AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015307.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015307.01.T01 MTR_3g067705 93.939 165 10 0 1 165 1 165 9.57e-67 206
MsG0380015307.01.T01 MTR_3g064810 84.722 72 11 0 214 285 60 131 7.55e-37 130
MsG0380015307.01.T01 MTR_3g053650 89.231 65 7 0 214 278 166 230 9.97e-34 123
MsG0380015307.01.T01 MTR_3g053650 85.484 62 9 0 214 275 166 227 1.55e-29 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015307.01.T01 AT1G02410 85.000 60 9 0 214 273 150 209 3.33e-28 110
MsG0380015307.01.T01 AT1G02410 85.000 60 9 0 214 273 150 209 3.33e-28 110
MsG0380015307.01.T01 AT1G02410 85.000 60 9 0 214 273 150 209 3.33e-28 110

Find 91 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGTGAATTTCCTGGTTT+TGG 0.188927 3:-68248939 MsG0380015307.01.T01:CDS
CTTCTTTGGAGATGTTATTA+TGG 0.220499 3:+68249285 None:intergenic
TCAGTAGTCGGTACCTTCTT+AGG 0.246612 3:+68243413 None:intergenic
TGCGAAATTCCTCGGAATTC+AGG 0.257586 3:-68244970 MsG0380015307.01.T01:intron
GGAGGAGGAGGAAGAGGAGG+AGG 0.266847 3:+68249094 None:intergenic
ACTGATTTCCCTACAATAAT+AGG 0.267668 3:+68245058 None:intergenic
ACCGGATAGTCTAACTTCTT+TGG 0.283762 3:+68249271 None:intergenic
GGAGGCGGTGGAGGCGGAGG+TGG 0.286255 3:+68249169 None:intergenic
GGAGGTGGTGGTGGCGGTGG+TGG 0.293859 3:+68249130 None:intergenic
GGCGGTGGAGGCGGAGGTGG+AGG 0.294434 3:+68249172 None:intergenic
TAATATATCCAATATGGTTT+AGG 0.315770 3:+68248983 None:intergenic
CACTTGATTTCGGTGTATTC+CGG 0.320985 3:+68249235 None:intergenic
GGTGGAGGTGGTGGTGGCGG+TGG 0.321394 3:+68249127 None:intergenic
AAGTAATGCAGTGAATTTCC+TGG 0.351790 3:-68248945 MsG0380015307.01.T01:CDS
CAAGGTGGTGGAGGTGGTGG+TGG 0.352117 3:+68249121 None:intergenic
AGGAATTTCGCAAAGCTCTA+AGG 0.356646 3:+68244981 None:intergenic
CTTCTCCAACTCACAATTTG+AGG 0.360350 3:-68249372 MsG0380015307.01.T01:CDS
AAATACAAGGGCACTTTCTC+CGG 0.361329 3:+68243496 None:intergenic
GGGCACTTGGGAGGAGGAGG+AGG 0.365548 3:+68249079 None:intergenic
ACTGAATGTCCTATTATTGT+AGG 0.371650 3:-68245067 MsG0380015307.01.T01:CDS
CACTTGGGAGGAGGAGGAGG+AGG 0.372352 3:+68249082 None:intergenic
GGTGGTGGAGGTGGTGGTGG+CGG 0.373537 3:+68249124 None:intergenic
ACATGATCCACACTTGATTT+CGG 0.376575 3:+68249225 None:intergenic
GGCGGACAAGGTGGTGGAGG+TGG 0.377623 3:+68249115 None:intergenic
GGTGGTGGCGGTGGTGGTGT+TGG 0.383001 3:+68249136 None:intergenic
TATGTCGCAACACCGGTTAT+CGG 0.390222 3:+68243446 None:intergenic
GGACAAGGTGGTGGAGGTGG+TGG 0.395483 3:+68249118 None:intergenic
GAGTAATAATATATCCAATA+TGG 0.402251 3:+68248977 None:intergenic
GGAGGAGGAAGAGGAGGAGG+CGG 0.402509 3:+68249097 None:intergenic
GGAGGCGGACAAGGTGGTGG+AGG 0.415601 3:+68249112 None:intergenic
CAAGGAGGCGGTGGAGGCGG+AGG 0.420382 3:+68249166 None:intergenic
GGTTGACAAGGAGGCGGTGG+AGG 0.421853 3:+68249160 None:intergenic
GGAGGAGGCGGACAAGGTGG+TGG 0.427830 3:+68249109 None:intergenic
TGACAAGGAGGCGGTGGAGG+CGG 0.428589 3:+68249163 None:intergenic
GGAAGAGGAGGAGGCGGACA+AGG 0.437158 3:+68249103 None:intergenic
TCCAAAGAAGTTAGACTATC+CGG 0.437941 3:-68249272 MsG0380015307.01.T01:CDS
TTCGTATATGTGCCAGTGCC+AGG 0.440781 3:-68249010 MsG0380015307.01.T01:CDS
GGTGGCGGTGGTGGTGTTGG+TGG 0.443214 3:+68249139 None:intergenic
GAGGCGGAGGTGGAGGAGAT+TGG 0.445974 3:+68249179 None:intergenic
AAAAGTTCTACTCCGATAAC+CGG 0.458156 3:-68243458 MsG0380015307.01.T01:CDS
TGAGGGCACTTGGGAGGAGG+AGG 0.459814 3:+68249076 None:intergenic
TCCGGTGGCGGAACAATCAC+CGG 0.466042 3:+68249253 None:intergenic
TCACAATTTGAGGATTCAAA+AGG 0.473162 3:-68249362 MsG0380015307.01.T01:CDS
GAATACTCTATATTGCATAA+TGG 0.476101 3:-68243389 MsG0380015307.01.T01:CDS
AATACAAGGGCACTTTCTCC+GGG 0.484619 3:+68243497 None:intergenic
ACTGGCACATATACGAATCT+TGG 0.486748 3:+68249016 None:intergenic
TCCGGTGATTGTTCCGCCAC+CGG 0.488378 3:-68249254 MsG0380015307.01.T01:CDS
CTTGGTGGTGGCGGAGATGA+TGG 0.494958 3:+68249034 None:intergenic
TTCAATGCTGATATTGCGGA+TGG 0.496870 3:-68243755 MsG0380015307.01.T01:CDS
TTTCTGCGGTATAAAATACA+AGG 0.503842 3:+68243483 None:intergenic
TAGAGCTTTGCGAAATTCCT+CGG 0.507049 3:-68244978 MsG0380015307.01.T01:CDS
GAAATCAGTGTTGCTAATCA+TGG 0.507830 3:-68245044 MsG0380015307.01.T01:CDS
TGAATCCTCAAATTGTGAGT+TGG 0.525279 3:+68249367 None:intergenic
CAATATGGTTTAGGTTGACC+TGG 0.525698 3:+68248992 None:intergenic
GGTGGTTGACAAGGAGGCGG+TGG 0.530339 3:+68249157 None:intergenic
CAGGTCAACCTAAACCATAT+TGG 0.530467 3:-68248991 MsG0380015307.01.T01:CDS
ATTTCGGTGTATTCCGGTGG+CGG 0.531190 3:+68249241 None:intergenic
CTGAATGTCCTATTATTGTA+GGG 0.531773 3:-68245066 MsG0380015307.01.T01:CDS
GGTTTAGGTTGACCTGGCAC+TGG 0.534190 3:+68248998 None:intergenic
TATGGTTTCTTCAGTTGAAG+AGG 0.537455 3:+68249303 None:intergenic
GGTGGTGTTGGTGGTTGACA+AGG 0.541980 3:+68249148 None:intergenic
TATACGAATCTTGGTGGTGG+CGG 0.547788 3:+68249025 None:intergenic
GGCACATATACGAATCTTGG+TGG 0.548817 3:+68249019 None:intergenic
ATATAATGTCACTCCTAAGA+AGG 0.551230 3:-68243426 MsG0380015307.01.T01:CDS
TGGCATGGTCTAGTATAAGT+AGG 0.563551 3:-68245024 MsG0380015307.01.T01:CDS
TTTCGCAAAGCTCTAAGGTA+TGG 0.565621 3:+68244986 None:intergenic
TACCAGGTTAGGGTGAAGCC+CGG 0.567918 3:-68243515 MsG0380015307.01.T01:intron
CTCCTCCTAAAGCCAAAACC+AGG 0.576971 3:+68248927 None:intergenic
GGTGTTGGTGGTTGACAAGG+AGG 0.577220 3:+68249151 None:intergenic
GGCGGAGATGATGGTAGCAA+GGG 0.578113 3:+68249043 None:intergenic
TCACCACATGTTTGTCCACA+AGG 0.582995 3:+68249202 None:intergenic
AGAGGAGGAGGCGGACAAGG+TGG 0.587126 3:+68249106 None:intergenic
ATAGAGTATTCTTCAGTAGT+CGG 0.587526 3:+68243401 None:intergenic
TGTGTAGAAACAAACTTCCA+TGG 0.593645 3:+68243728 None:intergenic
ACATATACGAATCTTGGTGG+TGG 0.594151 3:+68249022 None:intergenic
GTTGGTGGTTGACAAGGAGG+CGG 0.605298 3:+68249154 None:intergenic
TGGCGGAGATGATGGTAGCA+AGG 0.610806 3:+68249042 None:intergenic
GTTTGTTTCTACACAGAGAG+AGG 0.613068 3:-68243720 MsG0380015307.01.T01:intron
GACATTATATGTCGCAACAC+CGG 0.613799 3:+68243439 None:intergenic
AGGAGGACTCTCAATTGCAA+CGG 0.621978 3:-68248909 MsG0380015307.01.T01:intron
CAGTGTTGCTAATCATGGCA+TGG 0.624611 3:-68245039 MsG0380015307.01.T01:CDS
ACATTTCAATGCTGATATTG+CGG 0.640753 3:-68243759 MsG0380015307.01.T01:CDS
TTGATTTCGGTGTATTCCGG+TGG 0.641513 3:+68249238 None:intergenic
TTCTGCGGTATAAAATACAA+GGG 0.649917 3:+68243484 None:intergenic
ATATTGCGGATGGGATGCCA+TGG 0.658129 3:-68243745 MsG0380015307.01.T01:CDS
ATCAAATTACCTGAATTCCG+AGG 0.674042 3:+68244961 None:intergenic
GAATACACCGAAATCAAGTG+TGG 0.675698 3:-68249232 MsG0380015307.01.T01:CDS
AAGTGTGGATCATGTCCTTG+TGG 0.677197 3:-68249217 MsG0380015307.01.T01:CDS
TCAATGCTGATATTGCGGAT+GGG 0.681406 3:-68243754 MsG0380015307.01.T01:CDS
GCGGAGATGATGGTAGCAAG+GGG 0.710501 3:+68249044 None:intergenic
TGTCCTTGTGGACAAACATG+TGG 0.726872 3:-68249205 MsG0380015307.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAATCTTTGAT+GGG + Chr3:68245680-68245699 None:intergenic 10.0%
!! TTAAAAAAAAAAATCTTTGA+TGG + Chr3:68245681-68245700 None:intergenic 10.0%
!!! AAAGCTAAAAAAAATATTTT+TGG + Chr3:68248723-68248742 None:intergenic 10.0%
!!! AAATATAAAAAATTTGGTTT+TGG + Chr3:68247164-68247183 None:intergenic 10.0%
!!! CAAAATTATAAGAAATTTTA+TGG - Chr3:68246601-68246620 MsG0380015307.01.T01:intron 10.0%
!!! CATAAAATTTCTTATAATTT+TGG + Chr3:68246603-68246622 None:intergenic 10.0%
!!! TTTTTATTAATTTTAGCATT+AGG + Chr3:68247530-68247549 None:intergenic 10.0%
!! AAAAAATAATGGCTTAAATA+TGG - Chr3:68246872-68246891 MsG0380015307.01.T01:intron 15.0%
!! AAATCATTTCATATTGAAAT+TGG - Chr3:68247019-68247038 MsG0380015307.01.T01:intron 15.0%
!! ATAAGATGGAATATAAATAA+AGG - Chr3:68244571-68244590 MsG0380015307.01.T01:intron 15.0%
!! ATAATTTCTCTTATAAAAGA+CGG - Chr3:68248083-68248102 MsG0380015307.01.T01:intron 15.0%
!! CAAATATTCTACATATTATA+AGG - Chr3:68247086-68247105 MsG0380015307.01.T01:intron 15.0%
!! CAATATATGTAAAGTTTATA+CGG + Chr3:68247574-68247593 None:intergenic 15.0%
!! CCTTTCAAAAAAAAAATATT+CGG - Chr3:68245490-68245509 MsG0380015307.01.T01:intron 15.0%
!! CTTCAAAAAAAAAAATTGTA+AGG + Chr3:68245312-68245331 None:intergenic 15.0%
!! TAAAATAATACAAAATCTTG+TGG - Chr3:68245019-68245038 MsG0380015307.01.T01:CDS 15.0%
!! TAGTAAAAAAATTGTTACTA+AGG + Chr3:68244060-68244079 None:intergenic 15.0%
!! TAGTATGCTATTATATTATT+CGG + Chr3:68247290-68247309 None:intergenic 15.0%
!! TATACAAGAATGTAAAATAA+TGG - Chr3:68245996-68246015 MsG0380015307.01.T01:intron 15.0%
!! TATTCAATAAACGTAAATTA+GGG - Chr3:68248887-68248906 MsG0380015307.01.T01:intron 15.0%
!! TTATTCAATAAACGTAAATT+AGG - Chr3:68248886-68248905 MsG0380015307.01.T01:intron 15.0%
!!! AAAAATCTAACAATTTTGTT+TGG - Chr3:68245531-68245550 MsG0380015307.01.T01:intron 15.0%
!!! AAAATCTAACAATTTTGTTT+GGG - Chr3:68245532-68245551 MsG0380015307.01.T01:intron 15.0%
!!! AAATATAGAATAATTGGTTT+TGG - Chr3:68246968-68246987 MsG0380015307.01.T01:intron 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG - Chr3:68247195-68247214 MsG0380015307.01.T01:intron 15.0%
!!! AACCAAAAAAATATTTTTAC+AGG + Chr3:68247214-68247195 None:intergenic 15.0%
!!! ACAAGATTTTGTATTATTTT+AGG + Chr3:68245020-68245039 None:intergenic 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG - Chr3:68247196-68247215 MsG0380015307.01.T01:intron 15.0%
!!! ACCAAAAAAATATTTTTACA+GGG + Chr3:68247215-68247196 None:intergenic 15.0%
!!! CAGATATATTTATTTTGTAA+AGG + Chr3:68244139-68244158 None:intergenic 15.0%
!!! GTTTGTTTTTTAAAAAAGTT+CGG - Chr3:68247315-68247334 MsG0380015307.01.T01:intron 15.0%
!!! TATATTTGTAATTTGTATTG+AGG - Chr3:68247894-68247913 MsG0380015307.01.T01:intron 15.0%
!!! TTATATTTTTCTTTTGATGT+TGG - Chr3:68246397-68246416 MsG0380015307.01.T01:intron 15.0%
!!! TTTGTTTTTTAAAAAAGTTC+GGG - Chr3:68247316-68247335 MsG0380015307.01.T01:intron 15.0%
!!! TTTTTATTTCTAAAAGTCTA+TGG - Chr3:68247596-68247615 MsG0380015307.01.T01:intron 15.0%
!! AAAAATATAAGAACGTAGTA+TGG + Chr3:68246387-68246406 None:intergenic 20.0%
!! AAACAATCGTAAACATAATT+CGG - Chr3:68245460-68245479 MsG0380015307.01.T01:intron 20.0%
!! AAAGAGAATATATCATATGA+CGG + Chr3:68246186-68246205 None:intergenic 20.0%
!! AATAAACAATTTCCTCATAT+AGG + Chr3:68248334-68248353 None:intergenic 20.0%
!! ACTACCAGATTAATTATTTA+GGG - Chr3:68244415-68244434 MsG0380015307.01.T01:intron 20.0%
!! AGAATAGAGTAATGAAATAA+AGG + Chr3:68246325-68246344 None:intergenic 20.0%
!! AGGACTAAAATGAATATTAT+AGG + Chr3:68247047-68247066 None:intergenic 20.0%
!! ATAACGTTCACAAAAAATAA+TGG - Chr3:68246861-68246880 MsG0380015307.01.T01:intron 20.0%
!! ATGAAAGATAAGATAATTGA+AGG + Chr3:68246256-68246275 None:intergenic 20.0%
!! CGAATTTATAAATAATGTAG+TGG + Chr3:68245438-68245457 None:intergenic 20.0%
!! CTGAATAAAAAACTATACAA+AGG - Chr3:68248686-68248705 MsG0380015307.01.T01:intron 20.0%
!! CTTTGTCAACAAAAAAAAAA+TGG - Chr3:68245965-68245984 MsG0380015307.01.T01:intron 20.0%
!! GAAAGTAGAATAAACAAATT+TGG - Chr3:68245211-68245230 MsG0380015307.01.T01:intron 20.0%
!! GAGTAATAATATATCCAATA+TGG + Chr3:68243778-68243797 None:intergenic 20.0%
!! GGACTAAAATGAATATTATA+GGG + Chr3:68247046-68247065 None:intergenic 20.0%
!! TAATATATCCAATATGGTTT+AGG + Chr3:68243772-68243791 None:intergenic 20.0%
!! TTATAGTCAATATTGTTCTA+AGG - Chr3:68247860-68247879 MsG0380015307.01.T01:intron 20.0%
!!! AAACGATTCATAATACATTT+TGG - Chr3:68247547-68247566 MsG0380015307.01.T01:intron 20.0%
!!! AAATTGATTCATATTGGATT+TGG + Chr3:68247113-68247132 None:intergenic 20.0%
!!! ACCAAATTTTTTATATTTGC+AGG - Chr3:68247166-68247185 MsG0380015307.01.T01:intron 20.0%
!!! ACTGATTTATATTTTCAACT+TGG + Chr3:68246499-68246518 None:intergenic 20.0%
!!! ATAATTATGTTGTTGATTCA+GGG - Chr3:68247997-68248016 MsG0380015307.01.T01:intron 20.0%
!!! CAATATGAAATGATTTTACA+AGG + Chr3:68247015-68247034 None:intergenic 20.0%
!!! CAATATGAATCAATTTTACA+AGG - Chr3:68247117-68247136 MsG0380015307.01.T01:intron 20.0%
!!! CCAAATTTTTTATATTTGCA+GGG - Chr3:68247167-68247186 MsG0380015307.01.T01:intron 20.0%
!!! CCGAATATTTTTTTTTTGAA+AGG + Chr3:68245493-68245512 None:intergenic 20.0%
!!! CTTGTAAAATTGATTCATAT+TGG + Chr3:68247119-68247138 None:intergenic 20.0%
!!! GAAATTTTATGGATATAAGA+AGG - Chr3:68246612-68246631 MsG0380015307.01.T01:intron 20.0%
!!! GCTAAAAAAAATATTTTTGG+AGG + Chr3:68248720-68248739 None:intergenic 20.0%
!!! TATAATTATGTTGTTGATTC+AGG - Chr3:68247996-68248015 MsG0380015307.01.T01:intron 20.0%
!!! TATTCTTTCTCTCATTTTTT+TGG - Chr3:68246339-68246358 MsG0380015307.01.T01:intron 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG - Chr3:68246932-68246951 MsG0380015307.01.T01:intron 20.0%
!!! TCCCTGTAAAAATATTTTTT+TGG + Chr3:68246951-68246932 None:intergenic 20.0%
!!! TTGTTTTTTAAAAAAGTTCG+GGG - Chr3:68247317-68247336 MsG0380015307.01.T01:intron 20.0%
! AACAACTAAAATACAAACGT+AGG - Chr3:68246708-68246727 MsG0380015307.01.T01:intron 25.0%
! AAGAGAATATATCATATGAC+GGG + Chr3:68246185-68246204 None:intergenic 25.0%
! ACCAATTATTCTATATTTGC+AGG + Chr3:68246966-68246985 None:intergenic 25.0%
! ACTACATCAAAACAACAAAT+TGG - Chr3:68245766-68245785 MsG0380015307.01.T01:intron 25.0%
! AGGATTAAAACAAAATACGA+AGG + Chr3:68246995-68247014 None:intergenic 25.0%
! ATATTGTCTTTGACGTTAAT+CGG + Chr3:68244394-68244413 None:intergenic 25.0%
! CCAATTATTCTATATTTGCA+GGG + Chr3:68246965-68246984 None:intergenic 25.0%
! CCCTGCAAATATAAAAAATT+TGG + Chr3:68247170-68247189 None:intergenic 25.0%
! CTAATTGAATCATTGCTTAA+TGG + Chr3:68248848-68248867 None:intergenic 25.0%
! CTACCAGATTAATTATTTAG+GGG - Chr3:68244416-68244435 MsG0380015307.01.T01:intron 25.0%
! GAATACTCTATATTGCATAA+TGG - Chr3:68249363-68249382 MsG0380015307.01.T01:CDS 25.0%
! GAATTATGTTTACGATTGTT+TGG + Chr3:68245461-68245480 None:intergenic 25.0%
! GACTACCAGATTAATTATTT+AGG - Chr3:68244414-68244433 MsG0380015307.01.T01:intron 25.0%
! GATAAGATAATTGAAGGTTT+AGG + Chr3:68246250-68246269 None:intergenic 25.0%
! GTAAAATATCCGGTAAATTT+GGG + Chr3:68248312-68248331 None:intergenic 25.0%
! GTAATTAGTGAGATAAAACT+TGG + Chr3:68246087-68246106 None:intergenic 25.0%
! GTTTGTGCAATAAATTATCA+TGG + Chr3:68249161-68249180 None:intergenic 25.0%
! TAAAATATCCGGTAAATTTG+GGG + Chr3:68248311-68248330 None:intergenic 25.0%
! TAAAGTATAAGCATAGTACA+CGG - Chr3:68244211-68244230 MsG0380015307.01.T01:intron 25.0%
! TAATGGCTTAAATATGGAAA+TGG - Chr3:68246878-68246897 MsG0380015307.01.T01:intron 25.0%
! TACCAGATTAATTATTTAGG+GGG - Chr3:68244417-68244436 MsG0380015307.01.T01:intron 25.0%
! TAGATGACTAGAAGTTAAAA+TGG - Chr3:68245255-68245274 MsG0380015307.01.T01:intron 25.0%
! TGTACTATGCTTATACTTTA+TGG + Chr3:68244211-68244230 None:intergenic 25.0%
! TTATCTCACTAATTACTTCA+TGG - Chr3:68246091-68246110 MsG0380015307.01.T01:intron 25.0%
! TTATGATGTAATCAAGTACT+AGG + Chr3:68248067-68248086 None:intergenic 25.0%
! TTATTCCATTCAACCATTTA+GGG + Chr3:68244666-68244685 None:intergenic 25.0%
! TTGCTAATTAAAACCCTAAA+TGG - Chr3:68244650-68244669 MsG0380015307.01.T01:intron 25.0%
!! ACAATCAAGTCAATCATTTT+TGG + Chr3:68245352-68245371 None:intergenic 25.0%
!! TGTTACTCTTTTTCTTTAGT+AGG - Chr3:68247837-68247856 MsG0380015307.01.T01:intron 25.0%
!! TTAATTTTTGTAACAGCACA+AGG + Chr3:68245401-68245420 None:intergenic 25.0%
!!! AGGATTTGTTTTGTTTTTTC+AGG - Chr3:68248586-68248605 MsG0380015307.01.T01:intron 25.0%
!!! CAAGTTTAGCTTTATTTTCA+TGG + Chr3:68243885-68243904 None:intergenic 25.0%
!!! CAATCGAGTTATTTCTATAA+TGG - Chr3:68244909-68244928 MsG0380015307.01.T01:intron 25.0%
!!! TAATTATGTTGTTGATTCAG+GGG - Chr3:68247998-68248017 MsG0380015307.01.T01:intron 25.0%
!!! TAGCTTTTTTCTTGTTGTAA+CGG - Chr3:68248927-68248946 MsG0380015307.01.T01:CDS 25.0%
!!! TCGGTCTCAATATTTATTTT+TGG + Chr3:68247271-68247290 None:intergenic 25.0%
AAATGTAAAGTCCTATCCTA+TGG + Chr3:68248811-68248830 None:intergenic 30.0%
AACTAAAATACAAACGTAGG+AGG - Chr3:68246711-68246730 MsG0380015307.01.T01:intron 30.0%
AAGAAACCAAAAGTAAGTGA+TGG - Chr3:68244720-68244739 MsG0380015307.01.T01:intron 30.0%
AAGATGCTTATTTACTTGAC+AGG - Chr3:68248245-68248264 MsG0380015307.01.T01:intron 30.0%
AATAAACGTAAATTAGGGTG+CGG - Chr3:68248892-68248911 MsG0380015307.01.T01:intron 30.0%
AATAAACTTTCCTCTACGTT+AGG + Chr3:68244005-68244024 None:intergenic 30.0%
ACATTTCAATGCTGATATTG+CGG - Chr3:68248993-68249012 MsG0380015307.01.T01:CDS 30.0%
ACCAGATTAATTATTTAGGG+GGG - Chr3:68244418-68244437 MsG0380015307.01.T01:intron 30.0%
ACTGAATGTCCTATTATTGT+AGG - Chr3:68247685-68247704 MsG0380015307.01.T01:intron 30.0%
AGACATACATAATAAGTGCA+TGG + Chr3:68243980-68243999 None:intergenic 30.0%
AGACGCATGAGAAATATATA+AGG - Chr3:68245598-68245617 MsG0380015307.01.T01:intron 30.0%
AGGACTAAAACAAAATACCA+AGG - Chr3:68247137-68247156 MsG0380015307.01.T01:intron 30.0%
ATAGGATAGGACTTTACATT+TGG - Chr3:68248810-68248829 MsG0380015307.01.T01:intron 30.0%
ATATAATGTCACTCCTAAGA+AGG - Chr3:68249326-68249345 MsG0380015307.01.T01:CDS 30.0%
ATATTCCGATTATCAACCAT+AGG - Chr3:68248792-68248811 MsG0380015307.01.T01:intron 30.0%
ATCATGAAAGACATAGTTGT+AGG - Chr3:68244801-68244820 MsG0380015307.01.T01:intron 30.0%
ATGCGAAATTAGTGAAGAAA+TGG - Chr3:68244305-68244324 MsG0380015307.01.T01:intron 30.0%
CAAAACATCAGATATTTGCA+GGG + Chr3:68246905-68246924 None:intergenic 30.0%
CAAAATGTCAGATATTTGCA+GGG - Chr3:68247227-68247246 MsG0380015307.01.T01:intron 30.0%
CAATTAGATATATGCTGACA+AGG - Chr3:68248861-68248880 MsG0380015307.01.T01:intron 30.0%
CCCTGCAAATATAGAATAAT+TGG - Chr3:68246962-68246981 MsG0380015307.01.T01:intron 30.0%
CCTCATATAGGTAAAATATC+CGG + Chr3:68248322-68248341 None:intergenic 30.0%
CTGAATGTCCTATTATTGTA+GGG - Chr3:68247686-68247705 MsG0380015307.01.T01:intron 30.0%
CTTATTCCATTCAACCATTT+AGG + Chr3:68244667-68244686 None:intergenic 30.0%
GATAATCGGAATATGAAAGA+CGG + Chr3:68248786-68248805 None:intergenic 30.0%
GGATTAATTAAGCTATAACC+TGG + Chr3:68248046-68248065 None:intergenic 30.0%
GGTAAAATATCCGGTAAATT+TGG + Chr3:68248313-68248332 None:intergenic 30.0%
TAAAACCCTAAATGGTTGAA+TGG - Chr3:68244658-68244677 MsG0380015307.01.T01:intron 30.0%
TAAGAAGGTTAAGTATCTTG+AGG - Chr3:68246627-68246646 MsG0380015307.01.T01:intron 30.0%
TCACAATTTGAGGATTCAAA+AGG - Chr3:68243390-68243409 MsG0380015307.01.T01:CDS 30.0%
TGAAGCAAGGCAATATATAT+TGG + Chr3:68244971-68244990 None:intergenic 30.0%
TGCTTACACATACGATAATT+TGG + Chr3:68245072-68245091 None:intergenic 30.0%
TGGTAAAAAGATGACATCTA+AGG + Chr3:68248554-68248573 None:intergenic 30.0%
TTCTAAATGAGATTGTAGTG+AGG - Chr3:68246808-68246827 MsG0380015307.01.T01:intron 30.0%
TTCTGCGGTATAAAATACAA+GGG + Chr3:68249271-68249290 None:intergenic 30.0%
TTGTTTCATGTTTGCACAAA+AGG - Chr3:68245886-68245905 MsG0380015307.01.T01:intron 30.0%
TTTCTGCGGTATAAAATACA+AGG + Chr3:68249272-68249291 None:intergenic 30.0%
! AAAGAGTGTATAGAAATGCT+TGG + Chr3:68247627-68247646 None:intergenic 30.0%
! AACTTTTACTTTACTAGCTG+AGG - Chr3:68247924-68247943 MsG0380015307.01.T01:intron 30.0%
! AATTGTAAGGTACTCTCTTA+AGG + Chr3:68245299-68245318 None:intergenic 30.0%
! ACTGATTTCCCTACAATAAT+AGG + Chr3:68247697-68247716 None:intergenic 30.0%
! ATAGAGTATTCTTCAGTAGT+CGG + Chr3:68249354-68249373 None:intergenic 30.0%
! CTTCTTTGGAGATGTTATTA+TGG + Chr3:68243470-68243489 None:intergenic 30.0%
! CTTTGAAAATACTCTTTGCT+CGG + Chr3:68245568-68245587 None:intergenic 30.0%
! GTTTTCACAACACATAGAAT+TGG - Chr3:68244842-68244861 MsG0380015307.01.T01:intron 30.0%
! TAGGAGATTCACTAATCTTT+TGG + Chr3:68245001-68245020 None:intergenic 30.0%
! TCTTAATAAGTTGAGTATCC+TGG + Chr3:68244946-68244965 None:intergenic 30.0%
! TGATTGCTACAAACATTTTG+TGG + Chr3:68244785-68244804 None:intergenic 30.0%
! TTTTATACATCATATGCACG+TGG + Chr3:68244333-68244352 None:intergenic 30.0%
!! AAAAAAATCTTTGATGGGCT+TGG + Chr3:68245675-68245694 None:intergenic 30.0%
!! TCGAGTTATTTCTATAATGG+TGG - Chr3:68244912-68244931 MsG0380015307.01.T01:intron 30.0%
!!! AAAAATTTGGTTTTGGTCCT+TGG + Chr3:68247157-68247176 None:intergenic 30.0%
!!! AGCTTTTTTCTTGTTGTAAC+GGG - Chr3:68248928-68248947 MsG0380015307.01.T01:CDS 30.0%
!!! AGTAGAACTTTTGTTTTCTG+CGG + Chr3:68249286-68249305 None:intergenic 30.0%
!!! CATTTTAGTCCTTGTTTTGA+GGG - Chr3:68247055-68247074 MsG0380015307.01.T01:intron 30.0%
!!! TCATTTTAGTCCTTGTTTTG+AGG - Chr3:68247054-68247073 MsG0380015307.01.T01:intron 30.0%
!!! TTTCTCTCATTTTTTTGGAG+TGG - Chr3:68246344-68246363 MsG0380015307.01.T01:intron 30.0%
!!! TTTTCAGGTTGATGAATGTA+TGG - Chr3:68248601-68248620 MsG0380015307.01.T01:intron 30.0%
AAAAGTTCTACTCCGATAAC+CGG - Chr3:68249294-68249313 MsG0380015307.01.T01:CDS 35.0%
AAAGGTAGCTCATCAAGTAT+CGG + Chr3:68248954-68248973 None:intergenic 35.0%
AACAAATTTCTCACTGTTCC+CGG + Chr3:68245832-68245851 None:intergenic 35.0%
AAGTAATGCAGTGAATTTCC+TGG - Chr3:68243807-68243826 MsG0380015307.01.T01:intron 35.0%
AAGTCATTATTACCACCTGT+TGG + Chr3:68247416-68247435 None:intergenic 35.0%
AATTGAAGGTTTAGGCTGTT+TGG + Chr3:68246242-68246261 None:intergenic 35.0%
AATTTCGACCATGAGTTTGA+GGG + Chr3:68244621-68244640 None:intergenic 35.0%
ACATGATCCACACTTGATTT+CGG + Chr3:68243530-68243549 None:intergenic 35.0%
ACTTTACATTTGGCATGTAC+GGG - Chr3:68248820-68248839 MsG0380015307.01.T01:intron 35.0%
AGTGCCTTGAAGATAATGTA+GGG - Chr3:68245128-68245147 MsG0380015307.01.T01:intron 35.0%
ATCAAATTACCTGAATTCCG+AGG + Chr3:68247794-68247813 None:intergenic 35.0%
ATGGAAACACAGCATATTTG+CGG + Chr3:68249088-68249107 None:intergenic 35.0%
ATTGAAGGTTTAGGCTGTTT+GGG + Chr3:68246241-68246260 None:intergenic 35.0%
CATCAAAACAACAAATTGGC+CGG - Chr3:68245770-68245789 MsG0380015307.01.T01:intron 35.0%
CATTATTCATTTGCTCTACC+AGG - Chr3:68249221-68249240 MsG0380015307.01.T01:CDS 35.0%
CCAAAACATCAGATATTTGC+AGG + Chr3:68246906-68246925 None:intergenic 35.0%
CCAAAATGTCAGATATTTGC+AGG - Chr3:68247226-68247245 MsG0380015307.01.T01:intron 35.0%
CCACAATTTCCCTGAAAAAA+AGG + Chr3:68248972-68248991 None:intergenic 35.0%
CCAGATTAATTATTTAGGGG+GGG - Chr3:68244419-68244438 MsG0380015307.01.T01:intron 35.0%
CTCTTTACTACAAAATCCAC+AGG - Chr3:68246200-68246219 MsG0380015307.01.T01:intron 35.0%
GAAACATTTAAACCAACAGG+TGG - Chr3:68247401-68247420 MsG0380015307.01.T01:intron 35.0%
GACTTTACATTTGGCATGTA+CGG - Chr3:68248819-68248838 MsG0380015307.01.T01:intron 35.0%
GAGTGTACAAACAAAATCGT+AGG - Chr3:68246771-68246790 MsG0380015307.01.T01:intron 35.0%
GCTGAAACATTTAAACCAAC+AGG - Chr3:68247398-68247417 MsG0380015307.01.T01:intron 35.0%
GGTAAAAGAGAAGAAAACGA+AGG - Chr3:68245185-68245204 MsG0380015307.01.T01:intron 35.0%
GGTAAATATGATGTCTAGTG+AGG - Chr3:68244749-68244768 MsG0380015307.01.T01:intron 35.0%
GGTGTAAAAATAACACCTTG+AGG + Chr3:68248533-68248552 None:intergenic 35.0%
GTAACGTTAAACAATCATCG+AGG + Chr3:68245926-68245945 None:intergenic 35.0%
GTCCTTCAGGAATAATAGAT+TGG + Chr3:68248024-68248043 None:intergenic 35.0%
GTGAAACAAAAGCTGAAGTA+CGG + Chr3:68248148-68248167 None:intergenic 35.0%
TAAGACTTCTACTTCCTTAC+TGG + Chr3:68245101-68245120 None:intergenic 35.0%
TAATTTCGACCATGAGTTTG+AGG + Chr3:68244622-68244641 None:intergenic 35.0%
TACACATACGATAATTTGGC+TGG + Chr3:68245068-68245087 None:intergenic 35.0%
TATGGTTTCTTCAGTTGAAG+AGG + Chr3:68243452-68243471 None:intergenic 35.0%
TCCAAAGAAGTTAGACTATC+CGG - Chr3:68243480-68243499 MsG0380015307.01.T01:CDS 35.0%
TGAATCCTCAAATTGTGAGT+TGG + Chr3:68243388-68243407 None:intergenic 35.0%
TGACATGTCATGACAACTAA+TGG - Chr3:68244357-68244376 MsG0380015307.01.T01:intron 35.0%
TGAGAAACAAATTGTGACTG+AGG - Chr3:68245164-68245183 MsG0380015307.01.T01:intron 35.0%
TGTAAGCACATATTCCAGTA+AGG - Chr3:68245084-68245103 MsG0380015307.01.T01:CDS 35.0%
TGTGTAGAAACAAACTTCCA+TGG + Chr3:68249027-68249046 None:intergenic 35.0%
TGTTCGAGAATCTCATAAGA+TGG - Chr3:68244557-68244576 MsG0380015307.01.T01:intron 35.0%
TTACTCTTCATGTAAGAGAG+TGG + Chr3:68244483-68244502 None:intergenic 35.0%
TTGTTTCACAGAATGTTGGA+AGG - Chr3:68248159-68248178 MsG0380015307.01.T01:intron 35.0%
! AGATGTCATCTTTTTACCAG+TGG - Chr3:68248555-68248574 MsG0380015307.01.T01:intron 35.0%
! ATAAACTCTTTTCACGAGCT+TGG - Chr3:68244171-68244190 MsG0380015307.01.T01:intron 35.0%
! CATTTTCTCGTCAGATTCAT+TGG - Chr3:68248404-68248423 MsG0380015307.01.T01:intron 35.0%
! CCGGATATTTTACCTATATG+AGG - Chr3:68248319-68248338 MsG0380015307.01.T01:intron 35.0%
! CCTGCAAATATCTGACATTT+TGG + Chr3:68247229-68247248 None:intergenic 35.0%
! CCTGCAAATATCTGATGTTT+TGG - Chr3:68246903-68246922 MsG0380015307.01.T01:intron 35.0%
! CTTTTGTGATTTTTGCTCTG+TGG + Chr3:68248228-68248247 None:intergenic 35.0%
! GAAATCAGTGTTGCTAATCA+TGG - Chr3:68247708-68247727 MsG0380015307.01.T01:intron 35.0%
! GAACAGTGAGAAATTTGTTC+AGG - Chr3:68245833-68245852 MsG0380015307.01.T01:intron 35.0%
! TTTTACTTTACTAGCTGAGG+AGG - Chr3:68247927-68247946 MsG0380015307.01.T01:intron 35.0%
!! CCTATCCTATGGTTGATAAT+CGG + Chr3:68248800-68248819 None:intergenic 35.0%
!! GATTTTAGTCCCTCAAAACA+AGG + Chr3:68247067-68247086 None:intergenic 35.0%
!! GCTTTTGTTTCACAGAATGT+TGG - Chr3:68248155-68248174 MsG0380015307.01.T01:intron 35.0%
!! TTTTACCAGTGGTTTGTGAT+AGG - Chr3:68248566-68248585 MsG0380015307.01.T01:intron 35.0%
!! TTTTGGAAGAGTATGAAGCA+AGG + Chr3:68244984-68245003 None:intergenic 35.0%
!!! AATTTCCTGGTTTTGGCTTT+AGG - Chr3:68243820-68243839 MsG0380015307.01.T01:intron 35.0%
!!! ATGTGTGACTTTGTTTTCAG+TGG - Chr3:68248376-68248395 MsG0380015307.01.T01:intron 35.0%
!!! CCTTTTTTTCAGGGAAATTG+TGG - Chr3:68248969-68248988 MsG0380015307.01.T01:CDS 35.0%
!!! CGAGCAAAGAGTATTTTCAA+AGG - Chr3:68245566-68245585 MsG0380015307.01.T01:intron 35.0%
!!! GATGAGCTACCTTTTTTTCA+GGG - Chr3:68248960-68248979 MsG0380015307.01.T01:CDS 35.0%
!!! TGATGAGCTACCTTTTTTTC+AGG - Chr3:68248959-68248978 MsG0380015307.01.T01:CDS 35.0%
!!! TTACAATTTTGAGGGCACTT+GGG + Chr3:68243688-68243707 None:intergenic 35.0%
AACACAGCATATTTGCGGTA+AGG + Chr3:68249083-68249102 None:intergenic 40.0%
AACATTACCCCTCAAACTCA+TGG - Chr3:68244610-68244629 MsG0380015307.01.T01:intron 40.0%
ACATATACGAATCTTGGTGG+TGG + Chr3:68243733-68243752 None:intergenic 40.0%
ACCGGATAGTCTAACTTCTT+TGG + Chr3:68243484-68243503 None:intergenic 40.0%
ACTGGCACATATACGAATCT+TGG + Chr3:68243739-68243758 None:intergenic 40.0%
AGGAATTTCGCAAAGCTCTA+AGG + Chr3:68247774-68247793 None:intergenic 40.0%
ATGAAAAGAGCAGCAGAACA+GGG + Chr3:68246302-68246321 None:intergenic 40.0%
ATTTCGACCATGAGTTTGAG+GGG + Chr3:68244620-68244639 None:intergenic 40.0%
CAAATCCTATCACAAACCAC+TGG + Chr3:68248574-68248593 None:intergenic 40.0%
CAGGTCAACCTAAACCATAT+TGG - Chr3:68243761-68243780 MsG0380015307.01.T01:CDS 40.0%
CCCCCCCTAAATAATTAATC+TGG + Chr3:68244422-68244441 None:intergenic 40.0%
CCGATTATCAACCATAGGAT+AGG - Chr3:68248797-68248816 MsG0380015307.01.T01:intron 40.0%
CCGGAAAACAAAAAGATTGC+CGG - Chr3:68245789-68245808 MsG0380015307.01.T01:intron 40.0%
CCTTGAAGATAATGTAGGGT+GGG - Chr3:68245132-68245151 MsG0380015307.01.T01:intron 40.0%
CTGAAGTACGGTAACATTGA+TGG + Chr3:68248136-68248155 None:intergenic 40.0%
CTTCTCCAACTCACAATTTG+AGG - Chr3:68243380-68243399 MsG0380015307.01.T01:CDS 40.0%
CTTTACATTTGGCATGTACG+GGG - Chr3:68248821-68248840 MsG0380015307.01.T01:intron 40.0%
GAAATCAAACAGTCACCTCA+AGG - Chr3:68248515-68248534 MsG0380015307.01.T01:intron 40.0%
GAATACACCGAAATCAAGTG+TGG - Chr3:68243520-68243539 MsG0380015307.01.T01:intron 40.0%
GACATTATATGTCGCAACAC+CGG + Chr3:68249316-68249335 None:intergenic 40.0%
GAGTGCCTTGAAGATAATGT+AGG - Chr3:68245127-68245146 MsG0380015307.01.T01:intron 40.0%
GCTTATTTACTTGACAGGCT+TGG - Chr3:68248250-68248269 MsG0380015307.01.T01:intron 40.0%
GCTTGGTACTACTAGTTACT+AGG + Chr3:68245658-68245677 None:intergenic 40.0%
GGCCAATCTATTATTCCTGA+AGG - Chr3:68248019-68248038 MsG0380015307.01.T01:intron 40.0%
GTAGTCAGGAATTCAGCTTA+GGG - Chr3:68246471-68246490 MsG0380015307.01.T01:intron 40.0%
GTATGTCTTTCCTAACGTAG+AGG - Chr3:68243992-68244011 MsG0380015307.01.T01:intron 40.0%
TAGAGCTTTGCGAAATTCCT+CGG - Chr3:68247774-68247793 MsG0380015307.01.T01:intron 40.0%
TAGTCAGGAATTCAGCTTAG+GGG - Chr3:68246472-68246491 MsG0380015307.01.T01:intron 40.0%
TATTCTTCCCGTGACTGTTT+CGG - Chr3:68245371-68245390 MsG0380015307.01.T01:intron 40.0%
TCAATGCTGATATTGCGGAT+GGG - Chr3:68248998-68249017 MsG0380015307.01.T01:CDS 40.0%
TCATTTGCTCTACCAGGTTA+GGG - Chr3:68249227-68249246 MsG0380015307.01.T01:CDS 40.0%
TCGGAATATGAAAGACGGTT+TGG + Chr3:68248781-68248800 None:intergenic 40.0%
TCTATTATTCCTGAAGGACC+AGG - Chr3:68248025-68248044 MsG0380015307.01.T01:intron 40.0%
TGGCATGGTCTAGTATAAGT+AGG - Chr3:68247728-68247747 MsG0380015307.01.T01:intron 40.0%
TTCAATGCTGATATTGCGGA+TGG - Chr3:68248997-68249016 MsG0380015307.01.T01:CDS 40.0%
TTCATTTGCTCTACCAGGTT+AGG - Chr3:68249226-68249245 MsG0380015307.01.T01:CDS 40.0%
! AAAAGTAAGTGATGGTGCTG+CGG - Chr3:68244728-68244747 MsG0380015307.01.T01:intron 40.0%
! AATTTCGCATCCACGCTTTT+AGG + Chr3:68244295-68244314 None:intergenic 40.0%
! ACTTTTCCCTCTCAGTATCA+GGG + Chr3:68249185-68249204 None:intergenic 40.0%
! AGCAAGGGGTTACAATTTTG+AGG + Chr3:68243697-68243716 None:intergenic 40.0%
! ATAATGGTGGAAGTAATGCC+AGG - Chr3:68244925-68244944 MsG0380015307.01.T01:intron 40.0%
! ATTTCGCATCCACGCTTTTA+GGG + Chr3:68244294-68244313 None:intergenic 40.0%
! ATTTTTGCTCTGTGGATGCA+TGG + Chr3:68248220-68248239 None:intergenic 40.0%
! CACTTGATTTCGGTGTATTC+CGG + Chr3:68243520-68243539 None:intergenic 40.0%
! CATTTAAGACCCTAAAAGCG+TGG - Chr3:68244282-68244301 MsG0380015307.01.T01:intron 40.0%
! CTCTCAATTGCAACGGTTTT+CGG - Chr3:68243850-68243869 MsG0380015307.01.T01:intron 40.0%
! GCAAGGGGTTACAATTTTGA+GGG + Chr3:68243696-68243715 None:intergenic 40.0%
! TGCAGTGAATTTCCTGGTTT+TGG - Chr3:68243813-68243832 MsG0380015307.01.T01:intron 40.0%
! TTTTTGCTCTGTGGATGCAT+GGG + Chr3:68248219-68248238 None:intergenic 40.0%
!! AAATACAAGGGCACTTTCTC+CGG + Chr3:68249259-68249278 None:intergenic 40.0%
!! CAATATGGTTTAGGTTGACC+TGG + Chr3:68243763-68243782 None:intergenic 40.0%
!! GTTTGTTTCTACACAGAGAG+AGG - Chr3:68249032-68249051 MsG0380015307.01.T01:CDS 40.0%
!! TATGAAAGACGGTTTGGTGA+AGG + Chr3:68248775-68248794 None:intergenic 40.0%
!! TGGTGAAGGCAAGTTTTATG+CGG + Chr3:68248761-68248780 None:intergenic 40.0%
!! TTTCGCAAAGCTCTAAGGTA+TGG + Chr3:68247769-68247788 None:intergenic 40.0%
!!! CCGGCAATCTTTTTGTTTTC+CGG + Chr3:68245792-68245811 None:intergenic 40.0%
!!! GTTACAATTTTGAGGGCACT+TGG + Chr3:68243689-68243708 None:intergenic 40.0%
!!! TTGGTTTTGCAACACAGTCA+TGG - Chr3:68246416-68246435 MsG0380015307.01.T01:intron 40.0%
AAATTTCTCACTGTTCCCGG+CGG + Chr3:68245829-68245848 None:intergenic 45.0%
AAGCTATAACCTGGTCCTTC+AGG + Chr3:68248037-68248056 None:intergenic 45.0%
AAGTGTGGATCATGTCCTTG+TGG - Chr3:68243535-68243554 MsG0380015307.01.T01:intron 45.0%
AATTTCCGACACACACACAC+TGG - Chr3:68248640-68248659 MsG0380015307.01.T01:intron 45.0%
ACGGGTAGTCAAATCACTAG+AGG + Chr3:68246167-68246186 None:intergenic 45.0%
AGCCACTATCAACAACTCAC+TGG + Chr3:68246749-68246768 None:intergenic 45.0%
AGGAGGACTCTCAATTGCAA+CGG - Chr3:68243843-68243862 MsG0380015307.01.T01:intron 45.0%
AGTCAAATCACTAGAGGCAG+AGG + Chr3:68246161-68246180 None:intergenic 45.0%
ATCAGCACCATCTGTTTGCA+GGG - Chr3:68246446-68246465 MsG0380015307.01.T01:intron 45.0%
ATTTCCGACACACACACACT+GGG - Chr3:68248641-68248660 MsG0380015307.01.T01:intron 45.0%
CACATACTGCACGCATTCTT+CGG + Chr3:68248361-68248380 None:intergenic 45.0%
CCCACCCTACATTATCTTCA+AGG + Chr3:68245135-68245154 None:intergenic 45.0%
CGTAGTCAGGAATTCAGCTT+AGG - Chr3:68246470-68246489 MsG0380015307.01.T01:intron 45.0%
CTGCAGTTCCCCAAATTTAC+CGG - Chr3:68248300-68248319 MsG0380015307.01.T01:intron 45.0%
GATGAAAAGAGCAGCAGAAC+AGG + Chr3:68246303-68246322 None:intergenic 45.0%
GCATATTTGCGGTAAGGTTG+AGG + Chr3:68249077-68249096 None:intergenic 45.0%
GCCTTGAAGATAATGTAGGG+TGG - Chr3:68245131-68245150 MsG0380015307.01.T01:intron 45.0%
GGCACATATACGAATCTTGG+TGG + Chr3:68243736-68243755 None:intergenic 45.0%
GGTAGAAAAGGGACCAACAA+AGG + Chr3:68247352-68247371 None:intergenic 45.0%
TCACCACATGTTTGTCCACA+AGG + Chr3:68243553-68243572 None:intergenic 45.0%
TCAGTAGTCGGTACCTTCTT+AGG + Chr3:68249342-68249361 None:intergenic 45.0%
TGCGAAATTCCTCGGAATTC+AGG - Chr3:68247782-68247801 MsG0380015307.01.T01:intron 45.0%
TGTCCTTGTGGACAAACATG+TGG - Chr3:68243547-68243566 MsG0380015307.01.T01:intron 45.0%
! CACTTTTCCCTCTCAGTATC+AGG + Chr3:68249186-68249205 None:intergenic 45.0%
! CAGTGTTGCTAATCATGGCA+TGG - Chr3:68247713-68247732 MsG0380015307.01.T01:intron 45.0%
! CTTTTCCCTCTCAGTATCAG+GGG + Chr3:68249184-68249203 None:intergenic 45.0%
! GACCAGTGAGTTGTTGATAG+TGG - Chr3:68246744-68246763 MsG0380015307.01.T01:intron 45.0%
! GCAGCACCATCACTTACTTT+TGG + Chr3:68244729-68244748 None:intergenic 45.0%
! TACTTGACAGGCTTGGTCTT+TGG - Chr3:68248257-68248276 MsG0380015307.01.T01:intron 45.0%
! TATGTCGCAACACCGGTTAT+CGG + Chr3:68249309-68249328 None:intergenic 45.0%
! TTGATTTCGGTGTATTCCGG+TGG + Chr3:68243517-68243536 None:intergenic 45.0%
! TTTTCCCTCTCAGTATCAGG+GGG + Chr3:68249183-68249202 None:intergenic 45.0%
!! AATACAAGGGCACTTTCTCC+GGG + Chr3:68249258-68249277 None:intergenic 45.0%
!! GATGAGAAGTGTCGAAAACC+AGG + Chr3:68248197-68248216 None:intergenic 45.0%
!! TATACGAATCTTGGTGGTGG+CGG + Chr3:68243730-68243749 None:intergenic 45.0%
!!! TTCCTGGTTTTGGCTTTAGG+AGG - Chr3:68243823-68243842 MsG0380015307.01.T01:intron 45.0%
!! TATAAAATTAAATTATATGA+TGG + Chr3:68249107-68249126 None:intergenic 5.0%
AACACCCAGTGTGTGTGTGT+CGG + Chr3:68248648-68248667 None:intergenic 50.0%
AAGGTGTGCCGAAACAGTCA+CGG + Chr3:68245382-68245401 None:intergenic 50.0%
ACAAACCCCCTGATACTGAG+AGG - Chr3:68249175-68249194 MsG0380015307.01.T01:CDS 50.0%
ACTACGTCCCTGCAAACAGA+TGG + Chr3:68246456-68246475 None:intergenic 50.0%
ATATTGCGGATGGGATGCCA+TGG - Chr3:68249007-68249026 MsG0380015307.01.T01:CDS 50.0%
CAAACCCCCTGATACTGAGA+GGG - Chr3:68249176-68249195 MsG0380015307.01.T01:CDS 50.0%
CATCAGCACCATCTGTTTGC+AGG - Chr3:68246445-68246464 MsG0380015307.01.T01:intron 50.0%
CTCCTCCTAAAGCCAAAACC+AGG + Chr3:68243828-68243847 None:intergenic 50.0%
GAAATTTACACGTTGCCGCC+GGG - Chr3:68245811-68245830 MsG0380015307.01.T01:intron 50.0%
GGAAATTTACACGTTGCCGC+CGG - Chr3:68245810-68245829 MsG0380015307.01.T01:intron 50.0%
GGCGGCAACGTGTAAATTTC+CGG + Chr3:68245811-68245830 None:intergenic 50.0%
TTCGTATATGTGCCAGTGCC+AGG - Chr3:68243742-68243761 MsG0380015307.01.T01:CDS 50.0%
! ATTTCGGTGTATTCCGGTGG+CGG + Chr3:68243514-68243533 None:intergenic 50.0%
! GACAGGCTTGGTCTTTGGAA+TGG - Chr3:68248262-68248281 MsG0380015307.01.T01:intron 50.0%
!! GAAGTGTCGAAAACCAGGCA+TGG + Chr3:68248192-68248211 None:intergenic 50.0%
!! GGCTTGGTCTTTGGAATGGT+TGG - Chr3:68248266-68248285 MsG0380015307.01.T01:intron 50.0%
!!! CAATTTTGAGGGCACTTGGG+AGG + Chr3:68243685-68243704 None:intergenic 50.0%
!!! CTGGTTTTGGCTTTAGGAGG+AGG - Chr3:68243826-68243845 MsG0380015307.01.T01:intron 50.0%
AGGTGTGCCGAAACAGTCAC+GGG + Chr3:68245381-68245400 None:intergenic 55.0%
CTGTTTGCAGGGACGTAGTC+AGG - Chr3:68246457-68246476 MsG0380015307.01.T01:intron 55.0%
GCATGCAGAGAGAAGACCTG+TGG + Chr3:68246219-68246238 None:intergenic 55.0%
GGAAGGTTGTGTTCCATGCC+TGG - Chr3:68248176-68248195 MsG0380015307.01.T01:intron 55.0%
GGGGAGACTGTGACCTTTGT+TGG - Chr3:68247336-68247355 MsG0380015307.01.T01:intron 55.0%
TACCAGGTTAGGGTGAAGCC+CGG - Chr3:68249237-68249256 MsG0380015307.01.T01:CDS 55.0%
! GCGGAGATGATGGTAGCAAG+GGG + Chr3:68243711-68243730 None:intergenic 55.0%
! GGCGGAGATGATGGTAGCAA+GGG + Chr3:68243712-68243731 None:intergenic 55.0%
! TGGCGGAGATGATGGTAGCA+AGG + Chr3:68243713-68243732 None:intergenic 55.0%
!! GGTGGTGTTGGTGGTTGACA+AGG + Chr3:68243607-68243626 None:intergenic 55.0%
!! GGTGTTGGTGGTTGACAAGG+AGG + Chr3:68243604-68243623 None:intergenic 55.0%
!! GGTTTAGGTTGACCTGGCAC+TGG + Chr3:68243757-68243776 None:intergenic 55.0%
!! GTTGGTGGTTGACAAGGAGG+CGG + Chr3:68243601-68243620 None:intergenic 55.0%
!!! TTTTGAGGGCACTTGGGAGG+AGG + Chr3:68243682-68243701 None:intergenic 55.0%
TCCGGTGATTGTTCCGCCAC+CGG - Chr3:68243498-68243517 MsG0380015307.01.T01:CDS 60.0%
!! CTTGGTGGTGGCGGAGATGA+TGG + Chr3:68243721-68243740 None:intergenic 60.0%
!! TCCGGTGGCGGAACAATCAC+CGG + Chr3:68243502-68243521 None:intergenic 60.0%
AGAGGAGGAGGCGGACAAGG+TGG + Chr3:68243649-68243668 None:intergenic 65.0%
CACTTGGGAGGAGGAGGAGG+AGG + Chr3:68243673-68243692 None:intergenic 65.0%
CTCCGGGCTTCACCCTAACC+TGG + Chr3:68249242-68249261 None:intergenic 65.0%
GAGGCGGAGGTGGAGGAGAT+TGG + Chr3:68243576-68243595 None:intergenic 65.0%
GGAAGAGGAGGAGGCGGACA+AGG + Chr3:68243652-68243671 None:intergenic 65.0%
GGAGGAGGAAGAGGAGGAGG+CGG + Chr3:68243658-68243677 None:intergenic 65.0%
GGAGGAGGAGGAAGAGGAGG+AGG + Chr3:68243661-68243680 None:intergenic 65.0%
GGAGGAGGAGGAGGAAGAGG+AGG + Chr3:68243664-68243683 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAAG+AGG + Chr3:68243667-68243686 None:intergenic 65.0%
GGTGGTTGACAAGGAGGCGG+TGG + Chr3:68243598-68243617 None:intergenic 65.0%
GGTTGACAAGGAGGCGGTGG+AGG + Chr3:68243595-68243614 None:intergenic 65.0%
TGACAAGGAGGCGGTGGAGG+CGG + Chr3:68243592-68243611 None:intergenic 65.0%
!! CAAGGTGGTGGAGGTGGTGG+TGG + Chr3:68243634-68243653 None:intergenic 65.0%
!! GGACAAGGTGGTGGAGGTGG+TGG + Chr3:68243637-68243656 None:intergenic 65.0%
!! TGAGGGCACTTGGGAGGAGG+AGG + Chr3:68243679-68243698 None:intergenic 65.0%
GGAGGAGGCGGACAAGGTGG+TGG + Chr3:68243646-68243665 None:intergenic 70.0%
GGGCACTTGGGAGGAGGAGG+AGG + Chr3:68243676-68243695 None:intergenic 70.0%
! GGAGGCGGACAAGGTGGTGG+AGG + Chr3:68243643-68243662 None:intergenic 70.0%
! GGTGGCGGTGGTGGTGTTGG+TGG + Chr3:68243616-68243635 None:intergenic 70.0%
!! GGCGGACAAGGTGGTGGAGG+TGG + Chr3:68243640-68243659 None:intergenic 70.0%
!! GGTGGTGGAGGTGGTGGTGG+CGG + Chr3:68243631-68243650 None:intergenic 70.0%
!! GGTGGTGGCGGTGGTGGTGT+TGG + Chr3:68243619-68243638 None:intergenic 70.0%
CAAGGAGGCGGTGGAGGCGG+AGG + Chr3:68243589-68243608 None:intergenic 75.0%
!! GGAGGTGGTGGTGGCGGTGG+TGG + Chr3:68243625-68243644 None:intergenic 75.0%
!! GGTGGAGGTGGTGGTGGCGG+TGG + Chr3:68243628-68243647 None:intergenic 75.0%
! GGAGGCGGTGGAGGCGGAGG+TGG + Chr3:68243586-68243605 None:intergenic 80.0%
! GGCGGTGGAGGCGGAGGTGG+AGG + Chr3:68243583-68243602 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 68243376 68249398 68243376 ID=MsG0380015307.01;Name=MsG0380015307.01
Chr3 mRNA 68243376 68249398 68243376 ID=MsG0380015307.01.T01;Parent=MsG0380015307.01;Name=MsG0380015307.01.T01;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.75|1|1|4|0|289
Chr3 exon 68248910 68249398 68248910 ID=MsG0380015307.01.T01:exon:13560;Parent=MsG0380015307.01.T01
Chr3 exon 68244971 68245122 68244971 ID=MsG0380015307.01.T01:exon:13559;Parent=MsG0380015307.01.T01
Chr3 exon 68243721 68243793 68243721 ID=MsG0380015307.01.T01:exon:13558;Parent=MsG0380015307.01.T01
Chr3 exon 68243376 68243531 68243376 ID=MsG0380015307.01.T01:exon:13557;Parent=MsG0380015307.01.T01
Chr3 CDS 68248910 68249398 68248910 ID=MsG0380015307.01.T01:cds;Parent=MsG0380015307.01.T01
Chr3 CDS 68244971 68245122 68244971 ID=MsG0380015307.01.T01:cds;Parent=MsG0380015307.01.T01
Chr3 CDS 68243721 68243793 68243721 ID=MsG0380015307.01.T01:cds;Parent=MsG0380015307.01.T01
Chr3 CDS 68243376 68243531 68243376 ID=MsG0380015307.01.T01:cds;Parent=MsG0380015307.01.T01
Gene Sequence

>MsG0380015307.01.T01

ATGGCTTCTCCAACTCACAATTTGAGGATTCAAAAGGCTACAATAGTGTTACTCATTATATGTATTTCATTTTCCTCTTCAACTGAAGAAACCATAATAACATCTCCAAAGAAGTTAGACTATCCGGTGATTGTTCCGCCACCGGAATACACCGAAATCAAGTGTGGATCATGTCCTTGTGGACAAACATGTGGTGACCAATCTCCTCCACCTCCGCCTCCACCGCCTCCTTGTCAACCACCAACACCACCACCGCCACCACCACCTCCACCACCTTGTCCGCCTCCTCCTCTTCCTCCTCCTCCTCCTCCCAAGTGCCCTCAAAATTGTAACCCCTTGCTACCATCATCTCCGCCACCACCAAGATTCGTATATGTGCCAGTGCCAGGTCAACCTAAACCATATTGGATATATTATTACTCTAGAGCTGAAAGTAATGCAGTGAATTTCCTGGTTTTGGCTTTAGGAGGAGGACTCTCAATTGCAACGAAGTTCACAACTATTTCTTTTCAATCAGATAGTACTGAATGTCCTATTATTGTAGGGAAATCAGTGTTGCTAATCATGGCATGGTCTAGTATAAGTAGGAGAACTCATCTATCGCCATACCTTAGAGCTTTGCGAAATTCCTCGGAATTCAGGGAAATTGTGGTACATTTCAATGCTGATATTGCGGATGGGATGCCATGGAAGTTTGTTTCTACACAGAGAGAGGTTAGGGTGAAGCCCGGAGAAAGTGCCCTTGTATTTTATACCGCAGAAAACAAAAGTTCTACTCCGATAACCGGTGTTGCGACATATAATGTCACTCCTAAGAAGGTACCGACTACTGAAGAATACTCTATATTGCATAATGGAAGTTTCCTTTGA
Protein sequence

>MsG0380015307.01.T01

MASPTHNLRIQKATIVLLIICISFSSSTEETIITSPKKLDYPVIVPPPEYTEIKCGSCPCGQTCGDQSPPPPPPPPPCQPPTPPPPPPPPPPCPPPPLPPPPPPKCPQNCNPLLPSSPPPPRFVYVPVPGQPKPYWIYYYSRAESNAVNFLVLALGGGLSIATKFTTISFQSDSTECPIIVGKSVLLIMAWSSISRRTHLSPYLRALRNSSEFREIVVHFNADIADGMPWKFVSTQREVRVKPGESALVFYTAENKSSTPITGVATYNVTPKKVPTTEEYSILHNGSFL*