AlfalfaGEDB | MsG0380015948.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015948.01

KEGG: -
GO: GO:0016020 GO:0016021
PFAM: PF00892

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015948.01.T01	XP_013461105.1	87.582	459	5	3	1	458	1	408	0	789

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000738.01	MsG0380015948.01	0.802089	6.619474e-49	3.213841e-46
MsG0280007199.01	MsG0380015948.01	0.802049	6.746021e-49	3.271956e-46
MsG0380015948.01	MsG0480022833.01	0.818753	1.663150e-52	1.255781e-49
MsG0380015948.01	MsG0580026529.01	0.809071	2.267581e-50	1.318392e-47
MsG0380015948.01	MsG0880047057.01	0.800022	1.751256e-48	8.068580e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015948.01.T01	MTR_3g080260	87.582	459	5	3	1	458	1	408	0.0	789
MsG0380015948.01.T01	MTR_3g080260	87.582	459	5	3	1	458	95	502	0.0	786

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015948.01.T01	AT2G05755	49.339	454	166	9	9	458	4	397	1.43e-133	391

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Find 88 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACGTCAGATTGAAGG+AGG	0.612963	3:-77029948	None:intergenic
AACACAACAGCCTGAACAAA+AGG	0.448163	3:-77032795	None:intergenic
AACATTATCACGAGAGTCAT+CGG	0.527965	3:-77030119	None:intergenic
AACGACGTCAGATTGAAGGA+GGG	0.680033	3:-77029947	None:intergenic
AACGAGGTGATCGAAAGCTG+GGG	0.700038	3:-77037048	None:intergenic
AACTAGTTACTGTCTTATAA+AGG	0.483748	3:+77033948	MsG0380015948.01.T01:CDS
AAGTAAAATGATTCTAACAT+TGG	0.493160	3:-77031827	None:intergenic
AAGTACATATTCCCATTGCA+GGG	0.628314	3:-77034461	None:intergenic
AATATGTACTTATGTCTTTG+AGG	0.461326	3:+77034473	MsG0380015948.01.T01:CDS
ACATTGATATACAACCTGCA+AGG	0.622187	3:-77031858	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTGTTTGTCTAAGTG+AGG	+	Chr3:77035636-77035655	MsG0380015948.01.T01:intron	30.0%
AAATCCTAGTAAGTGGTATT+AGG	+	Chr3:77035579-77035598	MsG0380015948.01.T01:intron	30.0%
AACAAAACCAAAGCATAAAC+CGG	-	Chr3:77034065-77034084	None:intergenic	30.0%
AAGAAAAGCTCAGAATTATG+TGG	-	Chr3:77034241-77034260	None:intergenic	30.0%
AATGAAAGATTTCATACTCG+GGG	-	Chr3:77030229-77030248	None:intergenic	30.0%
AATTCAAGCTGAGTTGTAAA+AGG	+	Chr3:77030703-77030722	MsG0380015948.01.T01:intron	30.0%
ACAAAGTAAAGTCAAATAGC+TGG	+	Chr3:77031301-77031320	MsG0380015948.01.T01:intron	30.0%
ACATGTAGGAAAATGTTGTA+AGG	+	Chr3:77036560-77036579	MsG0380015948.01.T01:intron	30.0%
ACTAGAATCCTAAACAAACT+AGG	+	Chr3:77033312-77033331	MsG0380015948.01.T01:intron	30.0%
AGAAGATGAGTTAGATTTAG+TGG	+	Chr3:77035685-77035704	MsG0380015948.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	77029887	77037139	77029887	ID=MsG0380015948.01;Name=MsG0380015948.01
Chr3	mRNA	77029887	77037139	77029887	ID=MsG0380015948.01.T01;Parent=MsG0380015948.01;Name=MsG0380015948.01.T01;_AED=0.45;_eAED=0.46;_QI=117\|0.77\|0.7\|1\|0.44\|0.4\|10\|0\|458
Chr3	exon	77029887	77030231	77029887	ID=MsG0380015948.01.T01:exon:24993;Parent=MsG0380015948.01.T01
Chr3	exon	77030794	77030947	77030794	ID=MsG0380015948.01.T01:exon:24994;Parent=MsG0380015948.01.T01
Chr3	exon	77031620	77031896	77031620	ID=MsG0380015948.01.T01:exon:24995;Parent=MsG0380015948.01.T01
Chr3	exon	77032782	77032897	77032782	ID=MsG0380015948.01.T01:exon:24996;Parent=MsG0380015948.01.T01
Chr3	exon	77033542	77033601	77033542	ID=MsG0380015948.01.T01:exon:24997;Parent=MsG0380015948.01.T01
Chr3	exon	77033848	77033998	77033848	ID=MsG0380015948.01.T01:exon:24998;Parent=MsG0380015948.01.T01
Chr3	exon	77034428	77034494	77034428	ID=MsG0380015948.01.T01:exon:24999;Parent=MsG0380015948.01.T01
Chr3	exon	77036064	77036135	77036064	ID=MsG0380015948.01.T01:exon:25000;Parent=MsG0380015948.01.T01
Chr3	exon	77036271	77036347	77036271	ID=MsG0380015948.01.T01:exon:25001;Parent=MsG0380015948.01.T01
Chr3	exon	77036965	77037139	77036965	ID=MsG0380015948.01.T01:exon:25002;Parent=MsG0380015948.01.T01
Chr3	five_prime_UTR	77029887	77030003	77029887	ID=MsG0380015948.01.T01:five_prime_utr;Parent=MsG0380015948.01.T01
Chr3	CDS	77030004	77030231	77030004	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77030794	77030947	77030794	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77031620	77031896	77031620	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77032782	77032897	77032782	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77033542	77033601	77033542	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77033848	77033998	77033848	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77034428	77034494	77034428	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77036064	77036135	77036064	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77036271	77036347	77036271	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3	CDS	77036965	77037139	77036965	ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01

Gene Sequence

>MsG0380015948.01.T01

ATGCATGCTCCAAAATCAACCATGGCGTCTCCCGAATCCAACGGTTCAGATCACGTCGTCGAGCTCATTGTTCGTGACATACCACAACCACCACCACTTCCATCTTCTTCTTCTTCCGATGACTCTCGTGATAATGTTCATGACCAAATTGCCCCTCTTCTTTCCCATACTGATAGACCTAAGATCAATATCTTCACCGCTTCTTATCCCAGAAGAAAACAACCCCGAGATGAAGTAACAAGACTACTTGAGTCTGAGACATCTCCATTCACTCAATGTATATTGTGGATATGGAACGGTTCTAGATACTCTGGTTTACTATGCATGGCTTTGTCATCTTTCCTTTACTTTTTTATGGGAGTTCTTTCCAATATTTTTTCTGATTTTTTTTTCTTCTCAAGATCTACAATTATCTTTTTTGCTTGTATTTTTTTTTTTTTGGGCGCTCCTTTTAATTTTTGCAATAACATTTTTGACTTGGCAGTTCAGGCAATTCCTTTGTTTGAGACTGCTTTTACAAGATGTACAATTATCTTGATACTGTCATATTTGTGGTTAAGAAGGAGTGAACAACCACTGTTTGGAACATCCAATGTTAGAATCATTTTACTTTTAAGAGCCCTTGCAGGTTGTATATCAATGTCAAGTTTTGTATATTGCTTTCAGAAGTTGCCTTTTGTTCAGGCTGTTGTGTTGAATTCAACGACTCCAATCATGGCTTCAGTAATGGCACGGTTCTTTTTGCGTGAGAAATTGAAAATTGCGGATATAGCAAGTCTTGCTTGTAGTTTCTTCGGCGTGCTCTTTTTCTTCCGAGAAATGCTTGCTACACAAGGACAGTTAGACAAAGTTGATGAAGCAAGCAATGCAAATGCTAAGCCAAGTCATCATATATTTGCAATCCTAGTGGGCATATTTTCATCAATAATTGGTGGAACTAGTTACTGTCTTATAAAGGCTGGAGCTAAAGCATCTGACCAGCCACTGTTGACTGTCTTTTCATTTGGCATACTGGCTAGCCCTGCAATGGGAATATGTACTTATGTCTTTGAGGATTTTGTTCTACCAACAGTTCAGTCAATTTTACTTATGGTTGTACTTGGTATTCTAGCCTTCTTTGCTGAGGTCTTGTTAGCACGAGGACTACAACTTGAGAGGATGGGTAAAGTTGCCAACATCCAGTACATGGAGGTATCATCACTTCTAGGGACTGATATAAAGCTATATATTTCTATTTTTCAGGCAGCACTAACCCAATTTTGGAGCCTTACTTTGACATTAGTGTCCCCAGCTTTCGATCACCTCGTTGGAATTTTACTTATTGTTGTTTCTGTATGTTGTACCATGTACATAGGACCTGACAAGGAGATGGAATGA

Protein sequence

>MsG0380015948.01.T01

MHAPKSTMASPESNGSDHVVELIVRDIPQPPPLPSSSSSDDSRDNVHDQIAPLLSHTDRPKINIFTASYPRRKQPRDEVTRLLESETSPFTQCILWIWNGSRYSGLLCMALSSFLYFFMGVLSNIFSDFFFFSRSTIIFFACIFFFLGAPFNFCNNIFDLAVQAIPLFETAFTRCTIILILSYLWLRRSEQPLFGTSNVRIILLLRALAGCISMSSFVYCFQKLPFVQAVVLNSTTPIMASVMARFFLREKLKIADIASLACSFFGVLFFFREMLATQGQLDKVDEASNANAKPSHHIFAILVGIFSSIIGGTSYCLIKAGAKASDQPLLTVFSFGILASPAMGICTYVFEDFVLPTVQSILLMVVLGILAFFAEVLLARGLQLERMGKVANIQYMEVSSLLGTDIKLYISIFQAALTQFWSLTLTLVSPAFDHLVGILLIVVSVCCTMYIGPDKEME*