergenic 45.0%
CACATTGCTCCAGCTTTCAA+TGG - Chr3:66227176-66227195 MsG0380015173.01.T01:CDS 45.0%
CATTGAAAGCTGGAGCAATG+TGG + Chr3:66227178-66227197 None:intergenic 45.0%
CCCTTATTATCTGCAACCAC+AGG + Chr3:66225521-66225540 None:intergenic 45.0%
CGTCTTACGCATCGAATTTG+AGG + Chr3:66225453-66225472 None:intergenic 45.0%
GAAAGCTCCAAGGTCATTGT+AGG + Chr3:66224485-66224504 None:intergenic 45.0%
GCAAGTTGCCCTAATACTAC+AGG - Chr3:66227146-66227165 MsG0380015173.01.T01:CDS 45.0%
GTAAGCTAGCCATTGAAAGC+TGG + Chr3:66227188-66227207 None:intergenic 45.0%
GTAGTATTAGGGCAACTTGC+TGG + Chr3:66227146-66227165 None:intergenic 45.0%
GTCTCCAATGCAGGTTATGA+TGG - Chr3:66224300-66224319 MsG0380015173.01.T01:three_prime_UTR 45.0%
GTTGTTGGATGCAACGTTGT+AGG - Chr3:66225965-66225984 MsG0380015173.01.T01:intron 45.0%
TGTGTGTGAACAGAAAAGGG+AGG + Chr3:66226108-66226127 None:intergenic 45.0%
TTCCTGCGTCTTCTTCCAAT+TGG - Chr3:66224394-66224413 MsG0380015173.01.T01:CDS 45.0%
! AACTCAGCTTGTGGCTCTTT+TGG - Chr3:66227008-66227027 MsG0380015173.01.T01:intron 45.0%
! AGACATGATGAGAGGCGTAT+TGG + Chr3:66225173-66225192 None:intergenic 45.0%
! AGGTATTTGGGGCATGCAAA+TGG - Chr3:66225985-66226004 MsG0380015173.01.T01:intron 45.0%
! TACCACTAAAAGCGCACCAT+TGG - Chr3:66226408-66226427 MsG0380015173.01.T01:intron 45.0%
! TTTTGTGCGTGGTACATGAC+AGG - Chr3:66226196-66226215 MsG0380015173.01.T01:intron 45.0%
AAAAGGGAGGAACCTGGTCA+AGG + Chr3:66226095-66226114 None:intergenic 50.0%
ACAACTGGAGAGGAGTTGGA+AGG - Chr3:66224337-66224356 MsG0380015173.01.T01:CDS 50.0%
AGCTACAAGGTCTCCAATGC+AGG - Chr3:66224291-66224310 MsG0380015173.01.T01:three_prime_UTR 50.0%
CACCTCCATTGATGAAGCTC+CGG + Chr3:66226949-66226968 None:intergenic 50.0%
CACTGTCTCCATTCTCAGCT+AGG + Chr3:66226977-66226996 None:intergenic 50.0%
GAACAGAAAAGGGAGGAACC+TGG + Chr3:66226101-66226120 None:intergenic 50.0%
GACCAATTGGAAGAAGACGC+AGG + Chr3:66224399-66224418 None:intergenic 50.0%
GCTGCTACACAGAGACCAAT+TGG + Chr3:66224412-66224431 None:intergenic 50.0%
GTGGTGTACCTAGCTGAGAA+TGG - Chr3:66226966-66226985 MsG0380015173.01.T01:intron 50.0%
TGCTACAACTGGAGAGGAGT+TGG - Chr3:66224333-66224352 MsG0380015173.01.T01:CDS 50.0%
! GGTGCCATCATAACCTGCAT+TGG + Chr3:66224307-66224326 None:intergenic 50.0%
! TGCCAATGGTGCGCTTTTAG+TGG + Chr3:66226413-66226432 None:intergenic 50.0%
AAGCACGAAGCAGAGTGGGA+CGG + Chr3:66226059-66226078 None:intergenic 55.0%
AGTCCAAGCACGAAGCAGAG+TGG + Chr3:66226064-66226083 None:intergenic 55.0%
CGGAGCTTCATCAATGGAGG+TGG - Chr3:66226947-66226966 MsG0380015173.01.T01:intron 55.0%
GGAATGTCTCAGCAGTGCGT+AGG + Chr3:66224378-66224397 None:intergenic 55.0%
GTCCAAGCACGAAGCAGAGT+GGG + Chr3:66226063-66226082 None:intergenic 55.0%
TCTCCAGTTGTAGCAGCAGC+AGG + Chr3:66224328-66224347 None:intergenic 55.0%
TGCTGCTGCTACAACTGGAG+AGG - Chr3:66224327-66224346 MsG0380015173.01.T01:CDS 55.0%
TGTCTCAGCAGTGCGTAGGA+AGG + Chr3:66224374-66224393 None:intergenic 55.0%
AGCACGAAGCAGAGTGGGAC+GGG + Chr3:66226058-66226077 None:intergenic 60.0%
CGCCGGAGCTTCATCAATGG+AGG - Chr3:66226944-66226963 MsG0380015173.01.T01:intron 60.0%
GCACCTGCTGCTGCTACAAC+TGG - Chr3:66224322-66224341 MsG0380015173.01.T01:exon 60.0%
GTCCCACTCTGCTTCGTGCT+TGG - Chr3:66226058-66226077 MsG0380015173.01.T01:intron 60.0%
!! GAGCGCCGGAGCTTCATCAA+TGG - Chr3:66226941-66226960 MsG0380015173.01.T01:intron 60.0%
CACGAAGCAGAGTGGGACGG+GGG + Chr3:66226056-66226075 None:intergenic 65.0%
GCACGAAGCAGAGTGGGACG+GGG + Chr3:66226057-66226076 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 66224169 66227359 66224169 ID=MsG0380015173.01;Name=MsG0380015173.01
Chr3 mRNA 66224169 66227359 66224169 ID=MsG0380015173.01.T01;Parent=MsG0380015173.01;Name=MsG0380015173.01.T01;_AED=0.47;_eAED=0.47;_QI=87|1|1|1|1|1|3|157|215
Chr3 exon 66224169 66224607 66224169 ID=MsG0380015173.01.T01:exon:13329;Parent=MsG0380015173.01.T01
Chr3 exon 66225427 66225541 66225427 ID=MsG0380015173.01.T01:exon:13328;Parent=MsG0380015173.01.T01
Chr3 exon 66227022 66227359 66227022 ID=MsG0380015173.01.T01:exon:13327;Parent=MsG0380015173.01.T01
Chr3 five_prime_UTR 66227273 66227359 66227273 ID=MsG0380015173.01.T01:five_prime_utr;Parent=MsG0380015173.01.T01
Chr3 CDS 66227022 66227272 66227022 ID=MsG0380015173.01.T01:cds;Parent=MsG0380015173.01.T01
Chr3 CDS 66225427 66225541 66225427 ID=MsG0380015173.01.T01:cds;Parent=MsG0380015173.01.T01
Chr3 CDS 66224326 66224607 66224326 ID=MsG0380015173.01.T01:cds;Parent=MsG0380015173.01.T01
Chr3 three_prime_UTR 66224169 66224325 66224169 ID=MsG0380015173.01.T01:three_prime_utr;Parent=MsG0380015173.01.T01
Gene Sequence

>MsG0380015173.01.T01

ATGATGATGGAGAAAGGTACTGGTACTGTAGTTTCAGCTACAAGGTCTCCAATGCAGGTTATGATGGCACCTGCTGCTGCTACAACTGGAGAGGAGTTGGAAGGAAACACAACTTCCTTCCTACGCACTGCTGAGACATTCCTGCGTCTTCTTCCAATTGGTCTCTGTGTAGCAGCACTTGTTCTTATGCTCAAGAATTCCGAAGAGAATGATTATGGCTCTGTTTCCTACAATGACCTTGGAGCTTTCAGGTATTTGGGGCATGCAAATGGCATTTGCGCATGTTACTCCCTACTTTCTGCTGTCGTTGTTGCTGTCCCCCGTCCCACTCTGCTTCGTGCTTGGACTTTCTTTTTCCTTGACCAGGTACTAACATACATAATTTTGAGCGCCGGAGCTTCATCAATGGAGGTGGTGTACCTAGCTGAGAATGGAGACAGTGCAACAGTATGGAACTCAGCTTGTGGCTCTTTTGGTCAATTTTGTCATAAGGTCACAGCTTCAGTAGCTATAACATTTGTAGCACTTGTTTGCTATGTGATTCTTTCCATAATTTCCTCTTACAAGCTTTTCAGCAATTATGATGTCCCAGCAAGTTGCCCTAATACTACAGGCAATGACCACATTGCTCCAGCTTTCAATGGCTAG
Protein sequence

>MsG0380015173.01.T01

MMMEKGTGTVVSATRSPMQVMMAPAAATTGEELEGNTTSFLRTAETFLRLLPIGLCVAALVLMLKNSEENDYGSVSYNDLGAFRYLGHANGICACYSLLSAVVVAVPRPTLLRAWTFFFLDQVLTYIILSAGASSMEVVYLAENGDSATVWNSACGSFGQFCHKVTASVAITFVALVCYVILSIISSYKLFSNYDVPASCPNTTGNDHIAPAFNG*