Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041820.01.T01 | XP_013450622.2 | 94.715 | 246 | 10 | 2 | 1 | 243 | 77 | 322 | 1.47E-166 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041820.01.T01 | A0A072UFT9 | 94.715 | 246 | 10 | 2 | 1 | 243 | 69 | 314 | 2.69e-166 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0780041820.01 | 0.816773 | 4.652319e-52 | 3.326933e-49 |
| MsG0180000111.01 | MsG0780041820.01 | 0.815525 | 8.840269e-52 | 6.109668e-49 |
| MsG0180001588.01 | MsG0780041820.01 | 0.837758 | 4.303522e-57 | 5.646354e-54 |
| MsG0180001719.01 | MsG0780041820.01 | 0.825000 | 5.948949e-54 | 5.355649e-51 |
| MsG0180003360.01 | MsG0780041820.01 | 0.804763 | 1.848331e-49 | 9.610541e-47 |
| MsG0180004688.01 | MsG0780041820.01 | 0.842932 | 1.911857e-58 | 2.943450e-55 |
| MsG0180005621.01 | MsG0780041820.01 | 0.857257 | 1.846307e-62 | 4.529031e-59 |
| MsG0180006183.01 | MsG0780041820.01 | 0.804443 | 2.155378e-49 | 1.111422e-46 |
| MsG0780040459.01 | MsG0780041820.01 | 0.879550 | 1.137582e-69 | 6.192424e-66 |
| MsG0780040554.01 | MsG0780041820.01 | 0.803790 | 2.947090e-49 | 1.494445e-46 |
| MsG0780041008.01 | MsG0780041820.01 | 0.808639 | 2.805773e-50 | 1.612636e-47 |
| MsG0780041100.01 | MsG0780041820.01 | 0.820217 | 7.706687e-53 | 6.060619e-50 |
| MsG0780041271.01 | MsG0780041820.01 | 0.815563 | 8.670139e-52 | 5.998195e-49 |
| MsG0780041820.01 | MsG0880041903.01 | 0.809515 | 1.821115e-50 | 1.071423e-47 |
| MsG0780041820.01 | MsG0880043948.01 | 0.815330 | 9.769276e-52 | 6.715603e-49 |
| MsG0780041820.01 | MsG0880045802.01 | 0.810150 | 1.329941e-50 | 7.956185e-48 |
| MsG0780041820.01 | MsG0880046993.01 | 0.812320 | 4.499609e-51 | 2.851902e-48 |
| MsG0780041820.01 | MsG0880047681.01 | 0.843645 | 1.233945e-58 | 1.943412e-55 |
| MsG0280010825.01 | MsG0780041820.01 | 0.830101 | 3.548653e-55 | 3.702479e-52 |
| MsG0380011756.01 | MsG0780041820.01 | 0.838914 | 2.166280e-57 | 2.943780e-54 |
| MsG0380014542.01 | MsG0780041820.01 | 0.836529 | 8.871792e-57 | 1.121043e-53 |
| MsG0380014544.01 | MsG0780041820.01 | 0.850612 | 1.517322e-60 | 2.988925e-57 |
| MsG0680031356.01 | MsG0780041820.01 | 0.845500 | 3.907029e-59 | 6.523910e-56 |
| MsG0680035349.01 | MsG0780041820.01 | 0.802002 | 6.897396e-49 | 3.341314e-46 |
| MsG0480020937.01 | MsG0780041820.01 | 0.830360 | 3.068110e-55 | 3.225370e-52 |
| MsG0480021100.01 | MsG0780041820.01 | 0.804005 | 2.658615e-49 | 1.355661e-46 |
| MsG0480021456.01 | MsG0780041820.01 | 0.823789 | 1.146678e-53 | 9.972571e-51 |
| MsG0480021486.01 | MsG0780041820.01 | 0.802360 | 5.820513e-49 | 2.845683e-46 |
| MsG0480021740.01 | MsG0780041820.01 | 0.813994 | 1.930748e-51 | 1.279977e-48 |
| MsG0480021773.01 | MsG0780041820.01 | 0.845975 | 2.903789e-59 | 4.924319e-56 |
| MsG0480022378.01 | MsG0780041820.01 | 0.879284 | 1.412341e-69 | 7.614420e-66 |
| MsG0480023532.01 | MsG0780041820.01 | 0.865166 | 7.191657e-65 | 2.317377e-61 |
| MsG0480023575.01 | MsG0780041820.01 | 0.822706 | 2.052584e-53 | 1.731170e-50 |
| MsG0480023842.01 | MsG0780041820.01 | 0.802065 | 6.694827e-49 | 3.248451e-46 |
| MsG0480023913.01 | MsG0780041820.01 | 0.830570 | 2.726598e-55 | 2.883664e-52 |
| MsG0480024019.01 | MsG0780041820.01 | 0.830709 | 2.520830e-55 | 2.677176e-52 |
| MsG0580024276.01 | MsG0780041820.01 | 0.822342 | 2.494200e-53 | 2.081973e-50 |
| MsG0380015223.01 | MsG0780041820.01 | 0.802626 | 5.130273e-49 | 2.525145e-46 |
| MsG0380015552.01 | MsG0780041820.01 | 0.820260 | 7.535021e-53 | 5.932764e-50 |
| MsG0380015954.01 | MsG0780041820.01 | 0.800418 | 1.454605e-48 | 6.769873e-46 |
| MsG0380016819.01 | MsG0780041820.01 | 0.826961 | 2.035619e-54 | 1.938052e-51 |
| MsG0380017150.01 | MsG0780041820.01 | 0.819490 | 1.130137e-52 | 8.709548e-50 |
| MsG0380017380.01 | MsG0780041820.01 | 0.832959 | 7.017043e-56 | 7.966232e-53 |
| MsG0380017416.01 | MsG0780041820.01 | 0.837957 | 3.825332e-57 | 5.049319e-54 |
| MsG0380017440.01 | MsG0780041820.01 | 0.800603 | 1.333962e-48 | 6.237276e-46 |
| MsG0380017666.01 | MsG0780041820.01 | 0.810640 | 1.042719e-50 | 6.319272e-48 |
| MsG0480018228.01 | MsG0780041820.01 | 0.814900 | 1.217570e-51 | 8.271774e-49 |
| MsG0580028916.01 | MsG0780041820.01 | 0.811366 | 7.257598e-51 | 4.483820e-48 |
| MsG0280006631.01 | MsG0780041820.01 | 0.803754 | 2.997657e-49 | 1.518695e-46 |
| MsG0280006666.01 | MsG0780041820.01 | 0.804270 | 2.341763e-49 | 1.202177e-46 |
| MsG0280006909.01 | MsG0780041820.01 | 0.837799 | 4.200074e-57 | 5.517175e-54 |
| MsG0280007695.01 | MsG0780041820.01 | 0.848713 | 5.142108e-60 | 9.521925e-57 |
| MsG0280008407.01 | MsG0780041820.01 | 0.810667 | 1.028758e-50 | 6.239345e-48 |
| MsG0280009980.01 | MsG0780041820.01 | 0.839377 | 1.643111e-57 | 2.264990e-54 |
| MsG0780035917.01 | MsG0780041820.01 | 0.867895 | 9.768015e-66 | 3.465848e-62 |
| MsG0780038736.01 | MsG0780041820.01 | 0.804513 | 2.083746e-49 | 1.076405e-46 |
| MsG0780039536.01 | MsG0780041820.01 | 0.821826 | 3.284007e-53 | 2.701269e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041820.01.T01 | MTR_7g117475 | 94.715 | 246 | 10 | 2 | 1 | 243 | 69 | 314 | 3.31e-170 | 471 |
| MsG0780041820.01.T01 | MTR_8g023760 | 70.635 | 252 | 60 | 4 | 1 | 243 | 83 | 329 | 1.97e-127 | 364 |
| MsG0780041820.01.T01 | MTR_8g107030 | 33.702 | 181 | 102 | 7 | 55 | 226 | 87 | 258 | 1.44e-13 | 69.3 |
| MsG0780041820.01.T01 | MTR_8g107030 | 33.702 | 181 | 102 | 7 | 55 | 226 | 118 | 289 | 1.98e-13 | 68.9 |
| MsG0780041820.01.T01 | MTR_8g107030 | 32.571 | 175 | 100 | 7 | 55 | 220 | 87 | 252 | 4.97e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780041820.01.T01 | AT2G46890 | 64.542 | 251 | 77 | 3 | 1 | 243 | 76 | 322 | 7.82e-118 | 339 |
| MsG0780041820.01.T01 | AT1G18180 | 32.683 | 205 | 115 | 8 | 28 | 221 | 61 | 253 | 1.88e-14 | 71.6 |
| MsG0780041820.01.T01 | AT1G18180 | 32.195 | 205 | 116 | 8 | 28 | 221 | 61 | 253 | 2.15e-14 | 71.6 |
| MsG0780041820.01.T01 | AT1G73650 | 31.797 | 217 | 130 | 9 | 28 | 236 | 61 | 267 | 9.19e-12 | 63.9 |
| MsG0780041820.01.T01 | AT1G73650 | 31.797 | 217 | 130 | 9 | 28 | 236 | 61 | 267 | 9.31e-12 | 63.9 |
| MsG0780041820.01.T01 | AT1G73650 | 31.797 | 217 | 130 | 9 | 28 | 236 | 61 | 267 | 1.04e-11 | 63.9 |
| MsG0780041820.01.T01 | AT1G73650 | 34.437 | 151 | 90 | 5 | 94 | 236 | 36 | 185 | 2.11e-11 | 62.0 |
| MsG0780041820.01.T01 | AT1G73650 | 34.437 | 151 | 90 | 5 | 94 | 236 | 36 | 185 | 2.27e-11 | 61.6 |
Find 88 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGGCTCACTATGATTTC+TGG | 0.120398 | 7:-95522035 | MsG0780041820.01.T01:CDS |
| TGCAGATGATTGACCCTTAT+TGG | 0.153787 | 7:-95522101 | MsG0780041820.01.T01:intron |
| GGGCATGGGTGGACCTTTAT+AGG | 0.223333 | 7:-95521568 | MsG0780041820.01.T01:CDS |
| AGAAAAGGAGATTGACTAAT+AGG | 0.224743 | 7:+95522327 | None:intergenic |
| TACTGAGTGGATAACATAAA+AGG | 0.250782 | 7:+95521807 | None:intergenic |
| TGGTGGGGACTTGTAGTATT+TGG | 0.269007 | 7:-95521601 | MsG0780041820.01.T01:CDS |
| CATTCTTTGTTCCACAAGTT+TGG | 0.288006 | 7:+95521510 | None:intergenic |
| GCTGTTGTTGTGTGTGTATC+TGG | 0.295142 | 7:-95521754 | MsG0780041820.01.T01:CDS |
| ACTGATATGATTCAACAATA+TGG | 0.297749 | 7:-95521904 | MsG0780041820.01.T01:CDS |
| TCAACGTCAATATCCTCTTT+TGG | 0.304991 | 7:-95522301 | MsG0780041820.01.T01:five_prime_UTR |
| ACAGGTATCACTGTCCAATA+AGG | 0.308159 | 7:+95522087 | None:intergenic |
| ATTGCTCAACACAATGTGTT+TGG | 0.338794 | 7:-95521542 | MsG0780041820.01.T01:CDS |
| TTGGTTGGAACTTGGGGCAT+GGG | 0.350925 | 7:-95521582 | MsG0780041820.01.T01:CDS |
| TAAATCAGCCTTTGAACATC+TGG | 0.357916 | 7:-95521786 | MsG0780041820.01.T01:CDS |
| AGCTGCTCACCAAAGTAATT+AGG | 0.361585 | 7:+95521628 | None:intergenic |
| CCTCACCAGTTATTGCTCAT+TGG | 0.368116 | 7:-95521841 | MsG0780041820.01.T01:CDS |
| AAGGGTGGGCTGCATAATAA+TGG | 0.377206 | 7:+95522055 | None:intergenic |
| TGTAGTATTTGGTTGGAACT+TGG | 0.385747 | 7:-95521590 | MsG0780041820.01.T01:CDS |
| TTATTATGCAGCCCACCCTT+TGG | 0.386930 | 7:-95522052 | MsG0780041820.01.T01:CDS |
| TTGCTCAACACAATGTGTTT+GGG | 0.407007 | 7:-95521541 | MsG0780041820.01.T01:CDS |
| TTTGGTTGGAACTTGGGGCA+TGG | 0.421477 | 7:-95521583 | MsG0780041820.01.T01:CDS |
| GTAGTATTTGGTTGGAACTT+GGG | 0.421705 | 7:-95521589 | MsG0780041820.01.T01:CDS |
| ACAAAAGAGTAGAAGCATAT+AGG | 0.425663 | 7:-95521477 | MsG0780041820.01.T01:CDS |
| TACTCCACACCCAAGTCAAC+AGG | 0.431420 | 7:+95521995 | None:intergenic |
| GCCTTTGAACATCTGGGACT+TGG | 0.435472 | 7:-95521779 | MsG0780041820.01.T01:CDS |
| AATGGGGTGCAAGGGAAGAT+TGG | 0.438963 | 7:-95521933 | MsG0780041820.01.T01:CDS |
| CTCTAATCCAATCCAGCCAC+TGG | 0.442107 | 7:-95522271 | MsG0780041820.01.T01:five_prime_UTR |
| TTTGTGAATAACAATGGTAA+TGG | 0.445517 | 7:-95521691 | MsG0780041820.01.T01:CDS |
| TATTGACGTTGAAGAAGAAA+AGG | 0.446845 | 7:+95522312 | None:intergenic |
| ACAATCCAATGAGCAATAAC+TGG | 0.447606 | 7:+95521836 | None:intergenic |
| TAGTATTTGGTTGGAACTTG+GGG | 0.450578 | 7:-95521588 | MsG0780041820.01.T01:CDS |
| GTTGGAACTTGGGGCATGGG+TGG | 0.451857 | 7:-95521579 | MsG0780041820.01.T01:CDS |
| AGGTAGGTAGATGGAGAAGA+AGG | 0.452132 | 7:+95521861 | None:intergenic |
| GTTGAGCAATGCTCCTATAA+AGG | 0.453733 | 7:+95521555 | None:intergenic |
| TACCCACCCAGTGGCTGGAT+TGG | 0.456487 | 7:+95522264 | None:intergenic |
| AGGGATACCCACCCAGTGGC+TGG | 0.457630 | 7:+95522259 | None:intergenic |
| ATTACTTTGGTGAGCAGCTA+TGG | 0.459668 | 7:-95521624 | MsG0780041820.01.T01:CDS |
| GGGGACTTGTAGTATTTGGT+TGG | 0.460375 | 7:-95521597 | MsG0780041820.01.T01:CDS |
| ACTCGGAATCCTAATTACTT+TGG | 0.476296 | 7:-95521637 | MsG0780041820.01.T01:CDS |
| CTTATTTATATTCAACTTGG+TGG | 0.477890 | 7:-95521308 | MsG0780041820.01.T01:three_prime_UTR |
| CAGACGAGAGAAGTGGCAAT+GGG | 0.479915 | 7:-95521950 | MsG0780041820.01.T01:CDS |
| AAGGAGATTGACTAATAGGA+GGG | 0.480012 | 7:+95522331 | None:intergenic |
| ACTATGATTTCTGGAGATCA+AGG | 0.489125 | 7:-95522026 | MsG0780041820.01.T01:CDS |
| TGGTGAGCAGCTATGGTGGT+GGG | 0.489748 | 7:-95521617 | MsG0780041820.01.T01:CDS |
| TAACTGGTGAGGTAGGTAGA+TGG | 0.495738 | 7:+95521852 | None:intergenic |
| ATCAGAACACAACTTCTGTA+TGG | 0.498222 | 7:-95521450 | MsG0780041820.01.T01:CDS |
| ACTGAGTGGATAACATAAAA+GGG | 0.503941 | 7:+95521808 | None:intergenic |
| TTGGTGAGCAGCTATGGTGG+TGG | 0.505228 | 7:-95521618 | MsG0780041820.01.T01:CDS |
| CAGGTATCACTGTCCAATAA+GGG | 0.506881 | 7:+95522088 | None:intergenic |
| AGATGAGTTGAACTTGAAGC+AGG | 0.514693 | 7:+95521423 | None:intergenic |
| AGAAGTGGCAATGGGGTGCA+AGG | 0.516645 | 7:-95521942 | MsG0780041820.01.T01:CDS |
| TTATTTATATTCAACTTGGT+GGG | 0.519183 | 7:-95521307 | MsG0780041820.01.T01:three_prime_UTR |
| AACAATATGGAAAACATTGG+TGG | 0.523523 | 7:-95521891 | MsG0780041820.01.T01:CDS |
| TGATCCTTGAGAGTGGTTTG+TGG | 0.530278 | 7:-95521666 | MsG0780041820.01.T01:CDS |
| AATATGGAAAACATTGGTGG+TGG | 0.539715 | 7:-95521888 | MsG0780041820.01.T01:CDS |
| AAAGGAGATTGACTAATAGG+AGG | 0.543649 | 7:+95522330 | None:intergenic |
| TAATAATGGACAAGCATCAC+AGG | 0.547440 | 7:+95522069 | None:intergenic |
| TCACTTATTTATATTCAACT+TGG | 0.550101 | 7:-95521311 | MsG0780041820.01.T01:three_prime_UTR |
| GGTGAGCAGCTATGGTGGTG+GGG | 0.554190 | 7:-95521616 | MsG0780041820.01.T01:CDS |
| TGATCCTGTTGACTTGGGTG+TGG | 0.558189 | 7:-95521999 | MsG0780041820.01.T01:CDS |
| GGGTTATGTGACCAAACTTG+TGG | 0.558732 | 7:-95521521 | MsG0780041820.01.T01:CDS |
| GGATAGTGATCCTGTTGACT+TGG | 0.567382 | 7:-95522005 | MsG0780041820.01.T01:CDS |
| CAGAAATCATAGTGAGCCAA+AGG | 0.576012 | 7:+95522036 | None:intergenic |
| TCTCTCGTCTGAAGTAGTTG+TGG | 0.584105 | 7:+95521962 | None:intergenic |
| AAATCAGCCTTTGAACATCT+GGG | 0.586715 | 7:-95521785 | MsG0780041820.01.T01:CDS |
| ACCAAGTCCCAGATGTTCAA+AGG | 0.590896 | 7:+95521778 | None:intergenic |
| TCTAATCCAATCCAGCCACT+GGG | 0.595973 | 7:-95522270 | MsG0780041820.01.T01:intron |
| GATGAGTTGAACTTGAAGCA+GGG | 0.598199 | 7:+95521424 | None:intergenic |
| TGAGCAATAACTGGTGAGGT+AGG | 0.598678 | 7:+95521845 | None:intergenic |
| TTAGAGCAATGAGCCAAAAG+AGG | 0.601716 | 7:+95522288 | None:intergenic |
| AGAAATCATAGTGAGCCAAA+GGG | 0.603318 | 7:+95522037 | None:intergenic |
| GAAGTGGCAATGGGGTGCAA+GGG | 0.603591 | 7:-95521941 | MsG0780041820.01.T01:CDS |
| ATCATAGTGAGCCAAAGGGT+GGG | 0.605285 | 7:+95522041 | None:intergenic |
| TTCAACAATATGGAAAACAT+TGG | 0.608096 | 7:-95521894 | MsG0780041820.01.T01:CDS |
| TCAGACGAGAGAAGTGGCAA+TGG | 0.611058 | 7:-95521951 | MsG0780041820.01.T01:CDS |
| ATGAGTTGAACTTGAAGCAG+GGG | 0.615221 | 7:+95521425 | None:intergenic |
| AATCATAGTGAGCCAAAGGG+TGG | 0.615234 | 7:+95522040 | None:intergenic |
| GTGGTTTGTGGTACTATACT+CGG | 0.616688 | 7:-95521654 | MsG0780041820.01.T01:CDS |
| AGTACCACAAACCACTCTCA+AGG | 0.625195 | 7:+95521662 | None:intergenic |
| ATATGGAAAACATTGGTGGT+GGG | 0.626188 | 7:-95521887 | MsG0780041820.01.T01:CDS |
| TCAAAGGCTGATTTACTGAG+TGG | 0.626720 | 7:+95521794 | None:intergenic |
| ACTACTTCAGACGAGAGAAG+TGG | 0.633464 | 7:-95521957 | MsG0780041820.01.T01:CDS |
| GATAGTGATCCTGTTGACTT+GGG | 0.636502 | 7:-95522004 | MsG0780041820.01.T01:CDS |
| CCAATGAGCAATAACTGGTG+AGG | 0.640552 | 7:+95521841 | None:intergenic |
| ACTTTGGTGAGCAGCTATGG+TGG | 0.658770 | 7:-95521621 | MsG0780041820.01.T01:CDS |
| TATCTGCAAAGTATGCTATG+AGG | 0.672642 | 7:+95521728 | None:intergenic |
| AATGGTATGATCCTTGAGAG+TGG | 0.682971 | 7:-95521673 | MsG0780041820.01.T01:CDS |
| AGACGAGAGAAGTGGCAATG+GGG | 0.720125 | 7:-95521949 | MsG0780041820.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAGAAAAAGAAGGA+TGG | + | Chr7:95522272-95522291 | None:intergenic | 20.0% |
| !! | CAACAAAAAATAGAAAAAGA+AGG | + | Chr7:95522276-95522295 | None:intergenic | 20.0% |
| !! | TCACTTATTTATATTCAACT+TGG | - | Chr7:95522321-95522340 | MsG0780041820.01.T01:five_prime_UTR | 20.0% |
| !! | TTATTTATATTCAACTTGGT+GGG | - | Chr7:95522325-95522344 | MsG0780041820.01.T01:five_prime_UTR | 20.0% |
| !!! | TACAATTTTGTGAATAACAA+TGG | - | Chr7:95521935-95521954 | MsG0780041820.01.T01:CDS | 20.0% |
| ! | ACTGATATGATTCAACAATA+TGG | - | Chr7:95521728-95521747 | MsG0780041820.01.T01:CDS | 25.0% |
| ! | CTTATTTATATTCAACTTGG+TGG | - | Chr7:95522324-95522343 | MsG0780041820.01.T01:five_prime_UTR | 25.0% |
| ! | TTCAACAATATGGAAAACAT+TGG | - | Chr7:95521738-95521757 | MsG0780041820.01.T01:CDS | 25.0% |
| ! | TTTGTGAATAACAATGGTAA+TGG | - | Chr7:95521941-95521960 | MsG0780041820.01.T01:CDS | 25.0% |
| AACAATATGGAAAACATTGG+TGG | - | Chr7:95521741-95521760 | MsG0780041820.01.T01:CDS | 30.0% | |
| ACTGAGTGGATAACATAAAA+GGG | + | Chr7:95521827-95521846 | None:intergenic | 30.0% | |
| AGAAAAGGAGATTGACTAAT+AGG | + | Chr7:95521308-95521327 | None:intergenic | 30.0% | |
| AGTGAGTTAGAAGTGATTAA+AGG | + | Chr7:95521417-95521436 | None:intergenic | 30.0% | |
| AGTTAGAAGTGATTAAAGGA+AGG | + | Chr7:95521413-95521432 | None:intergenic | 30.0% | |
| TACTGAGTGGATAACATAAA+AGG | + | Chr7:95521828-95521847 | None:intergenic | 30.0% | |
| TATTGACGTTGAAGAAGAAA+AGG | + | Chr7:95521323-95521342 | None:intergenic | 30.0% | |
| ! | ACAAAAGAGTAGAAGCATAT+AGG | - | Chr7:95522155-95522174 | MsG0780041820.01.T01:intron | 30.0% |
| !!! | GCATTCTTAGTTTTTTTGAG+TGG | + | Chr7:95522244-95522263 | None:intergenic | 30.0% |
| AAAGGAAGGAAGAAGAGATA+GGG | + | Chr7:95521399-95521418 | None:intergenic | 35.0% | |
| AAATCAGCCTTTGAACATCT+GGG | - | Chr7:95521847-95521866 | MsG0780041820.01.T01:CDS | 35.0% | |
| AATATGGAAAACATTGGTGG+TGG | - | Chr7:95521744-95521763 | MsG0780041820.01.T01:CDS | 35.0% | |
| ACAATCCAATGAGCAATAAC+TGG | + | Chr7:95521799-95521818 | None:intergenic | 35.0% | |
| ACTCGGAATCCTAATTACTT+TGG | - | Chr7:95521995-95522014 | MsG0780041820.01.T01:CDS | 35.0% | |
| AGAAATCATAGTGAGCCAAA+GGG | + | Chr7:95521598-95521617 | None:intergenic | 35.0% | |
| ATCAGAACACAACTTCTGTA+TGG | - | Chr7:95522182-95522201 | MsG0780041820.01.T01:intron | 35.0% | |
| ATTGCTCAACACAATGTGTT+TGG | - | Chr7:95522090-95522109 | MsG0780041820.01.T01:CDS | 35.0% | |
| CATTCTTTGTTCCACAAGTT+TGG | + | Chr7:95522125-95522144 | None:intergenic | 35.0% | |
| GTAGTATTTGGTTGGAACTT+GGG | - | Chr7:95522043-95522062 | MsG0780041820.01.T01:CDS | 35.0% | |
| TAAAGGAAGGAAGAAGAGAT+AGG | + | Chr7:95521400-95521419 | None:intergenic | 35.0% | |
| TAAATCAGCCTTTGAACATC+TGG | - | Chr7:95521846-95521865 | MsG0780041820.01.T01:CDS | 35.0% | |
| TAGAAAAAGAAGGATGGATC+AGG | + | Chr7:95522266-95522285 | None:intergenic | 35.0% | |
| TAGTATTTGGTTGGAACTTG+GGG | - | Chr7:95522044-95522063 | MsG0780041820.01.T01:CDS | 35.0% | |
| TATCTGCAAAGTATGCTATG+AGG | + | Chr7:95521907-95521926 | None:intergenic | 35.0% | |
| TGTAGTATTTGGTTGGAACT+TGG | - | Chr7:95522042-95522061 | MsG0780041820.01.T01:CDS | 35.0% | |
| TTGCTCAACACAATGTGTTT+GGG | - | Chr7:95522091-95522110 | MsG0780041820.01.T01:CDS | 35.0% | |
| ! | ACTATGATTTCTGGAGATCA+AGG | - | Chr7:95521606-95521625 | MsG0780041820.01.T01:CDS | 35.0% |
| ! | ATATGGAAAACATTGGTGGT+GGG | - | Chr7:95521745-95521764 | MsG0780041820.01.T01:CDS | 35.0% |
| ! | TCAACGTCAATATCCTCTTT+TGG | - | Chr7:95521331-95521350 | MsG0780041820.01.T01:three_prime_UTR | 35.0% |
| !! | TAATAATGGACAAGCATCAC+AGG | + | Chr7:95521566-95521585 | None:intergenic | 35.0% |
| AATGGTATGATCCTTGAGAG+TGG | - | Chr7:95521959-95521978 | MsG0780041820.01.T01:CDS | 40.0% | |
| ACAGGTATCACTGTCCAATA+AGG | + | Chr7:95521548-95521567 | None:intergenic | 40.0% | |
| AGCTGCTCACCAAAGTAATT+AGG | + | Chr7:95522007-95522026 | None:intergenic | 40.0% | |
| ATTACTTTGGTGAGCAGCTA+TGG | - | Chr7:95522008-95522027 | MsG0780041820.01.T01:CDS | 40.0% | |
| CAGAAATCATAGTGAGCCAA+AGG | + | Chr7:95521599-95521618 | None:intergenic | 40.0% | |
| CAGGTATCACTGTCCAATAA+GGG | + | Chr7:95521547-95521566 | None:intergenic | 40.0% | |
| GTTGAGCAATGCTCCTATAA+AGG | + | Chr7:95522080-95522099 | None:intergenic | 40.0% | |
| TGCAGATGATTGACCCTTAT+TGG | - | Chr7:95521531-95521550 | MsG0780041820.01.T01:CDS | 40.0% | |
| TTAGAGCAATGAGCCAAAAG+AGG | + | Chr7:95521347-95521366 | None:intergenic | 40.0% | |
| ! | AGATGAGTTGAACTTGAAGC+AGG | + | Chr7:95522212-95522231 | None:intergenic | 40.0% |
| ! | ATGAGTTGAACTTGAAGCAG+GGG | + | Chr7:95522210-95522229 | None:intergenic | 40.0% |
| ! | CTTTGGCTCACTATGATTTC+TGG | - | Chr7:95521597-95521616 | MsG0780041820.01.T01:CDS | 40.0% |
| ! | GATGAGTTGAACTTGAAGCA+GGG | + | Chr7:95522211-95522230 | None:intergenic | 40.0% |
| ! | GTGGTTTGTGGTACTATACT+CGG | - | Chr7:95521978-95521997 | MsG0780041820.01.T01:CDS | 40.0% |
| ! | TCAAAGGCTGATTTACTGAG+TGG | + | Chr7:95521841-95521860 | None:intergenic | 40.0% |
| !! | GATAGTGATCCTGTTGACTT+GGG | - | Chr7:95521628-95521647 | MsG0780041820.01.T01:CDS | 40.0% |
| AATCATAGTGAGCCAAAGGG+TGG | + | Chr7:95521595-95521614 | None:intergenic | 45.0% | |
| ACCAAGTCCCAGATGTTCAA+AGG | + | Chr7:95521857-95521876 | None:intergenic | 45.0% | |
| ACTACTTCAGACGAGAGAAG+TGG | - | Chr7:95521675-95521694 | MsG0780041820.01.T01:CDS | 45.0% | |
| AGGTAGGTAGATGGAGAAGA+AGG | + | Chr7:95521774-95521793 | None:intergenic | 45.0% | |
| AGTACCACAAACCACTCTCA+AGG | + | Chr7:95521973-95521992 | None:intergenic | 45.0% | |
| ATCATAGTGAGCCAAAGGGT+GGG | + | Chr7:95521594-95521613 | None:intergenic | 45.0% | |
| CCAATGAGCAATAACTGGTG+AGG | + | Chr7:95521794-95521813 | None:intergenic | 45.0% | |
| CCTCACCAGTTATTGCTCAT+TGG | - | Chr7:95521791-95521810 | MsG0780041820.01.T01:CDS | 45.0% | |
| GAAGGAAGAAGAGATAGGGA+GGG | + | Chr7:95521395-95521414 | None:intergenic | 45.0% | |
| GCTGTTGTTGTGTGTGTATC+TGG | - | Chr7:95521878-95521897 | MsG0780041820.01.T01:CDS | 45.0% | |
| GGGGACTTGTAGTATTTGGT+TGG | - | Chr7:95522035-95522054 | MsG0780041820.01.T01:CDS | 45.0% | |
| GGGTTATGTGACCAAACTTG+TGG | - | Chr7:95522111-95522130 | MsG0780041820.01.T01:intron | 45.0% | |
| TAACTGGTGAGGTAGGTAGA+TGG | + | Chr7:95521783-95521802 | None:intergenic | 45.0% | |
| TCTAATCCAATCCAGCCACT+GGG | - | Chr7:95521362-95521381 | MsG0780041820.01.T01:three_prime_UTR | 45.0% | |
| TGAGCAATAACTGGTGAGGT+AGG | + | Chr7:95521790-95521809 | None:intergenic | 45.0% | |
| TGATCCTTGAGAGTGGTTTG+TGG | - | Chr7:95521966-95521985 | MsG0780041820.01.T01:CDS | 45.0% | |
| TGGTGGGGACTTGTAGTATT+TGG | - | Chr7:95522031-95522050 | MsG0780041820.01.T01:CDS | 45.0% | |
| TTATTATGCAGCCCACCCTT+TGG | - | Chr7:95521580-95521599 | MsG0780041820.01.T01:CDS | 45.0% | |
| ! | GGATAGTGATCCTGTTGACT+TGG | - | Chr7:95521627-95521646 | MsG0780041820.01.T01:CDS | 45.0% |
| ! | TCTCTCGTCTGAAGTAGTTG+TGG | + | Chr7:95521673-95521692 | None:intergenic | 45.0% |
| !! | AAGGGTGGGCTGCATAATAA+TGG | + | Chr7:95521580-95521599 | None:intergenic | 45.0% |
| AATGGGGTGCAAGGGAAGAT+TGG | - | Chr7:95521699-95521718 | MsG0780041820.01.T01:CDS | 50.0% | |
| ACTTTGGTGAGCAGCTATGG+TGG | - | Chr7:95522011-95522030 | MsG0780041820.01.T01:CDS | 50.0% | |
| AGACGAGAGAAGTGGCAATG+GGG | - | Chr7:95521683-95521702 | MsG0780041820.01.T01:CDS | 50.0% | |
| CAGACGAGAGAAGTGGCAAT+GGG | - | Chr7:95521682-95521701 | MsG0780041820.01.T01:CDS | 50.0% | |
| CTCTAATCCAATCCAGCCAC+TGG | - | Chr7:95521361-95521380 | MsG0780041820.01.T01:three_prime_UTR | 50.0% | |
| GGAAGGAAGAAGAGATAGGG+AGG | + | Chr7:95521396-95521415 | None:intergenic | 50.0% | |
| TACTCCACACCCAAGTCAAC+AGG | + | Chr7:95521640-95521659 | None:intergenic | 50.0% | |
| TCAGACGAGAGAAGTGGCAA+TGG | - | Chr7:95521681-95521700 | MsG0780041820.01.T01:CDS | 50.0% | |
| TTGGTTGGAACTTGGGGCAT+GGG | - | Chr7:95522050-95522069 | MsG0780041820.01.T01:CDS | 50.0% | |
| TTTGGTTGGAACTTGGGGCA+TGG | - | Chr7:95522049-95522068 | MsG0780041820.01.T01:CDS | 50.0% | |
| ! | GCCTTTGAACATCTGGGACT+TGG | - | Chr7:95521853-95521872 | MsG0780041820.01.T01:CDS | 50.0% |
| !! | TGATCCTGTTGACTTGGGTG+TGG | - | Chr7:95521633-95521652 | MsG0780041820.01.T01:CDS | 50.0% |
| AATCCAATCCAGCCACTGGG+TGG | - | Chr7:95521365-95521384 | MsG0780041820.01.T01:three_prime_UTR | 55.0% | |
| AGAAGTGGCAATGGGGTGCA+AGG | - | Chr7:95521690-95521709 | MsG0780041820.01.T01:CDS | 55.0% | |
| ATCCAATCCAGCCACTGGGT+GGG | - | Chr7:95521366-95521385 | MsG0780041820.01.T01:three_prime_UTR | 55.0% | |
| GAAGTGGCAATGGGGTGCAA+GGG | - | Chr7:95521691-95521710 | MsG0780041820.01.T01:CDS | 55.0% | |
| GGGCATGGGTGGACCTTTAT+AGG | - | Chr7:95522064-95522083 | MsG0780041820.01.T01:CDS | 55.0% | |
| TGGTGAGCAGCTATGGTGGT+GGG | - | Chr7:95522015-95522034 | MsG0780041820.01.T01:CDS | 55.0% | |
| TTGGTGAGCAGCTATGGTGG+TGG | - | Chr7:95522014-95522033 | MsG0780041820.01.T01:CDS | 55.0% | |
| GTTGGAACTTGGGGCATGGG+TGG | - | Chr7:95522053-95522072 | MsG0780041820.01.T01:CDS | 60.0% | |
| TACCCACCCAGTGGCTGGAT+TGG | + | Chr7:95521371-95521390 | None:intergenic | 60.0% | |
| ! | GGTGAGCAGCTATGGTGGTG+GGG | - | Chr7:95522016-95522035 | MsG0780041820.01.T01:CDS | 60.0% |
| AGGGAGGGATACCCACCCAG+TGG | + | Chr7:95521380-95521399 | None:intergenic | 65.0% | |
| AGGGATACCCACCCAGTGGC+TGG | + | Chr7:95521376-95521395 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 95521304 | 95522350 | 95521304 | ID=MsG0780041820.01;Name=MsG0780041820.01 |
| Chr7 | mRNA | 95521304 | 95522350 | 95521304 | ID=MsG0780041820.01.T01;Parent=MsG0780041820.01;Name=MsG0780041820.01.T01;_AED=0.17;_eAED=0.17;_QI=80|1|1|1|0|0.5|2|83|243 |
| Chr7 | exon | 95521304 | 95522118 | 95521304 | ID=MsG0780041820.01.T01:exon:21030;Parent=MsG0780041820.01.T01 |
| Chr7 | exon | 95522271 | 95522350 | 95522271 | ID=MsG0780041820.01.T01:exon:21029;Parent=MsG0780041820.01.T01 |
| Chr7 | five_prime_UTR | 95522271 | 95522350 | 95522271 | ID=MsG0780041820.01.T01:five_prime_utr;Parent=MsG0780041820.01.T01 |
| Chr7 | CDS | 95521387 | 95522118 | 95521387 | ID=MsG0780041820.01.T01:cds;Parent=MsG0780041820.01.T01 |
| Chr7 | three_prime_UTR | 95521304 | 95521386 | 95521304 | ID=MsG0780041820.01.T01:three_prime_utr;Parent=MsG0780041820.01.T01 |
| Gene Sequence |
| Protein sequence |
