AlfalfaGEDB | MsG0380015199.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015199.01

KEGG: K07562
GO: GO:0003677
PFAM: PF00249 PF04981

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015199.01.T01	XP_003600668.2	98.63	511	6	1	447	956	1	511	0	1055

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015199.01.T01	Q55BF2	46.405	459	227	7	461	910	10	458	3.68E-144	442

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015199.01.T01	G7J8P2	98.630	511	6	1	447	956	1	511	0.0	1055

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380015199.01	MsG0480018366.01	0.855533	5.920089e-62	1.371042e-58
MsG0380015199.01	MsG0480019050.01	0.841063	5.963764e-58	8.660140e-55
MsG0380015199.01	MsG0480020740.01	0.812231	4.703714e-51	2.974184e-48

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015199.01.T01	MTR_3g064880	98.630	511	6	1	447	956	1	511	0.0	1055
MsG0380015199.01.T01	MTR_3g064840	96.652	448	4	6	1	443	1	442	0.0	869
MsG0380015199.01.T01	MTR_4g107030	71.678	459	69	7	447	895	7	414	0.0	653
MsG0380015199.01.T01	MTR_5g091890	60.199	402	155	3	459	858	14	412	1.76e-166	495
MsG0380015199.01.T01	MTR_5g089690	37.158	366	169	11	604	936	5	342	1.14e-55	196
MsG0380015199.01.T01	MTR_5g090460	38.053	339	165	11	611	933	23	332	4.49e-55	195
MsG0380015199.01.T01	MTR_5g091160	36.464	362	176	10	604	936	5	341	3.77e-54	192
MsG0380015199.01.T01	MTR_5g090030	40.647	278	139	5	659	933	23	277	3.12e-51	182
MsG0380015199.01.T01	MTR_5g011470	33.067	375	181	11	604	936	5	351	1.55e-47	174
MsG0380015199.01.T01	MTR_5g011640	33.067	375	181	11	604	936	5	351	1.65e-47	173

Showing 1 to 10 of 63 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015199.01.T01	AT2G03820	64.752	505	158	6	450	943	6	501	0.0	694
MsG0380015199.01.T01	AT5G16560	41.452	427	150	15	1	406	1	348	1.48e-66	229
MsG0380015199.01.T01	AT1G32240	56.977	172	51	4	224	391	174	326	1.08e-47	174
MsG0380015199.01.T01	AT1G32240	56.977	172	51	4	224	391	174	326	3.02e-47	174
MsG0380015199.01.T01	AT4G17695	39.827	231	80	6	114	344	62	233	3.41e-36	140
MsG0380015199.01.T01	AT5G42630	72.727	88	24	0	270	357	100	187	9.62e-35	132
MsG0380015199.01.T01	AT5G42630	60.345	116	44	1	270	383	100	215	2.73e-34	133
MsG0380015199.01.T01	AT2G38300	38.255	149	79	4	274	419	53	191	3.57e-20	93.6
MsG0380015199.01.T01	AT4G04605	62.319	69	23	1	266	331	2	70	1.47e-19	89.0
MsG0380015199.01.T01	AT2G40260	32.314	229	119	7	237	463	62	256	5.11e-19	91.3

Showing 1 to 10 of 56 entries

Previous1 2 3 4 5 6Next

Find 228 sgRNAs with CRISPR-Local

Find 747 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCAGCAGCTTTAGG+AGG	0.569697	3:-66744583	None:intergenic
AAACAAGTTGCTTATCACTG+CGG	0.764201	3:-66744471	None:intergenic
AAACCAAACTTCAAGGTAAG+TGG	0.487609	3:-66744667	None:intergenic
AAAGAAGAATTAGAAGTACT+TGG	0.514145	3:-66733378	None:intergenic
AAAGGCATAGAAAAGAAAAC+AGG	0.479240	3:-66732664	None:intergenic
AAAGTCAAGAGAAAGAAGAA+GGG	0.571326	3:-66732836	None:intergenic
AAAGTCAGTATTGGAACTGA+TGG	0.515750	3:+66734529	MsG0380015199.01.T01:CDS
AACATATAAATTTCTATTTC+AGG	0.245354	3:-66745347	None:intergenic
AACCTTGACTTTAACCCTCT+TGG	0.339925	3:-66744128	None:intergenic
AACTAACCTTTGATAATATA+TGG	0.305714	3:-66733258	None:intergenic

Showing 1 to 10 of 228 entries

Previous1 2 3 4 5…23Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACATAAGTACGCTTC+AGG	-	Chr3:66743692-66743711	None:intergenic	30.0%
AAAACACACTTTGAATTAGG+TGG	-	Chr3:66742454-66742473	None:intergenic	30.0%
AAAATGAGATCATTAGGACA+TGG	+	Chr3:66738554-66738573	MsG0380015199.01.T01:intron	30.0%
AAAGATTAATGTGGCATGAA+AGG	+	Chr3:66738891-66738910	MsG0380015199.01.T01:intron	30.0%
AAAGTCAAGAGAAAGAAGAA+GGG	-	Chr3:66732839-66732858	None:intergenic	30.0%
AACATGTCAAGAATGTCTTA+TGG	+	Chr3:66739066-66739085	MsG0380015199.01.T01:intron	30.0%
AAGAATAAAAAGGGTTCTTG+TGG	+	Chr3:66735793-66735812	MsG0380015199.01.T01:intron	30.0%
AAGCTAAGAAGAAAAAGAAG+AGG	-	Chr3:66732891-66732910	None:intergenic	30.0%
AAGGCTCATAATAGTAAGTT+TGG	+	Chr3:66737229-66737248	MsG0380015199.01.T01:intron	30.0%
AATCCTATGCATTCTTAGTT+CGG	-	Chr3:66740967-66740986	None:intergenic	30.0%

Showing 1 to 10 of 747 entries

Previous1 2 3 4 5…75Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	66732631	66745727	66732631	ID=MsG0380015199.01;Name=MsG0380015199.01
Chr3	mRNA	66732631	66745727	66732631	ID=MsG0380015199.01.T01;Parent=MsG0380015199.01;Name=MsG0380015199.01.T01;_AED=0.48;_eAED=0.48;_QI=669\|0.85\|0.87\|1\|0.85\|0.75\|8\|378\|956
Chr3	exon	66732631	66734197	66732631	ID=MsG0380015199.01.T01:exon:23083;Parent=MsG0380015199.01.T01
Chr3	exon	66734519	66734595	66734519	ID=MsG0380015199.01.T01:exon:23084;Parent=MsG0380015199.01.T01
Chr3	exon	66735053	66735098	66735053	ID=MsG0380015199.01.T01:exon:23085;Parent=MsG0380015199.01.T01
Chr3	exon	66735451	66735604	66735451	ID=MsG0380015199.01.T01:exon:23086;Parent=MsG0380015199.01.T01
Chr3	exon	66737680	66737779	66737680	ID=MsG0380015199.01.T01:exon:23087;Parent=MsG0380015199.01.T01
Chr3	exon	66737987	66738038	66737987	ID=MsG0380015199.01.T01:exon:23088;Parent=MsG0380015199.01.T01
Chr3	exon	66743786	66745571	66743786	ID=MsG0380015199.01.T01:exon:23089;Parent=MsG0380015199.01.T01
Chr3	exon	66745592	66745727	66745592	ID=MsG0380015199.01.T01:exon:23090;Parent=MsG0380015199.01.T01
Chr3	five_prime_UTR	66732631	66733299	66732631	ID=MsG0380015199.01.T01:five_prime_utr;Parent=MsG0380015199.01.T01
Chr3	CDS	66733300	66734197	66733300	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66734519	66734595	66734519	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66735053	66735098	66735053	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66735451	66735604	66735451	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66737680	66737779	66737680	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66737987	66738038	66737987	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	CDS	66743786	66745329	66743786	ID=MsG0380015199.01.T01:cds;Parent=MsG0380015199.01.T01
Chr3	three_prime_UTR	66745330	66745571	66745330	ID=MsG0380015199.01.T01:three_prime_utr;Parent=MsG0380015199.01.T01
Chr3	three_prime_UTR	66745592	66745727	66745592	ID=MsG0380015199.01.T01:three_prime_utr;Parent=MsG0380015199.01.T01

Gene Sequence

>MsG0380015199.01.T01

ATGCCCTTGGAAGGGATTTTCATTGAACCAATTTCAACATCAACAACACCACCTGATCTTTCTCTTCACATAAGTCCTCCAAGTACTTCTAATTCTTCTTTGATTAACACAACTCAACCATCCAATTATGAACCTCATAATTCTTCAAGAACAACTTTGGCTCAAGCTCAAGCTCACACTGAACTATCTCTTGGAAGAAATTTTAGTTGTGGTGCTCAAGAACAACCACAACAACATCAACAACAACCACATAACCCTTATTATCAAAACCAACAAGCTCATTTTCCTCACTTTCAACATCACAACAATCACAGCTCTACAACAACAACAACAACAAGTACTACAACAAATTCTTCAAGTCACATGAATCACATAAATTATGGTGTTTCATTGCTTGATGTGTCATCAACATCATCAGAAGGGTTAAGACCAATCAAAGGGATTCCAGTCTATCATAACCGTTCATTCCCCTTTTTACCAGCCATGGAACATTCAAGAGAAAAAGATCCAAAGATGTGTTTATATCACCACATGCCTAATTCAACTCCGTCTCCTTCTTCGTCATCTTCACCTCTTTCCCCCTACATAGCTGCAGGGGGTTTAGATCCCATGTCGTTTTTAAACTCCAGTGGCTCTGCGGCTTATAGAGCCGCCGTAGCCACAAGGTTTAATAACGAACCTTTCAAATCTCATCAATATCCATTGCACCACCATCATCATCATCATCACTCACACTATGGGAGTGTTGGACTTGGTAGCTCAGAAGCATCCATGATGAGATCAAGGTTTTTGCCTAAATTGCCGACAAAAAGAAGCATGAGAGCACCAAGAATGCGATGGACAAGTACACTCCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCAACACCAAAGTCAGTATTGGAACTGATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACAACTGACAAACCTGCAGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAGGATGATGTGCCACAAATTGGAAGCAATGGTGGAATTCGTCAATTTTCAGATCAAAGAGGGCTAACAGATAGACCAATACAGCAAGATATGGATTACTCATCCACCAACACTCTATGGAGTAATTCTTCAAGTAGTAGAGAACCATGGCCACAAACAAGTCCAAACGACATAGATGGTTTCAGACCAACTATCTTCCAATCACAACCAATATCAGGAGGACATCAAATTCAGGAGTGTGATTCAAATCAGCTCAAGAACAATTTGTCAGGATCTAATTTAGAGTGTGTATTCGAGATGGCACAAGAAGCCGGTATGTTCATGGTTCACCAAACAATTGGCAGTGTTTTGTGTTGCAAATGTGGGATTCGTATGCAACCAAATGCAGCCAATATGTGTGTGAAGTGTTTGCGCTCAGAAGTTGATATCACGGAAGGATTACTTAAGCGTCTGGTGCTTGTTCATTGTCCTGAGTGTGAAAGTTACTTGCAGCCACCGAGAACTTGGGTCAAACTTCAGTTAGAATCAAAGGAGCTGCTGACATTTTGCTTGAAAAAATTGCAGAAGAATATGAATATCAATAAGGCAAAGTTAGTAAATGCTGAGTTTATTTGGACAGAGCCACATTCCAAGAGGGTTAAAGTCAAGGTTAGTGTCCAGAAGGAAGTTTATCACGGCGCAATTCTCGAACAGTCTTACCCTGTTGAGTATGTTCAACAGGATCACATGTGTGAATCTTGCTCTAGGGTTGCAGCTAACCCTGATCAGTGGATTGCTGCTGTGCAACTCAGGCAACATGTCTCTCATAGGCGTACTTTTTACTATTTGGAGCAGCTAATTCTAAGGCATGGTGCTGCTGCTCGTGCTATCAGAATCAAACAGATGGATCACGGTATTGACTTCTATTTCTCTAATCGAAGTCATGGTATCAAGTTTGTTGAATTTGTAGGGAAAGTAGCCCCTGTTAAGAGCCGCAGTGATAAGCAACTTGTTTCTCATGATTCGAAGAGTAATAACTACAATTATAAGTACACATTTTCTGTGGAAATCAGCCCCATTTGTCGTGAGGATTTAATTTGTTTGCCTCCTAAAGCTGCTGCAATTTTGGGAAATATCGGTCCTATTGTGATTTGCACGAAGGTTACTAACAGCATTGCTTTGCTTGATCCACTTACCTTGAAGTTTGGTTTCTTGGATGCTGAGCAGTATTGGAGGACATCCTTCAAGTCTTTACTTACTAGCAGACAGTTGGTGGAGTATATAGTGTTGGATGTGGAAGTTGTTTCATCTGAGGTTAATGTCGGTGGCACGAAATATGTTTTAGCTGATGCTCAAGTGGCCCGTGTGTCTGATTTTGGAAAGAATGACACGATGTTTTCTATCAGAACTCATTTGGGCCATCTTTTAAAGCCTGGTGACAATGCTCTTGGTTATGATTTGTATGCTGCCAACAGTAATGACATGGAATTGGACAGGTACAAAGGAAATATTCCTGAAGTGGTTTTGATAAAGAAGAGCTATGAAGATCGCAAGACTCGTTCATTTAAGCTTAGACGAATTCCCATGGAGGCTGATGATAAGATTAAAGTTAATGAAGATAAGAGAAGTGCAGAATATGAACTTTTCTTGAAAGAGCTAGAAGAAAACCCTGAATTGCGGTTCAACATATCATTATACCAAAATAAAGACTATAAACCATCAGAGGTGGCATCTGTGACTGATGGTGAAGAGGCACCTTCTGTTCCATGGGATGAGCTGCTAACTGGGCTTGAAGATCTTGACCTGAGTGAGGGTGAGGGTGACGATGGCGACGATAACATGGCTGAATAA

Protein sequence

>MsG0380015199.01.T01

MPLEGIFIEPISTSTTPPDLSLHISPPSTSNSSLINTTQPSNYEPHNSSRTTLAQAQAHTELSLGRNFSCGAQEQPQQHQQQPHNPYYQNQQAHFPHFQHHNNHSSTTTTTTSTTTNSSSHMNHINYGVSLLDVSSTSSEGLRPIKGIPVYHNRSFPFLPAMEHSREKDPKMCLYHHMPNSTPSPSSSSSPLSPYIAAGGLDPMSFLNSSGSAAYRAAVATRFNNEPFKSHQYPLHHHHHHHHSHYGSVGLGSSEASMMRSRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSGLSDGSGEDDVPQIGSNGGIRQFSDQRGLTDRPIQQDMDYSSTNTLWSNSSSSREPWPQTSPNDIDGFRPTIFQSQPISGGHQIQECDSNQLKNNLSGSNLECVFEMAQEAGMFMVHQTIGSVLCCKCGIRMQPNAANMCVKCLRSEVDITEGLLKRLVLVHCPECESYLQPPRTWVKLQLESKELLTFCLKKLQKNMNINKAKLVNAEFIWTEPHSKRVKVKVSVQKEVYHGAILEQSYPVEYVQQDHMCESCSRVAANPDQWIAAVQLRQHVSHRRTFYYLEQLILRHGAAARAIRIKQMDHGIDFYFSNRSHGIKFVEFVGKVAPVKSRSDKQLVSHDSKSNNYNYKYTFSVEISPICREDLICLPPKAAAILGNIGPIVICTKVTNSIALLDPLTLKFGFLDAEQYWRTSFKSLLTSRQLVEYIVLDVEVVSSEVNVGGTKYVLADAQVARVSDFGKNDTMFSIRTHLGHLLKPGDNALGYDLYAANSNDMELDRYKGNIPEVVLIKKSYEDRKTRSFKLRRIPMEADDKIKVNEDKRSAEYELFLKELEENPELRFNISLYQNKDYKPSEVASVTDGEEAPSVPWDELLTGLEDLDLSEGEGDDGDDNMAE*