AlfalfaGEDB | MsG0780041820.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041820.01

KEGG: -
GO: GO:0005737 GO:0006629 GO:0016021 GO:0016627
PFAM: PF06966

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041820.01.T01	XP_013450622.2	94.715	246	10	2	1	243	77	322	1.47E-166	473

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041820.01.T01	A0A072UFT9	94.715	246	10	2	1	243	69	314	2.69e-166	471

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0780041820.01	0.816773	4.652319e-52	3.326933e-49
MsG0180000111.01	MsG0780041820.01	0.815525	8.840269e-52	6.109668e-49
MsG0180001588.01	MsG0780041820.01	0.837758	4.303522e-57	5.646354e-54
MsG0180001719.01	MsG0780041820.01	0.825000	5.948949e-54	5.355649e-51
MsG0180003360.01	MsG0780041820.01	0.804763	1.848331e-49	9.610541e-47
MsG0180004688.01	MsG0780041820.01	0.842932	1.911857e-58	2.943450e-55
MsG0180005621.01	MsG0780041820.01	0.857257	1.846307e-62	4.529031e-59
MsG0180006183.01	MsG0780041820.01	0.804443	2.155378e-49	1.111422e-46
MsG0280006631.01	MsG0780041820.01	0.803754	2.997657e-49	1.518695e-46
MsG0280006666.01	MsG0780041820.01	0.804270	2.341763e-49	1.202177e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041820.01.T01	MTR_7g117475	94.715	246	10	2	1	243	69	314	3.31e-170	471
MsG0780041820.01.T01	MTR_8g023760	70.635	252	60	4	1	243	83	329	1.97e-127	364
MsG0780041820.01.T01	MTR_8g107030	33.702	181	102	7	55	226	87	258	1.44e-13	69.3
MsG0780041820.01.T01	MTR_8g107030	33.702	181	102	7	55	226	118	289	1.98e-13	68.9
MsG0780041820.01.T01	MTR_8g107030	32.571	175	100	7	55	220	87	252	4.97e-12	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041820.01.T01	AT2G46890	64.542	251	77	3	1	243	76	322	7.82e-118	339
MsG0780041820.01.T01	AT1G18180	32.683	205	115	8	28	221	61	253	1.88e-14	71.6
MsG0780041820.01.T01	AT1G18180	32.195	205	116	8	28	221	61	253	2.15e-14	71.6
MsG0780041820.01.T01	AT1G73650	31.797	217	130	9	28	236	61	267	9.19e-12	63.9
MsG0780041820.01.T01	AT1G73650	31.797	217	130	9	28	236	61	267	9.31e-12	63.9
MsG0780041820.01.T01	AT1G73650	31.797	217	130	9	28	236	61	267	1.04e-11	63.9
MsG0780041820.01.T01	AT1G73650	34.437	151	90	5	94	236	36	185	2.11e-11	62.0
MsG0780041820.01.T01	AT1G73650	34.437	151	90	5	94	236	36	185	2.27e-11	61.6

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Find 88 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAGATTGACTAATAGG+AGG	0.543649	7:+95522330	None:intergenic
AAATCAGCCTTTGAACATCT+GGG	0.586715	7:-95521785	MsG0780041820.01.T01:CDS
AACAATATGGAAAACATTGG+TGG	0.523523	7:-95521891	MsG0780041820.01.T01:CDS
AAGGAGATTGACTAATAGGA+GGG	0.480012	7:+95522331	None:intergenic
AAGGGTGGGCTGCATAATAA+TGG	0.377206	7:+95522055	None:intergenic
AATATGGAAAACATTGGTGG+TGG	0.539715	7:-95521888	MsG0780041820.01.T01:CDS
AATCATAGTGAGCCAAAGGG+TGG	0.615234	7:+95522040	None:intergenic
AATGGGGTGCAAGGGAAGAT+TGG	0.438963	7:-95521933	MsG0780041820.01.T01:CDS
AATGGTATGATCCTTGAGAG+TGG	0.682971	7:-95521673	MsG0780041820.01.T01:CDS
ACAAAAGAGTAGAAGCATAT+AGG	0.425663	7:-95521477	MsG0780041820.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATATGGAAAACATTGG+TGG	-	Chr7:95521741-95521760	MsG0780041820.01.T01:CDS	30.0%
ACTGAGTGGATAACATAAAA+GGG	+	Chr7:95521827-95521846	None:intergenic	30.0%
AGAAAAGGAGATTGACTAAT+AGG	+	Chr7:95521308-95521327	None:intergenic	30.0%
AGTGAGTTAGAAGTGATTAA+AGG	+	Chr7:95521417-95521436	None:intergenic	30.0%
AGTTAGAAGTGATTAAAGGA+AGG	+	Chr7:95521413-95521432	None:intergenic	30.0%
TACTGAGTGGATAACATAAA+AGG	+	Chr7:95521828-95521847	None:intergenic	30.0%
TATTGACGTTGAAGAAGAAA+AGG	+	Chr7:95521323-95521342	None:intergenic	30.0%
AAAGGAAGGAAGAAGAGATA+GGG	+	Chr7:95521399-95521418	None:intergenic	35.0%
AAATCAGCCTTTGAACATCT+GGG	-	Chr7:95521847-95521866	MsG0780041820.01.T01:CDS	35.0%
AATATGGAAAACATTGGTGG+TGG	-	Chr7:95521744-95521763	MsG0780041820.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	95521304	95522350	95521304	ID=MsG0780041820.01;Name=MsG0780041820.01
Chr7	mRNA	95521304	95522350	95521304	ID=MsG0780041820.01.T01;Parent=MsG0780041820.01;Name=MsG0780041820.01.T01;_AED=0.17;_eAED=0.17;_QI=80\|1\|1\|1\|0\|0.5\|2\|83\|243
Chr7	exon	95521304	95522118	95521304	ID=MsG0780041820.01.T01:exon:21030;Parent=MsG0780041820.01.T01
Chr7	exon	95522271	95522350	95522271	ID=MsG0780041820.01.T01:exon:21029;Parent=MsG0780041820.01.T01
Chr7	five_prime_UTR	95522271	95522350	95522271	ID=MsG0780041820.01.T01:five_prime_utr;Parent=MsG0780041820.01.T01
Chr7	CDS	95521387	95522118	95521387	ID=MsG0780041820.01.T01:cds;Parent=MsG0780041820.01.T01
Chr7	three_prime_UTR	95521304	95521386	95521304	ID=MsG0780041820.01.T01:three_prime_utr;Parent=MsG0780041820.01.T01

Gene Sequence

>MsG0780041820.01.T01

ATGATTGACCCTTATTGGACAGTGATACCTGTGATGCTTGTCCATTATTATGCAGCCCACCCTTTGGCTCACTATGATTTCTGGAGATCAAGGATAGTGATCCTGTTGACTTGGGTGTGGAGTATTAGACTCATCCACAACTACTTCAGACGAGAGAAGTGGCAATGGGGTGCAAGGGAAGATTGGCGTTTCACTGATATGATTCAACAATATGGAAAACATTGGTGGTGGGCTTCCTTCTTCTCCATCTACCTACCTCACCAGTTATTGCTCATTGGATTGTCACTTCCCTTTTATGTTATCCACTCAGTAAATCAGCCTTTGAACATCTGGGACTTGGTAGCTGTTGTTGTGTGTGTATCTGGCATCCTCATAGCATACTTTGCAGATAATCAGCTTTACAATTTTGTGAATAACAATGGTAATGGTATGATCCTTGAGAGTGGTTTGTGGTACTATACTCGGAATCCTAATTACTTTGGTGAGCAGCTATGGTGGTGGGGACTTGTAGTATTTGGTTGGAACTTGGGGCATGGGTGGACCTTTATAGGAGCATTGCTCAACACAATGTGTTTGGGTTATGTGACCAAACTTGTGGAACAAAGAATGTTGAAACAAGACAAAAGAGTAGAAGCATATAGGAAGTATCAGAACACAACTTCTGTATGGATCCCCTGCTTCAAGTTCAACTCATCTGCTAATTTACCACTCAAAAAAACTAAGAATGCCTGA

Protein sequence

>MsG0780041820.01.T01

MIDPYWTVIPVMLVHYYAAHPLAHYDFWRSRIVILLTWVWSIRLIHNYFRREKWQWGAREDWRFTDMIQQYGKHWWWASFFSIYLPHQLLLIGLSLPFYVIHSVNQPLNIWDLVAVVVCVSGILIAYFADNQLYNFVNNNGNGMILESGLWYYTRNPNYFGEQLWWWGLVVFGWNLGHGWTFIGALLNTMCLGYVTKLVEQRMLKQDKRVEAYRKYQNTTSVWIPCFKFNSSANLPLKKTKNA*