Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016060.01.T04 | XP_003601529.1 | 97.101 | 207 | 5 | 1 | 1 | 206 | 335 | 541 | 5.00E-140 | 412 |
| MsG0380016060.01.T01 | GAU18547.1 | 80.503 | 159 | 15 | 2 | 1 | 143 | 254 | 412 | 6.21E-83 | 259 |
| MsG0380016060.01.T02 | GAU18547.1 | 81.955 | 133 | 10 | 2 | 1 | 119 | 280 | 412 | 6.04E-66 | 215 |
| MsG0380016060.01.T05 | GAU18547.1 | 83.333 | 60 | 9 | 1 | 1 | 59 | 353 | 412 | 2.74E-24 | 103 |
| MsG0380016060.01.T03 | GAU18547.1 | 92.593 | 243 | 17 | 1 | 7 | 248 | 170 | 412 | 5.02E-165 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016060.01.T01 | Q8GYF4 | 63.522 | 159 | 42 | 2 | 1 | 143 | 384 | 542 | 3.21E-64 | 207 |
| MsG0380016060.01.T02 | A7KTC5 | 63.636 | 132 | 32 | 2 | 1 | 119 | 406 | 534 | 5.72E-49 | 166 |
| MsG0380016060.01.T03 | A7KTC5 | 74.793 | 242 | 58 | 1 | 7 | 248 | 296 | 534 | 7.82E-134 | 390 |
| MsG0380016060.01.T04 | A7KTC5 | 74.757 | 206 | 49 | 1 | 1 | 206 | 332 | 534 | 2.45E-110 | 328 |
| MsG0380016060.01.T05 | A7KTC5 | 52.542 | 59 | 25 | 1 | 1 | 59 | 479 | 534 | 1.89E-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016060.01.T01 | A0A2Z6MJV5 | 80.503 | 159 | 15 | 2 | 1 | 143 | 254 | 412 | 2.96e-83 | 259 |
| MsG0380016060.01.T02 | A0A2Z6MJV5 | 81.955 | 133 | 10 | 2 | 1 | 119 | 280 | 412 | 2.89e-66 | 215 |
| MsG0380016060.01.T03 | A0A2Z6MJV5 | 92.593 | 243 | 17 | 1 | 7 | 248 | 170 | 412 | 2.40e-165 | 473 |
| MsG0380016060.01.T05 | A0A2Z6MJV5 | 83.333 | 60 | 9 | 1 | 1 | 59 | 353 | 412 | 1.31e-24 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380016060.01 | MsG0380016061.01 | 0.863840 | 1.867976e-64 | 5.742886e-61 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016060.01.T04 | MTR_3g082700 | 97.101 | 207 | 5 | 1 | 1 | 206 | 335 | 541 | 6.05e-144 | 412 |
| MsG0380016060.01.T04 | MTR_1g074930 | 79.126 | 206 | 41 | 1 | 1 | 206 | 335 | 538 | 1.14e-117 | 345 |
| MsG0380016060.01.T04 | MTR_1g043200 | 78.947 | 190 | 40 | 0 | 1 | 190 | 335 | 524 | 9.29e-111 | 327 |
| MsG0380016060.01.T04 | MTR_1g043220 | 79.058 | 191 | 40 | 0 | 1 | 191 | 335 | 525 | 9.56e-111 | 327 |
| MsG0380016060.01.T04 | MTR_1g043290 | 76.382 | 199 | 45 | 1 | 1 | 199 | 335 | 531 | 1.56e-110 | 327 |
| MsG0380016060.01.T04 | MTR_1g069935 | 79.144 | 187 | 39 | 0 | 1 | 187 | 332 | 518 | 4.97e-108 | 320 |
| MsG0380016060.01.T04 | MTR_7g096880 | 75.980 | 204 | 49 | 0 | 1 | 204 | 330 | 533 | 2.39e-103 | 308 |
| MsG0380016060.01.T04 | MTR_7g096870 | 74.634 | 205 | 51 | 1 | 1 | 204 | 332 | 536 | 4.89e-101 | 302 |
| MsG0380016060.01.T04 | MTR_1g069930 | 69.802 | 202 | 60 | 1 | 1 | 202 | 333 | 533 | 1.80e-97 | 293 |
| MsG0380016060.01.T04 | MTR_1g074940 | 71.186 | 177 | 38 | 1 | 1 | 177 | 337 | 500 | 4.74e-85 | 261 |
| MsG0380016060.01.T04 | MTR_4g083960 | 55.897 | 195 | 74 | 5 | 2 | 192 | 326 | 512 | 5.43e-67 | 214 |
| MsG0380016060.01.T04 | MTR_5g068140 | 51.152 | 217 | 80 | 4 | 1 | 202 | 335 | 540 | 3.47e-62 | 202 |
| MsG0380016060.01.T04 | MTR_1g028600 | 51.485 | 202 | 87 | 2 | 1 | 202 | 330 | 520 | 3.14e-58 | 191 |
| MsG0380016060.01.T01 | MTR_3g082700 | 82.390 | 159 | 12 | 2 | 1 | 143 | 383 | 541 | 7.25e-78 | 240 |
| MsG0380016060.01.T01 | MTR_1g074930 | 70.886 | 158 | 29 | 2 | 1 | 143 | 383 | 538 | 2.10e-72 | 226 |
| MsG0380016060.01.T01 | MTR_1g043220 | 68.531 | 143 | 30 | 1 | 1 | 128 | 383 | 525 | 3.51e-64 | 204 |
| MsG0380016060.01.T01 | MTR_1g043200 | 68.310 | 142 | 30 | 1 | 1 | 127 | 383 | 524 | 6.20e-64 | 204 |
| MsG0380016060.01.T01 | MTR_1g043290 | 65.563 | 151 | 35 | 2 | 1 | 136 | 383 | 531 | 9.69e-64 | 203 |
| MsG0380016060.01.T01 | MTR_1g069935 | 68.345 | 139 | 29 | 1 | 1 | 124 | 380 | 518 | 1.16e-61 | 197 |
| MsG0380016060.01.T01 | MTR_7g096870 | 64.000 | 150 | 38 | 2 | 8 | 141 | 387 | 536 | 2.86e-60 | 194 |
| MsG0380016060.01.T01 | MTR_7g096880 | 66.667 | 156 | 37 | 1 | 1 | 141 | 378 | 533 | 2.33e-59 | 192 |
| MsG0380016060.01.T01 | MTR_1g074940 | 74.138 | 116 | 28 | 1 | 1 | 114 | 385 | 500 | 7.94e-56 | 182 |
| MsG0380016060.01.T01 | MTR_1g069930 | 59.740 | 154 | 46 | 2 | 1 | 139 | 381 | 533 | 1.45e-54 | 179 |
| MsG0380016060.01.T01 | MTR_5g068140 | 56.693 | 127 | 46 | 2 | 20 | 139 | 416 | 540 | 9.26e-41 | 143 |
| MsG0380016060.01.T01 | MTR_4g083960 | 53.472 | 144 | 48 | 5 | 1 | 129 | 373 | 512 | 6.00e-40 | 140 |
| MsG0380016060.01.T01 | MTR_1g028600 | 48.551 | 138 | 65 | 2 | 7 | 139 | 384 | 520 | 1.82e-38 | 136 |
| MsG0380016060.01.T02 | MTR_3g082700 | 81.955 | 133 | 10 | 2 | 1 | 119 | 409 | 541 | 5.15e-60 | 192 |
| MsG0380016060.01.T02 | MTR_1g074930 | 69.697 | 132 | 25 | 2 | 1 | 119 | 409 | 538 | 1.96e-55 | 181 |
| MsG0380016060.01.T02 | MTR_7g096870 | 63.359 | 131 | 34 | 2 | 1 | 117 | 406 | 536 | 1.05e-48 | 162 |
| MsG0380016060.01.T02 | MTR_1g043220 | 67.521 | 117 | 25 | 1 | 1 | 104 | 409 | 525 | 7.37e-48 | 160 |
| MsG0380016060.01.T02 | MTR_1g043200 | 67.241 | 116 | 25 | 1 | 1 | 103 | 409 | 524 | 8.48e-48 | 160 |
| MsG0380016060.01.T02 | MTR_1g043290 | 64.000 | 125 | 30 | 2 | 1 | 112 | 409 | 531 | 2.22e-47 | 159 |
| MsG0380016060.01.T02 | MTR_1g069935 | 66.372 | 113 | 25 | 1 | 1 | 100 | 406 | 518 | 3.03e-45 | 153 |
| MsG0380016060.01.T02 | MTR_1g074940 | 76.667 | 90 | 21 | 0 | 1 | 90 | 411 | 500 | 1.56e-44 | 151 |
| MsG0380016060.01.T02 | MTR_7g096880 | 66.154 | 130 | 31 | 1 | 1 | 117 | 404 | 533 | 4.08e-44 | 150 |
| MsG0380016060.01.T02 | MTR_1g069930 | 58.594 | 128 | 39 | 2 | 1 | 115 | 407 | 533 | 4.24e-41 | 142 |
| MsG0380016060.01.T02 | MTR_5g068140 | 59.167 | 120 | 42 | 2 | 1 | 115 | 423 | 540 | 1.24e-40 | 141 |
| MsG0380016060.01.T02 | MTR_1g028600 | 51.695 | 118 | 54 | 1 | 1 | 115 | 403 | 520 | 9.06e-35 | 125 |
| MsG0380016060.01.T02 | MTR_4g083960 | 55.652 | 115 | 37 | 3 | 1 | 105 | 402 | 512 | 1.37e-33 | 122 |
| MsG0380016060.01.T05 | MTR_3g082700 | 81.667 | 60 | 10 | 1 | 1 | 59 | 482 | 541 | 1.11e-19 | 80.5 |
| MsG0380016060.01.T05 | MTR_1g074930 | 64.407 | 59 | 19 | 1 | 1 | 59 | 482 | 538 | 1.98e-18 | 77.0 |
| MsG0380016060.01.T05 | MTR_7g096870 | 60.345 | 58 | 22 | 1 | 1 | 57 | 479 | 536 | 3.80e-15 | 67.8 |
| MsG0380016060.01.T05 | MTR_1g069935 | 67.500 | 40 | 13 | 0 | 1 | 40 | 479 | 518 | 6.82e-12 | 58.5 |
| MsG0380016060.01.T05 | MTR_5g068140 | 51.852 | 54 | 24 | 1 | 2 | 55 | 489 | 540 | 1.75e-11 | 57.4 |
| MsG0380016060.01.T05 | MTR_1g043290 | 51.923 | 52 | 23 | 1 | 1 | 52 | 482 | 531 | 2.46e-11 | 57.0 |
| MsG0380016060.01.T05 | MTR_1g043220 | 56.818 | 44 | 19 | 0 | 1 | 44 | 482 | 525 | 3.20e-11 | 56.6 |
| MsG0380016060.01.T05 | MTR_1g043200 | 55.814 | 43 | 19 | 0 | 1 | 43 | 482 | 524 | 6.22e-11 | 55.8 |
| MsG0380016060.01.T03 | MTR_3g082700 | 89.434 | 265 | 11 | 2 | 1 | 248 | 277 | 541 | 6.17e-162 | 459 |
| MsG0380016060.01.T03 | MTR_1g074930 | 78.099 | 242 | 51 | 1 | 7 | 248 | 299 | 538 | 2.49e-141 | 407 |
| MsG0380016060.01.T03 | MTR_1g043220 | 78.855 | 227 | 48 | 0 | 7 | 233 | 299 | 525 | 1.60e-135 | 392 |
| MsG0380016060.01.T03 | MTR_1g043200 | 78.761 | 226 | 48 | 0 | 7 | 232 | 299 | 524 | 4.19e-135 | 391 |
| MsG0380016060.01.T03 | MTR_1g043290 | 76.596 | 235 | 53 | 1 | 7 | 241 | 299 | 531 | 4.28e-135 | 391 |
| MsG0380016060.01.T03 | MTR_1g069935 | 78.027 | 223 | 49 | 0 | 7 | 229 | 296 | 518 | 5.53e-130 | 377 |
| MsG0380016060.01.T03 | MTR_7g096880 | 76.667 | 240 | 56 | 0 | 7 | 246 | 294 | 533 | 8.30e-128 | 372 |
| MsG0380016060.01.T03 | MTR_7g096870 | 75.104 | 241 | 59 | 1 | 7 | 246 | 296 | 536 | 5.88e-125 | 365 |
| MsG0380016060.01.T03 | MTR_1g069930 | 66.387 | 238 | 79 | 1 | 7 | 244 | 297 | 533 | 1.66e-113 | 336 |
| MsG0380016060.01.T03 | MTR_1g074940 | 71.362 | 213 | 48 | 1 | 7 | 219 | 301 | 500 | 4.60e-107 | 319 |
| MsG0380016060.01.T03 | MTR_4g083960 | 52.743 | 237 | 98 | 6 | 2 | 234 | 286 | 512 | 2.76e-78 | 245 |
| MsG0380016060.01.T03 | MTR_5g068140 | 52.569 | 253 | 94 | 4 | 7 | 244 | 299 | 540 | 8.12e-78 | 245 |
| MsG0380016060.01.T03 | MTR_1g028600 | 51.029 | 243 | 108 | 2 | 2 | 244 | 289 | 520 | 4.08e-74 | 234 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016060.01.T04 | AT2G32830 | 73.430 | 207 | 54 | 1 | 1 | 206 | 336 | 542 | 7.06e-110 | 325 |
| MsG0380016060.01.T04 | AT3G54700 | 77.660 | 188 | 42 | 0 | 1 | 188 | 331 | 518 | 7.24e-107 | 317 |
| MsG0380016060.01.T04 | AT3G54700 | 77.660 | 188 | 42 | 0 | 1 | 188 | 331 | 518 | 7.24e-107 | 317 |
| MsG0380016060.01.T04 | AT2G38940 | 79.121 | 182 | 38 | 0 | 1 | 182 | 335 | 516 | 9.72e-105 | 311 |
| MsG0380016060.01.T04 | AT5G43360 | 76.064 | 188 | 45 | 0 | 1 | 188 | 334 | 521 | 2.01e-104 | 310 |
| MsG0380016060.01.T04 | AT5G43350 | 75.263 | 190 | 47 | 0 | 1 | 190 | 334 | 523 | 1.61e-103 | 308 |
| MsG0380016060.01.T04 | AT5G43370 | 77.297 | 185 | 42 | 0 | 1 | 185 | 334 | 518 | 4.03e-91 | 276 |
| MsG0380016060.01.T04 | AT5G43370 | 77.297 | 185 | 42 | 0 | 1 | 185 | 334 | 518 | 4.03e-91 | 276 |
| MsG0380016060.01.T04 | AT5G43340 | 57.216 | 194 | 70 | 1 | 1 | 194 | 335 | 515 | 1.40e-76 | 239 |
| MsG0380016060.01.T04 | AT1G20860 | 49.510 | 204 | 97 | 4 | 2 | 199 | 323 | 526 | 2.37e-60 | 197 |
| MsG0380016060.01.T04 | AT1G20860 | 49.510 | 204 | 97 | 4 | 2 | 199 | 375 | 578 | 5.45e-60 | 197 |
| MsG0380016060.01.T04 | AT1G76430 | 49.206 | 189 | 85 | 5 | 2 | 187 | 333 | 513 | 2.08e-54 | 181 |
| MsG0380016060.01.T04 | AT4G08895 | 51.587 | 126 | 29 | 1 | 1 | 126 | 37 | 130 | 4.35e-40 | 134 |
| MsG0380016060.01.T01 | AT2G32830 | 63.522 | 159 | 42 | 2 | 1 | 143 | 384 | 542 | 3.27e-65 | 207 |
| MsG0380016060.01.T01 | AT3G54700 | 67.143 | 140 | 31 | 1 | 1 | 125 | 379 | 518 | 1.79e-62 | 200 |
| MsG0380016060.01.T01 | AT3G54700 | 67.143 | 140 | 31 | 1 | 1 | 125 | 379 | 518 | 1.79e-62 | 200 |
| MsG0380016060.01.T01 | AT5G43350 | 67.883 | 137 | 29 | 1 | 1 | 122 | 382 | 518 | 9.34e-61 | 195 |
| MsG0380016060.01.T01 | AT2G38940 | 67.910 | 134 | 28 | 1 | 1 | 119 | 383 | 516 | 1.59e-59 | 192 |
| MsG0380016060.01.T01 | AT5G43360 | 64.286 | 140 | 35 | 1 | 1 | 125 | 382 | 521 | 7.21e-59 | 190 |
| MsG0380016060.01.T01 | AT5G43340 | 61.654 | 133 | 49 | 1 | 1 | 131 | 383 | 515 | 1.22e-55 | 182 |
| MsG0380016060.01.T01 | AT5G43370 | 68.613 | 137 | 28 | 1 | 1 | 122 | 382 | 518 | 6.56e-49 | 164 |
| MsG0380016060.01.T01 | AT5G43370 | 68.613 | 137 | 28 | 1 | 1 | 122 | 382 | 518 | 6.56e-49 | 164 |
| MsG0380016060.01.T01 | AT4G08895 | 49.194 | 124 | 34 | 1 | 7 | 130 | 59 | 153 | 3.75e-37 | 124 |
| MsG0380016060.01.T01 | AT1G20860 | 45.860 | 157 | 64 | 5 | 1 | 136 | 370 | 526 | 1.83e-36 | 131 |
| MsG0380016060.01.T01 | AT1G20860 | 45.860 | 157 | 64 | 5 | 1 | 136 | 422 | 578 | 3.20e-36 | 130 |
| MsG0380016060.01.T01 | AT1G76430 | 47.826 | 138 | 54 | 5 | 1 | 124 | 380 | 513 | 3.34e-33 | 122 |
| MsG0380016060.01.T02 | AT2G32830 | 62.406 | 133 | 36 | 2 | 1 | 119 | 410 | 542 | 2.97e-49 | 164 |
| MsG0380016060.01.T02 | AT5G43350 | 69.369 | 111 | 21 | 1 | 1 | 98 | 408 | 518 | 2.19e-47 | 159 |
| MsG0380016060.01.T02 | AT3G54700 | 66.667 | 114 | 25 | 1 | 1 | 101 | 405 | 518 | 5.79e-47 | 158 |
| MsG0380016060.01.T02 | AT3G54700 | 66.667 | 114 | 25 | 1 | 1 | 101 | 405 | 518 | 5.79e-47 | 158 |
| MsG0380016060.01.T02 | AT5G43360 | 65.789 | 114 | 26 | 1 | 1 | 101 | 408 | 521 | 1.36e-46 | 157 |
| MsG0380016060.01.T02 | AT2G38940 | 67.593 | 108 | 22 | 1 | 1 | 95 | 409 | 516 | 4.08e-44 | 150 |
| MsG0380016060.01.T02 | AT5G43340 | 59.813 | 107 | 43 | 0 | 1 | 107 | 409 | 515 | 2.69e-43 | 148 |
| MsG0380016060.01.T02 | AT5G43370 | 69.369 | 111 | 21 | 1 | 1 | 98 | 408 | 518 | 1.86e-35 | 127 |
| MsG0380016060.01.T02 | AT5G43370 | 69.369 | 111 | 21 | 1 | 1 | 98 | 408 | 518 | 1.86e-35 | 127 |
| MsG0380016060.01.T02 | AT1G20860 | 44.961 | 129 | 54 | 3 | 1 | 112 | 398 | 526 | 6.27e-29 | 109 |
| MsG0380016060.01.T02 | AT1G20860 | 44.961 | 129 | 54 | 3 | 1 | 112 | 450 | 578 | 6.96e-29 | 109 |
| MsG0380016060.01.T02 | AT1G76430 | 50.000 | 110 | 41 | 4 | 1 | 100 | 408 | 513 | 2.33e-26 | 102 |
| MsG0380016060.01.T02 | AT4G08895 | 46.667 | 105 | 25 | 1 | 2 | 106 | 80 | 153 | 4.57e-26 | 95.5 |
| MsG0380016060.01.T05 | AT2G32830 | 51.667 | 60 | 28 | 1 | 1 | 59 | 483 | 542 | 2.46e-13 | 62.4 |
| MsG0380016060.01.T05 | AT3G54700 | 65.854 | 41 | 14 | 0 | 1 | 41 | 478 | 518 | 6.98e-13 | 61.2 |
| MsG0380016060.01.T05 | AT3G54700 | 65.854 | 41 | 14 | 0 | 1 | 41 | 478 | 518 | 6.98e-13 | 61.2 |
| MsG0380016060.01.T05 | AT2G38940 | 71.429 | 35 | 10 | 0 | 1 | 35 | 482 | 516 | 4.54e-11 | 56.2 |
| MsG0380016060.01.T05 | AT5G43360 | 63.158 | 38 | 14 | 0 | 1 | 38 | 481 | 518 | 5.57e-11 | 55.8 |
| MsG0380016060.01.T05 | AT5G43340 | 48.936 | 47 | 24 | 0 | 1 | 47 | 469 | 515 | 6.39e-11 | 55.8 |
| MsG0380016060.01.T03 | AT2G32830 | 74.074 | 243 | 62 | 1 | 7 | 248 | 300 | 542 | 6.56e-134 | 388 |
| MsG0380016060.01.T03 | AT3G54700 | 78.125 | 224 | 49 | 0 | 7 | 230 | 295 | 518 | 1.65e-131 | 382 |
| MsG0380016060.01.T03 | AT3G54700 | 78.125 | 224 | 49 | 0 | 7 | 230 | 295 | 518 | 1.65e-131 | 382 |
| MsG0380016060.01.T03 | AT2G38940 | 79.358 | 218 | 45 | 0 | 7 | 224 | 299 | 516 | 1.69e-129 | 377 |
| MsG0380016060.01.T03 | AT5G43360 | 75.893 | 224 | 54 | 0 | 7 | 230 | 298 | 521 | 7.98e-127 | 369 |
| MsG0380016060.01.T03 | AT5G43350 | 76.923 | 221 | 51 | 0 | 7 | 227 | 298 | 518 | 6.91e-126 | 367 |
| MsG0380016060.01.T03 | AT5G43370 | 76.923 | 221 | 51 | 0 | 7 | 227 | 298 | 518 | 2.81e-113 | 335 |
| MsG0380016060.01.T03 | AT5G43370 | 76.923 | 221 | 51 | 0 | 7 | 227 | 298 | 518 | 2.81e-113 | 335 |
| MsG0380016060.01.T03 | AT5G43340 | 59.565 | 230 | 80 | 1 | 7 | 236 | 299 | 515 | 6.85e-99 | 298 |
| MsG0380016060.01.T03 | AT1G20860 | 46.154 | 247 | 126 | 5 | 1 | 241 | 281 | 526 | 1.66e-68 | 220 |
| MsG0380016060.01.T03 | AT1G20860 | 46.154 | 247 | 126 | 5 | 1 | 241 | 333 | 578 | 3.61e-68 | 220 |
| MsG0380016060.01.T03 | AT1G76430 | 44.828 | 232 | 115 | 6 | 1 | 229 | 292 | 513 | 3.01e-62 | 204 |
| MsG0380016060.01.T03 | AT4G08895 | 50.714 | 140 | 37 | 1 | 29 | 168 | 23 | 130 | 4.95e-46 | 151 |
Find 44 sgRNAs with CRISPR-Local
Find 54 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAACAAAAGTGGTTGAATT+TGG | 0.258019 | 3:+78513885 | None:intergenic |
| TAACCACAGCAAGCAAAATA+AGG | 0.261271 | 3:+78513691 | None:intergenic |
| GCACTTTGTGGAACTGTTCC+AGG | 0.320587 | 3:-78514092 | MsG0380016060.01.T03:CDS |
| GTGGAACTGTTCCAGGATAC+TGG | 0.336456 | 3:-78514085 | MsG0380016060.01.T03:CDS |
| GGAGCAATTATAGGTGCATT+TGG | 0.351461 | 3:-78513792 | MsG0380016060.01.T01:CDS |
| CTTGTATGCTTCACAAAGTA+AGG | 0.354005 | 3:-78513766 | MsG0380016060.01.T01:intron |
| ACTAAGAGAGAAAACAGAAT+TGG | 0.373524 | 3:-78513954 | MsG0380016060.01.T01:CDS |
| GGGAAAGCTGGAGCAATTAT+AGG | 0.377218 | 3:-78513801 | MsG0380016060.01.T01:CDS |
| TTTCTTGTGCCAGAAGCTAA+TGG | 0.378357 | 3:-78513645 | MsG0380016060.01.T01:CDS |
| CTTGCTGTGGTTAATTGTCT+TGG | 0.380235 | 3:-78513681 | MsG0380016060.01.T01:CDS |
| AAAGATATTTATAGTAGTAT+TGG | 0.386205 | 3:-78514188 | MsG0380016060.01.T03:CDS |
| GTGCAAGACAAGAACAGTTT+TGG | 0.386801 | 3:-78514269 | MsG0380016060.01.T03:CDS |
| GCAGGGTACCCTGCCGGTAT+TGG | 0.391646 | 3:-78513726 | MsG0380016060.01.T01:intron |
| TCCTCTGCAGCAGGGAAAGC+TGG | 0.401210 | 3:-78513813 | MsG0380016060.01.T01:CDS |
| ATCAACAAGCCTCTTCTAAT+AGG | 0.408237 | 3:-78513560 | MsG0380016060.01.T01:CDS |
| AGAAGCTAATGGAAAATCAT+TGG | 0.433339 | 3:-78513634 | MsG0380016060.01.T01:CDS |
| CATGTAGATCTCAACCTAGC+TGG | 0.457686 | 3:+78513846 | None:intergenic |
| ACAACGCTTATAGCACTTTG+TGG | 0.467494 | 3:-78514104 | MsG0380016060.01.T03:CDS |
| AACCACAGCAAGCAAAATAA+GGG | 0.472314 | 3:+78513692 | None:intergenic |
| TCCTTCATTCCAATACCGGC+AGG | 0.489126 | 3:+78513717 | None:intergenic |
| CTCTTAGTCCAATGATCATA+CGG | 0.495630 | 3:+78513969 | None:intergenic |
| TCGCTATTCCGTATGATCAT+TGG | 0.499682 | 3:-78513977 | MsG0380016060.01.T01:CDS |
| CCCTGCCGGTATTGGAATGA+AGG | 0.502152 | 3:-78513718 | MsG0380016060.01.T01:intron |
| GCCACCGTGAACCAGTATCC+TGG | 0.509623 | 3:+78514074 | None:intergenic |
| CATGGTATATCCTCTGCAGC+AGG | 0.519226 | 3:-78513822 | MsG0380016060.01.T01:CDS |
| GGTGTCCTTCATTCCAATAC+CGG | 0.535296 | 3:+78513713 | None:intergenic |
| ATGTAGATCTCAACCTAGCT+GGG | 0.538486 | 3:+78513847 | None:intergenic |
| ATATTTATAGTAGTATTGGT+TGG | 0.553131 | 3:-78514184 | MsG0380016060.01.T03:CDS |
| CTCGGCAGGCACAACAAAAG+TGG | 0.561882 | 3:+78513875 | None:intergenic |
| CTAGCTGGGAAAATCTCGGC+AGG | 0.563700 | 3:+78513861 | None:intergenic |
| ATTGCATTCATATCTTGTGC+TGG | 0.564346 | 3:+78514155 | None:intergenic |
| CAACCTAGCTGGGAAAATCT+CGG | 0.566634 | 3:+78513857 | None:intergenic |
| TCCAGCTTTCCCTGCTGCAG+AGG | 0.568474 | 3:+78513812 | None:intergenic |
| AGAGATGCAGGGTACCCTGC+CGG | 0.580339 | 3:-78513732 | MsG0380016060.01.T01:intron |
| TGTTCCAGGATACTGGTTCA+CGG | 0.588994 | 3:-78514078 | MsG0380016060.01.T03:CDS |
| AGGTTGAGATCTACATGTCA+TGG | 0.602679 | 3:-78513840 | MsG0380016060.01.T01:CDS |
| AAATCATTGGAAGAAATGAG+TGG | 0.620125 | 3:-78513621 | MsG0380016060.01.T01:CDS |
| AGGAACAGTCCTATTAGAAG+AGG | 0.629387 | 3:+78513551 | None:intergenic |
| GCATTCATATCTTGTGCTGG+TGG | 0.631698 | 3:+78514158 | None:intergenic |
| ATGGTATATCCTCTGCAGCA+GGG | 0.647894 | 3:-78513821 | MsG0380016060.01.T01:CDS |
| CCTTCATTCCAATACCGGCA+GGG | 0.671045 | 3:+78513718 | None:intergenic |
| AATGTCAAGAAGAAACCAAG+TGG | 0.680447 | 3:+78514238 | None:intergenic |
| GTAATAGTAATACATCACAC+AGG | 0.741588 | 3:+78513531 | None:intergenic |
| TCCAGGATACTGGTTCACGG+TGG | 0.743819 | 3:-78514075 | MsG0380016060.01.T03:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTTATAGTAGTAT+TGG | - | Chr3:78513626-78513645 | MsG0380016060.01.T01:CDS | 15.0% |
| !!! | ACTTTTTTCTTTGCAAATTT+TGG | - | Chr3:78513905-78513924 | MsG0380016060.01.T01:CDS | 20.0% |
| !!! | ATATTTATAGTAGTATTGGT+TGG | - | Chr3:78513630-78513649 | MsG0380016060.01.T01:CDS | 20.0% |
| AAATCATTGGAAGAAATGAG+TGG | - | Chr3:78514193-78514212 | MsG0380016060.01.T03:CDS | 30.0% | |
| ACAACAAAAGTGGTTGAATT+TGG | + | Chr3:78513932-78513951 | None:intergenic | 30.0% | |
| ACTAAGAGAGAAAACAGAAT+TGG | - | Chr3:78513860-78513879 | MsG0380016060.01.T01:CDS | 30.0% | |
| AGAAGCTAATGGAAAATCAT+TGG | - | Chr3:78514180-78514199 | MsG0380016060.01.T03:CDS | 30.0% | |
| ! | CGTTTTGCAATTCAACTAAT+GGG | - | Chr3:78513782-78513801 | MsG0380016060.01.T01:CDS | 30.0% |
| ! | GTGGCTTTTATTGATGTTAT+TGG | - | Chr3:78513758-78513777 | MsG0380016060.01.T01:intron | 30.0% |
| ! | TCGTTTTGCAATTCAACTAA+TGG | - | Chr3:78513781-78513800 | MsG0380016060.01.T01:CDS | 30.0% |
| !! | AATGATTTTCCATTAGCTTC+TGG | + | Chr3:78514181-78514200 | None:intergenic | 30.0% |
| AACCACAGCAAGCAAAATAA+GGG | + | Chr3:78514125-78514144 | None:intergenic | 35.0% | |
| AATGTCAAGAAGAAACCAAG+TGG | + | Chr3:78513579-78513598 | None:intergenic | 35.0% | |
| ATCAACAAGCCTCTTCTAAT+AGG | - | Chr3:78514254-78514273 | MsG0380016060.01.T03:CDS | 35.0% | |
| ATCCAAAAAAGAGAGATGCA+GGG | - | Chr3:78514071-78514090 | MsG0380016060.01.T03:CDS | 35.0% | |
| ATTGCATTCATATCTTGTGC+TGG | + | Chr3:78513662-78513681 | None:intergenic | 35.0% | |
| CTCTTAGTCCAATGATCATA+CGG | + | Chr3:78513848-78513867 | None:intergenic | 35.0% | |
| CTTGTATGCTTCACAAAGTA+AGG | - | Chr3:78514048-78514067 | MsG0380016060.01.T03:CDS | 35.0% | |
| TAACCACAGCAAGCAAAATA+AGG | + | Chr3:78514126-78514145 | None:intergenic | 35.0% | |
| ACAACGCTTATAGCACTTTG+TGG | - | Chr3:78513710-78513729 | MsG0380016060.01.T01:intron | 40.0% | |
| AGGAACAGTCCTATTAGAAG+AGG | + | Chr3:78514266-78514285 | None:intergenic | 40.0% | |
| AGGTTGAGATCTACATGTCA+TGG | - | Chr3:78513974-78513993 | MsG0380016060.01.T01:CDS | 40.0% | |
| ATGTAGATCTCAACCTAGCT+GGG | + | Chr3:78513970-78513989 | None:intergenic | 40.0% | |
| GATCCAAAAAAGAGAGATGC+AGG | - | Chr3:78514070-78514089 | MsG0380016060.01.T03:CDS | 40.0% | |
| GGAGCAATTATAGGTGCATT+TGG | - | Chr3:78514022-78514041 | MsG0380016060.01.T03:CDS | 40.0% | |
| TCGCTATTCCGTATGATCAT+TGG | - | Chr3:78513837-78513856 | MsG0380016060.01.T01:CDS | 40.0% | |
| TTTCTTGTGCCAGAAGCTAA+TGG | - | Chr3:78514169-78514188 | MsG0380016060.01.T03:CDS | 40.0% | |
| ! | CTTGCTGTGGTTAATTGTCT+TGG | - | Chr3:78514133-78514152 | MsG0380016060.01.T03:CDS | 40.0% |
| ! | GTGCAAGACAAGAACAGTTT+TGG | - | Chr3:78513545-78513564 | MsG0380016060.01.T01:CDS | 40.0% |
| !!! | GTTTTGGAACAACTTCCACT+TGG | - | Chr3:78513561-78513580 | MsG0380016060.01.T01:CDS | 40.0% |
| !!! | TACCCTGCATCTCTCTTTTT+TGG | + | Chr3:78514076-78514095 | None:intergenic | 40.0% |
| ATGGTATATCCTCTGCAGCA+GGG | - | Chr3:78513993-78514012 | MsG0380016060.01.T01:CDS | 45.0% | |
| CAACCTAGCTGGGAAAATCT+CGG | + | Chr3:78513960-78513979 | None:intergenic | 45.0% | |
| CATGTAGATCTCAACCTAGC+TGG | + | Chr3:78513971-78513990 | None:intergenic | 45.0% | |
| GCATTCATATCTTGTGCTGG+TGG | + | Chr3:78513659-78513678 | None:intergenic | 45.0% | |
| GGGAAAGCTGGAGCAATTAT+AGG | - | Chr3:78514013-78514032 | MsG0380016060.01.T03:CDS | 45.0% | |
| GGTGTCCTTCATTCCAATAC+CGG | + | Chr3:78514104-78514123 | None:intergenic | 45.0% | |
| !! | TGTTCCAGGATACTGGTTCA+CGG | - | Chr3:78513736-78513755 | MsG0380016060.01.T01:intron | 45.0% |
| !!! | CACCCTTATTTTGCTTGCTG+TGG | - | Chr3:78514120-78514139 | MsG0380016060.01.T03:CDS | 45.0% |
| CATGGTATATCCTCTGCAGC+AGG | - | Chr3:78513992-78514011 | MsG0380016060.01.T01:CDS | 50.0% | |
| CCTTCATTCCAATACCGGCA+GGG | + | Chr3:78514099-78514118 | None:intergenic | 50.0% | |
| GCACTTTGTGGAACTGTTCC+AGG | - | Chr3:78513722-78513741 | MsG0380016060.01.T01:intron | 50.0% | |
| GTGGAACTGTTCCAGGATAC+TGG | - | Chr3:78513729-78513748 | MsG0380016060.01.T01:intron | 50.0% | |
| TCCTTCATTCCAATACCGGC+AGG | + | Chr3:78514100-78514119 | None:intergenic | 50.0% | |
| CTAGCTGGGAAAATCTCGGC+AGG | + | Chr3:78513956-78513975 | None:intergenic | 55.0% | |
| CTCGGCAGGCACAACAAAAG+TGG | + | Chr3:78513942-78513961 | None:intergenic | 55.0% | |
| ! | CCCTGCCGGTATTGGAATGA+AGG | - | Chr3:78514096-78514115 | MsG0380016060.01.T03:CDS | 55.0% |
| ! | CTGCCGAGATTTTCCCAGCT+AGG | - | Chr3:78513954-78513973 | MsG0380016060.01.T01:CDS | 55.0% |
| !! | TCCAGGATACTGGTTCACGG+TGG | - | Chr3:78513739-78513758 | MsG0380016060.01.T01:intron | 55.0% |
| GCCACCGTGAACCAGTATCC+TGG | + | Chr3:78513743-78513762 | None:intergenic | 60.0% | |
| TCCAGCTTTCCCTGCTGCAG+AGG | + | Chr3:78514005-78514024 | None:intergenic | 60.0% | |
| TCCTCTGCAGCAGGGAAAGC+TGG | - | Chr3:78514001-78514020 | MsG0380016060.01.T01:CDS | 60.0% | |
| ! | AGAGATGCAGGGTACCCTGC+CGG | - | Chr3:78514082-78514101 | MsG0380016060.01.T03:CDS | 60.0% |
| ! | GCAGGGTACCCTGCCGGTAT+TGG | - | Chr3:78514088-78514107 | MsG0380016060.01.T03:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 78513545 | 78514291 | 78513545 | ID=MsG0380016060.01;Name=MsG0380016060.01 |
| Chr3 | mRNA | 78513545 | 78514021 | 78513545 | ID=MsG0380016060.01.T01;Parent=MsG0380016060.01;Name=MsG0380016060.01.T01;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|0|0|2|0|143 |
| Chr3 | exon | 78513545 | 78513726 | 78513545 | ID=MsG0380016060.01.T01:exon:17459;Parent=MsG0380016060.01.T01 |
| Chr3 | exon | 78513772 | 78514021 | 78513772 | ID=MsG0380016060.01.T01:exon:17458;Parent=MsG0380016060.01.T01 |
| Chr3 | CDS | 78513772 | 78514021 | 78513772 | ID=MsG0380016060.01.T01:cds;Parent=MsG0380016060.01.T01 |
| Chr3 | CDS | 78513545 | 78513726 | 78513545 | ID=MsG0380016060.01.T01:cds;Parent=MsG0380016060.01.T01 |
| Chr3 | mRNA | 78513545 | 78513943 | 78513545 | ID=MsG0380016060.01.T02;Parent=MsG0380016060.01;Name=MsG0380016060.01.T02;_AED=0.39;_eAED=0.39;_QI=0|0|0|1|0|0|2|0|119 |
| Chr3 | exon | 78513545 | 78513732 | 78513545 | ID=MsG0380016060.01.T02:exon:17461;Parent=MsG0380016060.01.T02 |
| Chr3 | exon | 78513772 | 78513943 | 78513772 | ID=MsG0380016060.01.T02:exon:17460;Parent=MsG0380016060.01.T02 |
| Chr3 | CDS | 78513772 | 78513943 | 78513772 | ID=MsG0380016060.01.T02:cds;Parent=MsG0380016060.01.T02 |
| Chr3 | CDS | 78513545 | 78513732 | 78513545 | ID=MsG0380016060.01.T02:cds;Parent=MsG0380016060.01.T02 |
| Chr3 | mRNA | 78513545 | 78514291 | 78513545 | ID=MsG0380016060.01.T03;Parent=MsG0380016060.01;Name=MsG0380016060.01.T03;_AED=0.27;_eAED=0.27;_QI=0|-1|0|1|-1|1|1|0|248 |
| Chr3 | exon | 78513545 | 78514291 | 78513545 | ID=MsG0380016060.01.T03:exon:17462;Parent=MsG0380016060.01.T03 |
| Chr3 | CDS | 78513545 | 78514291 | 78513545 | ID=MsG0380016060.01.T03:cds;Parent=MsG0380016060.01.T03 |
| Chr3 | mRNA | 78513545 | 78514165 | 78513545 | ID=MsG0380016060.01.T04;Parent=MsG0380016060.01;Name=MsG0380016060.01.T04;_AED=0.31;_eAED=0.31;_QI=0|-1|0|1|-1|0|1|0|206 |
| Chr3 | exon | 78513545 | 78514165 | 78513545 | ID=MsG0380016060.01.T04:exon:17463;Parent=MsG0380016060.01.T04 |
| Chr3 | CDS | 78513545 | 78514165 | 78513545 | ID=MsG0380016060.01.T04:cds;Parent=MsG0380016060.01.T04 |
| Chr3 | mRNA | 78513545 | 78513724 | 78513545 | ID=MsG0380016060.01.T05;Parent=MsG0380016060.01;Name=MsG0380016060.01.T05;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|0|1|0|59 |
| Chr3 | exon | 78513545 | 78513724 | 78513545 | ID=MsG0380016060.01.T05:exon:17464;Parent=MsG0380016060.01.T05 |
| Chr3 | CDS | 78513545 | 78513724 | 78513545 | ID=MsG0380016060.01.T05:cds;Parent=MsG0380016060.01.T05 |
| Gene Sequence |
| Protein sequence |
