Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015214.01.T01 | RHN68107.1 | 88.068 | 352 | 38 | 3 | 3 | 350 | 1 | 352 | 0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015214.01.T01 | A0A396IYR1 | 88.068 | 352 | 38 | 3 | 3 | 350 | 1 | 352 | 0.0 | 572 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380015056.01 | MsG0380015214.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015214.01.T01 | MTR_3g065180 | 88.529 | 340 | 35 | 3 | 15 | 350 | 1 | 340 | 0.0 | 553 |
| MsG0380015214.01.T01 | MTR_7g056407 | 69.275 | 345 | 91 | 7 | 15 | 350 | 1 | 339 | 6.47e-135 | 388 |
| MsG0380015214.01.T01 | MTR_8g013650 | 64.151 | 53 | 19 | 0 | 298 | 350 | 182 | 234 | 6.13e-22 | 93.2 |
| MsG0380015214.01.T01 | MTR_4g132760 | 35.461 | 141 | 71 | 2 | 210 | 350 | 97 | 217 | 1.24e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015214.01.T01 | AT3G07120 | 35.215 | 372 | 193 | 12 | 15 | 350 | 1 | 360 | 2.54e-49 | 169 |
| MsG0380015214.01.T01 | AT3G25030 | 43.548 | 124 | 55 | 2 | 229 | 350 | 100 | 210 | 1.29e-25 | 102 |
| MsG0380015214.01.T01 | AT3G25030 | 43.548 | 124 | 55 | 2 | 229 | 350 | 140 | 250 | 1.39e-25 | 103 |
| MsG0380015214.01.T01 | AT3G25030 | 39.496 | 119 | 58 | 7 | 5 | 118 | 7 | 116 | 2.11e-13 | 69.7 |
| MsG0380015214.01.T01 | AT3G25030 | 43.548 | 124 | 55 | 2 | 229 | 350 | 140 | 250 | 1.39e-25 | 103 |
| MsG0380015214.01.T01 | AT3G25030 | 39.496 | 119 | 58 | 7 | 5 | 118 | 7 | 116 | 2.11e-13 | 69.7 |
| MsG0380015214.01.T01 | AT3G25030 | 43.548 | 124 | 55 | 2 | 229 | 350 | 140 | 250 | 1.39e-25 | 103 |
| MsG0380015214.01.T01 | AT3G25030 | 39.496 | 119 | 58 | 7 | 5 | 118 | 7 | 116 | 2.11e-13 | 69.7 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 158 | 256 | 6.63e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 4 | 114 | 3.00e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 158 | 256 | 7.05e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.33e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 158 | 256 | 7.05e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.33e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 161 | 259 | 7.31e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.10e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 161 | 259 | 7.31e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.10e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 161 | 259 | 7.31e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.10e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 161 | 259 | 7.31e-23 | 96.7 |
| MsG0380015214.01.T01 | AT4G13100 | 35.897 | 117 | 66 | 5 | 5 | 118 | 7 | 117 | 3.10e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 45.370 | 108 | 43 | 3 | 250 | 350 | 167 | 265 | 1.03e-22 | 96.3 |
| MsG0380015214.01.T01 | AT4G22250 | 39.474 | 114 | 46 | 3 | 243 | 350 | 118 | 214 | 1.95e-16 | 77.8 |
| MsG0380015214.01.T01 | AT4G03965 | 34.545 | 110 | 63 | 2 | 241 | 350 | 109 | 209 | 4.01e-15 | 73.9 |
| MsG0380015214.01.T01 | AT1G62370 | 30.496 | 141 | 70 | 4 | 214 | 350 | 88 | 204 | 1.81e-12 | 66.2 |
| MsG0380015214.01.T01 | AT4G13100 | 35.135 | 111 | 64 | 4 | 10 | 118 | 13 | 117 | 1.90e-12 | 67.0 |
Find 83 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTGCTGTTTGGATTT+TGG | 0.125473 | 3:-66924560 | None:intergenic |
| TAGCCGAAGCTTGTCTTTAA+AGG | 0.159939 | 3:-66924478 | None:intergenic |
| GAGCTCCCACGAGTGAATTT+TGG | 0.247907 | 3:-66924702 | None:intergenic |
| GATGTGTTCAAGGGAGCTTC+TGG | 0.299919 | 3:+66925211 | MsG0380015214.01.T01:CDS |
| TGTGAAAAGCTTCTGCTGTT+TGG | 0.327474 | 3:-66924567 | None:intergenic |
| ATGTCGTTGATGGATTTGTT+AGG | 0.340148 | 3:+66924999 | MsG0380015214.01.T01:CDS |
| GATAATGCCCTCCCCGTCTC+TGG | 0.395714 | 3:-66924894 | None:intergenic |
| GGGGAGACTGATAGAGAGAT+GGG | 0.409616 | 3:+66925020 | MsG0380015214.01.T01:CDS |
| GCTGAAGCTGAGGCTGCAAC+AGG | 0.421412 | 3:+66924966 | MsG0380015214.01.T01:CDS |
| TGTCGTTGATGGATTTGTTA+GGG | 0.426572 | 3:+66925000 | MsG0380015214.01.T01:CDS |
| ACCTCCGACGATGTCGTTGA+TGG | 0.428506 | 3:+66924989 | MsG0380015214.01.T01:CDS |
| TGGATAGGGATGTCTGATGT+TGG | 0.451282 | 3:-66924540 | None:intergenic |
| AAGCCTTTAAAGACAAGCTT+CGG | 0.451547 | 3:+66924475 | MsG0380015214.01.T01:CDS |
| TGGATCCGACGACACACTAC+TGG | 0.451753 | 3:-66924799 | None:intergenic |
| AGCGGCAGAAGCTGCAGCGG+AGG | 0.453049 | 3:+66924944 | MsG0380015214.01.T01:CDS |
| AGAGCTTGGCGGTGTAGAGC+CGG | 0.453417 | 3:-66924052 | None:intergenic |
| TATTTGCATGGTGAAGCATA+AGG | 0.455029 | 3:+66925151 | MsG0380015214.01.T01:CDS |
| CGTCTTTGATGATGTCTATG+AGG | 0.458675 | 3:-66924110 | None:intergenic |
| AGCAGTGGCGGCACAAGAAG+CGG | 0.461146 | 3:+66924926 | MsG0380015214.01.T01:CDS |
| GGATGCTTGGTATCATCGTC+TGG | 0.461468 | 3:-66924873 | None:intergenic |
| GAAGCATAAGGGCACTGCTT+TGG | 0.462618 | 3:+66925163 | MsG0380015214.01.T01:CDS |
| CCTCCCCGTCTCTGGATGCT+TGG | 0.465184 | 3:-66924886 | None:intergenic |
| TATGGAACTGGAAGGTCATC+GGG | 0.465755 | 3:+66923933 | None:intergenic |
| AGGGATGTCTGATGTTGGAA+TGG | 0.468079 | 3:-66924535 | None:intergenic |
| TGCTTTGGCGTTGTAGAGCT+TGG | 0.469785 | 3:-66924066 | None:intergenic |
| TGCAGCGGAGGCTGAAGCTG+AGG | 0.471952 | 3:+66924956 | MsG0380015214.01.T01:CDS |
| AGGGGAGACTGATAGAGAGA+TGG | 0.472745 | 3:+66925019 | MsG0380015214.01.T01:CDS |
| TCGTCGGATCCATTCCGAAA+AGG | 0.487048 | 3:+66924810 | MsG0380015214.01.T01:CDS |
| CGTCGGATCCATTCCGAAAA+GGG | 0.487282 | 3:+66924811 | MsG0380015214.01.T01:CDS |
| ATTTGCATGGTGAAGCATAA+GGG | 0.490601 | 3:+66925152 | MsG0380015214.01.T01:CDS |
| TGTCTGAGTCGTGATGAGTT+TGG | 0.492254 | 3:-66924617 | None:intergenic |
| AAGGGAGCTTCTGGTTGCTA+AGG | 0.496586 | 3:+66925220 | MsG0380015214.01.T01:CDS |
| GATACCAAGCATCCAGAGAC+GGG | 0.496822 | 3:+66924882 | MsG0380015214.01.T01:CDS |
| AGAAGCGGCAGAAGCTGCAG+CGG | 0.497737 | 3:+66924941 | MsG0380015214.01.T01:CDS |
| GAGCTTGGCGGTGTAGAGCC+GGG | 0.499580 | 3:-66924051 | None:intergenic |
| TGGCCTGCTAGCTGGAGCAT+GGG | 0.500180 | 3:-66924682 | None:intergenic |
| GACTGATAGAGAGATGGGGT+TGG | 0.500325 | 3:+66925025 | MsG0380015214.01.T01:CDS |
| AATCCCATGCTCCAGCTAGC+AGG | 0.507491 | 3:+66924679 | MsG0380015214.01.T01:CDS |
| GATAGAGAGATGGGGTTGGA+AGG | 0.508067 | 3:+66925029 | MsG0380015214.01.T01:CDS |
| TAAAGCGTGCTGGCTCTGCT+TGG | 0.510415 | 3:+66924499 | MsG0380015214.01.T01:CDS |
| AGATGGGGTTGGAAGGGTCA+AGG | 0.511672 | 3:+66925036 | MsG0380015214.01.T01:CDS |
| GGGATGTCTGATGTTGGAAT+GGG | 0.514310 | 3:-66924534 | None:intergenic |
| TTGGCCTGCTAGCTGGAGCA+TGG | 0.514758 | 3:-66924683 | None:intergenic |
| GAAGGTGAAGATGATGAAGA+TGG | 0.517231 | 3:+66925101 | MsG0380015214.01.T01:CDS |
| AAGCTTCGGCTAAAGCGTGC+TGG | 0.527008 | 3:+66924489 | MsG0380015214.01.T01:CDS |
| AGGGAGCTTCTGGTTGCTAA+GGG | 0.527571 | 3:+66925221 | MsG0380015214.01.T01:CDS |
| ATACTAGTGGAGGAAATCTC+CGG | 0.536362 | 3:+66924754 | MsG0380015214.01.T01:CDS |
| AGCAAGCGAGAGAAGCTAGC+GGG | 0.542475 | 3:+66923991 | MsG0380015214.01.T01:CDS |
| ATATGGAACTGGAAGGTCAT+CGG | 0.543517 | 3:+66923932 | None:intergenic |
| ATGGATCGAGGTCATCTACT+TGG | 0.544070 | 3:-66924650 | None:intergenic |
| GTCTTTGATGATGTCTATGA+GGG | 0.544217 | 3:-66924109 | None:intergenic |
| GGAGCATGGGATTCATCTGA+TGG | 0.544263 | 3:-66924669 | None:intergenic |
| ACACACTTGTTCTATTTGCA+TGG | 0.550618 | 3:+66925139 | MsG0380015214.01.T01:CDS |
| AAGGTGAAGATGATGAAGAT+GGG | 0.554506 | 3:+66925102 | MsG0380015214.01.T01:CDS |
| TCGAGACAGCTTCGACGATG+AGG | 0.576310 | 3:+66924848 | MsG0380015214.01.T01:CDS |
| AAAACGAAATTATTACAAAG+TGG | 0.576401 | 3:-66925251 | None:intergenic |
| TTTGGCGTTGTAGAGCTTGG+CGG | 0.578554 | 3:-66924063 | None:intergenic |
| TGAAGATGGGGAAAGTGCAT+TGG | 0.583542 | 3:+66925115 | MsG0380015214.01.T01:CDS |
| ATAGAGAGATGGGGTTGGAA+GGG | 0.584366 | 3:+66925030 | MsG0380015214.01.T01:CDS |
| AGCAGGCCAAAATTCACTCG+TGG | 0.590104 | 3:+66924696 | MsG0380015214.01.T01:CDS |
| GAATTCTTGCGTGATAATTG+TGG | 0.593473 | 3:-66924777 | None:intergenic |
| GATTCCTCTGAGAATACTAG+TGG | 0.594699 | 3:+66924741 | MsG0380015214.01.T01:CDS |
| AAGGTATATATTAAGTGATG+AGG | 0.596739 | 3:+66925055 | MsG0380015214.01.T01:CDS |
| TCCTCTGAGAATACTAGTGG+AGG | 0.597257 | 3:+66924744 | MsG0380015214.01.T01:CDS |
| TGATACCAAGCATCCAGAGA+CGG | 0.598650 | 3:+66924881 | MsG0380015214.01.T01:CDS |
| GAATTCCAGTAGTGTGTCGT+CGG | 0.603076 | 3:+66924794 | MsG0380015214.01.T01:CDS |
| TCTTGCGTGATAATTGTGGC+CGG | 0.603393 | 3:-66924773 | None:intergenic |
| TCCATCAACGACATCGTCGG+AGG | 0.611948 | 3:-66924990 | None:intergenic |
| GCAGGCCAAAATTCACTCGT+GGG | 0.618628 | 3:+66924697 | MsG0380015214.01.T01:CDS |
| AAATCCATCAACGACATCGT+CGG | 0.618750 | 3:-66924993 | None:intergenic |
| GTCGTTGATGGATTTGTTAG+GGG | 0.618908 | 3:+66925001 | MsG0380015214.01.T01:CDS |
| ATCTGCGAGAGAAGCAGTGG+CGG | 0.621972 | 3:+66924914 | MsG0380015214.01.T01:CDS |
| ATTATCTGCGAGAGAAGCAG+TGG | 0.640834 | 3:+66924911 | MsG0380015214.01.T01:CDS |
| TTATGAGGAAATGTCAGCTG+CGG | 0.647602 | 3:+66923966 | MsG0380015214.01.T01:CDS |
| GGGAGACTGATAGAGAGATG+GGG | 0.649131 | 3:+66925021 | MsG0380015214.01.T01:CDS |
| CAAGCATCCAGAGACGGGGA+GGG | 0.651075 | 3:+66924887 | MsG0380015214.01.T01:CDS |
| TCCTCCACTAGTATTCTCAG+AGG | 0.651316 | 3:-66924745 | None:intergenic |
| CCAAGCATCCAGAGACGGGG+AGG | 0.656073 | 3:+66924886 | MsG0380015214.01.T01:CDS |
| AGGTGAAGATGATGAAGATG+GGG | 0.657673 | 3:+66925103 | MsG0380015214.01.T01:CDS |
| TTAGCGAATCAACAAAGACC+CGG | 0.663952 | 3:+66924033 | MsG0380015214.01.T01:CDS |
| GGGATTCATCTGATGGATCG+AGG | 0.669034 | 3:-66924662 | None:intergenic |
| GAGCAAGCGAGAGAAGCTAG+CGG | 0.703074 | 3:+66923990 | MsG0380015214.01.T01:CDS |
| ATACCAAGCATCCAGAGACG+GGG | 0.703842 | 3:+66924883 | MsG0380015214.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTGATCAATTTTATTTTA+TGG | + | Chr3:66924365-66924384 | MsG0380015214.01.T01:intron | 10.0% |
| !! | AAAACGAAATTATTACAAAG+TGG | - | Chr3:66925254-66925273 | None:intergenic | 20.0% |
| !! | GACATATATATAAAAAGAAG+TGG | + | Chr3:66924199-66924218 | MsG0380015214.01.T01:intron | 20.0% |
| ! | AAGGTATATATTAAGTGATG+AGG | + | Chr3:66925055-66925074 | MsG0380015214.01.T01:CDS | 25.0% |
| ! | AATTAGTTAGTTACTCTACA+AGG | - | Chr3:66924261-66924280 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTTACTCTACAA+GGG | - | Chr3:66924260-66924279 | None:intergenic | 25.0% |
| !! | AAAAAACCACTTCTTTTTAG+AGG | - | Chr3:66924237-66924256 | None:intergenic | 25.0% |
| !!! | TTTTCTGATGATGATTATGA+AGG | + | Chr3:66925083-66925102 | MsG0380015214.01.T01:CDS | 25.0% |
| AACACATCCTACAAAAACTA+TGG | - | Chr3:66925199-66925218 | None:intergenic | 30.0% | |
| TTCATTGATATGGAAGATCT+TGG | + | Chr3:66924451-66924470 | MsG0380015214.01.T01:intron | 30.0% | |
| ! | CTGCTTCATTTTCATTGATA+TGG | + | Chr3:66924441-66924460 | MsG0380015214.01.T01:intron | 30.0% |
| ! | TTTTTGTAGGATGTGTTCAA+GGG | + | Chr3:66925202-66925221 | MsG0380015214.01.T01:CDS | 30.0% |
| AAACCAACAAAAAAGATCGC+AGG | + | Chr3:66924136-66924155 | MsG0380015214.01.T01:CDS | 35.0% | |
| AAGGTGAAGATGATGAAGAT+GGG | + | Chr3:66925102-66925121 | MsG0380015214.01.T01:CDS | 35.0% | |
| ACACACTTGTTCTATTTGCA+TGG | + | Chr3:66925139-66925158 | MsG0380015214.01.T01:CDS | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | Chr3:66925152-66925171 | MsG0380015214.01.T01:CDS | 35.0% | |
| GAATTCTTGCGTGATAATTG+TGG | - | Chr3:66924780-66924799 | None:intergenic | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | Chr3:66925151-66925170 | MsG0380015214.01.T01:CDS | 35.0% | |
| ! | AAGCCTTTAAAGACAAGCTT+CGG | + | Chr3:66924475-66924494 | MsG0380015214.01.T01:CDS | 35.0% |
| ! | AGCAGAAGCTTTTCACAATT+CGG | + | Chr3:66924573-66924592 | MsG0380015214.01.T01:CDS | 35.0% |
| ! | CTTGTAGCCATAGTTTTTGT+AGG | + | Chr3:66925189-66925208 | MsG0380015214.01.T01:CDS | 35.0% |
| ! | GTTTTTGTAGGATGTGTTCA+AGG | + | Chr3:66925201-66925220 | MsG0380015214.01.T01:CDS | 35.0% |
| ! | TCGGGAAAGAACATTTTATG+AGG | + | Chr3:66923951-66923970 | MsG0380015214.01.T01:CDS | 35.0% |
| ! | TTCCTTCCTCTAAAAAGAAG+TGG | + | Chr3:66924228-66924247 | MsG0380015214.01.T01:intron | 35.0% |
| !! | AACCACTTCTTTTTAGAGGA+AGG | - | Chr3:66924233-66924252 | None:intergenic | 35.0% |
| !! | ATGTCGTTGATGGATTTGTT+AGG | + | Chr3:66924999-66925018 | MsG0380015214.01.T01:CDS | 35.0% |
| !! | GTCTTTGATGATGTCTATGA+GGG | - | Chr3:66924112-66924131 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGATTTTGGATA+GGG | - | Chr3:66924557-66924576 | None:intergenic | 35.0% |
| !! | TGTCGTTGATGGATTTGTTA+GGG | + | Chr3:66925000-66925019 | MsG0380015214.01.T01:CDS | 35.0% |
| !!! | TTACCTGCGATCTTTTTTGT+TGG | - | Chr3:66924142-66924161 | None:intergenic | 35.0% |
| AAATCCATCAACGACATCGT+CGG | - | Chr3:66924996-66925015 | None:intergenic | 40.0% | |
| AGGTGAAGATGATGAAGATG+GGG | + | Chr3:66925103-66925122 | MsG0380015214.01.T01:CDS | 40.0% | |
| ATACTAGTGGAGGAAATCTC+CGG | + | Chr3:66924754-66924773 | MsG0380015214.01.T01:CDS | 40.0% | |
| GAAGGTGAAGATGATGAAGA+TGG | + | Chr3:66925101-66925120 | MsG0380015214.01.T01:CDS | 40.0% | |
| TAGCCGAAGCTTGTCTTTAA+AGG | - | Chr3:66924481-66924500 | None:intergenic | 40.0% | |
| TGTGAAAAGCTTCTGCTGTT+TGG | - | Chr3:66924570-66924589 | None:intergenic | 40.0% | |
| TTAGCGAATCAACAAAGACC+CGG | + | Chr3:66924033-66924052 | MsG0380015214.01.T01:CDS | 40.0% | |
| TTATGAGGAAATGTCAGCTG+CGG | + | Chr3:66923966-66923985 | MsG0380015214.01.T01:CDS | 40.0% | |
| ! | ATGAGGGTTCGACTTTTAGA+GGG | - | Chr3:66924096-66924115 | None:intergenic | 40.0% |
| ! | GATTCCTCTGAGAATACTAG+TGG | + | Chr3:66924741-66924760 | MsG0380015214.01.T01:CDS | 40.0% |
| ! | TATGAGGGTTCGACTTTTAG+AGG | - | Chr3:66924097-66924116 | None:intergenic | 40.0% |
| !! | AGCTTCTGCTGTTTGGATTT+TGG | - | Chr3:66924563-66924582 | None:intergenic | 40.0% |
| !! | CGTCTTTGATGATGTCTATG+AGG | - | Chr3:66924113-66924132 | None:intergenic | 40.0% |
| !! | CTGCTGTTTGGATTTTGGAT+AGG | - | Chr3:66924558-66924577 | None:intergenic | 40.0% |
| !! | GTCGTTGATGGATTTGTTAG+GGG | + | Chr3:66925001-66925020 | MsG0380015214.01.T01:CDS | 40.0% |
| AGGGATGTCTGATGTTGGAA+TGG | - | Chr3:66924538-66924557 | None:intergenic | 45.0% | |
| ATAGAGAGATGGGGTTGGAA+GGG | + | Chr3:66925030-66925049 | MsG0380015214.01.T01:CDS | 45.0% | |
| ATGGATCGAGGTCATCTACT+TGG | - | Chr3:66924653-66924672 | None:intergenic | 45.0% | |
| ATTATCTGCGAGAGAAGCAG+TGG | + | Chr3:66924911-66924930 | MsG0380015214.01.T01:CDS | 45.0% | |
| GAATTCCAGTAGTGTGTCGT+CGG | + | Chr3:66924794-66924813 | MsG0380015214.01.T01:CDS | 45.0% | |
| GGGATGTCTGATGTTGGAAT+GGG | - | Chr3:66924537-66924556 | None:intergenic | 45.0% | |
| TCCTCCACTAGTATTCTCAG+AGG | - | Chr3:66924748-66924767 | None:intergenic | 45.0% | |
| TCTTGCGTGATAATTGTGGC+CGG | - | Chr3:66924776-66924795 | None:intergenic | 45.0% | |
| TGATACCAAGCATCCAGAGA+CGG | + | Chr3:66924881-66924900 | MsG0380015214.01.T01:CDS | 45.0% | |
| TGGATAGGGATGTCTGATGT+TGG | - | Chr3:66924543-66924562 | None:intergenic | 45.0% | |
| TGTCTGAGTCGTGATGAGTT+TGG | - | Chr3:66924620-66924639 | None:intergenic | 45.0% | |
| ! | AAGTCACTACACGCCCTTTT+CGG | - | Chr3:66924827-66924846 | None:intergenic | 45.0% |
| ! | TCCTCTGAGAATACTAGTGG+AGG | + | Chr3:66924744-66924763 | MsG0380015214.01.T01:CDS | 45.0% |
| ! | TGAAGATGGGGAAAGTGCAT+TGG | + | Chr3:66925115-66925134 | MsG0380015214.01.T01:CDS | 45.0% |
| !! | CTTTTAGAGGGTGGTTGCTT+TGG | - | Chr3:66924084-66924103 | None:intergenic | 45.0% |
| AGCAGGCCAAAATTCACTCG+TGG | + | Chr3:66924696-66924715 | MsG0380015214.01.T01:CDS | 50.0% | |
| AGGGGAGACTGATAGAGAGA+TGG | + | Chr3:66925019-66925038 | MsG0380015214.01.T01:CDS | 50.0% | |
| ATACCAAGCATCCAGAGACG+GGG | + | Chr3:66924883-66924902 | MsG0380015214.01.T01:CDS | 50.0% | |
| CGTCGGATCCATTCCGAAAA+GGG | + | Chr3:66924811-66924830 | MsG0380015214.01.T01:CDS | 50.0% | |
| GACTGATAGAGAGATGGGGT+TGG | + | Chr3:66925025-66925044 | MsG0380015214.01.T01:CDS | 50.0% | |
| GATACCAAGCATCCAGAGAC+GGG | + | Chr3:66924882-66924901 | MsG0380015214.01.T01:CDS | 50.0% | |
| GATAGAGAGATGGGGTTGGA+AGG | + | Chr3:66925029-66925048 | MsG0380015214.01.T01:CDS | 50.0% | |
| GATGTGTTCAAGGGAGCTTC+TGG | + | Chr3:66925211-66925230 | MsG0380015214.01.T01:CDS | 50.0% | |
| GCAGGCCAAAATTCACTCGT+GGG | + | Chr3:66924697-66924716 | MsG0380015214.01.T01:CDS | 50.0% | |
| GGAGCATGGGATTCATCTGA+TGG | - | Chr3:66924672-66924691 | None:intergenic | 50.0% | |
| GGATGCTTGGTATCATCGTC+TGG | - | Chr3:66924876-66924895 | None:intergenic | 50.0% | |
| GGGAGACTGATAGAGAGATG+GGG | + | Chr3:66925021-66925040 | MsG0380015214.01.T01:CDS | 50.0% | |
| GGGGAGACTGATAGAGAGAT+GGG | + | Chr3:66925020-66925039 | MsG0380015214.01.T01:CDS | 50.0% | |
| TCGTCGGATCCATTCCGAAA+AGG | + | Chr3:66924810-66924829 | MsG0380015214.01.T01:CDS | 50.0% | |
| TGCTTTGGCGTTGTAGAGCT+TGG | - | Chr3:66924069-66924088 | None:intergenic | 50.0% | |
| TTTGGCGTTGTAGAGCTTGG+CGG | - | Chr3:66924066-66924085 | None:intergenic | 50.0% | |
| ! | AAGGGAGCTTCTGGTTGCTA+AGG | + | Chr3:66925220-66925239 | MsG0380015214.01.T01:CDS | 50.0% |
| ! | ACTACACGCCCTTTTCGGAA+TGG | - | Chr3:66924822-66924841 | None:intergenic | 50.0% |
| ! | AGGGAGCTTCTGGTTGCTAA+GGG | + | Chr3:66925221-66925240 | MsG0380015214.01.T01:CDS | 50.0% |
| ! | GAGCTCCCACGAGTGAATTT+TGG | - | Chr3:66924705-66924724 | None:intergenic | 50.0% |
| ! | GGGATTCATCTGATGGATCG+AGG | - | Chr3:66924665-66924684 | None:intergenic | 50.0% |
| !! | AGGGTTCGACTTTTAGAGGG+TGG | - | Chr3:66924093-66924112 | None:intergenic | 50.0% |
| !! | GAAGCATAAGGGCACTGCTT+TGG | + | Chr3:66925163-66925182 | MsG0380015214.01.T01:CDS | 50.0% |
| !! | GTGAATTTTGGCCTGCTAGC+TGG | - | Chr3:66924693-66924712 | None:intergenic | 50.0% |
| AAGCTTCGGCTAAAGCGTGC+TGG | + | Chr3:66924489-66924508 | MsG0380015214.01.T01:CDS | 55.0% | |
| AATCCCATGCTCCAGCTAGC+AGG | + | Chr3:66924679-66924698 | MsG0380015214.01.T01:CDS | 55.0% | |
| ACCTCCGACGATGTCGTTGA+TGG | + | Chr3:66924989-66925008 | MsG0380015214.01.T01:CDS | 55.0% | |
| AGATGGGGTTGGAAGGGTCA+AGG | + | Chr3:66925036-66925055 | MsG0380015214.01.T01:CDS | 55.0% | |
| AGCAAGCGAGAGAAGCTAGC+GGG | + | Chr3:66923991-66924010 | MsG0380015214.01.T01:CDS | 55.0% | |
| ATCTGCGAGAGAAGCAGTGG+CGG | + | Chr3:66924914-66924933 | MsG0380015214.01.T01:CDS | 55.0% | |
| GAGCAAGCGAGAGAAGCTAG+CGG | + | Chr3:66923990-66924009 | MsG0380015214.01.T01:CDS | 55.0% | |
| TCCATCAACGACATCGTCGG+AGG | - | Chr3:66924993-66925012 | None:intergenic | 55.0% | |
| TCGAGACAGCTTCGACGATG+AGG | + | Chr3:66924848-66924867 | MsG0380015214.01.T01:CDS | 55.0% | |
| TGGATCCGACGACACACTAC+TGG | - | Chr3:66924802-66924821 | None:intergenic | 55.0% | |
| !! | TAAAGCGTGCTGGCTCTGCT+TGG | + | Chr3:66924499-66924518 | MsG0380015214.01.T01:CDS | 55.0% |
| AGAAGCGGCAGAAGCTGCAG+CGG | + | Chr3:66924941-66924960 | MsG0380015214.01.T01:CDS | 60.0% | |
| AGAGCTTGGCGGTGTAGAGC+CGG | - | Chr3:66924055-66924074 | None:intergenic | 60.0% | |
| AGCAGTGGCGGCACAAGAAG+CGG | + | Chr3:66924926-66924945 | MsG0380015214.01.T01:CDS | 60.0% | |
| CAAGCATCCAGAGACGGGGA+GGG | + | Chr3:66924887-66924906 | MsG0380015214.01.T01:CDS | 60.0% | |
| GATAATGCCCTCCCCGTCTC+TGG | - | Chr3:66924897-66924916 | None:intergenic | 60.0% | |
| GCTGAAGCTGAGGCTGCAAC+AGG | + | Chr3:66924966-66924985 | MsG0380015214.01.T01:CDS | 60.0% | |
| TGGCCTGCTAGCTGGAGCAT+GGG | - | Chr3:66924685-66924704 | None:intergenic | 60.0% | |
| TTGGCCTGCTAGCTGGAGCA+TGG | - | Chr3:66924686-66924705 | None:intergenic | 60.0% | |
| CCAAGCATCCAGAGACGGGG+AGG | + | Chr3:66924886-66924905 | MsG0380015214.01.T01:CDS | 65.0% | |
| CCTCCCCGTCTCTGGATGCT+TGG | - | Chr3:66924889-66924908 | None:intergenic | 65.0% | |
| GAGCTTGGCGGTGTAGAGCC+GGG | - | Chr3:66924054-66924073 | None:intergenic | 65.0% | |
| TGCAGCGGAGGCTGAAGCTG+AGG | + | Chr3:66924956-66924975 | MsG0380015214.01.T01:CDS | 65.0% | |
| AGCGGCAGAAGCTGCAGCGG+AGG | + | Chr3:66924944-66924963 | MsG0380015214.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 66923934 | 66925295 | 66923934 | ID=MsG0380015214.01;Name=MsG0380015214.01 |
| Chr3 | mRNA | 66923934 | 66925295 | 66923934 | ID=MsG0380015214.01.T01;Parent=MsG0380015214.01;Name=MsG0380015214.01.T01;_AED=0.36;_eAED=0.37;_QI=0|0|0|1|1|1|2|0|350 |
| Chr3 | exon | 66923934 | 66924157 | 66923934 | ID=MsG0380015214.01.T01:exon:13468;Parent=MsG0380015214.01.T01 |
| Chr3 | exon | 66924467 | 66925295 | 66924467 | ID=MsG0380015214.01.T01:exon:13469;Parent=MsG0380015214.01.T01 |
| Chr3 | CDS | 66923934 | 66924157 | 66923934 | ID=MsG0380015214.01.T01:cds;Parent=MsG0380015214.01.T01 |
| Chr3 | CDS | 66924467 | 66925295 | 66924467 | ID=MsG0380015214.01.T01:cds;Parent=MsG0380015214.01.T01 |
| Gene Sequence |
| Protein sequence |
