AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015780.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015780.01.T01 MTR_3g110030 94.845 97 5 0 55 151 1 97 1.46e-62 187
MsG0380015780.01.T01 MTR_7g089300 74.227 97 25 0 55 151 1 97 1.89e-48 151
MsG0380015780.01.T01 MTR_3g077350 84.706 85 13 0 55 139 1 85 7.30e-47 147
MsG0380015780.01.T01 MTR_3g089960 88.095 42 5 0 110 151 212 253 1.99e-19 82.0
MsG0380015780.01.T01 MTR_3g077580 91.667 36 3 0 55 90 1 36 3.16e-16 69.7
MsG0380015780.01.T01 MTR_2g043230 40.000 95 55 2 57 149 159 253 1.61e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015780.01.T01 AT1G23100 74.227 97 25 0 55 151 1 97 2.43e-51 159
MsG0380015780.01.T01 AT1G14980 72.165 97 27 0 55 151 1 97 1.03e-49 155
MsG0380015780.01.T01 AT1G14980 70.732 82 24 0 55 136 1 82 2.24e-38 125

Find 52 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGTCATCAAGCTTAATT+TGG 0.119195 3:+74952315 None:intergenic
GTTTAGGGATGAGGACATTT+TGG 0.181417 3:-74952174 MsG0380015780.01.T01:CDS
TTTCAGGTTCCATTTGTTTA+GGG 0.258181 3:-74952189 MsG0380015780.01.T01:intron
TTGACGGTGTAGCATTTCTT+TGG 0.311626 3:-74952138 MsG0380015780.01.T01:exon
CCTGGGTTGCGAGACAAATC+TGG 0.318556 3:-74952401 MsG0380015780.01.T01:CDS
GTGTAGCATTTCTTTGGAAA+TGG 0.327889 3:-74952132 MsG0380015780.01.T01:three_prime_UTR
TTGGAAATGGAAATTATGAT+TGG 0.347804 3:-74952119 MsG0380015780.01.T01:three_prime_UTR
AAGGTGGTAGCTGTTGGTCC+TGG 0.358380 3:-74952419 MsG0380015780.01.T01:CDS
GAGAATACCGGCGGAGGTCT+TGG 0.361115 3:+74952475 None:intergenic
ATTTGGGAGCCACCATATTC+CGG 0.363161 3:+74952332 None:intergenic
TTAAGCTGGGAAGTCTTCTC+TGG 0.397570 3:+74952449 None:intergenic
TAACGGACTTCAAGTTTAAC+CGG 0.416121 3:+74956386 None:intergenic
TTTGTCATCAAGCTTAATTT+GGG 0.416340 3:+74952316 None:intergenic
CCATTTGCTTCTCTTCCTGA+TGG 0.417824 3:+74952555 None:intergenic
AGGTGACCACGTGCTCTTGC+CGG 0.430535 3:-74952351 MsG0380015780.01.T01:CDS
CACGTGCTCTTGCCGGAATA+TGG 0.430635 3:-74952344 MsG0380015780.01.T01:CDS
CTTCAACTCGTCCAACTTGT+CGG 0.433518 3:+74956322 None:intergenic
TGTCCTCATCCCTAAACAAA+TGG 0.441581 3:+74952180 None:intergenic
GTTCCATTTGTTTAGGGATG+AGG 0.449740 3:-74952183 MsG0380015780.01.T01:CDS
CCACCTTTGCTGAATTAAGC+TGG 0.450426 3:+74952435 None:intergenic
TGGAAATGGAAATTATGATT+GGG 0.450809 3:-74952118 MsG0380015780.01.T01:three_prime_UTR
TTCTACGAGGATGCGGTTGA+AGG 0.455539 3:+74952514 None:intergenic
ATTCCATTGTCTGTCAAAGA+AGG 0.468211 3:-74952371 MsG0380015780.01.T01:CDS
GTCTGAAGATGCACAAGATC+CGG 0.474515 3:-74956405 MsG0380015780.01.T01:CDS
CGACAAGTTGGACGAGTTGA+AGG 0.485839 3:-74956321 MsG0380015780.01.T01:CDS
ACGAGGATGCGGTTGAAGGT+TGG 0.500516 3:+74952518 None:intergenic
CTTCTCTGGGAGGAGAATAC+CGG 0.509700 3:+74952463 None:intergenic
CACCTTTGCTGAATTAAGCT+GGG 0.525240 3:+74952436 None:intergenic
TGGGCATTCTGCATGATTGA+CGG 0.526635 3:-74952154 MsG0380015780.01.T01:exon
TGTAAACCTCACCGACAAGT+TGG 0.529863 3:-74956333 MsG0380015780.01.T01:CDS
CCGGCGGAGGTCTTGGAAGG+AGG 0.534438 3:+74952482 None:intergenic
AGGTGGTAGCTGTTGGTCCT+GGG 0.536005 3:-74952418 MsG0380015780.01.T01:CDS
TGGACGCCTACAGCTCCATC+AGG 0.536652 3:-74952570 MsG0380015780.01.T01:intron
CTGGGTTGCGAGACAAATCT+GGG 0.543620 3:-74952400 MsG0380015780.01.T01:CDS
CGGCGGAGGTCTTGGAAGGA+GGG 0.557534 3:+74952483 None:intergenic
TTTAGTGTCAAACATTTGAG+AGG 0.564256 3:-74952079 MsG0380015780.01.T01:three_prime_UTR
TCACCTTCTTTGACAGACAA+TGG 0.564478 3:+74952368 None:intergenic
CCAGATTTGTCTCGCAACCC+AGG 0.568286 3:+74952401 None:intergenic
CCAGCTTAATTCAGCAAAGG+TGG 0.576003 3:-74952435 MsG0380015780.01.T01:CDS
CCATCAGGAAGAGAAGCAAA+TGG 0.576504 3:-74952555 MsG0380015780.01.T01:CDS
CCTCCTTCCAAGACCTCCGC+CGG 0.582903 3:-74952482 MsG0380015780.01.T01:CDS
TTAGTGTCAAACATTTGAGA+GGG 0.585889 3:-74952078 MsG0380015780.01.T01:three_prime_UTR
TCAGCAAAGGTGGTAGCTGT+TGG 0.591051 3:-74952425 MsG0380015780.01.T01:CDS
TTCCCAGCTTAATTCAGCAA+AGG 0.592493 3:-74952438 MsG0380015780.01.T01:CDS
ATACCGGCGGAGGTCTTGGA+AGG 0.597082 3:+74952479 None:intergenic
TAAGCTGGGAAGTCTTCTCT+GGG 0.609151 3:+74952450 None:intergenic
GTGCTCTTGCCGGAATATGG+TGG 0.611791 3:-74952341 MsG0380015780.01.T01:CDS
ACTCGTCCAACTTGTCGGTG+AGG 0.622425 3:+74956327 None:intergenic
TGGGAGGAGAATACCGGCGG+AGG 0.622626 3:+74952469 None:intergenic
CATATTCCGGCAAGAGCACG+TGG 0.633716 3:+74952345 None:intergenic
CTCTGGGAGGAGAATACCGG+CGG 0.652833 3:+74952466 None:intergenic
GCTGGGAAGTCTTCTCTGGG+AGG 0.712584 3:+74952453 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTATTATTAAATAA+TGG - Chr3:74954110-74954129 MsG0380015780.01.T01:intron 0.0%
!!! ATAATTTTTCATATTTTTAG+TGG + Chr3:74953594-74953613 None:intergenic 10.0%
!!! GGAATTTAATTTTTTTTTTA+AGG + Chr3:74953116-74953135 None:intergenic 10.0%
!!! GTTTTTTTATTTCAATTTAA+CGG - Chr3:74953785-74953804 MsG0380015780.01.T01:intron 10.0%
!!! TTAATTTTATTGTTCTAATT+TGG - Chr3:74954793-74954812 MsG0380015780.01.T01:intron 10.0%
!!! TTTTTTTATTTCAATTTAAC+GGG - Chr3:74953786-74953805 MsG0380015780.01.T01:intron 10.0%
!! ACAATGTAAAAATATATGAA+AGG - Chr3:74953543-74953562 MsG0380015780.01.T01:intron 15.0%
!!! ATATTTCATCACAATATTTT+AGG + Chr3:74956346-74956365 None:intergenic 15.0%
!!! ATTTATTTTGCATTTTTGAT+AGG - Chr3:74954896-74954915 MsG0380015780.01.T01:intron 15.0%
!!! TTTCATATTTTTTGTTTTTG+AGG - Chr3:74955011-74955030 MsG0380015780.01.T01:intron 15.0%
!!! TTTTTTTTTTAAGGAACAAT+AGG + Chr3:74953107-74953126 None:intergenic 15.0%
!! AAAGAATAAACTTATTCAGA+CGG + Chr3:74955093-74955112 None:intergenic 20.0%
!! AAAGAATAAATCTATTCAGA+CGG + Chr3:74955669-74955688 None:intergenic 20.0%
!! ACATGTTGAACTATATTTAT+TGG - Chr3:74954019-74954038 MsG0380015780.01.T01:intron 20.0%
!! ACTATTTATCTTAGTATCAA+AGG + Chr3:74954574-74954593 None:intergenic 20.0%
!! AGAAAATTTAGTGTTAAATG+TGG + Chr3:74952793-74952812 None:intergenic 20.0%
!! ATCCAATAATATTGTTAAAC+TGG - Chr3:74952337-74952356 MsG0380015780.01.T01:CDS 20.0%
!! ATTCTTTGATGTAAATATCT+TGG - Chr3:74955106-74955125 MsG0380015780.01.T01:intron 20.0%
!! ATTCTTTGATGTAAATTTCT+TGG - Chr3:74955682-74955701 MsG0380015780.01.T01:intron 20.0%
!! GAAAATCAACAAAAATTGAA+GGG + Chr3:74955559-74955578 None:intergenic 20.0%
!! GTTAAACTTGAAAGTTATTA+AGG + Chr3:74952961-74952980 None:intergenic 20.0%
!! TAAGTGTGTTTAAATGATTA+CGG - Chr3:74952204-74952223 MsG0380015780.01.T01:intron 20.0%
!! TATGATGATAAAAACATATC+TGG - Chr3:74955062-74955081 MsG0380015780.01.T01:intron 20.0%
!! TTACAGATTTAGTACAATTT+GGG - Chr3:74954184-74954203 MsG0380015780.01.T01:intron 20.0%
!! TTTACAGATTTAGTACAATT+TGG - Chr3:74954183-74954202 MsG0380015780.01.T01:intron 20.0%
!!! AGATATGTTTTTATCATCAT+AGG + Chr3:74955063-74955082 None:intergenic 20.0%
!!! ATTGATGAGCTATTTTTATT+AGG - Chr3:74953340-74953359 MsG0380015780.01.T01:intron 20.0%
!!! CTTCAATTTTTGTTGATTTT+CGG - Chr3:74955558-74955577 MsG0380015780.01.T01:intron 20.0%
!!! TTCAATTTTTGTTGATTTTC+GGG - Chr3:74955559-74955578 MsG0380015780.01.T01:intron 20.0%
!!! TTGATGAGCTATTTTTATTA+GGG - Chr3:74953341-74953360 MsG0380015780.01.T01:intron 20.0%
!!! TTTTTAAACGGAATATTGAT+GGG + Chr3:74953394-74953413 None:intergenic 20.0%
! AACTAAAAAGATCAATGGTT+TGG - Chr3:74953144-74953163 MsG0380015780.01.T01:intron 25.0%
! AAGGAACAATAGGAATTTAA+TGG + Chr3:74953097-74953116 None:intergenic 25.0%
! AAGTGTGTTTAAATGATTAC+GGG - Chr3:74952205-74952224 MsG0380015780.01.T01:intron 25.0%
! AGAAATGTAATTGCACAAAT+CGG + Chr3:74954957-74954976 None:intergenic 25.0%
! ATAAATTACCCCTAATTCAT+CGG - Chr3:74953053-74953072 MsG0380015780.01.T01:intron 25.0%
! ATGGACAAATTTGTGTAATT+TGG - Chr3:74952165-74952184 MsG0380015780.01.T01:CDS 25.0%
! ATTACATAGTCTCACATAAA+CGG + Chr3:74952134-74952153 None:intergenic 25.0%
! ATTTATCCATAATGACAACT+AGG + Chr3:74953039-74953058 None:intergenic 25.0%
! CGAAAATCAACAAAAATTGA+AGG + Chr3:74955560-74955579 None:intergenic 25.0%
! CTTGAAAGTTATTAAGGTAT+CGG + Chr3:74952955-74952974 None:intergenic 25.0%
! CTTTATACTTTATAAGCTCT+AGG + Chr3:74954234-74954253 None:intergenic 25.0%
! GAAATGTGAAAAACAAAACA+AGG - Chr3:74953970-74953989 MsG0380015780.01.T01:intron 25.0%
! TACAGATTTAGTACAATTTG+GGG - Chr3:74954185-74954204 MsG0380015780.01.T01:intron 25.0%
! TCAATATTCCGTTTAAAAAG+AGG - Chr3:74953395-74953414 MsG0380015780.01.T01:intron 25.0%
! TGGAAATGGAAATTATGATT+GGG - Chr3:74956268-74956287 MsG0380015780.01.T01:intron 25.0%
! TGTCAAACTAAAAAGATCAA+TGG - Chr3:74953139-74953158 MsG0380015780.01.T01:intron 25.0%
! TTATGTAGATGTGAAAAAGA+AGG - Chr3:74952020-74952039 MsG0380015780.01.T01:three_prime_UTR 25.0%
! TTGGAAATGGAAATTATGAT+TGG - Chr3:74956267-74956286 MsG0380015780.01.T01:intron 25.0%
! TTTGTCATCAAGCTTAATTT+GGG + Chr3:74956073-74956092 None:intergenic 25.0%
!! ATGACAAAGAGTATGTAATA+TGG - Chr3:74956085-74956104 MsG0380015780.01.T01:intron 25.0%
!! ATGATTAACACTCTTGATTT+TGG + Chr3:74955431-74955450 None:intergenic 25.0%
!! CTTTTTAAACGGAATATTGA+TGG + Chr3:74953395-74953414 None:intergenic 25.0%
!! TGAATGTGTTTCTTTTTATG+TGG - Chr3:74956130-74956149 MsG0380015780.01.T01:intron 25.0%
!! TTGTGAAAAAAACGATGTTT+TGG - Chr3:74952287-74952306 MsG0380015780.01.T01:intron 25.0%
!!! AAAGTATAAAGAGCACTTTT+CGG - Chr3:74954243-74954262 MsG0380015780.01.T01:intron 25.0%
!!! ATGTATAACCCATTTTTTAG+TGG + Chr3:74953900-74953919 None:intergenic 25.0%
!!! GATCTTTTTAGTTTGACAAT+AGG + Chr3:74953137-74953156 None:intergenic 25.0%
!!! GTTGTTTTGATGAATTAGTT+CGG - Chr3:74954520-74954539 MsG0380015780.01.T01:intron 25.0%
!!! TACAAGTTGCTTTATTTTTC+AGG - Chr3:74956181-74956200 MsG0380015780.01.T01:intron 25.0%
!!! TCAATTTTTGTTGATTTTCG+GGG - Chr3:74955560-74955579 MsG0380015780.01.T01:intron 25.0%
!!! TCCTTGAAATCTTATTTCTA+CGG + Chr3:74953202-74953221 None:intergenic 25.0%
!!! TCTTTTTCACATCTACATAA+CGG + Chr3:74952020-74952039 None:intergenic 25.0%
!!! TGTATAACCCATTTTTTAGT+GGG + Chr3:74953899-74953918 None:intergenic 25.0%
AAAAGTTAGGGATGATCAAA+TGG + Chr3:74953943-74953962 None:intergenic 30.0%
AAAGTTAGGGATGATCAAAT+GGG + Chr3:74953942-74953961 None:intergenic 30.0%
AACAAGGTTACAAACAATCT+TGG - Chr3:74953986-74954005 MsG0380015780.01.T01:intron 30.0%
ACAAGGTTACAAACAATCTT+GGG - Chr3:74953987-74954006 MsG0380015780.01.T01:intron 30.0%
ACAATAGGAATTTAATGGTG+AGG + Chr3:74953092-74953111 None:intergenic 30.0%
ACAGATTTAGTACAATTTGG+GGG - Chr3:74954186-74954205 MsG0380015780.01.T01:intron 30.0%
AGAAATGTAATCGCACAAAT+CGG + Chr3:74955509-74955528 None:intergenic 30.0%
AGTGAACTGAGAAATAACTA+TGG - Chr3:74954050-74954069 MsG0380015780.01.T01:intron 30.0%
ATATTCCGTTTAAAAAGAGG+TGG - Chr3:74953398-74953417 MsG0380015780.01.T01:intron 30.0%
ATGAGTTACCAATTGACTAA+CGG - Chr3:74953684-74953703 MsG0380015780.01.T01:intron 30.0%
ATTGTTAAACTGGCGTAATT+AGG - Chr3:74952347-74952366 MsG0380015780.01.T01:CDS 30.0%
ATTTCAAGGAAAGCTAATGT+CGG - Chr3:74953212-74953231 MsG0380015780.01.T01:intron 30.0%
ATTTCTGATCGCAAAAGTTA+GGG + Chr3:74953955-74953974 None:intergenic 30.0%
CACGTCATTAATTAATTCCT+TGG - Chr3:74955796-74955815 MsG0380015780.01.T01:intron 30.0%
CGCCAGTTTAACAATATTAT+TGG + Chr3:74952342-74952361 None:intergenic 30.0%
CTTTGTCATCAAGCTTAATT+TGG + Chr3:74956074-74956093 None:intergenic 30.0%
GAGAATTCCTAAAAACTCAA+TGG + Chr3:74953270-74953289 None:intergenic 30.0%
GTAATCTTACAAGCCTTTAT+AGG + Chr3:74952743-74952762 None:intergenic 30.0%
GTTCAATTACGAGCATATTA+GGG - Chr3:74952369-74952388 MsG0380015780.01.T01:CDS 30.0%
TAAATTACCCCTAATTCATC+GGG - Chr3:74953054-74953073 MsG0380015780.01.T01:intron 30.0%
TATGATGTTTAAAAAGCGAG+TGG + Chr3:74955759-74955778 None:intergenic 30.0%
TCCGTAGAAATAAGATTTCA+AGG - Chr3:74953198-74953217 MsG0380015780.01.T01:intron 30.0%
TTACTTGTTTCATGGTTTCA+AGG + Chr3:74953245-74953264 None:intergenic 30.0%
TTAGTGTCAAACATTTGAGA+GGG - Chr3:74956308-74956327 MsG0380015780.01.T01:CDS 30.0%
TTCATAAACCGTTAGTCAAT+TGG + Chr3:74953695-74953714 None:intergenic 30.0%
TTTAGTGTCAAACATTTGAG+AGG - Chr3:74956307-74956326 MsG0380015780.01.T01:CDS 30.0%
TTTGAACTTGTGTACAACTA+GGG + Chr3:74953864-74953883 None:intergenic 30.0%
! AATGATGATGAAACTTGAAC+TGG - Chr3:74955638-74955657 MsG0380015780.01.T01:intron 30.0%
! AGTAAAGCCATTGAGTTTTT+AGG - Chr3:74953260-74953279 MsG0380015780.01.T01:intron 30.0%
! AGTGTTAAATGTGGCATTTT+TGG + Chr3:74952784-74952803 None:intergenic 30.0%
! AGTTCAAGTTTCATCATCAT+TGG + Chr3:74955639-74955658 None:intergenic 30.0%
! ATGAGATTTGTTCTTTGGAT+CGG + Chr3:74955200-74955219 None:intergenic 30.0%
! CATCGTTTGGAACTAAAAAT+TGG + Chr3:74954140-74954159 None:intergenic 30.0%
! GTGTTAAATGTGGCATTTTT+GGG + Chr3:74952783-74952802 None:intergenic 30.0%
! GTTTAAAATGAGTCTCTTGA+GGG - Chr3:74955278-74955297 MsG0380015780.01.T01:intron 30.0%
! TTTTCACATTTTCAGCTGTA+GGG - Chr3:74954418-74954437 MsG0380015780.01.T01:intron 30.0%
! TTTTGAACTTGTGTACAACT+AGG + Chr3:74953865-74953884 None:intergenic 30.0%
! TTTTTCACATTTTCAGCTGT+AGG - Chr3:74954417-74954436 MsG0380015780.01.T01:intron 30.0%
!! AAATTGATTTGAAAACCCTC+AGG + Chr3:74954767-74954786 None:intergenic 30.0%
!! ACTCTAAAGAGTGTTAAGTA+TGG + Chr3:74952872-74952891 None:intergenic 30.0%
!! TACTTTATAAGCTCTAGGTT+CGG + Chr3:74954229-74954248 None:intergenic 30.0%
!! TAGTTCGGTTTTGTGATATA+GGG - Chr3:74954535-74954554 MsG0380015780.01.T01:intron 30.0%
!! TCGCAAACTCATTTTTAAAG+TGG - Chr3:74953288-74953307 MsG0380015780.01.T01:intron 30.0%
!! TTAGTTCGGTTTTGTGATAT+AGG - Chr3:74954534-74954553 MsG0380015780.01.T01:intron 30.0%
!! TTTCAGGTTCCATTTGTTTA+GGG - Chr3:74956197-74956216 MsG0380015780.01.T01:intron 30.0%
!!! CAATTTTTAGTTCCAAACGA+TGG - Chr3:74954138-74954157 MsG0380015780.01.T01:intron 30.0%
!!! TTTTCAGGTTCCATTTGTTT+AGG - Chr3:74956196-74956215 MsG0380015780.01.T01:intron 30.0%
AAATGATTACGGGTCATTAC+CGG - Chr3:74952215-74952234 MsG0380015780.01.T01:intron 35.0%
AACCCATCCCACTAAAAAAT+GGG - Chr3:74953889-74953908 MsG0380015780.01.T01:intron 35.0%
ACGATGATCTTTGTAGCATT+TGG + Chr3:74954335-74954354 None:intergenic 35.0%
ACTAGTCCTACTTTCTCAAA+CGG + Chr3:74952715-74952734 None:intergenic 35.0%
AGGATCTCCCAATAATTGAT+AGG - Chr3:74954616-74954635 MsG0380015780.01.T01:intron 35.0%
ATACCAACAAATGATATCGG+CGG + Chr3:74954694-74954713 None:intergenic 35.0%
ATCACACATAACGATCCAAA+CGG + Chr3:74952260-74952279 None:intergenic 35.0%
ATGTATAATACCCAGTGATG+AGG - Chr3:74954596-74954615 MsG0380015780.01.T01:intron 35.0%
ATGTGCATTGAATGCAGTTT+GGG + Chr3:74952401-74952420 None:intergenic 35.0%
ATTACGAGCATATTAGGGTT+TGG - Chr3:74952374-74952393 MsG0380015780.01.T01:CDS 35.0%
ATTCCATTGTCTGTCAAAGA+AGG - Chr3:74956015-74956034 MsG0380015780.01.T01:intron 35.0%
CAGATTTAGTACAATTTGGG+GGG - Chr3:74954187-74954206 MsG0380015780.01.T01:intron 35.0%
CATTTCTGATCGCAAAAGTT+AGG + Chr3:74953956-74953975 None:intergenic 35.0%
CATTTGTTTCGCATTCTGAT+AGG - Chr3:74955448-74955467 MsG0380015780.01.T01:intron 35.0%
CCAACAACAACAAATGGTAT+CGG + Chr3:74955226-74955245 None:intergenic 35.0%
CCGATACCAACAAATGATAT+CGG + Chr3:74954697-74954716 None:intergenic 35.0%
CGATGATCTTTGTAGCATTT+GGG + Chr3:74954334-74954353 None:intergenic 35.0%
CTCTCGTTCTTCAAGAAATT+AGG + Chr3:74952912-74952931 None:intergenic 35.0%
CTGATCAAAGATGCTATGAT+TGG - Chr3:74955404-74955423 MsG0380015780.01.T01:intron 35.0%
GGCACTTCCTATCAATTATT+GGG + Chr3:74954626-74954645 None:intergenic 35.0%
GGTTCAATTACGAGCATATT+AGG - Chr3:74952368-74952387 MsG0380015780.01.T01:CDS 35.0%
TAGATGTGAAAAAGAAGGCT+TGG - Chr3:74952025-74952044 MsG0380015780.01.T01:three_prime_UTR 35.0%
TATGTGCATTGAATGCAGTT+TGG + Chr3:74952402-74952421 None:intergenic 35.0%
TCCAAATTACACAAATTCGC+CGG + Chr3:74952237-74952256 None:intergenic 35.0%
TCGAATCCTAGTTGTCATTA+TGG - Chr3:74953030-74953049 MsG0380015780.01.T01:intron 35.0%
TGACAACTAGGATTCGATTA+TGG + Chr3:74953027-74953046 None:intergenic 35.0%
TGATGTAAATATCTTGGCTG+TGG - Chr3:74955112-74955131 MsG0380015780.01.T01:intron 35.0%
TGATGTAAATTTCTTGGCTG+TGG - Chr3:74955688-74955707 MsG0380015780.01.T01:intron 35.0%
TTTGTGTAATTTGGACCGTT+TGG - Chr3:74952242-74952261 MsG0380015780.01.T01:intron 35.0%
! ATATCATTTGTTGGTATCGG+CGG - Chr3:74954697-74954716 MsG0380015780.01.T01:intron 35.0%
! CAATGGCTTTACTTGTTTCA+TGG + Chr3:74953253-74953272 None:intergenic 35.0%
! CCGATATCATTTGTTGGTAT+CGG - Chr3:74954694-74954713 MsG0380015780.01.T01:intron 35.0%
! GAGAGCAAAATTCTTTTCGT+AGG - Chr3:74952684-74952703 MsG0380015780.01.T01:intron 35.0%
! GATGAGATCATTCTCTGAAA+CGG + Chr3:74954672-74954691 None:intergenic 35.0%
! GGTTTAAAATGAGTCTCTTG+AGG - Chr3:74955277-74955296 MsG0380015780.01.T01:intron 35.0%
! GTGTAGCATTTCTTTGGAAA+TGG - Chr3:74956254-74956273 MsG0380015780.01.T01:intron 35.0%
! GTGTTAAGTATGGCACTTTT+AGG + Chr3:74952862-74952881 None:intergenic 35.0%
! TTTACTGATTGTGAGCTACT+AGG + Chr3:74954294-74954313 None:intergenic 35.0%
! TTTAGGGATGAGGACATTTT+GGG - Chr3:74956213-74956232 MsG0380015780.01.T01:intron 35.0%
!! AAATCGGCTCTGAAAAATCA+TGG + Chr3:74954941-74954960 None:intergenic 35.0%
!! TAACGGACTTCAAGTTTAAC+CGG + Chr3:74952003-74952022 None:intergenic 35.0%
!! TAGGGCATCACATTTGTTTT+GGG + Chr3:74954269-74954288 None:intergenic 35.0%
!! TTAGGGCATCACATTTGTTT+TGG + Chr3:74954270-74954289 None:intergenic 35.0%
!! TTTTATGTGGACTGCTAACT+TGG - Chr3:74956143-74956162 MsG0380015780.01.T01:intron 35.0%
!!! AACCCATTTTTTAGTGGGAT+GGG + Chr3:74953894-74953913 None:intergenic 35.0%
!!! CAATTTTTTCTACGAGGATG+CGG + Chr3:74955882-74955901 None:intergenic 35.0%
!!! TAACCCATTTTTTAGTGGGA+TGG + Chr3:74953895-74953914 None:intergenic 35.0%
ACATTACCTCCCGATGAATT+AGG + Chr3:74953066-74953085 None:intergenic 40.0%
ACCGGCGAATTTGTGTAATT+TGG - Chr3:74952233-74952252 MsG0380015780.01.T01:intron 40.0%
ACGGATCAATTCGAGATGTA+GGG - Chr3:74953427-74953446 MsG0380015780.01.T01:intron 40.0%
ATATGTAGCTATCAGAGACG+TGG + Chr3:74955375-74955394 None:intergenic 40.0%
ATGACAAGCACTCCTGATAT+TGG + Chr3:74954878-74954897 None:intergenic 40.0%
ATTACCTCCCGATGAATTAG+GGG + Chr3:74953064-74953083 None:intergenic 40.0%
ATTGATGGGACAAAGTGAGT+TGG + Chr3:74953380-74953399 None:intergenic 40.0%
ATTGTGAGCTACTAGGCTTA+GGG + Chr3:74954287-74954306 None:intergenic 40.0%
CAACCCATCCCACTAAAAAA+TGG - Chr3:74953888-74953907 MsG0380015780.01.T01:intron 40.0%
CACCTTTGCTGAATTAAGCT+GGG + Chr3:74955953-74955972 None:intergenic 40.0%
CATTACCTCCCGATGAATTA+GGG + Chr3:74953065-74953084 None:intergenic 40.0%
CGGCACTTCCTATCAATTAT+TGG + Chr3:74954627-74954646 None:intergenic 40.0%
GATGGATCAATACGATGTGA+GGG - Chr3:74954156-74954175 MsG0380015780.01.T01:intron 40.0%
GCTATGATTGGACCAATATC+AGG - Chr3:74954863-74954882 MsG0380015780.01.T01:intron 40.0%
GCTGTGTGTGAGATTTGAAA+CGG - Chr3:74954737-74954756 MsG0380015780.01.T01:intron 40.0%
GTTCCATTTGTTTAGGGATG+AGG - Chr3:74956203-74956222 MsG0380015780.01.T01:intron 40.0%
TCACCTTCTTTGACAGACAA+TGG + Chr3:74956021-74956040 None:intergenic 40.0%
TCTCGACCAACAACAACAAA+TGG + Chr3:74955232-74955251 None:intergenic 40.0%
TGTCCTCATCCCTAAACAAA+TGG + Chr3:74956209-74956228 None:intergenic 40.0%
TTAGGGATGATCAAATGGGT+TGG + Chr3:74953938-74953957 None:intergenic 40.0%
TTCCCAGCTTAATTCAGCAA+AGG - Chr3:74955948-74955967 MsG0380015780.01.T01:intron 40.0%
TTGACGGTGTAGCATTTCTT+TGG - Chr3:74956248-74956267 MsG0380015780.01.T01:intron 40.0%
! CATCGTATTGATCCATCGTT+TGG + Chr3:74954153-74954172 None:intergenic 40.0%
! CATTGTTGTTGTTGTTGTGG+TGG - Chr3:74955584-74955603 MsG0380015780.01.T01:intron 40.0%
! CTGCTCCACCTCTTTTTAAA+CGG + Chr3:74953406-74953425 None:intergenic 40.0%
! CTGCTGTTTAGAGTGTCATA+CGG + Chr3:74954647-74954666 None:intergenic 40.0%
! CTGTGTGTGAGATTTGAAAC+GGG - Chr3:74954738-74954757 MsG0380015780.01.T01:intron 40.0%
! GGACTAGTGTTTGCCTATAA+AGG - Chr3:74952727-74952746 MsG0380015780.01.T01:intron 40.0%
! GGCAGATGAGATTTGTTCTT+TGG + Chr3:74955205-74955224 None:intergenic 40.0%
! GGTCATTGTTGTTGTTGTTG+TGG - Chr3:74955581-74955600 MsG0380015780.01.T01:intron 40.0%
! GTTTAGGGATGAGGACATTT+TGG - Chr3:74956212-74956231 MsG0380015780.01.T01:intron 40.0%
! TAGGGTTTTGCTAGGGTTTT+AGG - Chr3:74954436-74954455 MsG0380015780.01.T01:intron 40.0%
!! CCGATACCATTTGTTGTTGT+TGG - Chr3:74955223-74955242 MsG0380015780.01.T01:intron 40.0%
!!! GAGGGACAATTTTTTCTACG+AGG + Chr3:74955888-74955907 None:intergenic 40.0%
ATATCTTGGCTGTGGTACTG+AGG - Chr3:74955120-74955139 MsG0380015780.01.T01:intron 45.0%
ATGTTTAGCTACCAGAGACG+TGG + Chr3:74954826-74954845 None:intergenic 45.0%
ATTACCCCTAATTCATCGGG+AGG - Chr3:74953057-74953076 MsG0380015780.01.T01:intron 45.0%
ATTGGGAGATCCTCATCACT+GGG + Chr3:74954609-74954628 None:intergenic 45.0%
ATTTCTTGGCTGTGGTACTG+AGG - Chr3:74955696-74955715 MsG0380015780.01.T01:intron 45.0%
ATTTGGGAGCCACCATATTC+CGG + Chr3:74956057-74956076 None:intergenic 45.0%
CATCCGCCGATATCATTTGT+TGG - Chr3:74954688-74954707 MsG0380015780.01.T01:intron 45.0%
CCACCTTTGCTGAATTAAGC+TGG + Chr3:74955954-74955973 None:intergenic 45.0%
CCAGCTTAATTCAGCAAAGG+TGG - Chr3:74955951-74955970 MsG0380015780.01.T01:intron 45.0%
CCATCAGGAAGAGAAGCAAA+TGG - Chr3:74955831-74955850 MsG0380015780.01.T01:intron 45.0%
CCATTTGCTTCTCTTCCTGA+TGG + Chr3:74955834-74955853 None:intergenic 45.0%
CGATGGATCAATACGATGTG+AGG - Chr3:74954155-74954174 MsG0380015780.01.T01:intron 45.0%
CGTTTAAAAAGAGGTGGAGC+AGG - Chr3:74953404-74953423 MsG0380015780.01.T01:intron 45.0%
CTCGTCTAACCCGCTAAAAA+CGG + Chr3:74953834-74953853 None:intergenic 45.0%
CTGACCACAGATGCTATGAT+TGG - Chr3:74954851-74954870 MsG0380015780.01.T01:intron 45.0%
CTTCAACTCGTCCAACTTGT+CGG + Chr3:74952067-74952086 None:intergenic 45.0%
GACGGATCAATTCGAGATGT+AGG - Chr3:74953426-74953445 MsG0380015780.01.T01:intron 45.0%
GATTGTGAGCTACTAGGCTT+AGG + Chr3:74954288-74954307 None:intergenic 45.0%
GTCTGAAGATGCACAAGATC+CGG - Chr3:74951981-74952000 MsG0380015780.01.T01:three_prime_UTR 45.0%
TAAAAAGAGGTGGAGCAGGA+CGG - Chr3:74953408-74953427 MsG0380015780.01.T01:intron 45.0%
TAAGCTGGGAAGTCTTCTCT+GGG + Chr3:74955939-74955958 None:intergenic 45.0%
TATTGGGAGATCCTCATCAC+TGG + Chr3:74954610-74954629 None:intergenic 45.0%
TCGTCTAACCCGCTAAAAAC+GGG + Chr3:74953833-74953852 None:intergenic 45.0%
TGGGCATTCTGCATGATTGA+CGG - Chr3:74956232-74956251 MsG0380015780.01.T01:intron 45.0%
TGGTCCAATCATAGCATCTG+TGG + Chr3:74954858-74954877 None:intergenic 45.0%
TGTAAACCTCACCGACAAGT+TGG - Chr3:74952053-74952072 MsG0380015780.01.T01:three_prime_UTR 45.0%
TTAAGCTGGGAAGTCTTCTC+TGG + Chr3:74955940-74955959 None:intergenic 45.0%
! ATTTGAAACGGGTCTCCTGA+GGG - Chr3:74954749-74954768 MsG0380015780.01.T01:intron 45.0%
! TCAGCTGTAGGGTTTTGCTA+GGG - Chr3:74954429-74954448 MsG0380015780.01.T01:intron 45.0%
! TTCAGCTGTAGGGTTTTGCT+AGG - Chr3:74954428-74954447 MsG0380015780.01.T01:intron 45.0%
!! TAACAAAAATTAAATTATTT+AGG + Chr3:74955340-74955359 None:intergenic 5.0%
!!! AATAATTTAATTTTTGTTAT+TGG - Chr3:74955341-74955360 MsG0380015780.01.T01:intron 5.0%
!!! ATAATTTAATTTTTGTTATT+GGG - Chr3:74955342-74955361 MsG0380015780.01.T01:intron 5.0%
!!! TATGTAATTTTATAAATTTA+TGG - Chr3:74952146-74952165 MsG0380015780.01.T01:exon 5.0%
AACGTGCGCAAGGGCAAAAT+TGG - Chr3:74952626-74952645 MsG0380015780.01.T01:intron 50.0%
CTAACCCGCTAAAAACGGGA+TGG + Chr3:74953829-74953848 None:intergenic 50.0%
CTGGGTTGCGAGACAAATCT+GGG - Chr3:74955986-74956005 MsG0380015780.01.T01:intron 50.0%
GCAAAATTGGCATGGCTGCA+GGG - Chr3:74952639-74952658 MsG0380015780.01.T01:intron 50.0%
GCGTTAGTTAACGTGCGCAA+GGG - Chr3:74952617-74952636 MsG0380015780.01.T01:intron 50.0%
GTCCGCCATGAAATAGGGTA+GGG + Chr3:74953465-74953484 None:intergenic 50.0%
TCATTGCAGAGCTGTGTGTG+AGG - Chr3:74955256-74955275 MsG0380015780.01.T01:intron 50.0%
TCCTACTTTCTCAAACGGCG+TGG + Chr3:74952710-74952729 None:intergenic 50.0%
TCTCTTCCTGATGGAGCTGT+AGG + Chr3:74955825-74955844 None:intergenic 50.0%
TGCGTTAGTTAACGTGCGCA+AGG - Chr3:74952616-74952635 MsG0380015780.01.T01:intron 50.0%
TGTCCGCCATGAAATAGGGT+AGG + Chr3:74953466-74953485 None:intergenic 50.0%
TTCTACGAGGATGCGGTTGA+AGG + Chr3:74955875-74955894 None:intergenic 50.0%
! CGACAAGTTGGACGAGTTGA+AGG - Chr3:74952065-74952084 MsG0380015780.01.T01:three_prime_UTR 50.0%
! CTTCTCTGGGAGGAGAATAC+CGG + Chr3:74955926-74955945 None:intergenic 50.0%
! GATTTGAAACGGGTCTCCTG+AGG - Chr3:74954748-74954767 MsG0380015780.01.T01:intron 50.0%
!! TACCCTATTTCATGGCGGAC+AGG - Chr3:74953465-74953484 MsG0380015780.01.T01:intron 50.0%
!!! CGTTTTTAGCGGGTTAGACG+AGG - Chr3:74953832-74953851 MsG0380015780.01.T01:intron 50.0%
!!! TTTTAGCGGGTTAGACGAGG+CGG - Chr3:74953835-74953854 MsG0380015780.01.T01:intron 50.0%
ACGAGGATGCGGTTGAAGGT+TGG + Chr3:74955871-74955890 None:intergenic 55.0%
ACTCGTCCAACTTGTCGGTG+AGG + Chr3:74952062-74952081 None:intergenic 55.0%
AGCTACCAGAGACGTGGCAT+CGG + Chr3:74954820-74954839 None:intergenic 55.0%
CACGTGCTCTTGCCGGAATA+TGG - Chr3:74956042-74956061 MsG0380015780.01.T01:intron 55.0%
CCAGATTTGTCTCGCAACCC+AGG + Chr3:74955988-74956007 None:intergenic 55.0%
CCTGGGTTGCGAGACAAATC+TGG - Chr3:74955985-74956004 MsG0380015780.01.T01:intron 55.0%
CGCCCTACCCTATTTCATGG+CGG - Chr3:74953460-74953479 MsG0380015780.01.T01:intron 55.0%
CGCCTGTCCGCCATGAAATA+GGG + Chr3:74953470-74953489 None:intergenic 55.0%
GCCACGCCGTTTGAGAAAGT+AGG - Chr3:74952706-74952725 MsG0380015780.01.T01:intron 55.0%
GCGCAAGGGCAAAATTGGCA+TGG - Chr3:74952631-74952650 MsG0380015780.01.T01:intron 55.0%
GCTCGCCCTACCCTATTTCA+TGG - Chr3:74953457-74953476 MsG0380015780.01.T01:intron 55.0%
GGCAAAATTGGCATGGCTGC+AGG - Chr3:74952638-74952657 MsG0380015780.01.T01:intron 55.0%
GTGCTCTTGCCGGAATATGG+TGG - Chr3:74956045-74956064 MsG0380015780.01.T01:intron 55.0%
TAAAAACGGGATGGTGCGCG+AGG + Chr3:74953820-74953839 None:intergenic 55.0%
! ATCGCACAAATCGGCTCTGC+AGG + Chr3:74955500-74955519 None:intergenic 55.0%
! CATATTCCGGCAAGAGCACG+TGG + Chr3:74956044-74956063 None:intergenic 55.0%
! GTGGTACTGAGGCTTCGCAT+TGG - Chr3:74955707-74955726 MsG0380015780.01.T01:intron 55.0%
!! CCTATTTCATGGCGGACAGG+CGG - Chr3:74953468-74953487 MsG0380015780.01.T01:intron 55.0%
!! CTATTTCATGGCGGACAGGC+GGG - Chr3:74953469-74953488 MsG0380015780.01.T01:intron 55.0%
!! GCGCACCATCCCGTTTTTAG+CGG - Chr3:74953821-74953840 MsG0380015780.01.T01:intron 55.0%
!! TATTTCATGGCGGACAGGCG+GGG - Chr3:74953470-74953489 MsG0380015780.01.T01:intron 55.0%
!!! CGCACCATCCCGTTTTTAGC+GGG - Chr3:74953822-74953841 MsG0380015780.01.T01:intron 55.0%
AGGGTGCGAGCAAAACGTGC+TGG - Chr3:74952658-74952677 MsG0380015780.01.T01:intron 60.0%
AGGTGACCACGTGCTCTTGC+CGG - Chr3:74956035-74956054 MsG0380015780.01.T01:intron 60.0%
ATACCGGCGGAGGTCTTGGA+AGG + Chr3:74955910-74955929 None:intergenic 60.0%
CCGCCTGTCCGCCATGAAAT+AGG + Chr3:74953471-74953490 None:intergenic 60.0%
GAGAATACCGGCGGAGGTCT+TGG + Chr3:74955914-74955933 None:intergenic 60.0%
GATGGAGCTGTAGGCGTCCA+AGG + Chr3:74955816-74955835 None:intergenic 60.0%
GCTGGGAAGTCTTCTCTGGG+AGG + Chr3:74955936-74955955 None:intergenic 60.0%
GGGTGCGAGCAAAACGTGCT+GGG - Chr3:74952659-74952678 MsG0380015780.01.T01:intron 60.0%
TCGTGTCTGCAGCTGCACAG+CGG - Chr3:74954351-74954370 MsG0380015780.01.T01:intron 60.0%
TGCGAGCAAAACGTGCTGGG+TGG - Chr3:74952662-74952681 MsG0380015780.01.T01:intron 60.0%
TGGACGCCTACAGCTCCATC+AGG - Chr3:74955816-74955835 MsG0380015780.01.T01:intron 60.0%
TTGGTCCGATGCCACGTCTC+TGG - Chr3:74954812-74954831 MsG0380015780.01.T01:intron 60.0%
! CTCTGGGAGGAGAATACCGG+CGG + Chr3:74955923-74955942 None:intergenic 60.0%
AAACGGGATGGTGCGCGAGG+TGG + Chr3:74953817-74953836 None:intergenic 65.0%
AACGGGATGGTGCGCGAGGT+GGG + Chr3:74953816-74953835 None:intergenic 65.0%
CCTCCTTCCAAGACCTCCGC+CGG - Chr3:74955904-74955923 MsG0380015780.01.T01:intron 65.0%
CGGCGGAGGTCTTGGAAGGA+GGG + Chr3:74955906-74955925 None:intergenic 65.0%
TGGGAGGAGAATACCGGCGG+AGG + Chr3:74955920-74955939 None:intergenic 65.0%
CCGGCGGAGGTCTTGGAAGG+AGG + Chr3:74955907-74955926 None:intergenic 70.0%
GGATGGTGCGCGAGGTGGGT+TGG + Chr3:74953812-74953831 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74951979 74956429 74951979 ID=MsG0380015780.01;Name=MsG0380015780.01
Chr3 mRNA 74951979 74956429 74951979 ID=MsG0380015780.01.T01;Parent=MsG0380015780.01;Name=MsG0380015780.01.T01;_AED=0.52;_eAED=0.54;_QI=0|0.5|0.33|0.66|1|1|3|178|151
Chr3 exon 74951979 74952205 74951979 ID=MsG0380015780.01.T01:exon:971;Parent=MsG0380015780.01.T01
Chr3 exon 74952314 74952579 74952314 ID=MsG0380015780.01.T01:exon:970;Parent=MsG0380015780.01.T01
Chr3 exon 74956289 74956429 74956289 ID=MsG0380015780.01.T01:exon:969;Parent=MsG0380015780.01.T01
Chr3 CDS 74956289 74956429 74956289 ID=MsG0380015780.01.T01:cds;Parent=MsG0380015780.01.T01
Chr3 CDS 74952314 74952579 74952314 ID=MsG0380015780.01.T01:cds;Parent=MsG0380015780.01.T01
Chr3 CDS 74952157 74952205 74952157 ID=MsG0380015780.01.T01:cds;Parent=MsG0380015780.01.T01
Chr3 three_prime_UTR 74951979 74952156 74951979 ID=MsG0380015780.01.T01:three_prime_utr;Parent=MsG0380015780.01.T01
Gene Sequence

>MsG0380015780.01.T01

ATGTCTGAAGATGCACAAGATCCGGTTAAACTTGAAGTCCGTTATGTAGATGTGAAAAAGAAGGCTTGGTTCACTGTAAACCTCACCGACAAGTTGGACGAGTTGAAGGCAAAGCTTGACGACTTCTTTAAGTGTAATAGTCTCCATCAGGAAGAGAAGCAAATGGCTAAGCGTTTGATTCCAACCTTCAACCGCATCCTCGTAGAAAAAATTGTCCCTCCTTCCAAGACCTCCGCCGGTATTCTCCTCCCAGAGAAGACTTCCCAGCTTAATTCAGCAAAGGTGGTAGCTGTTGGTCCTGGGTTGCGAGACAAATCTGGGAATTTGATTCCATTGTCTGTCAAAGAAGGTGACCACGTGCTCTTGCCGGAATATGGTGGCTCCCAAATTAAGCTTGATGACAAAGAGTTCCATTTGTTTAGGGATGAGGACATTTTGGGCATTCTGCATGATTGA
Protein sequence

>MsG0380015780.01.T01

MSEDAQDPVKLEVRYVDVKKKAWFTVNLTDKLDELKAKLDDFFKCNSLHQEEKQMAKRLIPTFNRILVEKIVPPSKTSAGILLPEKTSQLNSAKVVAVGPGLRDKSGNLIPLSVKEGDHVLLPEYGGSQIKLDDKEFHLFRDEDILGILHD*