AlfalfaGEDB | MsG0380015223.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015223.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015223.01.T01	XP_003600710.1	94.167	120	7	0	1	120	88	207	3.82E-65	209

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015223.01.T01	Q0WPN8	57.6	125	50	1	1	122	99	223	1.56E-44	149

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015223.01.T01	G7J9C6	94.167	120	7	0	1	120	88	207	1.82e-65	209

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380015223.01	MsG0680031356.01	0.800619	1.323744e-48	6.192100e-46
MsG0380015223.01	MsG0780041820.01	0.802626	5.130273e-49	2.525145e-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015223.01.T01	MTR_3g065370	94.167	120	7	0	1	120	88	207	4.63e-69	209
MsG0380015223.01.T01	MTR_5g078030	65.833	120	38	1	1	117	90	209	4.84e-44	145
MsG0380015223.01.T01	MTR_8g104990	47.107	121	57	2	4	117	90	210	3.36e-31	112

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015223.01.T01	AT5G37660	57.600	125	50	1	1	122	99	223	1.57e-45	149
MsG0380015223.01.T01	AT5G37660	57.600	125	50	1	1	122	99	223	1.59e-45	149
MsG0380015223.01.T01	AT2G01660	57.983	119	46	2	3	117	94	212	1.34e-41	138
MsG0380015223.01.T01	AT2G01660	57.983	119	46	2	3	117	94	212	1.77e-41	139
MsG0380015223.01.T01	AT2G01660	57.983	119	46	2	3	117	94	212	2.15e-41	139
MsG0380015223.01.T01	AT1G70690	40.678	118	66	1	4	117	98	215	2.91e-26	99.8
MsG0380015223.01.T01	AT3G60720	39.024	123	71	2	3	121	97	219	1.75e-18	78.6
MsG0380015223.01.T01	AT3G60720	39.024	123	71	2	3	121	97	219	3.10e-18	78.2
MsG0380015223.01.T01	AT3G60720	39.024	123	71	2	3	121	97	219	3.41e-18	78.2

Showing 1 to 9 of 9 entries

Previous1Next

Find 47 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACAGCATCTATCGTTCC+CGG	0.461385	3:-67036981	None:intergenic
AAGAAATGTGGGCCTGAAGT+AGG	0.455715	3:+67036951	MsG0380015223.01.T01:CDS
AAGGGAATGGCACAGTGTGT+TGG	0.615028	3:+67037059	MsG0380015223.01.T01:CDS
ACACAGCATCTATCGTTCCC+GGG	0.603589	3:-67036980	None:intergenic
ACGATAGATGCTGTGTTGGG+TGG	0.499063	3:+67036987	MsG0380015223.01.T01:CDS
ACTACGCCGCCGCACACGCC+AGG	0.536702	3:-67036855	None:intergenic
AGAAATGTGGGCCTGAAGTA+GGG	0.540842	3:+67036952	MsG0380015223.01.T01:CDS
AGATGCTGTGTTGGGTGGGT+TGG	0.456176	3:+67036992	MsG0380015223.01.T01:CDS
ATATGTCCTGGCGTGTGCGG+CGG	0.627188	3:+67036849	MsG0380015223.01.T01:CDS
ATTATGGAGATATGTTCTTA+GGG	0.468350	3:+67037158	MsG0380015223.01.T01:CDS

Showing 1 to 10 of 47 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGAGAAATGATTGTCCTTCT+GGG	+	Chr3:67037135-67037154	MsG0380015223.01.T01:CDS	35.0%
TGTCAAGATTGTAGTTTCAG+AGG	+	Chr3:67037101-67037120	MsG0380015223.01.T01:CDS	35.0%
TTGAGAAATGATTGTCCTTC+TGG	+	Chr3:67037134-67037153	MsG0380015223.01.T01:CDS	35.0%
CATATCTCCATAATCCCAGA+AGG	-	Chr3:67037152-67037171	None:intergenic	40.0%
GACAATCATTTCTCAACCGT+CGG	-	Chr3:67037130-67037149	None:intergenic	40.0%
AACACAGCATCTATCGTTCC+CGG	-	Chr3:67036984-67037003	None:intergenic	45.0%
AAGAAATGTGGGCCTGAAGT+AGG	+	Chr3:67036951-67036970	MsG0380015223.01.T01:CDS	45.0%
AGAAATGTGGGCCTGAAGTA+GGG	+	Chr3:67036952-67036971	MsG0380015223.01.T01:CDS	45.0%
GGAACGATAGATGCTGTGTT+GGG	+	Chr3:67036984-67037003	MsG0380015223.01.T01:CDS	45.0%
AAGGGAATGGCACAGTGTGT+TGG	+	Chr3:67037059-67037078	MsG0380015223.01.T01:CDS	50.0%

Showing 1 to 10 of 49 entries

Previous1 2 3 4 5Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	67036798	67037178	67036798	ID=MsG0380015223.01;Name=MsG0380015223.01
Chr3	mRNA	67036798	67037178	67036798	ID=MsG0380015223.01.T01;Parent=MsG0380015223.01;Name=MsG0380015223.01.T01;_AED=0.27;_eAED=0.27;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|126
Chr3	exon	67036798	67037178	67036798	ID=MsG0380015223.01.T01:exon:0;Parent=MsG0380015223.01.T01
Chr3	CDS	67036798	67037178	67036798	ID=MsG0380015223.01.T01:cds;Parent=MsG0380015223.01.T01

Gene Sequence

>MsG0380015223.01.T01

ATGCCAGACTGCTCCTCCTGCATTGCACGCGCTGTCTCACGCACCGGTGACATATGTCCTGGCGTGTGCGGCGGCGTAGTGCAACTAGAAGGATGCTATGTGAAATATGATAATGTTAAGTTTTTAGGCATGGAAGATAAAACGATTGTTTTGAAGAAATGTGGGCCTGAAGTAGGGTATGACCCGGGAACGATAGATGCTGTGTTGGGTGGGTTGGCGGGTTCAGGTGGGTTGTTTAGGGTTGGTGGTTCGGGTCAGTTGAAGGGAATGGCACAGTGTGTTGGCGATTTGAGTTTTGTGGAGTGTCAAGATTGTAGTTTCAGAGGCAACCGACGGTTGAGAAATGATTGTCCTTCTGGGATTATGGAGATATGTTCTTAG

Protein sequence

>MsG0380015223.01.T01

MPDCSSCIARAVSRTGDICPGVCGGVVQLEGCYVKYDNVKFLGMEDKTIVLKKCGPEVGYDPGTIDAVLGGLAGSGGLFRVGGSGQLKGMAQCVGDLSFVECQDCSFRGNRRLRNDCPSGIMEICS*