AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015948.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015948.01.T01 MTR_3g080260 87.582 459 5 3 1 458 1 408 0.0 789
MsG0380015948.01.T01 MTR_3g080260 87.582 459 5 3 1 458 95 502 0.0 786
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015948.01.T01 AT2G05755 49.339 454 166 9 9 458 4 397 1.43e-133 391

Find 88 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAGCACTAACCCAATTT+TGG 0.199909 3:+77037003 MsG0380015948.01.T01:CDS
TCAAAGTAAGGCTCCAAAAT+TGG 0.200660 3:-77037016 None:intergenic
GGAGACGCCATGGTTGATTT+TGG 0.236198 3:-77030013 None:intergenic
CTCAATGTATATTGTGGATA+TGG 0.267402 3:+77030837 MsG0380015948.01.T01:CDS
GTGATCTGAACCGTTGGATT+CGG 0.324139 3:-77030035 None:intergenic
TGATCTGAACCGTTGGATTC+GGG 0.324631 3:-77030034 None:intergenic
GCATGCATTTCATTCAGATT+TGG 0.329837 3:-77029989 None:intergenic
TGATCTTAGGTCTATCAGTA+TGG 0.344476 3:-77030168 None:intergenic
TCTTGATACTGTCATATTTG+TGG 0.387658 3:+77031770 MsG0380015948.01.T01:CDS
TAAGTACATATTCCCATTGC+AGG 0.410105 3:-77034462 None:intergenic
GGGAAAGAAGAGGGGCAATT+TGG 0.410664 3:-77030147 None:intergenic
GGTCTTGCTTGTAGTTTCTT+CGG 0.415583 3:+77033541 MsG0380015948.01.T01:intron
CTTGTGTAGCAAGCATTTCT+CGG 0.416716 3:-77033579 None:intergenic
TATCATTCCATCTCCTTGTC+AGG 0.417505 3:-77037119 None:intergenic
CAAAGTAAGGCTCCAAAATT+GGG 0.424977 3:-77037015 None:intergenic
AGGAGTGAACAACCACTGTT+TGG 0.429332 3:+77031799 MsG0380015948.01.T01:CDS
CACAATATACATTGAGTGAA+TGG 0.442722 3:-77030830 None:intergenic
GCCATTACTGAAGCCATGAT+TGG 0.447811 3:-77032831 None:intergenic
AACACAACAGCCTGAACAAA+AGG 0.448163 3:-77032795 None:intergenic
TGTCATATTTGTGGTTAAGA+AGG 0.451374 3:+77031779 MsG0380015948.01.T01:CDS
GAATTCAACGACTCCAATCA+TGG 0.455292 3:+77032818 MsG0380015948.01.T01:CDS
TGATGATGACAGACAAAGAA+AGG 0.456250 3:-77029918 None:intergenic
AATATGTACTTATGTCTTTG+AGG 0.461326 3:+77034473 MsG0380015948.01.T01:CDS
GAGAGAAAGATGAGAGAAAG+AGG 0.468375 3:-77029885 None:intergenic
GATGGAAGTGGTGGTGGTTG+TGG 0.472982 3:-77030085 None:intergenic
GCGGTGAAGATATTGATCTT+AGG 0.476755 3:-77030181 None:intergenic
CCAACGAGGTGATCGAAAGC+TGG 0.480405 3:-77037050 None:intergenic
ATGAAACGACGTCAGATTGA+AGG 0.482271 3:-77029951 None:intergenic
AACTAGTTACTGTCTTATAA+AGG 0.483748 3:+77033948 MsG0380015948.01.T01:CDS
GTAAAAGCAGTCTCAAACAA+AGG 0.487035 3:-77031733 None:intergenic
GAAGAAGATGGAAGTGGTGG+TGG 0.490990 3:-77030091 None:intergenic
AAGTAAAATGATTCTAACAT+TGG 0.493160 3:-77031827 None:intergenic
AGTAAAATTGACTGAACTGT+TGG 0.499024 3:-77036076 None:intergenic
CTTGTCAGGTCCTATGTACA+TGG 0.503026 3:-77037105 None:intergenic
AGTTACTGTCTTATAAAGGC+TGG 0.509263 3:+77033952 MsG0380015948.01.T01:CDS
CTGTGTAATCTTACAGTGGC+TGG 0.512651 3:-77033990 None:intergenic
TCCAATCATGGCTTCAGTAA+TGG 0.515462 3:+77032830 MsG0380015948.01.T01:CDS
GAGTTGCACCTCAGCAAAGA+AGG 0.516490 3:-77036122 None:intergenic
ATACTCTGGTTTACTATGCA+TGG 0.520293 3:+77030871 MsG0380015948.01.T01:CDS
CAACGAGGTGATCGAAAGCT+GGG 0.523398 3:-77037049 None:intergenic
AACATTATCACGAGAGTCAT+CGG 0.527965 3:-77030119 None:intergenic
CATTCACTCAATGTATATTG+TGG 0.531087 3:+77030831 MsG0380015948.01.T01:CDS
CATACTGGCTAGCCCTGCAA+TGG 0.534353 3:+77034449 MsG0380015948.01.T01:CDS
AGGACTACAACTTGAGAGGA+TGG 0.537836 3:+77036285 MsG0380015948.01.T01:CDS
CCAGCTTTCGATCACCTCGT+TGG 0.539340 3:+77037050 MsG0380015948.01.T01:CDS
TCATCGGAAGAAGAAGAAGA+TGG 0.542029 3:-77030103 None:intergenic
GGGACACTAATGTCAAAGTA+AGG 0.548142 3:-77037028 None:intergenic
GTGATGATACCTCCATGTAC+TGG 0.555513 3:-77036324 None:intergenic
GAAGAAGAAGAAGATGGAAG+TGG 0.556256 3:-77030097 None:intergenic
AGTTGCCAACATCCAGTACA+TGG 0.560300 3:+77036312 MsG0380015948.01.T01:CDS
TGGAACGGTTCTAGATACTC+TGG 0.560442 3:+77030857 MsG0380015948.01.T01:CDS
GACGACGTGATCTGAACCGT+TGG 0.560497 3:-77030041 None:intergenic
ATACTGGCTAGCCCTGCAAT+GGG 0.567757 3:+77034450 MsG0380015948.01.T01:CDS
GATCTTAGGTCTATCAGTAT+GGG 0.568597 3:-77030167 None:intergenic
TATTCTAGCCTTCTTTGCTG+AGG 0.573974 3:+77036114 MsG0380015948.01.T01:CDS
ATTGCAAATATATGATGACT+TGG 0.575308 3:-77033892 None:intergenic
GCGTGAGAAATTGAAAATTG+CGG 0.576032 3:+77032866 MsG0380015948.01.T01:CDS
CATATATTTGCAATCCTAGT+GGG 0.578076 3:+77033901 MsG0380015948.01.T01:CDS
GATGATGACAGACAAAGAAA+GGG 0.582661 3:-77029917 None:intergenic
TATCAGTATGGGAAAGAAGA+GGG 0.585250 3:-77030156 None:intergenic
GTATGTTGTACCATGTACAT+AGG 0.585836 3:+77037095 MsG0380015948.01.T01:CDS
GAAGAAGAAGATGGAAGTGG+TGG 0.586609 3:-77030094 None:intergenic
CATAGGACCTGACAAGGAGA+TGG 0.587240 3:+77037112 MsG0380015948.01.T01:CDS
GTTGGATTCGGGAGACGCCA+TGG 0.588415 3:-77030023 None:intergenic
CGAGAAATGCTTGCTACACA+AGG 0.590900 3:+77033580 MsG0380015948.01.T01:CDS
TTGATGAAAATATGCCCACT+AGG 0.596900 3:-77033915 None:intergenic
CACGAGGACTACAACTTGAG+AGG 0.609831 3:+77036281 MsG0380015948.01.T01:CDS
AAACGACGTCAGATTGAAGG+AGG 0.612963 3:-77029948 None:intergenic
CATTGATATACAACCTGCAA+GGG 0.614400 3:-77031857 None:intergenic
CTATCAGTATGGGAAAGAAG+AGG 0.616783 3:-77030157 None:intergenic
TACCTCCATGTACTGGATGT+TGG 0.619830 3:-77036317 None:intergenic
CAGATTTGGAAAAGTCGTAA+CGG 0.620855 3:-77029975 None:intergenic
ACATTGATATACAACCTGCA+AGG 0.622187 3:-77031858 None:intergenic
TCATATATTTGCAATCCTAG+TGG 0.622275 3:+77033900 MsG0380015948.01.T01:CDS
TGTATATTGTGGATATGGAA+CGG 0.627868 3:+77030842 MsG0380015948.01.T01:CDS
AAGTACATATTCCCATTGCA+GGG 0.628314 3:-77034461 None:intergenic
GGACTACAACTTGAGAGGAT+GGG 0.630136 3:+77036286 MsG0380015948.01.T01:CDS
CATGTACATAGGACCTGACA+AGG 0.644113 3:+77037106 MsG0380015948.01.T01:CDS
TCATGGCTTCAGTAATGGCA+CGG 0.644341 3:+77032835 MsG0380015948.01.T01:CDS
ACATTGGATGTTCCAAACAG+TGG 0.646269 3:-77031811 None:intergenic
ATGGCGTCTCCCGAATCCAA+CGG 0.649538 3:+77030025 MsG0380015948.01.T01:CDS
ATCAGTATGGGAAAGAAGAG+GGG 0.650436 3:-77030155 None:intergenic
GCATGCTCCAAAATCAACCA+TGG 0.654403 3:+77030006 MsG0380015948.01.T01:CDS
AACGACGTCAGATTGAAGGA+GGG 0.680033 3:-77029947 None:intergenic
ATACAGGTCTTGTTAGCACG+AGG 0.688361 3:+77036265 MsG0380015948.01.T01:intron
AACGAGGTGATCGAAAGCTG+GGG 0.700038 3:-77037048 None:intergenic
TGCCAACATCCAGTACATGG+AGG 0.760914 3:+77036315 MsG0380015948.01.T01:CDS
CAATAAGTAAAATTCCAACG+AGG 0.791330 3:-77037064 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATTTATACAAAACTAT+GGG + Chr3:77034693-77034712 MsG0380015948.01.T01:intron 10.0%
!! TAAATATTTATACAAAACTA+TGG + Chr3:77034692-77034711 MsG0380015948.01.T01:intron 10.0%
!!! ATGTTTTATGTTTTTATTTT+TGG + Chr3:77031103-77031122 MsG0380015948.01.T01:intron 10.0%
!!! TGTTTTATGTTTTTATTTTT+GGG + Chr3:77031104-77031123 MsG0380015948.01.T01:intron 10.0%
!!! TTTTTTTTTCTTTATGTATT+TGG + Chr3:77030765-77030784 MsG0380015948.01.T01:intron 10.0%
!! AACTACATTAAGAAAAAAAT+TGG - Chr3:77035191-77035210 None:intergenic 15.0%
!! ATGTTATTGCAAAAATTAAA+AGG - Chr3:77031688-77031707 None:intergenic 15.0%
!! TATAAATATTCAAGAATTGT+TGG + Chr3:77036512-77036531 MsG0380015948.01.T01:intron 15.0%
!! TTTCAAAAATAAATAGAGAA+GGG - Chr3:77031999-77032018 None:intergenic 15.0%
!!! AATTTTTTTCTTAATGTAGT+TGG + Chr3:77035190-77035209 MsG0380015948.01.T01:intron 15.0%
!!! ATAAATTCTAAAACAAAAAG+AGG - Chr3:77034165-77034184 None:intergenic 15.0%
!!! ATGCATGATATTTTTTTTTT+TGG + Chr3:77035899-77035918 MsG0380015948.01.T01:intron 15.0%
!!! ATTGGAATATGATATAATTT+TGG - Chr3:77035173-77035192 None:intergenic 15.0%
!!! ATTTCTTTTATAACAATAGT+TGG - Chr3:77032748-77032767 None:intergenic 15.0%
!!! GCTTGTATTTTTTTTTTTTT+GGG + Chr3:77031658-77031677 MsG0380015948.01.T01:CDS 15.0%
!!! TAAATTCTAAAACAAAAAGA+GGG - Chr3:77034164-77034183 None:intergenic 15.0%
!!! TAATTTTTATAGATATGACA+TGG - Chr3:77036008-77036027 None:intergenic 15.0%
!!! TGCTTGTATTTTTTTTTTTT+TGG + Chr3:77031657-77031676 MsG0380015948.01.T01:CDS 15.0%
!!! TTATGAATAATATTTTCTTG+AGG + Chr3:77034860-77034879 MsG0380015948.01.T01:intron 15.0%
!!! TTTCTTTTATAACAATAGTT+GGG - Chr3:77032747-77032766 None:intergenic 15.0%
!!! TTTTCAAATATCATAGTTTT+AGG + Chr3:77032021-77032040 MsG0380015948.01.T01:intron 15.0%
!! AAACACACTTTAATATATGA+TGG + Chr3:77036219-77036238 MsG0380015948.01.T01:intron 20.0%
!! AAATTAAACCATTAGATTGA+GGG - Chr3:77031438-77031457 None:intergenic 20.0%
!! AACATTACCAGAAAAAATAT+TGG - Chr3:77030936-77030955 None:intergenic 20.0%
!! AAGAAATAATACACTAGAAA+AGG - Chr3:77036917-77036936 None:intergenic 20.0%
!! AAGTAAAATGATTCTAACAT+TGG - Chr3:77031830-77031849 None:intergenic 20.0%
!! AGTTCTTATATGTCAAATAT+TGG + Chr3:77031193-77031212 MsG0380015948.01.T01:intron 20.0%
!! ATAATATGAATTGATCTGAT+CGG + Chr3:77036818-77036837 MsG0380015948.01.T01:intron 20.0%
!! ATTATACATCAATCTTATAC+AGG + Chr3:77036249-77036268 MsG0380015948.01.T01:intron 20.0%
!! CTAAAATGGAAAAAAATTTG+TGG - Chr3:77034352-77034371 None:intergenic 20.0%
!! CTTTCAAAAATAAATAGAGA+AGG - Chr3:77032000-77032019 None:intergenic 20.0%
!! GTAAAACAAAAGATCTTAAA+TGG - Chr3:77033118-77033137 None:intergenic 20.0%
!! TAAAAGAAAAATTGTCAACA+TGG - Chr3:77032586-77032605 None:intergenic 20.0%
!! TCATTGTACATTAAGTATAA+TGG + Chr3:77031578-77031597 MsG0380015948.01.T01:intron 20.0%
!! TCTAAAGGTGAAAAATAAAT+TGG - Chr3:77034945-77034964 None:intergenic 20.0%
!! TCTTGAGATATTATAAATCA+AGG - Chr3:77036651-77036670 None:intergenic 20.0%
!! TGAAAACAAAGAAAAAACTT+TGG + Chr3:77031022-77031041 MsG0380015948.01.T01:intron 20.0%
!! TTGAAAAAAAGAAGAAAAGA+TGG + Chr3:77032214-77032233 MsG0380015948.01.T01:intron 20.0%
!! TTTACATCTCTAAACTAAAA+TGG - Chr3:77034366-77034385 None:intergenic 20.0%
!!! AACCATTCATAATATTTTTG+AGG - Chr3:77033171-77033190 None:intergenic 20.0%
!!! AATTTTGAGTAAATTGATTC+TGG - Chr3:77030521-77030540 None:intergenic 20.0%
!!! ATATGATATAATTTTGGCTT+TGG - Chr3:77035167-77035186 None:intergenic 20.0%
!!! ATATTTTCATCAATAATTGG+TGG + Chr3:77033925-77033944 MsG0380015948.01.T01:CDS 20.0%
!!! ATCTTTCCTTTACTTTTTTA+TGG + Chr3:77030901-77030920 MsG0380015948.01.T01:CDS 20.0%
!!! ATGGATTTTTGTTATCTTTT+TGG - Chr3:77035362-77035381 None:intergenic 20.0%
!!! CAATGTTTTAATAAACTTGT+TGG - Chr3:77035624-77035643 None:intergenic 20.0%
!!! CTTTTTTATGAAGTTTCATT+CGG + Chr3:77033033-77033052 MsG0380015948.01.T01:intron 20.0%
!!! GCTATATATTTCTATTTTTC+AGG + Chr3:77036983-77037002 MsG0380015948.01.T01:CDS 20.0%
!!! TACTTCATTTTTGTTTATAC+TGG + Chr3:77033135-77033154 MsG0380015948.01.T01:intron 20.0%
!!! TATGTTTTTATTTTTGGGTA+GGG + Chr3:77031109-77031128 MsG0380015948.01.T01:intron 20.0%
!!! TATTCTGGTTATTTCTATTT+TGG + Chr3:77034084-77034103 MsG0380015948.01.T01:intron 20.0%
!!! TCTTTCCTTTACTTTTTTAT+GGG + Chr3:77030902-77030921 MsG0380015948.01.T01:CDS 20.0%
!!! TTATGTTTTTATTTTTGGGT+AGG + Chr3:77031108-77031127 MsG0380015948.01.T01:intron 20.0%
!!! TTTTCTTTGTTTTCAACATA+TGG - Chr3:77031017-77031036 None:intergenic 20.0%
! AAAAAGAAGAAAAGATGGTT+TGG + Chr3:77032219-77032238 MsG0380015948.01.T01:intron 25.0%
! AAAATGTGAACAAAATGTGA+TGG + Chr3:77030740-77030759 MsG0380015948.01.T01:intron 25.0%
! AAATAAATAGAGAAGGGAAA+AGG - Chr3:77031993-77032012 None:intergenic 25.0%
! AAATGAAAGATTTCATACTC+GGG - Chr3:77030230-77030249 None:intergenic 25.0%
! AAATGAACCCATGAAAATAT+TGG - Chr3:77035778-77035797 None:intergenic 25.0%
! AAATGTCAATGGAATGAATA+GGG - Chr3:77031160-77031179 None:intergenic 25.0%
! AAATTTGTGAAAACACTAAG+CGG - Chr3:77034641-77034660 None:intergenic 25.0%
! AACTAGTTACTGTCTTATAA+AGG + Chr3:77033948-77033967 MsG0380015948.01.T01:CDS 25.0%
! AATATGTACTTATGTCTTTG+AGG + Chr3:77034473-77034492 MsG0380015948.01.T01:CDS 25.0%
! AATTAAACCATTAGATTGAG+GGG - Chr3:77031437-77031456 None:intergenic 25.0%
! AATTTGCATTATCTAGGTTT+GGG + Chr3:77033776-77033795 MsG0380015948.01.T01:intron 25.0%
! ACTATGGTATCAAAGTAAAT+GGG + Chr3:77034209-77034228 MsG0380015948.01.T01:intron 25.0%
! AGTCTATATACAAAAGCTTT+GGG + Chr3:77034586-77034605 MsG0380015948.01.T01:intron 25.0%
! ATATTTGTGTGTTTGATCAA+TGG - Chr3:77034035-77034054 None:intergenic 25.0%
! ATTGCAAATATATGATGACT+TGG - Chr3:77033895-77033914 None:intergenic 25.0%
! CAAATTAAACCATTAGATTG+AGG - Chr3:77031439-77031458 None:intergenic 25.0%
! CAACTAAAAGAAAATGAGTT+AGG - Chr3:77033616-77033635 None:intergenic 25.0%
! CACCTCAAAAATATTATGAA+TGG + Chr3:77033166-77033185 MsG0380015948.01.T01:intron 25.0%
! CATATGATTACAACTATGTT+TGG + Chr3:77030425-77030444 MsG0380015948.01.T01:intron 25.0%
! CGAATATTAAACTAGAAAGT+AGG - Chr3:77032142-77032161 None:intergenic 25.0%
! CTTTACTTTGTACTGAATAT+CGG - Chr3:77031292-77031311 None:intergenic 25.0%
! GAAATGAAAGATTTCATACT+CGG - Chr3:77030231-77030250 None:intergenic 25.0%
! GCAAAAAATGAATAACATGT+AGG + Chr3:77036546-77036565 MsG0380015948.01.T01:intron 25.0%
! GTAAGCTTACTATAAATCAA+CGG - Chr3:77033674-77033693 None:intergenic 25.0%
! TAAATGTCAATGGAATGAAT+AGG - Chr3:77031161-77031180 None:intergenic 25.0%
! TAAGCTTACTATAAATCAAC+GGG - Chr3:77033673-77033692 None:intergenic 25.0%
! TAATCTACCGTTGAAAAAAT+TGG + Chr3:77035741-77035760 MsG0380015948.01.T01:intron 25.0%
! TACTATGGTATCAAAGTAAA+TGG + Chr3:77034208-77034227 MsG0380015948.01.T01:intron 25.0%
! TACTTCTTGTACGTAAAATA+TGG - Chr3:77033437-77033456 None:intergenic 25.0%
! TAGCTCAAAACAAAATTAGA+TGG - Chr3:77031480-77031499 None:intergenic 25.0%
! TATCCTTTACAATGCTATTA+AGG + Chr3:77035976-77035995 MsG0380015948.01.T01:intron 25.0%
! TATTTGTGTGTTTGATCAAT+GGG - Chr3:77034034-77034053 None:intergenic 25.0%
! TCATTTCCACAAATAATTAC+CGG + Chr3:77030586-77030605 MsG0380015948.01.T01:intron 25.0%
! TCTAATACATAGAAACAAAG+TGG - Chr3:77036401-77036420 None:intergenic 25.0%
! TGGTAGATGATTTAATCTAA+AGG - Chr3:77034960-77034979 None:intergenic 25.0%
! TTATGTCAAATTGTGAAGTA+AGG - Chr3:77032649-77032668 None:intergenic 25.0%
! TTGAATGTAATCATTTGCAT+CGG + Chr3:77030366-77030385 MsG0380015948.01.T01:intron 25.0%
! TTTAACTAAATTTCCGAATG+TGG + Chr3:77033816-77033835 MsG0380015948.01.T01:intron 25.0%
!! AATAATATTTTCTTGAGGCT+TGG + Chr3:77034865-77034884 MsG0380015948.01.T01:intron 25.0%
!! ACAAACATTTGAAATCTTAC+AGG - Chr3:77035931-77035950 None:intergenic 25.0%
!! AGGTAATTTTGTACTTGTAA+TGG + Chr3:77034493-77034512 MsG0380015948.01.T01:intron 25.0%
!! AGTTCAGTCAATTTTACTTA+TGG + Chr3:77036081-77036100 MsG0380015948.01.T01:CDS 25.0%
!! ATCATGAACCAATATTTTCA+TGG + Chr3:77035767-77035786 MsG0380015948.01.T01:intron 25.0%
!! ATTTTACTTATGGTTGTACT+TGG + Chr3:77036091-77036110 MsG0380015948.01.T01:CDS 25.0%
!! CAAATTTGAATACTAGTCTA+GGG + Chr3:77036949-77036968 MsG0380015948.01.T01:intron 25.0%
!! CATTTTGTCATTAGCATTTT+TGG + Chr3:77036457-77036476 MsG0380015948.01.T01:intron 25.0%
!! GAAATCATGTTTCTATGATA+TGG - Chr3:77035252-77035271 None:intergenic 25.0%
!! GCATATAATTTGCATTATCT+AGG + Chr3:77033770-77033789 MsG0380015948.01.T01:intron 25.0%
!! GGCATATTTTCATCAATAAT+TGG + Chr3:77033922-77033941 MsG0380015948.01.T01:CDS 25.0%
!! TAAATTTTACCATCGTACAA+TGG + Chr3:77031498-77031517 MsG0380015948.01.T01:intron 25.0%
!! TAATGAGTTGGATCAAAATA+TGG + Chr3:77032403-77032422 MsG0380015948.01.T01:intron 25.0%
!! TAATTTGCATTATCTAGGTT+TGG + Chr3:77033775-77033794 MsG0380015948.01.T01:intron 25.0%
!! TCAAATTTGAATACTAGTCT+AGG + Chr3:77036948-77036967 MsG0380015948.01.T01:intron 25.0%
!! TCATGAACCAATATTTTCAT+GGG + Chr3:77035768-77035787 MsG0380015948.01.T01:intron 25.0%
!! TCTAGTTTAATATTCGATGA+AGG + Chr3:77032146-77032165 MsG0380015948.01.T01:intron 25.0%
!! TGGAATTATATTTTCTCTAG+TGG + Chr3:77031966-77031985 MsG0380015948.01.T01:intron 25.0%
!!! AAATTAAGTGCTGAAAAGAT+TGG - Chr3:77031939-77031958 None:intergenic 25.0%
!!! ACTTTTAAAATCCTAGTAAG+TGG + Chr3:77035572-77035591 MsG0380015948.01.T01:intron 25.0%
!!! AGCTACTTTGAATTCATTTT+AGG + Chr3:77031538-77031557 MsG0380015948.01.T01:intron 25.0%
!!! AGGATAATTTCTTTGAGTTT+TGG - Chr3:77035321-77035340 None:intergenic 25.0%
!!! AGTCTTTGAGGTTTTTTTTT+TGG + Chr3:77031903-77031922 MsG0380015948.01.T01:intron 25.0%
!!! ATCTTATTCCTAGTTTGTTT+AGG - Chr3:77033323-77033342 None:intergenic 25.0%
!!! ATGAAAATATTGGTTCATGA+TGG - Chr3:77035768-77035787 None:intergenic 25.0%
!!! CAAAGTTGATAGGTTTTATT+TGG - Chr3:77035006-77035025 None:intergenic 25.0%
!!! CAATGTCAAGTTTTGTATAT+TGG + Chr3:77031875-77031894 MsG0380015948.01.T01:CDS 25.0%
!!! GGATAATTTCTTTGAGTTTT+GGG - Chr3:77035320-77035339 None:intergenic 25.0%
!!! GGTTATTTCTATTTTGGTTA+TGG + Chr3:77034090-77034109 MsG0380015948.01.T01:intron 25.0%
!!! GTCTTTGAGGTTTTTTTTTT+GGG + Chr3:77031904-77031923 MsG0380015948.01.T01:intron 25.0%
!!! GTTCTTTCCAATATTTTTTC+TGG + Chr3:77030926-77030945 MsG0380015948.01.T01:CDS 25.0%
!!! GTTTCTCTTATAGTTTTACT+AGG - Chr3:77032366-77032385 None:intergenic 25.0%
!!! TGTTGATAGTTTTTTTCGTA+AGG + Chr3:77032071-77032090 MsG0380015948.01.T01:intron 25.0%
!!! TTATCTTCATTGTTTTTCTC+TGG + Chr3:77036182-77036201 MsG0380015948.01.T01:intron 25.0%
!!! TTCATAAAGAGTATTCTGTT+TGG - Chr3:77034847-77034866 None:intergenic 25.0%
!!! TTGCAATAACATTTTTGACT+TGG + Chr3:77031696-77031715 MsG0380015948.01.T01:CDS 25.0%
AAACATTGTTTGTCTAAGTG+AGG + Chr3:77035636-77035655 MsG0380015948.01.T01:intron 30.0%
AAATCCTAGTAAGTGGTATT+AGG + Chr3:77035579-77035598 MsG0380015948.01.T01:intron 30.0%
AACAAAACCAAAGCATAAAC+CGG - Chr3:77034065-77034084 None:intergenic 30.0%
AAGAAAAGCTCAGAATTATG+TGG - Chr3:77034241-77034260 None:intergenic 30.0%
AATGAAAGATTTCATACTCG+GGG - Chr3:77030229-77030248 None:intergenic 30.0%
AATTCAAGCTGAGTTGTAAA+AGG + Chr3:77030703-77030722 MsG0380015948.01.T01:intron 30.0%
ACAAAGTAAAGTCAAATAGC+TGG + Chr3:77031301-77031320 MsG0380015948.01.T01:intron 30.0%
ACATGTAGGAAAATGTTGTA+AGG + Chr3:77036560-77036579 MsG0380015948.01.T01:intron 30.0%
ACTAGAATCCTAAACAAACT+AGG + Chr3:77033312-77033331 MsG0380015948.01.T01:intron 30.0%
AGAAGATGAGTTAGATTTAG+TGG + Chr3:77035685-77035704 MsG0380015948.01.T01:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + Chr3:77032391-77032410 MsG0380015948.01.T01:intron 30.0%
AGATTAGACAAAAAGACATG+TGG - Chr3:77036854-77036873 None:intergenic 30.0%
AGCAATCTATTTAACAACAC+TGG - Chr3:77031256-77031275 None:intergenic 30.0%
AGTAAAATTGACTGAACTGT+TGG - Chr3:77036079-77036098 None:intergenic 30.0%
ATATTGGTAAGTAGTCTTTG+AGG + Chr3:77031891-77031910 MsG0380015948.01.T01:intron 30.0%
ATCTTAGACCAAAACTACAA+GGG - Chr3:77034919-77034938 None:intergenic 30.0%
ATCTTCCACAAATGCTATTA+AGG + Chr3:77035861-77035880 MsG0380015948.01.T01:intron 30.0%
ATGAATTTCTATTTCACTGC+AGG + Chr3:77034406-77034425 MsG0380015948.01.T01:intron 30.0%
ATTACTAGAAGCTCAAGTTA+AGG - Chr3:77036747-77036766 None:intergenic 30.0%
ATTCAAGCTGAGTTGTAAAA+GGG + Chr3:77030704-77030723 MsG0380015948.01.T01:intron 30.0%
ATTTGTGTGTTTGATCAATG+GGG - Chr3:77034033-77034052 None:intergenic 30.0%
CAATAAGTAAAATTCCAACG+AGG - Chr3:77037067-77037086 None:intergenic 30.0%
CAATCAGTTTATCTGTACTA+TGG + Chr3:77034193-77034212 MsG0380015948.01.T01:intron 30.0%
CACAATATACATTGAGTGAA+TGG - Chr3:77030833-77030852 None:intergenic 30.0%
CAGAGTAACATAAATGTCAA+TGG - Chr3:77031171-77031190 None:intergenic 30.0%
CAGATTCTTTCTCTTTCAAT+GGG + Chr3:77035059-77035078 MsG0380015948.01.T01:intron 30.0%
CAGTCTATATACAAAAGCTT+TGG + Chr3:77034585-77034604 MsG0380015948.01.T01:intron 30.0%
CATAGTACAGATAAACTGAT+TGG - Chr3:77034195-77034214 None:intergenic 30.0%
CATATATTTGCAATCCTAGT+GGG + Chr3:77033901-77033920 MsG0380015948.01.T01:CDS 30.0%
CATTCACTCAATGTATATTG+TGG + Chr3:77030831-77030850 MsG0380015948.01.T01:CDS 30.0%
CCTAATACACATTCAATTTG+AGG + Chr3:77030653-77030672 MsG0380015948.01.T01:intron 30.0%
CCTCAAATTGAATGTGTATT+AGG - Chr3:77030656-77030675 None:intergenic 30.0%
CTAATCCTTAATAGCATTTG+TGG - Chr3:77035869-77035888 None:intergenic 30.0%
CTCAATGTATATTGTGGATA+TGG + Chr3:77030837-77030856 MsG0380015948.01.T01:CDS 30.0%
GAACTCCCATAAAAAAGTAA+AGG - Chr3:77030910-77030929 None:intergenic 30.0%
GAATCCACTAAATCTTATCA+TGG - Chr3:77035718-77035737 None:intergenic 30.0%
GATCCTTAATAGCATTGTAA+AGG - Chr3:77035982-77036001 None:intergenic 30.0%
GATGGCTTAAATCACATATT+TGG - Chr3:77031462-77031481 None:intergenic 30.0%
GGTTTATGATATGACATTAG+TGG + Chr3:77032424-77032443 MsG0380015948.01.T01:intron 30.0%
TAGACATACATATTCTCTCT+TGG - Chr3:77034130-77034149 None:intergenic 30.0%
TAGACCATGATAAGATTTAG+TGG + Chr3:77035711-77035730 MsG0380015948.01.T01:intron 30.0%
TCAGATTCTTTCTCTTTCAA+TGG + Chr3:77035058-77035077 MsG0380015948.01.T01:intron 30.0%
TCATATATTTGCAATCCTAG+TGG + Chr3:77033900-77033919 MsG0380015948.01.T01:CDS 30.0%
TCATCTACCAATTCTTATCA+TGG + Chr3:77034970-77034989 MsG0380015948.01.T01:intron 30.0%
TCTTGATACTGTCATATTTG+TGG + Chr3:77031770-77031789 MsG0380015948.01.T01:CDS 30.0%
TGTATATTGTGGATATGGAA+CGG + Chr3:77030842-77030861 MsG0380015948.01.T01:CDS 30.0%
TGTCATATTTGTGGTTAAGA+AGG + Chr3:77031779-77031798 MsG0380015948.01.T01:CDS 30.0%
TGTGATGTTATGTGTAACTA+TGG - Chr3:77035469-77035488 None:intergenic 30.0%
TTCTTTATGTATTTGGTTGC+AGG + Chr3:77030772-77030791 MsG0380015948.01.T01:intron 30.0%
TTTAGTAGTTTAAGAGACAG+AGG - Chr3:77031413-77031432 None:intergenic 30.0%
! GCATATTTTATAGAGCTTTC+TGG + Chr3:77032093-77032112 MsG0380015948.01.T01:intron 30.0%
! TAATCTCTGAAAGAAAGTGT+TGG + Chr3:77034819-77034838 MsG0380015948.01.T01:intron 30.0%
! TGTAGTTTTTGTAGTCATGA+TGG + Chr3:77036600-77036619 MsG0380015948.01.T01:intron 30.0%
! TGTGAGTATTGTGTTAAATC+TGG + Chr3:77035440-77035459 MsG0380015948.01.T01:intron 30.0%
!! AAATATTGGCTTTACTGCAT+AGG + Chr3:77031207-77031226 MsG0380015948.01.T01:intron 30.0%
!! AATATTGGCTTTACTGCATA+GGG + Chr3:77031208-77031227 MsG0380015948.01.T01:intron 30.0%
!! AATGCTATTAAGGATTAGTC+TGG + Chr3:77035871-77035890 MsG0380015948.01.T01:intron 30.0%
!! ACACTTTGTCTTATTTGTAC+AGG + Chr3:77036042-77036061 MsG0380015948.01.T01:intron 30.0%
!! AGAACAGATTTGTTGTTTGT+AGG + Chr3:77033708-77033727 MsG0380015948.01.T01:intron 30.0%
!! AGATGGTTTGGTAAAAAAGA+TGG + Chr3:77032231-77032250 MsG0380015948.01.T01:intron 30.0%
!! CTTTTCTTTTTAGTGCATAG+AGG + Chr3:77034253-77034272 MsG0380015948.01.T01:intron 30.0%
!! TAAAAAAGATGGTGGATACT+AGG + Chr3:77032242-77032261 MsG0380015948.01.T01:intron 30.0%
!! TTATCTTTTTGGCACATGTT+TGG - Chr3:77035351-77035370 None:intergenic 30.0%
!!! AATTTTGGCTTTGGTTTCTT+TGG - Chr3:77035158-77035177 None:intergenic 30.0%
!!! ATGCTTTGGTTTTGTTATTC+TGG + Chr3:77034069-77034088 MsG0380015948.01.T01:intron 30.0%
!!! ATTTTGGCTTTGGTTTCTTT+GGG - Chr3:77035157-77035176 None:intergenic 30.0%
!!! CAGCACTTAATTTGTCATTT+TGG + Chr3:77031946-77031965 MsG0380015948.01.T01:intron 30.0%
!!! GGTTGTATCTCTTTTTTCTA+TGG - Chr3:77035381-77035400 None:intergenic 30.0%
!!! GTCATTAGCATTTTTGGAAT+TGG + Chr3:77036463-77036482 MsG0380015948.01.T01:intron 30.0%
!!! TCATAGTTTTAGGATAGTAC+TGG + Chr3:77032031-77032050 MsG0380015948.01.T01:intron 30.0%
!!! TCTCTTTTTCAATCACTTGT+TGG + Chr3:77034521-77034540 MsG0380015948.01.T01:intron 30.0%
!!! TGATGGACCAATTTTTTCAA+CGG - Chr3:77035751-77035770 None:intergenic 30.0%
!!! TTGATAGGTTTTATTTGGTG+TGG - Chr3:77035001-77035020 None:intergenic 30.0%
!!! TTTTATTTTTGGGTAGGGAA+AGG + Chr3:77031114-77031133 MsG0380015948.01.T01:intron 30.0%
AAAAGAGATACAACCCTCTA+AGG + Chr3:77035386-77035405 MsG0380015948.01.T01:intron 35.0%
AACATTATCACGAGAGTCAT+CGG - Chr3:77030122-77030141 None:intergenic 35.0%
AAGACCGTAAAGTTGTGAAA+AGG + Chr3:77034776-77034795 MsG0380015948.01.T01:intron 35.0%
AAGTACATATTCCCATTGCA+GGG - Chr3:77034464-77034483 None:intergenic 35.0%
AAGTCAAATAGCTGGAATTG+TGG + Chr3:77031309-77031328 MsG0380015948.01.T01:intron 35.0%
ACAAAACCAAAGCATAAACC+GGG - Chr3:77034064-77034083 None:intergenic 35.0%
ACAACTGTGTAATCTTACAG+TGG - Chr3:77033997-77034016 None:intergenic 35.0%
ACACACAAATATTATGCTCC+CGG + Chr3:77034043-77034062 MsG0380015948.01.T01:intron 35.0%
ACAGATAAACTGATTGGAAC+AGG - Chr3:77034189-77034208 None:intergenic 35.0%
ACATTGATATACAACCTGCA+AGG - Chr3:77031861-77031880 None:intergenic 35.0%
ACTAAAACCCCTCAATCTAA+TGG + Chr3:77031427-77031446 MsG0380015948.01.T01:intron 35.0%
AGACCGTAAAGTTGTGAAAA+GGG + Chr3:77034777-77034796 MsG0380015948.01.T01:intron 35.0%
AGCAACATCTGATATCTTAC+TGG - Chr3:77035812-77035831 None:intergenic 35.0%
AGCAAGACCTGAAAAATACA+CGG - Chr3:77033530-77033549 None:intergenic 35.0%
AGTTACTGTCTTATAAAGGC+TGG + Chr3:77033952-77033971 MsG0380015948.01.T01:CDS 35.0%
ATTAGAGACCCTAACTAGTT+GGG + Chr3:77036415-77036434 MsG0380015948.01.T01:intron 35.0%
CAAAGTAAGGCTCCAAAATT+GGG - Chr3:77037018-77037037 None:intergenic 35.0%
CAACATCTGATATCTTACTG+GGG - Chr3:77035810-77035829 None:intergenic 35.0%
CAATCCTAATACCACTTACT+AGG - Chr3:77035586-77035605 None:intergenic 35.0%
CAGATTTGGAAAAGTCGTAA+CGG - Chr3:77029978-77029997 None:intergenic 35.0%
CATCTTAGACCAAAACTACA+AGG - Chr3:77034920-77034939 None:intergenic 35.0%
CATTGATATACAACCTGCAA+GGG - Chr3:77031860-77031879 None:intergenic 35.0%
CTAGTAGACTATGTGATCAA+GGG - Chr3:77036772-77036791 None:intergenic 35.0%
GATCTTAGGTCTATCAGTAT+GGG - Chr3:77030170-77030189 None:intergenic 35.0%
GATGATGACAGACAAAGAAA+GGG - Chr3:77029920-77029939 None:intergenic 35.0%
GCAACATCTGATATCTTACT+GGG - Chr3:77035811-77035830 None:intergenic 35.0%
GCATGCATTTCATTCAGATT+TGG - Chr3:77029992-77030011 None:intergenic 35.0%
GCGTGAGAAATTGAAAATTG+CGG + Chr3:77032866-77032885 MsG0380015948.01.T01:CDS 35.0%
GGATAGACCATGATAAGAAT+TGG - Chr3:77034980-77034999 None:intergenic 35.0%
GGGAATTACTTAAGAACACA+AGG - Chr3:77032727-77032746 None:intergenic 35.0%
GTAAAAGCAGTCTCAAACAA+AGG - Chr3:77031736-77031755 None:intergenic 35.0%
GTATGTTGTACCATGTACAT+AGG + Chr3:77037095-77037114 MsG0380015948.01.T01:CDS 35.0%
TAAGTACATATTCCCATTGC+AGG - Chr3:77034465-77034484 None:intergenic 35.0%
TAGTTCCAACATGTTTAACC+AGG - Chr3:77036723-77036742 None:intergenic 35.0%
TATCAGTATGGGAAAGAAGA+GGG - Chr3:77030159-77030178 None:intergenic 35.0%
TATTAGAGACCCTAACTAGT+TGG + Chr3:77036414-77036433 MsG0380015948.01.T01:intron 35.0%
TCAAAGTAAGGCTCCAAAAT+TGG - Chr3:77037019-77037038 None:intergenic 35.0%
TCTACGTAATACAAGAATCG+TGG - Chr3:77033394-77033413 None:intergenic 35.0%
TCTAGTAGACTATGTGATCA+AGG - Chr3:77036773-77036792 None:intergenic 35.0%
TGATCTTAGGTCTATCAGTA+TGG - Chr3:77030171-77030190 None:intergenic 35.0%
TGTAAAAGGGCAATGAATTG+AGG + Chr3:77030717-77030736 MsG0380015948.01.T01:intron 35.0%
TTAAGAACACAAGGTTGCAA+AGG - Chr3:77032718-77032737 None:intergenic 35.0%
TTAAGTTCCACTTTCTTGTC+CGG - Chr3:77033262-77033281 None:intergenic 35.0%
TTACAATGACACGTCAACAT+TGG + Chr3:77030319-77030338 MsG0380015948.01.T01:intron 35.0%
TTGACACCGGTAATTATTTG+TGG - Chr3:77030595-77030614 None:intergenic 35.0%
TTGATGAAAATATGCCCACT+AGG - Chr3:77033918-77033937 None:intergenic 35.0%
TTTGCGTTTGTATGATTTCG+AGG + Chr3:77033748-77033767 MsG0380015948.01.T01:intron 35.0%
! AAGAATCTGAAGTCTGAAAG+AGG - Chr3:77035048-77035067 None:intergenic 35.0%
! ACACATTCAATTTGAGGTGT+AGG + Chr3:77030659-77030678 MsG0380015948.01.T01:intron 35.0%
! AGAATCTGAAGTCTGAAAGA+GGG - Chr3:77035047-77035066 None:intergenic 35.0%
! AGGTTGACTGTCTTTTCATT+TGG + Chr3:77034426-77034445 MsG0380015948.01.T01:intron 35.0%
! ATACTCTGGTTTACTATGCA+TGG + Chr3:77030871-77030890 MsG0380015948.01.T01:CDS 35.0%
! ATGAGAGAGACAAAGTTGAT+AGG - Chr3:77035016-77035035 None:intergenic 35.0%
! GATGAAACTTGCTTTAGCTA+TGG - Chr3:77035274-77035293 None:intergenic 35.0%
! GTTGATTTCCCAACTAGTTA+GGG - Chr3:77036426-77036445 None:intergenic 35.0%
! TACCCCTTTTCACAACTTTA+CGG - Chr3:77034783-77034802 None:intergenic 35.0%
! TGATGATGACAGACAAAGAA+AGG - Chr3:77029921-77029940 None:intergenic 35.0%
! TGTCTTTTCATTTGGCATAC+TGG + Chr3:77034434-77034453 MsG0380015948.01.T01:CDS 35.0%
! TTCAATGCCGTGTATTTTTC+AGG + Chr3:77033520-77033539 MsG0380015948.01.T01:intron 35.0%
! TTTGTAGTCATGATGGAAGT+AGG + Chr3:77036607-77036626 MsG0380015948.01.T01:intron 35.0%
! TTTTGCATTTAGTCTCTTCC+TGG + Chr3:77036702-77036721 MsG0380015948.01.T01:intron 35.0%
! TTTTGGCACATGTTTGGTAA+TGG - Chr3:77035345-77035364 None:intergenic 35.0%
!! ACAAAAGCTTTGGGTTTGTT+TGG + Chr3:77034595-77034614 MsG0380015948.01.T01:intron 35.0%
!! TCTGGTTAAAATCGAGTTGA+AGG - Chr3:77030503-77030522 None:intergenic 35.0%
!! TGGTTTGGTAAAAAAGATGG+TGG + Chr3:77032234-77032253 MsG0380015948.01.T01:intron 35.0%
!! TGTTGATTTCCCAACTAGTT+AGG - Chr3:77036427-77036446 None:intergenic 35.0%
!!! CTTGTAGTTTTGGTCTAAGA+TGG + Chr3:77034918-77034937 MsG0380015948.01.T01:intron 35.0%
!!! GTTTGGTTTTACTTCTAGAG+AGG + Chr3:77030442-77030461 MsG0380015948.01.T01:intron 35.0%
!!! TTTTCTTCTGGGATAAGAAG+CGG - Chr3:77030203-77030222 None:intergenic 35.0%
AACACAACAGCCTGAACAAA+AGG - Chr3:77032798-77032817 None:intergenic 40.0%
AAGAGCCTAAGTTTCGTGTT+TGG - Chr3:77033353-77033372 None:intergenic 40.0%
AAGCAATGCTGACATACGTT+AGG + Chr3:77033288-77033307 MsG0380015948.01.T01:intron 40.0%
AATACTCACAACCCAAGTGA+CGG - Chr3:77035430-77035449 None:intergenic 40.0%
AATCAACGGGAACAAACAAC+TGG - Chr3:77033660-77033679 None:intergenic 40.0%
ACAACCCAAACACGAAACTT+AGG + Chr3:77033345-77033364 MsG0380015948.01.T01:intron 40.0%
ACAAGGTTGCAAAGGATGAA+TGG - Chr3:77032710-77032729 None:intergenic 40.0%
ACATTGGATGTTCCAAACAG+TGG - Chr3:77031814-77031833 None:intergenic 40.0%
AGAGCCTAAGTTTCGTGTTT+GGG - Chr3:77033352-77033371 None:intergenic 40.0%
AGTAGCTAATTCAGCACTCA+AGG - Chr3:77031525-77031544 None:intergenic 40.0%
ATCAGTATGGGAAAGAAGAG+GGG - Chr3:77030158-77030177 None:intergenic 40.0%
ATGAAACGACGTCAGATTGA+AGG - Chr3:77029954-77029973 None:intergenic 40.0%
ATGATTGCTGTAACTAGAGC+TGG + Chr3:77034299-77034318 MsG0380015948.01.T01:intron 40.0%
CAAACGTAAAGAGAACGTCT+AGG - Chr3:77036363-77036382 None:intergenic 40.0%
CAAGGTTGCAAAGGATGAAT+GGG - Chr3:77032709-77032728 None:intergenic 40.0%
CAAGTAAACCTCATACTACC+CGG + Chr3:77033240-77033259 MsG0380015948.01.T01:intron 40.0%
CAATGATAACTGCACTCTAC+TGG + Chr3:77033192-77033211 MsG0380015948.01.T01:intron 40.0%
CTATCAGTATGGGAAAGAAG+AGG - Chr3:77030160-77030179 None:intergenic 40.0%
CTCTTCCTGGTTAAACATGT+TGG + Chr3:77036715-77036734 MsG0380015948.01.T01:intron 40.0%
CTTGTGTAGCAAGCATTTCT+CGG - Chr3:77033582-77033601 None:intergenic 40.0%
GAAGAAGAAGAAGATGGAAG+TGG - Chr3:77030100-77030119 None:intergenic 40.0%
GAATTCAACGACTCCAATCA+TGG + Chr3:77032818-77032837 MsG0380015948.01.T01:CDS 40.0%
GACCGTAAAGTTGTGAAAAG+GGG + Chr3:77034778-77034797 MsG0380015948.01.T01:intron 40.0%
GCGGTGAAGATATTGATCTT+AGG - Chr3:77030184-77030203 None:intergenic 40.0%
GGGACACTAATGTCAAAGTA+AGG - Chr3:77037031-77037050 None:intergenic 40.0%
GGGTAGTATGAGGTTTACTT+GGG - Chr3:77033241-77033260 None:intergenic 40.0%
GGTCTTGCTTGTAGTTTCTT+CGG + Chr3:77033541-77033560 MsG0380015948.01.T01:intron 40.0%
GGTTCGAAAGCAATTCTGTT+TGG + Chr3:77031043-77031062 MsG0380015948.01.T01:intron 40.0%
GTCAATGGAATGAATAGGGA+AGG - Chr3:77031156-77031175 None:intergenic 40.0%
GTTATAGCGCTGTAGTTTAG+CGG + Chr3:77031333-77031352 MsG0380015948.01.T01:intron 40.0%
TAAGTTCCACTTTCTTGTCC+GGG - Chr3:77033261-77033280 None:intergenic 40.0%
TCAACTTTGTCTAACTGTCC+TGG - Chr3:77033847-77033866 None:intergenic 40.0%
TCATCGGAAGAAGAAGAAGA+TGG - Chr3:77030106-77030125 None:intergenic 40.0%
TCATTCGGTCTAGAAAGACA+AGG + Chr3:77033048-77033067 MsG0380015948.01.T01:intron 40.0%
TCCAATCATGGCTTCAGTAA+TGG + Chr3:77032830-77032849 MsG0380015948.01.T01:CDS 40.0%
TGGCATACTAAACCTTGTGT+AGG + Chr3:77033212-77033231 MsG0380015948.01.T01:intron 40.0%
TGTAATCATATGCGCCATGT+AGG - Chr3:77030417-77030436 None:intergenic 40.0%
TGTCCTGGAAAATCCACATT+CGG - Chr3:77033832-77033851 None:intergenic 40.0%
TTAAGCAGTGTTGTCAATCG+CGG - Chr3:77031388-77031407 None:intergenic 40.0%
TTACTTGGGTTACCTACACA+AGG - Chr3:77033227-77033246 None:intergenic 40.0%
TTGTACTGAATATCGGACTG+CGG - Chr3:77031285-77031304 None:intergenic 40.0%
TTTGTCTAAGTGAGGAAGTC+TGG + Chr3:77035644-77035663 MsG0380015948.01.T01:intron 40.0%
! CTTTGGTTTCTTTGGGAGTT+GGG - Chr3:77035150-77035169 None:intergenic 40.0%
! GACCTGTAGATGCTTTTGTA+CGG + Chr3:77032292-77032311 MsG0380015948.01.T01:intron 40.0%
! TATTCTAGCCTTCTTTGCTG+AGG + Chr3:77036114-77036133 MsG0380015948.01.T01:CDS 40.0%
! TCAGAAGTTGCCTTTTGTTC+AGG + Chr3:77032785-77032804 MsG0380015948.01.T01:CDS 40.0%
! TTTCCGAATGTGGATTTTCC+AGG + Chr3:77033826-77033845 MsG0380015948.01.T01:intron 40.0%
!! AAGATGGTGGATACTAGGTT+AGG + Chr3:77032247-77032266 MsG0380015948.01.T01:intron 40.0%
!! TTACTTTTAAGAGCCCTTGC+AGG + Chr3:77031844-77031863 MsG0380015948.01.T01:CDS 40.0%
!!! CATTTTTGACTTGGCAGTTC+AGG + Chr3:77031705-77031724 MsG0380015948.01.T01:CDS 40.0%
AAACGACGTCAGATTGAAGG+AGG - Chr3:77029951-77029970 None:intergenic 45.0%
AACGACGTCAGATTGAAGGA+GGG - Chr3:77029950-77029969 None:intergenic 45.0%
ACACTCAGTGTGATAAGGCT+TGG + Chr3:77032472-77032491 MsG0380015948.01.T01:intron 45.0%
ACATGTGTCAGTGTCCTACA+TGG + Chr3:77030400-77030419 MsG0380015948.01.T01:intron 45.0%
ACGGAGAGTAGATCAGATAG+AGG + Chr3:77032311-77032330 MsG0380015948.01.T01:intron 45.0%
ACTCAAGGACCATTGTACGA+TGG - Chr3:77031510-77031529 None:intergenic 45.0%
AGACACAAACACGTTGACAC+CGG - Chr3:77030608-77030627 None:intergenic 45.0%
AGCTAAATGCCACCTCTTAC+TGG - Chr3:77034892-77034911 None:intergenic 45.0%
AGGACTACAACTTGAGAGGA+TGG + Chr3:77036285-77036304 MsG0380015948.01.T01:CDS 45.0%
AGGAGTGAACAACCACTGTT+TGG + Chr3:77031799-77031818 MsG0380015948.01.T01:CDS 45.0%
AGTTGCCAACATCCAGTACA+TGG + Chr3:77036312-77036331 MsG0380015948.01.T01:CDS 45.0%
ATACTACCCGGACAAGAAAG+TGG + Chr3:77033252-77033271 MsG0380015948.01.T01:intron 45.0%
CAACCACACTCAGTGTGATA+AGG + Chr3:77032467-77032486 MsG0380015948.01.T01:intron 45.0%
CATGTACATAGGACCTGACA+AGG + Chr3:77037106-77037125 MsG0380015948.01.T01:CDS 45.0%
CGGAGAGTAGATCAGATAGA+GGG + Chr3:77032312-77032331 MsG0380015948.01.T01:intron 45.0%
CGGGTAGTATGAGGTTTACT+TGG - Chr3:77033242-77033261 None:intergenic 45.0%
CTGTGTAATCTTACAGTGGC+TGG - Chr3:77033993-77034012 None:intergenic 45.0%
CTTATCACACTGAGTGTGGT+TGG - Chr3:77032469-77032488 None:intergenic 45.0%
CTTGTCAGGTCCTATGTACA+TGG - Chr3:77037108-77037127 None:intergenic 45.0%
GAAGAAGAAGATGGAAGTGG+TGG - Chr3:77030097-77030116 None:intergenic 45.0%
GAGGGTAGTCAGATTACTAG+AGG + Chr3:77032330-77032349 MsG0380015948.01.T01:intron 45.0%
GATATGGAGAAGCTGTAGCT+GGG - Chr3:77035236-77035255 None:intergenic 45.0%
GCATGCTCCAAAATCAACCA+TGG + Chr3:77030006-77030025 MsG0380015948.01.T01:CDS 45.0%
GCCATTACTGAAGCCATGAT+TGG - Chr3:77032834-77032853 None:intergenic 45.0%
GGACTACAACTTGAGAGGAT+GGG + Chr3:77036286-77036305 MsG0380015948.01.T01:CDS 45.0%
GTAAGAGGTGGCATTTAGCT+TGG + Chr3:77034892-77034911 MsG0380015948.01.T01:intron 45.0%
GTGATCTGAACCGTTGGATT+CGG - Chr3:77030038-77030057 None:intergenic 45.0%
GTGATGATACCTCCATGTAC+TGG - Chr3:77036327-77036346 None:intergenic 45.0%
TACCTCCATGTACTGGATGT+TGG - Chr3:77036320-77036339 None:intergenic 45.0%
TATGCTCCCGGTTTATGCTT+TGG + Chr3:77034055-77034074 MsG0380015948.01.T01:intron 45.0%
TCATGGCTTCAGTAATGGCA+CGG + Chr3:77032835-77032854 MsG0380015948.01.T01:CDS 45.0%
TGATATGGAGAAGCTGTAGC+TGG - Chr3:77035237-77035256 None:intergenic 45.0%
TGATCTGAACCGTTGGATTC+GGG - Chr3:77030037-77030056 None:intergenic 45.0%
TGTCTGTGTGAGTGCTTCAT+AGG + Chr3:77030623-77030642 MsG0380015948.01.T01:intron 45.0%
TGTGTGAGTGCTTCATAGGT+AGG + Chr3:77030627-77030646 MsG0380015948.01.T01:intron 45.0%
TTGGGAGTTGGGATTGTGAA+TGG - Chr3:77035139-77035158 None:intergenic 45.0%
TTTCTTGTCCGGGTAGTATG+AGG - Chr3:77033251-77033270 None:intergenic 45.0%
! AAGCCTTATCACACTGAGTG+TGG - Chr3:77032473-77032492 None:intergenic 45.0%
! AGCTTGGACCCTTGTAGTTT+TGG + Chr3:77034908-77034927 MsG0380015948.01.T01:intron 45.0%
! AGGCAGCACTAACCCAATTT+TGG + Chr3:77037003-77037022 MsG0380015948.01.T01:CDS 45.0%
! AGTCATGATGGAAGTAGGTC+AGG + Chr3:77036612-77036631 MsG0380015948.01.T01:intron 45.0%
! CGAGAAATGCTTGCTACACA+AGG + Chr3:77033580-77033599 MsG0380015948.01.T01:CDS 45.0%
! GATACTAGGTTAGGTGGGTT+GGG + Chr3:77032256-77032275 MsG0380015948.01.T01:intron 45.0%
! GCTTTGGTTTCTTTGGGAGT+TGG - Chr3:77035151-77035170 None:intergenic 45.0%
! GTCATGATGGAAGTAGGTCA+GGG + Chr3:77036613-77036632 MsG0380015948.01.T01:intron 45.0%
! TGGTGGATACTAGGTTAGGT+GGG + Chr3:77032251-77032270 MsG0380015948.01.T01:intron 45.0%
!! ACTCGGGGTTGTTTTCTTCT+GGG - Chr3:77030214-77030233 None:intergenic 45.0%
!! ATACAGGTCTTGTTAGCACG+AGG + Chr3:77036265-77036284 MsG0380015948.01.T01:intron 45.0%
!! ATGGTGGATACTAGGTTAGG+TGG + Chr3:77032250-77032269 MsG0380015948.01.T01:intron 45.0%
!! CTCCGTACAAAAGCATCTAC+AGG - Chr3:77032297-77032316 None:intergenic 45.0%
!! GGCACATGTTTGGTAATGGT+AGG - Chr3:77035341-77035360 None:intergenic 45.0%
!! TACTCGGGGTTGTTTTCTTC+TGG - Chr3:77030215-77030234 None:intergenic 45.0%
!! TGGAACGGTTCTAGATACTC+TGG + Chr3:77030857-77030876 MsG0380015948.01.T01:CDS 45.0%
!! TTTTGGGTAGGGAAAGGAGA+GGG + Chr3:77031120-77031139 MsG0380015948.01.T01:intron 45.0%
!!! TTTTTGGGTAGGGAAAGGAG+AGG + Chr3:77031119-77031138 MsG0380015948.01.T01:intron 45.0%
!! TGTTAAAAAAAAAAATTATA+TGG + Chr3:77032552-77032571 MsG0380015948.01.T01:intron 5.0%
!!! AAATGATTTAATATTTTATA+TGG + Chr3:77032524-77032543 MsG0380015948.01.T01:intron 5.0%
AACGAGGTGATCGAAAGCTG+GGG - Chr3:77037051-77037070 None:intergenic 50.0%
CAACGAGGTGATCGAAAGCT+GGG - Chr3:77037052-77037071 None:intergenic 50.0%
CACAACCTTGTCCGTCACTT+GGG + Chr3:77035416-77035435 MsG0380015948.01.T01:intron 50.0%
CACGAGGACTACAACTTGAG+AGG + Chr3:77036281-77036300 MsG0380015948.01.T01:CDS 50.0%
CATAGGACCTGACAAGGAGA+TGG + Chr3:77037112-77037131 MsG0380015948.01.T01:CDS 50.0%
GAAGAAGATGGAAGTGGTGG+TGG - Chr3:77030094-77030113 None:intergenic 50.0%
GAGTTGCACCTCAGCAAAGA+AGG - Chr3:77036125-77036144 None:intergenic 50.0%
GGATACTAGGTTAGGTGGGT+TGG + Chr3:77032255-77032274 MsG0380015948.01.T01:intron 50.0%
GGGAAAGAAGAGGGGCAATT+TGG - Chr3:77030150-77030169 None:intergenic 50.0%
TGCCAACATCCAGTACATGG+AGG + Chr3:77036315-77036334 MsG0380015948.01.T01:CDS 50.0%
TGGAAGTAGGTCAGGGATGA+TGG + Chr3:77036620-77036639 MsG0380015948.01.T01:intron 50.0%
TTGAGGCTTGGACCAGTAAG+AGG + Chr3:77034877-77034896 MsG0380015948.01.T01:intron 50.0%
! ACTGAGTGTGGTTGGCTACA+TGG - Chr3:77032461-77032480 None:intergenic 50.0%
! ATACTGGCTAGCCCTGCAAT+GGG + Chr3:77034450-77034469 MsG0380015948.01.T01:CDS 50.0%
!! GAGATACAACCCTCTAAGGC+AGG + Chr3:77035390-77035409 MsG0380015948.01.T01:intron 50.0%
!! GGAGACGCCATGGTTGATTT+TGG - Chr3:77030016-77030035 None:intergenic 50.0%
AGAAGCTGTAGCTGGGAGGT+TGG - Chr3:77035229-77035248 None:intergenic 55.0%
AGGCTTGGACCAGTAAGAGG+TGG + Chr3:77034880-77034899 MsG0380015948.01.T01:intron 55.0%
ATGGAGAAGCTGTAGCTGGG+AGG - Chr3:77035233-77035252 None:intergenic 55.0%
ATGGCGTCTCCCGAATCCAA+CGG + Chr3:77030025-77030044 MsG0380015948.01.T01:CDS 55.0%
CCAACGAGGTGATCGAAAGC+TGG - Chr3:77037053-77037072 None:intergenic 55.0%
CCAGCTTTCGATCACCTCGT+TGG + Chr3:77037050-77037069 MsG0380015948.01.T01:CDS 55.0%
GACGACGTGATCTGAACCGT+TGG - Chr3:77030044-77030063 None:intergenic 55.0%
GCACAACCTTGTCCGTCACT+TGG + Chr3:77035415-77035434 MsG0380015948.01.T01:intron 55.0%
GTTGTGCTGCCTGCCTTAGA+GGG - Chr3:77035402-77035421 None:intergenic 55.0%
! CATACTGGCTAGCCCTGCAA+TGG + Chr3:77034449-77034468 MsG0380015948.01.T01:CDS 55.0%
!! CACAACCCAAGTGACGGACA+AGG - Chr3:77035424-77035443 None:intergenic 55.0%
!! GATGGAAGTGGTGGTGGTTG+TGG - Chr3:77030088-77030107 None:intergenic 55.0%
GGTTGTGCTGCCTGCCTTAG+AGG - Chr3:77035403-77035422 None:intergenic 60.0%
GTTGGATTCGGGAGACGCCA+TGG - Chr3:77030026-77030045 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 77029887 77037139 77029887 ID=MsG0380015948.01;Name=MsG0380015948.01
Chr3 mRNA 77029887 77037139 77029887 ID=MsG0380015948.01.T01;Parent=MsG0380015948.01;Name=MsG0380015948.01.T01;_AED=0.45;_eAED=0.46;_QI=117|0.77|0.7|1|0.44|0.4|10|0|458
Chr3 exon 77029887 77030231 77029887 ID=MsG0380015948.01.T01:exon:24993;Parent=MsG0380015948.01.T01
Chr3 exon 77030794 77030947 77030794 ID=MsG0380015948.01.T01:exon:24994;Parent=MsG0380015948.01.T01
Chr3 exon 77031620 77031896 77031620 ID=MsG0380015948.01.T01:exon:24995;Parent=MsG0380015948.01.T01
Chr3 exon 77032782 77032897 77032782 ID=MsG0380015948.01.T01:exon:24996;Parent=MsG0380015948.01.T01
Chr3 exon 77033542 77033601 77033542 ID=MsG0380015948.01.T01:exon:24997;Parent=MsG0380015948.01.T01
Chr3 exon 77033848 77033998 77033848 ID=MsG0380015948.01.T01:exon:24998;Parent=MsG0380015948.01.T01
Chr3 exon 77034428 77034494 77034428 ID=MsG0380015948.01.T01:exon:24999;Parent=MsG0380015948.01.T01
Chr3 exon 77036064 77036135 77036064 ID=MsG0380015948.01.T01:exon:25000;Parent=MsG0380015948.01.T01
Chr3 exon 77036271 77036347 77036271 ID=MsG0380015948.01.T01:exon:25001;Parent=MsG0380015948.01.T01
Chr3 exon 77036965 77037139 77036965 ID=MsG0380015948.01.T01:exon:25002;Parent=MsG0380015948.01.T01
Chr3 five_prime_UTR 77029887 77030003 77029887 ID=MsG0380015948.01.T01:five_prime_utr;Parent=MsG0380015948.01.T01
Chr3 CDS 77030004 77030231 77030004 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77030794 77030947 77030794 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77031620 77031896 77031620 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77032782 77032897 77032782 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77033542 77033601 77033542 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77033848 77033998 77033848 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77034428 77034494 77034428 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77036064 77036135 77036064 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77036271 77036347 77036271 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Chr3 CDS 77036965 77037139 77036965 ID=MsG0380015948.01.T01:cds;Parent=MsG0380015948.01.T01
Gene Sequence

>MsG0380015948.01.T01

ATGCATGCTCCAAAATCAACCATGGCGTCTCCCGAATCCAACGGTTCAGATCACGTCGTCGAGCTCATTGTTCGTGACATACCACAACCACCACCACTTCCATCTTCTTCTTCTTCCGATGACTCTCGTGATAATGTTCATGACCAAATTGCCCCTCTTCTTTCCCATACTGATAGACCTAAGATCAATATCTTCACCGCTTCTTATCCCAGAAGAAAACAACCCCGAGATGAAGTAACAAGACTACTTGAGTCTGAGACATCTCCATTCACTCAATGTATATTGTGGATATGGAACGGTTCTAGATACTCTGGTTTACTATGCATGGCTTTGTCATCTTTCCTTTACTTTTTTATGGGAGTTCTTTCCAATATTTTTTCTGATTTTTTTTTCTTCTCAAGATCTACAATTATCTTTTTTGCTTGTATTTTTTTTTTTTTGGGCGCTCCTTTTAATTTTTGCAATAACATTTTTGACTTGGCAGTTCAGGCAATTCCTTTGTTTGAGACTGCTTTTACAAGATGTACAATTATCTTGATACTGTCATATTTGTGGTTAAGAAGGAGTGAACAACCACTGTTTGGAACATCCAATGTTAGAATCATTTTACTTTTAAGAGCCCTTGCAGGTTGTATATCAATGTCAAGTTTTGTATATTGCTTTCAGAAGTTGCCTTTTGTTCAGGCTGTTGTGTTGAATTCAACGACTCCAATCATGGCTTCAGTAATGGCACGGTTCTTTTTGCGTGAGAAATTGAAAATTGCGGATATAGCAAGTCTTGCTTGTAGTTTCTTCGGCGTGCTCTTTTTCTTCCGAGAAATGCTTGCTACACAAGGACAGTTAGACAAAGTTGATGAAGCAAGCAATGCAAATGCTAAGCCAAGTCATCATATATTTGCAATCCTAGTGGGCATATTTTCATCAATAATTGGTGGAACTAGTTACTGTCTTATAAAGGCTGGAGCTAAAGCATCTGACCAGCCACTGTTGACTGTCTTTTCATTTGGCATACTGGCTAGCCCTGCAATGGGAATATGTACTTATGTCTTTGAGGATTTTGTTCTACCAACAGTTCAGTCAATTTTACTTATGGTTGTACTTGGTATTCTAGCCTTCTTTGCTGAGGTCTTGTTAGCACGAGGACTACAACTTGAGAGGATGGGTAAAGTTGCCAACATCCAGTACATGGAGGTATCATCACTTCTAGGGACTGATATAAAGCTATATATTTCTATTTTTCAGGCAGCACTAACCCAATTTTGGAGCCTTACTTTGACATTAGTGTCCCCAGCTTTCGATCACCTCGTTGGAATTTTACTTATTGTTGTTTCTGTATGTTGTACCATGTACATAGGACCTGACAAGGAGATGGAATGA
Protein sequence

>MsG0380015948.01.T01

MHAPKSTMASPESNGSDHVVELIVRDIPQPPPLPSSSSSDDSRDNVHDQIAPLLSHTDRPKINIFTASYPRRKQPRDEVTRLLESETSPFTQCILWIWNGSRYSGLLCMALSSFLYFFMGVLSNIFSDFFFFSRSTIIFFACIFFFLGAPFNFCNNIFDLAVQAIPLFETAFTRCTIILILSYLWLRRSEQPLFGTSNVRIILLLRALAGCISMSSFVYCFQKLPFVQAVVLNSTTPIMASVMARFFLREKLKIADIASLACSFFGVLFFFREMLATQGQLDKVDEASNANAKPSHHIFAILVGIFSSIIGGTSYCLIKAGAKASDQPLLTVFSFGILASPAMGICTYVFEDFVLPTVQSILLMVVLGILAFFAEVLLARGLQLERMGKVANIQYMEVSSLLGTDIKLYISIFQAALTQFWSLTLTLVSPAFDHLVGILLIVVSVCCTMYIGPDKEME*