AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016053.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016053.01.T01 MTR_3g082630 99.270 411 3 0 1 411 1 411 0.0 846
MsG0380016053.01.T01 MTR_5g069480 68.916 415 118 7 1 410 1 409 0.0 514
MsG0380016053.01.T01 MTR_5g069480 65.926 270 85 5 1 265 1 268 1.21e-117 345
MsG0380016053.01.T01 MTR_2g088900 32.308 455 224 11 1 405 97 517 1.61e-62 210
MsG0380016053.01.T01 MTR_7g108150 48.544 103 53 0 5 107 20 122 2.42e-29 117
MsG0380016053.01.T01 MTR_7g108150 62.500 48 18 0 348 395 322 369 9.68e-12 66.6
MsG0380016053.01.T01 MTR_1g109350 44.860 107 57 1 1 107 1 105 1.36e-24 103
MsG0380016053.01.T01 MTR_7g083540 35.971 139 81 2 1 132 1 138 1.22e-21 96.3
MsG0380016053.01.T01 MTR_7g083540 56.061 66 29 0 331 396 318 383 1.76e-14 75.1
MsG0380016053.01.T01 MTR_1g013450 44.048 84 46 1 4 86 5 88 6.20e-17 81.6
MsG0380016053.01.T01 MTR_3g105710 39.216 102 61 1 4 104 5 106 5.52e-16 78.2
MsG0380016053.01.T01 MTR_3g105710 45.833 72 36 1 333 401 208 279 4.52e-11 63.5
MsG0380016053.01.T01 MTR_4g128930 38.889 90 54 1 4 92 21 110 5.29e-15 76.3
MsG0380016053.01.T01 MTR_7g018170 41.758 91 52 1 5 94 26 116 1.83e-14 75.1
MsG0380016053.01.T01 MTR_4g067320 38.542 96 49 2 1 86 1 96 1.23e-13 70.5
MsG0380016053.01.T01 MTR_4g067320 38.542 96 49 2 1 86 1 96 1.25e-13 70.5
MsG0380016053.01.T01 MTR_5g021580 38.095 84 44 1 1 76 1 84 2.55e-11 62.8
MsG0380016053.01.T01 MTR_5g021580 38.095 84 44 1 1 76 1 84 3.09e-11 62.8
MsG0380016053.01.T01 MTR_1g023260 34.021 97 53 2 1 86 1 97 4.01e-11 62.4
MsG0380016053.01.T01 MTR_1g023260 34.021 97 53 2 1 86 1 97 4.05e-11 63.5
MsG0380016053.01.T01 MTR_4g071200 35.052 97 52 2 1 86 1 97 5.67e-11 62.4
MsG0380016053.01.T01 MTR_3g113070 33.673 98 53 2 1 86 1 98 8.90e-11 62.0
MsG0380016053.01.T02 MTR_3g082630 99.270 411 3 0 1 411 1 411 0.0 846
MsG0380016053.01.T02 MTR_5g069480 68.916 415 118 7 1 410 1 409 0.0 514
MsG0380016053.01.T02 MTR_5g069480 65.926 270 85 5 1 265 1 268 1.21e-117 345
MsG0380016053.01.T02 MTR_2g088900 32.308 455 224 11 1 405 97 517 1.61e-62 210
MsG0380016053.01.T02 MTR_7g108150 48.544 103 53 0 5 107 20 122 2.42e-29 117
MsG0380016053.01.T02 MTR_7g108150 62.500 48 18 0 348 395 322 369 9.68e-12 66.6
MsG0380016053.01.T02 MTR_1g109350 44.860 107 57 1 1 107 1 105 1.36e-24 103
MsG0380016053.01.T02 MTR_7g083540 35.971 139 81 2 1 132 1 138 1.22e-21 96.3
MsG0380016053.01.T02 MTR_7g083540 56.061 66 29 0 331 396 318 383 1.76e-14 75.1
MsG0380016053.01.T02 MTR_1g013450 44.048 84 46 1 4 86 5 88 6.20e-17 81.6
MsG0380016053.01.T02 MTR_3g105710 39.216 102 61 1 4 104 5 106 5.52e-16 78.2
MsG0380016053.01.T02 MTR_3g105710 45.833 72 36 1 333 401 208 279 4.52e-11 63.5
MsG0380016053.01.T02 MTR_4g128930 38.889 90 54 1 4 92 21 110 5.29e-15 76.3
MsG0380016053.01.T02 MTR_7g018170 41.758 91 52 1 5 94 26 116 1.83e-14 75.1
MsG0380016053.01.T02 MTR_4g067320 38.542 96 49 2 1 86 1 96 1.23e-13 70.5
MsG0380016053.01.T02 MTR_4g067320 38.542 96 49 2 1 86 1 96 1.25e-13 70.5
MsG0380016053.01.T02 MTR_5g021580 38.095 84 44 1 1 76 1 84 2.55e-11 62.8
MsG0380016053.01.T02 MTR_5g021580 38.095 84 44 1 1 76 1 84 3.09e-11 62.8
MsG0380016053.01.T02 MTR_1g023260 34.021 97 53 2 1 86 1 97 4.01e-11 62.4
MsG0380016053.01.T02 MTR_1g023260 34.021 97 53 2 1 86 1 97 4.05e-11 63.5
MsG0380016053.01.T02 MTR_4g071200 35.052 97 52 2 1 86 1 97 5.67e-11 62.4
MsG0380016053.01.T02 MTR_3g113070 33.673 98 53 2 1 86 1 98 8.90e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016053.01.T01 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T01 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T01 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T01 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T01 AT5G48250 53.699 419 140 10 1 411 1 373 1.37e-140 406
MsG0380016053.01.T01 AT3G21880 34.063 411 210 11 5 408 9 365 2.21e-61 203
MsG0380016053.01.T01 AT3G21880 34.063 411 210 11 5 408 9 365 2.21e-61 203
MsG0380016053.01.T01 AT3G21880 34.063 411 210 11 5 408 5 361 2.28e-61 202
MsG0380016053.01.T01 AT4G15250 53.153 111 50 2 5 115 5 113 6.87e-34 129
MsG0380016053.01.T01 AT4G15250 51.020 98 45 1 307 404 232 326 8.62e-20 90.1
MsG0380016053.01.T01 AT2G33500 47.170 106 55 1 5 109 12 117 2.85e-30 120
MsG0380016053.01.T01 AT2G33500 60.784 51 20 0 346 396 349 399 1.43e-12 69.3
MsG0380016053.01.T01 AT2G33500 47.170 106 55 1 5 109 12 117 2.98e-30 120
MsG0380016053.01.T01 AT2G33500 60.784 51 20 0 346 396 348 398 1.41e-12 69.3
MsG0380016053.01.T01 AT1G28050 39.041 146 86 2 5 147 9 154 5.62e-29 117
MsG0380016053.01.T01 AT1G28050 61.111 54 21 0 346 399 377 430 4.41e-13 70.9
MsG0380016053.01.T01 AT1G68190 46.847 111 57 2 1 110 10 119 5.82e-29 116
MsG0380016053.01.T01 AT1G68190 46.847 111 57 2 1 110 10 119 5.82e-29 116
MsG0380016053.01.T01 AT1G68190 46.847 111 57 2 1 110 39 148 1.03e-28 116
MsG0380016053.01.T01 AT2G47890 35.795 176 103 4 4 177 12 179 8.85e-26 105
MsG0380016053.01.T01 AT2G47890 36.420 162 95 3 4 165 12 165 3.20e-25 105
MsG0380016053.01.T01 AT2G47890 36.420 162 95 3 4 165 12 165 4.10e-25 105
MsG0380016053.01.T01 AT5G24930 43.333 90 50 1 4 92 5 94 4.10e-17 82.8
MsG0380016053.01.T01 AT5G24930 55.769 52 23 0 344 395 285 336 3.22e-11 64.7
MsG0380016053.01.T01 AT2G24790 42.222 90 51 1 4 92 7 96 8.61e-16 77.8
MsG0380016053.01.T01 AT2G24790 50.877 57 28 0 347 403 222 278 5.18e-11 63.5
MsG0380016053.01.T01 AT2G24790 42.222 90 51 1 4 92 7 96 8.69e-16 76.6
MsG0380016053.01.T01 AT5G15840 43.956 91 50 1 5 94 20 110 9.49e-15 75.9
MsG0380016053.01.T01 AT5G15840 43.956 91 50 1 5 94 20 110 1.60e-14 73.9
MsG0380016053.01.T01 AT5G15850 44.186 86 47 1 5 89 12 97 2.49e-14 74.3
MsG0380016053.01.T01 AT3G02380 40.000 100 53 2 5 97 16 115 1.44e-13 72.0
MsG0380016053.01.T01 AT3G02380 62.500 48 18 0 348 395 272 319 5.26e-12 67.0
MsG0380016053.01.T01 AT5G57660 30.216 139 92 2 5 142 22 156 2.34e-12 68.2
MsG0380016053.01.T01 AT2G31380 36.458 96 51 2 1 86 1 96 2.45e-12 66.6
MsG0380016053.01.T01 AT1G06040 37.500 96 50 2 1 86 1 96 3.91e-12 65.1
MsG0380016053.01.T01 AT1G06040 37.500 96 50 2 1 86 1 96 4.26e-12 66.2
MsG0380016053.01.T01 AT2G21320 39.286 84 43 1 1 76 1 84 5.80e-11 61.6
MsG0380016053.01.T01 AT4G38960 36.905 84 45 1 1 76 1 84 6.09e-11 61.6
MsG0380016053.01.T01 AT4G38960 36.905 84 45 1 1 76 1 84 6.09e-11 61.6
MsG0380016053.01.T01 AT1G75540 34.343 99 52 2 1 86 1 99 8.85e-11 63.2
MsG0380016053.01.T02 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T02 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T02 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T02 AT3G07650 52.955 423 136 10 1 411 1 372 9.39e-143 411
MsG0380016053.01.T02 AT5G48250 53.699 419 140 10 1 411 1 373 1.37e-140 406
MsG0380016053.01.T02 AT3G21880 34.063 411 210 11 5 408 9 365 2.21e-61 203
MsG0380016053.01.T02 AT3G21880 34.063 411 210 11 5 408 9 365 2.21e-61 203
MsG0380016053.01.T02 AT3G21880 34.063 411 210 11 5 408 5 361 2.28e-61 202
MsG0380016053.01.T02 AT4G15250 53.153 111 50 2 5 115 5 113 6.87e-34 129
MsG0380016053.01.T02 AT4G15250 51.020 98 45 1 307 404 232 326 8.62e-20 90.1
MsG0380016053.01.T02 AT2G33500 47.170 106 55 1 5 109 12 117 2.85e-30 120
MsG0380016053.01.T02 AT2G33500 60.784 51 20 0 346 396 349 399 1.43e-12 69.3
MsG0380016053.01.T02 AT2G33500 47.170 106 55 1 5 109 12 117 2.98e-30 120
MsG0380016053.01.T02 AT2G33500 60.784 51 20 0 346 396 348 398 1.41e-12 69.3
MsG0380016053.01.T02 AT1G28050 39.041 146 86 2 5 147 9 154 5.62e-29 117
MsG0380016053.01.T02 AT1G28050 61.111 54 21 0 346 399 377 430 4.41e-13 70.9
MsG0380016053.01.T02 AT1G68190 46.847 111 57 2 1 110 10 119 5.82e-29 116
MsG0380016053.01.T02 AT1G68190 46.847 111 57 2 1 110 10 119 5.82e-29 116
MsG0380016053.01.T02 AT1G68190 46.847 111 57 2 1 110 39 148 1.03e-28 116
MsG0380016053.01.T02 AT2G47890 35.795 176 103 4 4 177 12 179 8.85e-26 105
MsG0380016053.01.T02 AT2G47890 36.420 162 95 3 4 165 12 165 3.20e-25 105
MsG0380016053.01.T02 AT2G47890 36.420 162 95 3 4 165 12 165 4.10e-25 105
MsG0380016053.01.T02 AT5G24930 43.333 90 50 1 4 92 5 94 4.10e-17 82.8
MsG0380016053.01.T02 AT5G24930 55.769 52 23 0 344 395 285 336 3.22e-11 64.7
MsG0380016053.01.T02 AT2G24790 42.222 90 51 1 4 92 7 96 8.61e-16 77.8
MsG0380016053.01.T02 AT2G24790 50.877 57 28 0 347 403 222 278 5.18e-11 63.5
MsG0380016053.01.T02 AT2G24790 42.222 90 51 1 4 92 7 96 8.69e-16 76.6
MsG0380016053.01.T02 AT5G15840 43.956 91 50 1 5 94 20 110 9.49e-15 75.9
MsG0380016053.01.T02 AT5G15840 43.956 91 50 1 5 94 20 110 1.60e-14 73.9
MsG0380016053.01.T02 AT5G15850 44.186 86 47 1 5 89 12 97 2.49e-14 74.3
MsG0380016053.01.T02 AT3G02380 40.000 100 53 2 5 97 16 115 1.44e-13 72.0
MsG0380016053.01.T02 AT3G02380 62.500 48 18 0 348 395 272 319 5.26e-12 67.0
MsG0380016053.01.T02 AT5G57660 30.216 139 92 2 5 142 22 156 2.34e-12 68.2
MsG0380016053.01.T02 AT2G31380 36.458 96 51 2 1 86 1 96 2.45e-12 66.6
MsG0380016053.01.T02 AT1G06040 37.500 96 50 2 1 86 1 96 3.91e-12 65.1
MsG0380016053.01.T02 AT1G06040 37.500 96 50 2 1 86 1 96 4.26e-12 66.2
MsG0380016053.01.T02 AT2G21320 39.286 84 43 1 1 76 1 84 5.80e-11 61.6
MsG0380016053.01.T02 AT4G38960 36.905 84 45 1 1 76 1 84 6.09e-11 61.6
MsG0380016053.01.T02 AT4G38960 36.905 84 45 1 1 76 1 84 6.09e-11 61.6
MsG0380016053.01.T02 AT1G75540 34.343 99 52 2 1 86 1 99 8.85e-11 63.2

Find 47 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAATTCAGAAGTCTTCT+AGG 0.233514 3:-78439234 MsG0380016053.01.T01:three_prime_UTR
AGAAGACTTCTGAATTCTTA+TGG 0.258083 3:+78439237 None:intergenic
GCATGCATGCTGCTCTATAT+TGG 0.311248 3:-78438938 MsG0380016053.01.T01:three_prime_UTR
TCCCCTTCAAGCACCGTGTT+TGG 0.363090 3:-78439307 MsG0380016053.01.T01:three_prime_UTR
ATTATACACTCAGTAGCTTC+TGG 0.377897 3:+78439541 None:intergenic
GCACCATGTTTGTCATGTCC+TGG 0.382055 3:-78439190 MsG0380016053.01.T01:three_prime_UTR
ACCGGCCCTTCACGCGCCTT+CGG 0.385614 3:+78439609 None:intergenic
TAGCTTCTGGTTTGGCTCAA+AGG 0.415587 3:+78439554 None:intergenic
ACACTCAGTAGCTTCTGGTT+TGG 0.416653 3:+78439546 None:intergenic
AGCTTCTGGTTTGGCTCAAA+GGG 0.425533 3:+78439555 None:intergenic
TACCATCTTTGCGTTAAACT+TGG 0.431478 3:-78439282 MsG0380016053.01.T01:three_prime_UTR
CAAACATGGTGCATTGGTTA+AGG 0.435288 3:+78439201 None:intergenic
GCTCAAAGGGTCATAATCAT+AGG 0.437780 3:+78439568 None:intergenic
AAGTTGTATATTGTAATAGT+TGG 0.449540 3:-78439097 MsG0380016053.01.T01:three_prime_UTR
TGCCAAGTTTAACGCAAAGA+TGG 0.463754 3:+78439280 None:intergenic
TTGTCTTAAGTCAGATCCAT+TGG 0.473739 3:+78439012 None:intergenic
TGTAGTACTATGTATAGAAT+AGG 0.474673 3:-78438968 MsG0380016053.01.T01:three_prime_UTR
AATCCAAACACGGTGCTTGA+AGG 0.475571 3:+78439304 None:intergenic
TCCGAAGGCGCGTGAAGGGC+CGG 0.483385 3:-78439610 MsG0380016053.01.T01:CDS
ATCCAAACACGGTGCTTGAA+GGG 0.484236 3:+78439305 None:intergenic
GTCACAAACAAAACTTGTAT+TGG 0.489507 3:+78438908 None:intergenic
GAAGGACAGAGAATCGGATT+CGG 0.504142 3:+78439352 None:intergenic
GGTGCTTGAAGGGGACACTT+TGG 0.508002 3:+78439315 None:intergenic
ATATGCCTCTCGCAAGGAAA+GGG 0.514733 3:-78439639 MsG0380016053.01.T01:CDS
GGGGACACTTTGGATATGCT+TGG 0.516718 3:+78439325 None:intergenic
GGCAGTGAAGGACAGAGAAT+CGG 0.519420 3:+78439346 None:intergenic
TGATGTCCGAAGGCGCGTGA+AGG 0.519956 3:-78439615 MsG0380016053.01.T01:CDS
GTCATAATCATAGGCCTCGC+CGG 0.520189 3:+78439577 None:intergenic
CCTCGCCGGCTTTAACAAAC+CGG 0.526175 3:+78439591 None:intergenic
TTGGATATGCTTGGCAGTGA+AGG 0.527094 3:+78439334 None:intergenic
GATGTCCGAAGGCGCGTGAA+GGG 0.533693 3:-78439614 MsG0380016053.01.T01:CDS
AAGGGCCGGTTTGTTAAAGC+CGG 0.538044 3:-78439596 MsG0380016053.01.T01:CDS
TGACTTAAGACAAACTGTAA+AGG 0.543012 3:-78439002 MsG0380016053.01.T01:three_prime_UTR
CACCATGTTTGTCATGTCCT+GGG 0.550435 3:-78439189 MsG0380016053.01.T01:three_prime_UTR
TCTAGACGTGACTATAACCC+AGG 0.555713 3:+78439172 None:intergenic
ACATGACAAACATGGTGCAT+TGG 0.567699 3:+78439195 None:intergenic
GATATGCCTCTCGCAAGGAA+AGG 0.583865 3:-78439640 MsG0380016053.01.T01:CDS
TCCAAACACGGTGCTTGAAG+GGG 0.585520 3:+78439306 None:intergenic
TAGATGTATAAAATGTCCAA+TGG 0.590364 3:-78439028 MsG0380016053.01.T01:three_prime_UTR
AGGAAAGGGCTGATGTCCGA+AGG 0.595717 3:-78439625 MsG0380016053.01.T01:CDS
ATCAGCCCTTTCCTTGCGAG+AGG 0.604664 3:+78439634 None:intergenic
CAAGACAGTTCGTCATTGCA+CGG 0.611309 3:+78439447 None:intergenic
AGTGAGATATGCCTCTCGCA+AGG 0.625277 3:-78439645 MsG0380016053.01.T01:CDS
CCGGTTTGTTAAAGCCGGCG+AGG 0.638136 3:-78439591 MsG0380016053.01.T01:CDS
CAAAGATGGTAATCCAAACA+CGG 0.662802 3:+78439294 None:intergenic
AACCCAGGACATGACAAACA+TGG 0.671139 3:+78439187 None:intergenic
TATAGTCACGTCTAGAAGTG+CGG 0.683437 3:-78439165 MsG0380016053.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAACATAAAAGAA+AGG + Chr3:78439152-78439171 None:intergenic 10.0%
!! ATAAAAAACATGAACAAAAA+GGG + Chr3:78439348-78439367 None:intergenic 15.0%
!! GAAAAAAAGAAAATTTCATT+TGG - Chr3:78439527-78439546 MsG0380016053.01.T01:intron 15.0%
!! TCTAATTTGATAAAAATGTA+AGG + Chr3:78440656-78440675 None:intergenic 15.0%
!!! ATTGATTGTTATTATCTTTT+AGG - Chr3:78441931-78441950 MsG0380016053.01.T01:intron 15.0%
!!! ATTTTTAACCATTTCTTAAA+AGG - Chr3:78442142-78442161 MsG0380016053.01.T01:intron 15.0%
!! AAGTTGTATATTGTAATAGT+TGG - Chr3:78442565-78442584 MsG0380016053.01.T01:five_prime_UTR 20.0%
!! AGAGAAAAGAAAACAAAAAT+TGG + Chr3:78439750-78439769 None:intergenic 20.0%
!! ATCTTTATCAAATTATCTGA+AGG - Chr3:78439858-78439877 MsG0380016053.01.T01:intron 20.0%
!! CATAAAAAACATGAACAAAA+AGG + Chr3:78439349-78439368 None:intergenic 20.0%
!! TAAAGAAACAGTTTAAAGAT+GGG - Chr3:78439898-78439917 MsG0380016053.01.T01:intron 20.0%
!!! AAAAGTTGATATTTTTGGTA+TGG + Chr3:78439045-78439064 None:intergenic 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG + Chr3:78441077-78441096 None:intergenic 20.0%
!!! ACATCTAATTTTTATGTTCA+GGG - Chr3:78441302-78441321 MsG0380016053.01.T01:CDS 20.0%
!!! CAGAAAAAAGTTGATATTTT+TGG + Chr3:78439050-78439069 None:intergenic 20.0%
!!! CTTTTTGTTCATGTTTTTTA+TGG - Chr3:78439347-78439366 MsG0380016053.01.T01:three_prime_UTR 20.0%
!!! TACATCTAATTTTTATGTTC+AGG - Chr3:78441301-78441320 MsG0380016053.01.T01:CDS 20.0%
!!! TATTCTTTGAATTTGTTTGT+TGG - Chr3:78439462-78439481 MsG0380016053.01.T01:intron 20.0%
!!! TTTATAGTTGATGTTTTTCT+GGG - Chr3:78439204-78439223 MsG0380016053.01.T01:three_prime_UTR 20.0%
!!! TTTGTTTGTTGGTTTTTTAT+TGG - Chr3:78439473-78439492 MsG0380016053.01.T01:intron 20.0%
!!! TTTTATAGTTGATGTTTTTC+TGG - Chr3:78439203-78439222 MsG0380016053.01.T01:three_prime_UTR 20.0%
! AAACGATTATACCTGAAAAA+TGG - Chr3:78442169-78442188 MsG0380016053.01.T01:intron 25.0%
! AAACTATGAATTACTTGTCA+TGG - Chr3:78439689-78439708 MsG0380016053.01.T01:intron 25.0%
! AACATTCAGATATATACCTT+TGG + Chr3:78440477-78440496 None:intergenic 25.0%
! AACGATTATACCTGAAAAAT+GGG - Chr3:78442170-78442189 MsG0380016053.01.T01:intron 25.0%
! ACTTTCCCTTAAAAGATATA+AGG - Chr3:78441747-78441766 MsG0380016053.01.T01:CDS 25.0%
! ATACAAATTGTTTACACCTT+CGG - Chr3:78441251-78441270 MsG0380016053.01.T01:CDS 25.0%
! ATGATGAGAAAATTACCTTA+AGG + Chr3:78439121-78439140 None:intergenic 25.0%
! ATTCATAGTTTCATACAACA+AGG + Chr3:78439680-78439699 None:intergenic 25.0%
! CTAAAGAAACAGTTTAAAGA+TGG - Chr3:78439897-78439916 MsG0380016053.01.T01:intron 25.0%
! CTTTCTTCAAGAACAAAAAA+GGG - Chr3:78442258-78442277 MsG0380016053.01.T01:intron 25.0%
! GGATGAAATGGATATAAATA+TGG - Chr3:78440772-78440791 MsG0380016053.01.T01:CDS 25.0%
! GGTAACATGATAATCAAATT+AGG + Chr3:78441831-78441850 None:intergenic 25.0%
! GTGGATTTAACAGTTTATTT+GGG - Chr3:78440855-78440874 MsG0380016053.01.T01:CDS 25.0%
! TAGATGTATAAAATGTCCAA+TGG - Chr3:78442634-78442653 MsG0380016053.01.T01:five_prime_UTR 25.0%
! TCATGAGTATTAATGAGAAT+AGG - Chr3:78440289-78440308 MsG0380016053.01.T01:CDS 25.0%
! TGGATTTAACAGTTTATTTG+GGG - Chr3:78440856-78440875 MsG0380016053.01.T01:CDS 25.0%
! TGTAGTACTATGTATAGAAT+AGG - Chr3:78442694-78442713 MsG0380016053.01.T01:five_prime_UTR 25.0%
! TTATATATTAGCATAAGCAC+TGG - Chr3:78441008-78441027 MsG0380016053.01.T01:intron 25.0%
! TTTGCAGTAATACAAAGATT+CGG + Chr3:78441413-78441432 None:intergenic 25.0%
!! ATACCAATTCATTTGTTTCT+TGG - Chr3:78439804-78439823 MsG0380016053.01.T01:intron 25.0%
!! TCAGACCTTATATCTTTTAA+GGG + Chr3:78441755-78441774 None:intergenic 25.0%
!! TTCAGACCTTATATCTTTTA+AGG + Chr3:78441756-78441775 None:intergenic 25.0%
!!! CTTTTTTGTTCTTGAAGAAA+GGG + Chr3:78442259-78442278 None:intergenic 25.0%
!!! GATATTTTAGAGTTCAGTTT+CGG + Chr3:78438925-78438944 None:intergenic 25.0%
!!! GTTTCTTTCCTTTTAAGAAA+TGG + Chr3:78442153-78442172 None:intergenic 25.0%
!!! TGTTTTTGTTGTTTTGATGA+TGG - Chr3:78439503-78439522 MsG0380016053.01.T01:intron 25.0%
!!! TTTTCTGGTATTAATGAAGA+CGG - Chr3:78441455-78441474 MsG0380016053.01.T01:CDS 25.0%
ACGCAATCAAATGATAGAAA+AGG + Chr3:78440974-78440993 None:intergenic 30.0%
AGAAGACTTCTGAATTCTTA+TGG + Chr3:78442428-78442447 None:intergenic 30.0%
AGAGGAAAAACACATTCAAT+AGG + Chr3:78441690-78441709 None:intergenic 30.0%
ATAGCTGAATTTCAATACTG+TGG + Chr3:78439840-78439859 None:intergenic 30.0%
ATGATTAAGCTATTGCTCTA+TGG + Chr3:78440551-78440570 None:intergenic 30.0%
ATTGCTTAGAAAATCTTGCA+AGG + Chr3:78439589-78439608 None:intergenic 30.0%
CATTAATACCAGAAAAGGAA+AGG + Chr3:78441451-78441470 None:intergenic 30.0%
CCTTTCTTCAAGAACAAAAA+AGG - Chr3:78442257-78442276 MsG0380016053.01.T01:intron 30.0%
GGATTTCAATTATAAACCTC+AGG + Chr3:78440635-78440654 None:intergenic 30.0%
GTCACAAACAAAACTTGTAT+TGG + Chr3:78442757-78442776 None:intergenic 30.0%
GTCTTCATTAATACCAGAAA+AGG + Chr3:78441456-78441475 None:intergenic 30.0%
TAAGAATTCAGAAGTCTTCT+AGG - Chr3:78442428-78442447 MsG0380016053.01.T01:intron 30.0%
TAGAGCAATAGCTTAATCAT+TGG - Chr3:78440551-78440570 MsG0380016053.01.T01:intron 30.0%
TGAAAAGAGTTTCTAAACAG+TGG - Chr3:78441772-78441791 MsG0380016053.01.T01:five_prime_UTR 30.0%
TGACTTAAGACAAACTGTAA+AGG - Chr3:78442660-78442679 MsG0380016053.01.T01:five_prime_UTR 30.0%
TGCTAACAAGTTAGGAATTA+CGG - Chr3:78441856-78441875 MsG0380016053.01.T01:intron 30.0%
TTGCTTAGAAAATCTTGCAA+GGG + Chr3:78439588-78439607 None:intergenic 30.0%
TTTCTATCATTTGATTGCGT+TGG - Chr3:78440974-78440993 MsG0380016053.01.T01:intron 30.0%
! AACTGTCTTGATTTTATCTC+AGG - Chr3:78442228-78442247 MsG0380016053.01.T01:intron 30.0%
! CTGTTTTCATAAGCTTATCT+TGG + Chr3:78441112-78441131 None:intergenic 30.0%
! GAGAACTATGATGAACTTTT+TGG - Chr3:78440794-78440813 MsG0380016053.01.T01:CDS 30.0%
! GCGTTTTTCATTCAAAAAAG+AGG + Chr3:78441708-78441727 None:intergenic 30.0%
! GGTGGATTTAACAGTTTATT+TGG - Chr3:78440854-78440873 MsG0380016053.01.T01:CDS 30.0%
! GGTTACATATGTGATTTTTG+TGG - Chr3:78439919-78439938 MsG0380016053.01.T01:intron 30.0%
! TTCATGAGTCTATGAGTTTT+TGG - Chr3:78439398-78439417 MsG0380016053.01.T01:three_prime_UTR 30.0%
!! CTATGATGAACTTTTTGGTA+TGG - Chr3:78440799-78440818 MsG0380016053.01.T01:CDS 30.0%
!! TCAAATATCACCCATTTTTC+AGG + Chr3:78442183-78442202 None:intergenic 30.0%
!! TCTGAAGAGCTTTTTGAAAA+TGG - Chr3:78440833-78440852 MsG0380016053.01.T01:CDS 30.0%
!! TTCAGTTTTAGTGCTCAATA+TGG + Chr3:78441390-78441409 None:intergenic 30.0%
!!! ATACAAGTTTTGTTTGTGAC+TGG - Chr3:78442757-78442776 MsG0380016053.01.T01:five_prime_UTR 30.0%
!!! CCTTTTTTGTTCTTGAAGAA+AGG + Chr3:78442260-78442279 None:intergenic 30.0%
!!! GTTTGTTGGTTTTTTATTGG+TGG - Chr3:78439476-78439495 MsG0380016053.01.T01:intron 30.0%
ACAGAGCTTATGTCTACTAT+TGG - Chr3:78441213-78441232 MsG0380016053.01.T01:CDS 35.0%
AGACCATATCGAAGAAAGTT+CGG + Chr3:78440214-78440233 None:intergenic 35.0%
AGCATTAGCATCTTGACAAT+TGG + Chr3:78440906-78440925 None:intergenic 35.0%
AGCTTATCTTGGAGAACTTA+TGG + Chr3:78441101-78441120 None:intergenic 35.0%
ATGTAGTTTCACTCAGAGAA+GGG + Chr3:78440251-78440270 None:intergenic 35.0%
ATTATACACTCAGTAGCTTC+TGG + Chr3:78442124-78442143 None:intergenic 35.0%
ATTCATTGGTAGATCCATCT+GGG + Chr3:78440449-78440468 None:intergenic 35.0%
CAAAGATGGTAATCCAAACA+CGG + Chr3:78442371-78442390 None:intergenic 35.0%
CACTTTGTCAGAATTGTGAT+TGG - Chr3:78440112-78440131 MsG0380016053.01.T01:CDS 35.0%
CGATTTCGATATGGATGAAA+TGG - Chr3:78440760-78440779 MsG0380016053.01.T01:CDS 35.0%
CTACATCTTCCAATCATAAG+AGG - Chr3:78440151-78440170 MsG0380016053.01.T01:CDS 35.0%
CTCTACTTAAAATCAACCGA+AGG + Chr3:78441270-78441289 None:intergenic 35.0%
CTGCCAAGAAACAAATGAAT+TGG + Chr3:78439810-78439829 None:intergenic 35.0%
GAATGAAAAACGCCTAACAA+GGG - Chr3:78441715-78441734 MsG0380016053.01.T01:CDS 35.0%
GACAAGATCTGTAAGCAAAA+GGG + Chr3:78439084-78439103 None:intergenic 35.0%
GAGAAAATTACCTTAAGGCA+AGG + Chr3:78439116-78439135 None:intergenic 35.0%
GCATTACTCACTTTACAAAC+TGG - Chr3:78441794-78441813 MsG0380016053.01.T01:five_prime_UTR 35.0%
GCTAACAAGTTAGGAATTAC+GGG - Chr3:78441857-78441876 MsG0380016053.01.T01:intron 35.0%
TACCAATGAATGTGTACCAA+AGG - Chr3:78440458-78440477 MsG0380016053.01.T01:intron 35.0%
TACCATCTTTGCGTTAAACT+TGG - Chr3:78442380-78442399 MsG0380016053.01.T01:intron 35.0%
TACCTTTGGTACACATTCAT+TGG + Chr3:78440463-78440482 None:intergenic 35.0%
TAGTAGACATAAGCTCTGTT+TGG + Chr3:78441212-78441231 None:intergenic 35.0%
TATGTTCAGGGTTCATCAAT+TGG - Chr3:78441314-78441333 MsG0380016053.01.T01:CDS 35.0%
TCTCTTTGCTTATCTATCTC+AGG - Chr3:78438891-78438910 MsG0380016053.01.T02:three_prime_UTR 35.0%
TCTGAAGGTTTCACAGTTAT+AGG - Chr3:78439873-78439892 MsG0380016053.01.T01:intron 35.0%
TGAATGAAAAACGCCTAACA+AGG - Chr3:78441714-78441733 MsG0380016053.01.T01:CDS 35.0%
TGCTTAGAAAATCTTGCAAG+GGG + Chr3:78439587-78439606 None:intergenic 35.0%
TTGTCTTAAGTCAGATCCAT+TGG + Chr3:78442653-78442672 None:intergenic 35.0%
! AATTGTGATTGGTTAGGTCA+TGG - Chr3:78440123-78440142 MsG0380016053.01.T01:CDS 35.0%
! ATCTGTAAGCAAAAGGGTTT+TGG + Chr3:78439078-78439097 None:intergenic 35.0%
! CAATTCATTTGTTTCTTGGC+AGG - Chr3:78439808-78439827 MsG0380016053.01.T01:intron 35.0%
! GATGATGATGATGATCTGTA+TGG - Chr3:78440737-78440756 MsG0380016053.01.T01:intron 35.0%
! GTGATTTTTGTGGAGATCAA+CGG - Chr3:78439929-78439948 MsG0380016053.01.T01:intron 35.0%
! TCAGACACGTTCTGATTTTT+CGG + Chr3:78440330-78440349 None:intergenic 35.0%
! TGTCAGAATTGTGATTGGTT+AGG - Chr3:78440117-78440136 MsG0380016053.01.T01:CDS 35.0%
!! CTAACTCATTGTTGATTTCC+AGG - Chr3:78440679-78440698 MsG0380016053.01.T01:intron 35.0%
!! GAAGAGCTTTTTGAAAATGG+TGG - Chr3:78440836-78440855 MsG0380016053.01.T01:CDS 35.0%
!! TAATGAGAATAGGAGTGCTT+GGG - Chr3:78440299-78440318 MsG0380016053.01.T01:CDS 35.0%
!! TCCTAACTTGTTAGCAAAGA+CGG + Chr3:78441852-78441871 None:intergenic 35.0%
!! TTAATGAGAATAGGAGTGCT+TGG - Chr3:78440298-78440317 MsG0380016053.01.T01:CDS 35.0%
AAAGCTCTTCAGAATGAGTG+AGG + Chr3:78440826-78440845 None:intergenic 40.0%
AAGCTCTTCAGAATGAGTGA+GGG + Chr3:78440825-78440844 None:intergenic 40.0%
ACATGACAAACATGGTGCAT+TGG + Chr3:78442470-78442489 None:intergenic 40.0%
ACCGTCTTTGCTAACAAGTT+AGG - Chr3:78441848-78441867 MsG0380016053.01.T01:intron 40.0%
ACTACATGTGAGCAAGAACT+AGG - Chr3:78440264-78440283 MsG0380016053.01.T01:CDS 40.0%
AGAAAAGGAAAGGCTCGATT+GGG + Chr3:78441441-78441460 None:intergenic 40.0%
AGCTACTGATCTACCTGATT+TGG - Chr3:78440359-78440378 MsG0380016053.01.T01:intron 40.0%
AGCTTCTTCAATGCTTCTCA+TGG - Chr3:78441505-78441524 MsG0380016053.01.T01:CDS 40.0%
CAAACGATCAATTGCTACTC+AGG - Chr3:78440174-78440193 MsG0380016053.01.T01:CDS 40.0%
CATCATCATCACTTGCTTCA+GGG + Chr3:78440727-78440746 None:intergenic 40.0%
CATGTAGTTTCACTCAGAGA+AGG + Chr3:78440252-78440271 None:intergenic 40.0%
CATTCATTGGTAGATCCATC+TGG + Chr3:78440450-78440469 None:intergenic 40.0%
CTGCTTCTTTCTTTGCTTTC+AGG - Chr3:78439015-78439034 MsG0380016053.01.T01:three_prime_UTR 40.0%
GATCGTTTGCCTCTTATGAT+TGG + Chr3:78440163-78440182 None:intergenic 40.0%
GATTTGGATAAGTCTTTCGC+CGG - Chr3:78440375-78440394 MsG0380016053.01.T01:intron 40.0%
GCGAAAGACTTATCCAAATC+AGG + Chr3:78440375-78440394 None:intergenic 40.0%
GCTCAAAGGGTCATAATCAT+AGG + Chr3:78442097-78442116 None:intergenic 40.0%
GCTTCTTCAATGCTTCTCAT+GGG - Chr3:78441506-78441525 MsG0380016053.01.T01:CDS 40.0%
GGACAAGATCTGTAAGCAAA+AGG + Chr3:78439085-78439104 None:intergenic 40.0%
TAAACGAGTTTCACTACCTG+AGG - Chr3:78440616-78440635 MsG0380016053.01.T01:intron 40.0%
TATAGTCACGTCTAGAAGTG+CGG - Chr3:78442497-78442516 MsG0380016053.01.T01:intron 40.0%
TCAGGACAAGTGTTTAACCA+AGG + Chr3:78441539-78441558 None:intergenic 40.0%
TCATCATCATCACTTGCTTC+AGG + Chr3:78440728-78440747 None:intergenic 40.0%
TCTGGTATTAATGAAGACGG+TGG - Chr3:78441458-78441477 MsG0380016053.01.T01:CDS 40.0%
TCTGTATGGCGATTTCGATA+TGG - Chr3:78440751-78440770 MsG0380016053.01.T01:intron 40.0%
TGCCAAGTTTAACGCAAAGA+TGG + Chr3:78442385-78442404 None:intergenic 40.0%
TGTAGTTGTAGCTCATTCTC+AGG + Chr3:78441557-78441576 None:intergenic 40.0%
! TAGTGCTGTTATGCGATACA+AGG - Chr3:78441592-78441611 MsG0380016053.01.T01:CDS 40.0%
!! CAAACATGGTGCATTGGTTA+AGG + Chr3:78442464-78442483 None:intergenic 40.0%
AAAAACGCCTAACAAGGGTG+GGG - Chr3:78441720-78441739 MsG0380016053.01.T01:CDS 45.0%
AACCCAGGACATGACAAACA+TGG + Chr3:78442478-78442497 None:intergenic 45.0%
AATCCAAACACGGTGCTTGA+AGG + Chr3:78442361-78442380 None:intergenic 45.0%
ACGCGGTTCTTTGCTTGATT+CGG + Chr3:78440415-78440434 None:intergenic 45.0%
AGACTGTTTGGGAGAGCTTA+TGG - Chr3:78441033-78441052 MsG0380016053.01.T01:intron 45.0%
AGCTTAATCATTGGCGAAGC+AGG - Chr3:78440560-78440579 MsG0380016053.01.T01:intron 45.0%
ATATGCCTCTCGCAAGGAAA+GGG - Chr3:78442023-78442042 MsG0380016053.01.T01:intron 45.0%
ATCCAAACACGGTGCTTGAA+GGG + Chr3:78442360-78442379 None:intergenic 45.0%
ATCGCATAACAGCACTACAG+CGG + Chr3:78441589-78441608 None:intergenic 45.0%
ATGCAGTTCACAACCTGCTT+TGG - Chr3:78440065-78440084 MsG0380016053.01.T01:CDS 45.0%
ATTAATGAAGACGGTGGTGC+TGG - Chr3:78441464-78441483 MsG0380016053.01.T01:CDS 45.0%
ATTGGAATCTCCAGCAGACA+TGG + Chr3:78440888-78440907 None:intergenic 45.0%
CAAGACAGTTCGTCATTGCA+CGG + Chr3:78442218-78442237 None:intergenic 45.0%
CACCATGTTTGTCATGTCCT+GGG - Chr3:78442473-78442492 MsG0380016053.01.T01:intron 45.0%
CAGAAAAGGAAAGGCTCGAT+TGG + Chr3:78441442-78441461 None:intergenic 45.0%
CCTTAAGGCAAGGAAAACAC+AGG + Chr3:78439106-78439125 None:intergenic 45.0%
CCTTGAATGTCTTCGAGCAA+GGG + Chr3:78440028-78440047 None:intergenic 45.0%
GAAAAACGCCTAACAAGGGT+GGG - Chr3:78441719-78441738 MsG0380016053.01.T01:CDS 45.0%
GAAGGACAGAGAATCGGATT+CGG + Chr3:78442313-78442332 None:intergenic 45.0%
GCATGCATGCTGCTCTATAT+TGG - Chr3:78442724-78442743 MsG0380016053.01.T01:five_prime_UTR 45.0%
GCTGGAGACTATCAAGATTG+TGG - Chr3:78441482-78441501 MsG0380016053.01.T01:CDS 45.0%
GGACAAGTGTTTAACCAAGG+AGG + Chr3:78441536-78441555 None:intergenic 45.0%
GTTCACAACCTGCTTTGGTT+AGG - Chr3:78440070-78440089 MsG0380016053.01.T01:CDS 45.0%
TCAAGATGCTAATGCTGCTG+AGG - Chr3:78440910-78440929 MsG0380016053.01.T01:CDS 45.0%
TCAGAACACCTAACCAAAGC+AGG + Chr3:78440081-78440100 None:intergenic 45.0%
TCCTTGAATGTCTTCGAGCA+AGG + Chr3:78440029-78440048 None:intergenic 45.0%
TCTAGACGTGACTATAACCC+AGG + Chr3:78442493-78442512 None:intergenic 45.0%
TGAAAAACGCCTAACAAGGG+TGG - Chr3:78441718-78441737 MsG0380016053.01.T01:CDS 45.0%
TTGGATATGCTTGGCAGTGA+AGG + Chr3:78442331-78442350 None:intergenic 45.0%
TTGTAGCAGGACAGTATACC+TGG + Chr3:78440700-78440719 None:intergenic 45.0%
! ACACTCAGTAGCTTCTGGTT+TGG + Chr3:78442119-78442138 None:intergenic 45.0%
! CAATCGAGCCTTTCCTTTTC+TGG - Chr3:78441440-78441459 MsG0380016053.01.T01:CDS 45.0%
! CCTGTGTTTTCCTTGCCTTA+AGG - Chr3:78439103-78439122 MsG0380016053.01.T01:three_prime_UTR 45.0%
!! AAGCACTGGTGAGACTGTTT+GGG - Chr3:78441022-78441041 MsG0380016053.01.T01:intron 45.0%
!! AGCTTCTGGTTTGGCTCAAA+GGG + Chr3:78442110-78442129 None:intergenic 45.0%
!! TAAGCACTGGTGAGACTGTT+TGG - Chr3:78441021-78441040 MsG0380016053.01.T01:intron 45.0%
!! TAGCTTCTGGTTTGGCTCAA+AGG + Chr3:78442111-78442130 None:intergenic 45.0%
!! TTTGCTTGATTCGGGCTTTG+AGG + Chr3:78440406-78440425 None:intergenic 45.0%
AAGAAAGTTCGGCCGACGAA+GGG + Chr3:78440203-78440222 None:intergenic 50.0%
AGTGAGATATGCCTCTCGCA+AGG - Chr3:78442017-78442036 MsG0380016053.01.T01:intron 50.0%
ATCTGAGCGACAGTACACCA+TGG + Chr3:78439956-78439975 None:intergenic 50.0%
CATTGGTAGATCCATCTGGG+CGG + Chr3:78440446-78440465 None:intergenic 50.0%
CCCTTGCTCGAAGACATTCA+AGG - Chr3:78440025-78440044 MsG0380016053.01.T01:intron 50.0%
CGCGGTTCTTTGCTTGATTC+GGG + Chr3:78440414-78440433 None:intergenic 50.0%
CGGCCGAACTTTCTTCGATA+TGG - Chr3:78440208-78440227 MsG0380016053.01.T01:CDS 50.0%
GATATGCCTCTCGCAAGGAA+AGG - Chr3:78442022-78442041 MsG0380016053.01.T01:intron 50.0%
GCACCATGTTTGTCATGTCC+TGG - Chr3:78442472-78442491 MsG0380016053.01.T01:intron 50.0%
GCTTCAGGGCAATTTGTAGC+AGG + Chr3:78440713-78440732 None:intergenic 50.0%
GGCAGTGAAGGACAGAGAAT+CGG + Chr3:78442319-78442338 None:intergenic 50.0%
GGGGACACTTTGGATATGCT+TGG + Chr3:78442340-78442359 None:intergenic 50.0%
GTCATAATCATAGGCCTCGC+CGG + Chr3:78442088-78442107 None:intergenic 50.0%
TCCAAACACGGTGCTTGAAG+GGG + Chr3:78442359-78442378 None:intergenic 50.0%
TTCTCATGGGAGAACCTCCT+TGG - Chr3:78441519-78441538 MsG0380016053.01.T01:CDS 50.0%
TTGTGGAGATCAACGGTCCA+TGG - Chr3:78439936-78439955 MsG0380016053.01.T01:intron 50.0%
!! AAGGGCCGGTTTGTTAAAGC+CGG - Chr3:78442066-78442085 MsG0380016053.01.T01:intron 50.0%
!! TTCGGGCTTTGAGGATGTAC+CGG + Chr3:78440397-78440416 None:intergenic 50.0%
AGGAAAGGGCTGATGTCCGA+AGG - Chr3:78442037-78442056 MsG0380016053.01.T01:intron 55.0%
AGTTCGTCCCCACCCTTGTT+AGG + Chr3:78441730-78441749 None:intergenic 55.0%
ATCAGCCCTTTCCTTGCGAG+AGG + Chr3:78442031-78442050 None:intergenic 55.0%
GAAGAAAGTTCGGCCGACGA+AGG + Chr3:78440204-78440223 None:intergenic 55.0%
GGTGCTTGAAGGGGACACTT+TGG + Chr3:78442350-78442369 None:intergenic 55.0%
GGTGTACTGTCGCTCAGATG+CGG - Chr3:78439957-78439976 MsG0380016053.01.T01:intron 55.0%
! CTACTCAGGTTGCCCTTCGT+CGG - Chr3:78440188-78440207 MsG0380016053.01.T01:CDS 55.0%
! TCCCCTTCAAGCACCGTGTT+TGG - Chr3:78442355-78442374 MsG0380016053.01.T01:intron 55.0%
!! CCTCGCCGGCTTTAACAAAC+CGG + Chr3:78442074-78442093 None:intergenic 55.0%
GATGCTGCAGTGCTGCATGC+TGG + Chr3:78441359-78441378 None:intergenic 60.0%
GGGGCAAAAGCCATGTCTGC+TGG - Chr3:78440875-78440894 MsG0380016053.01.T01:CDS 60.0%
! GATGTCCGAAGGCGCGTGAA+GGG - Chr3:78442048-78442067 MsG0380016053.01.T01:intron 60.0%
! TGATGTCCGAAGGCGCGTGA+AGG - Chr3:78442047-78442066 MsG0380016053.01.T01:intron 60.0%
!! CCGGTTTGTTAAAGCCGGCG+AGG - Chr3:78442071-78442090 MsG0380016053.01.T01:intron 60.0%
CGTATGCTCGACCGCCCAGA+TGG - Chr3:78440432-78440451 MsG0380016053.01.T01:intron 65.0%
TCTGGGCGGTCGAGCATACG+CGG + Chr3:78440432-78440451 None:intergenic 65.0%
ACCGGCCCTTCACGCGCCTT+CGG + Chr3:78442056-78442075 None:intergenic 70.0%
! TCCGAAGGCGCGTGAAGGGC+CGG - Chr3:78442052-78442071 MsG0380016053.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78438882 78442802 78438882 ID=MsG0380016053.01;Name=MsG0380016053.01
Chr3 mRNA 78438907 78442802 78438907 ID=MsG0380016053.01.T01;Parent=MsG0380016053.01;Name=MsG0380016053.01.T01;_AED=0.24;_eAED=0.24;_QI=329|1|1|1|0.6|0.33|6|530|411
Chr3 exon 78438907 78439434 78438907 ID=MsG0380016053.01.T01:exon:17413;Parent=MsG0380016053.01.T01
Chr3 exon 78439548 78439679 78439548 ID=MsG0380016053.01.T01:exon:17412;Parent=MsG0380016053.01.T01
Chr3 five_prime_UTR 78442560 78442802 78442560 ID=MsG0380016053.01.T01:five_prime_utr;Parent=MsG0380016053.01.T01
Chr3 five_prime_UTR 78441769 78441854 78441769 ID=MsG0380016053.01.T01:five_prime_utr;Parent=MsG0380016053.01.T01
Chr3 CDS 78441205 78441768 78441205 ID=MsG0380016053.01.T01:cds;Parent=MsG0380016053.01.T01
Chr3 CDS 78440753 78440983 78440753 ID=MsG0380016053.01.T01:cds;Parent=MsG0380016053.01.T01
Chr3 CDS 78440051 78440361 78440051 ID=MsG0380016053.01.T01:cds;Parent=MsG0380016053.01.T01
Chr3 CDS 78439550 78439679 78439550 ID=MsG0380016053.01.T01:cds;Parent=MsG0380016053.01.T01
Chr3 three_prime_UTR 78439548 78439549 78439548 ID=MsG0380016053.01.T01:three_prime_utr;Parent=MsG0380016053.01.T01
Chr3 three_prime_UTR 78438907 78439434 78438907 ID=MsG0380016053.01.T01:three_prime_utr;Parent=MsG0380016053.01.T01
Chr3 mRNA 78438882 78442802 78438882 ID=MsG0380016053.01.T02;Parent=MsG0380016053.01;Name=MsG0380016053.01.T02;_AED=0.22;_eAED=0.22;_QI=329|1|1|1|0.75|0.6|5|668|411
Chr3 exon 78438882 78439679 78438882 ID=MsG0380016053.01.T02:exon:17414;Parent=MsG0380016053.01.T02
Chr3 five_prime_UTR 78442560 78442802 78442560 ID=MsG0380016053.01.T02:five_prime_utr;Parent=MsG0380016053.01.T02
Chr3 five_prime_UTR 78441769 78441854 78441769 ID=MsG0380016053.01.T02:five_prime_utr;Parent=MsG0380016053.01.T02
Chr3 CDS 78441205 78441768 78441205 ID=MsG0380016053.01.T02:cds;Parent=MsG0380016053.01.T02
Chr3 CDS 78440753 78440983 78440753 ID=MsG0380016053.01.T02:cds;Parent=MsG0380016053.01.T02
Chr3 CDS 78440051 78440361 78440051 ID=MsG0380016053.01.T02:cds;Parent=MsG0380016053.01.T02
Chr3 CDS 78439550 78439679 78439550 ID=MsG0380016053.01.T02:cds;Parent=MsG0380016053.01.T02
Chr3 three_prime_UTR 78438882 78439549 78438882 ID=MsG0380016053.01.T02:three_prime_utr;Parent=MsG0380016053.01.T02
Gene Sequence

>MsG0380016053.01.T01

ATGGGTTACATATGTGATTTTTGTGGAGATCAACGGTCCATGGTGTACTGTCGCTCAGATGCGGCTTGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCAGCAAATACCCTTGCTCGAAGACATTCAAGGACTCTTTTGTGTGAGAGATGCAGTTCACAACCTGCTTTGGTTAGGTGTTCTGAAGAGAAAGTTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAACTCTACATCTTCCAATCATAAGAGGCAAACGATCAATTGCTACTCAGGTTGCCCTTCGTCGGCCGAACTTTCTTCGATATGGTCTTTTGTGTTAGATATCCCTTCTCTGAGTGAAACTACATGTGAGCAAGAACTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTTGATCCGAAAAATCAGAACGTGTCTGATTCAGATAAAGCTACTGATCTACCTGATTTGGATAAGTCTTTCGCCGGTACATCCTCAAAGCCCGAATCAAGCAAAGAACCGCGTATGCTCGACCGCCCAGATGGATCTACCAATGAATGTGTACCAAAGGTATACTGTCCTGCTACAAATTGCCCTGAAGCAAGTGATGATGATGATGATCTGTATGGCGATTTCGATATGGATGAAATGGATATAAATATGGAGAACTATGATGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGTTTATTTGGGGCAAAAGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTAATGCTGCTGAGGGTTCATCAATTGGACATGTCAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGCACTAAAACTGAACCGAATCTTTGTATTACTGCAAAGCAATCCCAATCGAGCCTTTCCTTTTCTGGTATTAATGAAGACGGTGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCTGAGAATGAGCTACAACTACAATCTGCAAACCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAAAAGACACGCAAGTTTGACAAGAGAGTGAGATATGCCTCTCGCAAGGAAAGGGCTGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTTAAAGCCGGCGAGGCCTATGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA

>MsG0380016053.01.T02

ATGGGTTACATATGTGATTTTTGTGGAGATCAACGGTCCATGGTGTACTGTCGCTCAGATGCGGCTTGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCAGCAAATACCCTTGCTCGAAGACATTCAAGGACTCTTTTGTGTGAGAGATGCAGTTCACAACCTGCTTTGGTTAGGTGTTCTGAAGAGAAAGTTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAACTCTACATCTTCCAATCATAAGAGGCAAACGATCAATTGCTACTCAGGTTGCCCTTCGTCGGCCGAACTTTCTTCGATATGGTCTTTTGTGTTAGATATCCCTTCTCTGAGTGAAACTACATGTGAGCAAGAACTAGGTTTCATGAGTATTAATGAGAATAGGAGTGCTTGGGTTGATCCGAAAAATCAGAACGTGTCTGATTCAGATAAAGCTACTGATCTACCTGATTTGGATAAGTCTTTCGCCGGTACATCCTCAAAGCCCGAATCAAGCAAAGAACCGCGTATGCTCGACCGCCCAGATGGATCTACCAATGAATGTGTACCAAAGGTATACTGTCCTGCTACAAATTGCCCTGAAGCAAGTGATGATGATGATGATCTGTATGGCGATTTCGATATGGATGAAATGGATATAAATATGGAGAACTATGATGAACTTTTTGGTATGGCCCTCACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGTTTATTTGGGGCAAAAGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTAATGCTGCTGAGGGTTCATCAATTGGACATGTCAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGCACTAAAACTGAACCGAATCTTTGTATTACTGCAAAGCAATCCCAATCGAGCCTTTCCTTTTCTGGTATTAATGAAGACGGTGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCTGAGAATGAGCTACAACTACAATCTGCAAACCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAAAAGACACGCAAGTTTGACAAGAGAGTGAGATATGCCTCTCGCAAGGAAAGGGCTGATGTCCGAAGGCGCGTGAAGGGCCGGTTTGTTAAAGCCGGCGAGGCCTATGATTATGACCCTTTGAGCCAAACCAGAAGCTACTGA
Protein sequence

>MsG0380016053.01.T01

MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKVSLCQNCDWLGHGNSTSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKATDLPDLDKSFAGTSSKPESSKEPRMLDRPDGSTNECVPKVYCPATNCPEASDDDDDLYGDFDMDEMDINMENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY*

>MsG0380016053.01.T02

MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKVSLCQNCDWLGHGNSTSSNHKRQTINCYSGCPSSAELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKATDLPDLDKSFAGTSSKPESSKEPRMLDRPDGSTNECVPKVYCPATNCPEASDDDDDLYGDFDMDEMDINMENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDANAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY*