AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016061.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016061.01.T01 MTR_3g082700 85.767 541 3 3 1 467 1 541 0.0 917
MsG0380016061.01.T01 MTR_1g074930 67.970 537 96 4 5 467 4 538 0.0 729
MsG0380016061.01.T01 MTR_1g069935 65.835 521 102 3 1 448 1 518 0.0 686
MsG0380016061.01.T01 MTR_1g043220 67.816 522 94 3 5 452 4 525 0.0 686
MsG0380016061.01.T01 MTR_1g043200 67.754 521 94 3 5 451 4 524 0.0 684
MsG0380016061.01.T01 MTR_1g074940 71.368 468 96 3 1 431 1 467 0.0 681
MsG0380016061.01.T01 MTR_1g043290 67.433 522 96 3 5 452 4 525 0.0 680
MsG0380016061.01.T01 MTR_7g096870 65.121 539 111 4 1 465 1 536 0.0 677
MsG0380016061.01.T01 MTR_7g096880 71.795 468 93 2 1 434 1 463 0.0 672
MsG0380016061.01.T01 MTR_1g069930 60.075 536 138 4 1 463 1 533 0.0 632
MsG0380016061.01.T01 MTR_5g068140 52.876 539 170 6 7 464 6 541 0.0 535
MsG0380016061.01.T01 MTR_1g028600 53.935 521 174 4 6 463 3 520 0.0 531
MsG0380016061.01.T01 MTR_4g083960 52.553 470 174 9 1 432 1 459 1.03e-153 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016061.01.T01 AT3G54700 69.216 523 82 4 1 449 1 518 0.0 717
MsG0380016061.01.T01 AT3G54700 69.216 523 82 4 1 449 1 518 0.0 717
MsG0380016061.01.T01 AT2G32830 66.974 542 104 4 1 467 1 542 0.0 716
MsG0380016061.01.T01 AT2G38940 73.077 468 92 1 1 434 1 468 0.0 711
MsG0380016061.01.T01 AT5G43350 66.221 524 103 3 1 451 1 523 0.0 691
MsG0380016061.01.T01 AT5G43360 66.475 522 101 3 1 449 1 521 0.0 691
MsG0380016061.01.T01 AT5G43370 66.859 519 98 3 1 446 1 518 0.0 660
MsG0380016061.01.T01 AT5G43370 66.859 519 98 3 1 446 1 518 0.0 660
MsG0380016061.01.T01 AT5G43340 59.884 516 145 4 1 455 1 515 0.0 621
MsG0380016061.01.T01 AT1G20860 48.319 476 198 8 6 444 3 467 1.01e-145 427
MsG0380016061.01.T01 AT1G20860 48.319 476 198 8 6 444 55 519 2.96e-145 428
MsG0380016061.01.T01 AT1G76430 47.458 472 193 9 5 431 3 464 5.98e-145 425
MsG0380016061.01.T01 AT4G08878 56.923 260 76 2 31 256 13 270 1.86e-89 274
MsG0380016061.01.T01 AT4G08895 47.619 168 51 2 287 454 23 153 3.83e-48 163

Find 81 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTTTCTTTAGATTT+TGG 0.112713 3:-78544871 MsG0380016061.01.T01:CDS
TATGCAAGGGTTTGGAATTT+TGG 0.193186 3:-78544747 MsG0380016061.01.T01:CDS
ACAACAAAAGTGGTTGAATT+TGG 0.258019 3:+78543858 None:intergenic
AGCACTTTGTGGAACTGTTC+CGG 0.298632 3:-78544066 MsG0380016061.01.T01:CDS
TACCAGAAGCTGATTATGTT+TGG 0.328852 3:-78544634 MsG0380016061.01.T01:CDS
GTGGAACTGTTCCGGGATAC+TGG 0.329105 3:-78544058 MsG0380016061.01.T01:CDS
CCAAGTAACTTGGTAACATT+TGG 0.331913 3:+78545129 None:intergenic
TGGAGAATCATTCTCATGTT+TGG 0.337056 3:-78544614 MsG0380016061.01.T01:CDS
GGACATGTCAAGTGTGTTAC+AGG 0.350706 3:-78544354 MsG0380016061.01.T01:CDS
GCACTTTGTGGAACTGTTCC+GGG 0.351063 3:-78544065 MsG0380016061.01.T01:CDS
GGAGCAATTATAGGTGCATT+TGG 0.351461 3:-78543765 MsG0380016061.01.T01:CDS
GTGCAAGACAAGAACAGTTT+TGG 0.354549 3:-78544290 MsG0380016061.01.T01:CDS
CTCCAAACATAATCAGCTTC+TGG 0.355251 3:+78544632 None:intergenic
CCAAATGTTACCAAGTTACT+TGG 0.357071 3:-78545129 MsG0380016061.01.T01:CDS
TTTACTGCTGCTGATACATT+TGG 0.358950 3:+78545057 None:intergenic
GCTGCAGCGTCAACTTTATA+AGG 0.364153 3:+78544665 None:intergenic
ACTAAAAGAGAAAACAGAAT+TGG 0.370784 3:-78543927 MsG0380016061.01.T01:CDS
ACATTTGGAGGCAAAGTTCC+AGG 0.372446 3:+78545072 None:intergenic
GGGAAAGCTGGAGCAATTAT+AGG 0.377218 3:-78543774 MsG0380016061.01.T01:CDS
TTTCTTGTGCCAGAAGCTAA+TGG 0.378357 3:-78543619 MsG0380016061.01.T01:intron
CTGCTGGTTTAACTTACTAT+TGG 0.383547 3:-78544583 MsG0380016061.01.T01:CDS
CACTCAGCAAAGGGTACAAT+TGG 0.385896 3:-78544896 MsG0380016061.01.T01:intron
GAAATGGTACCATTGTGTTT+TGG 0.389577 3:+78545212 None:intergenic
TTCACAGCCATCATAATTGC+TGG 0.392806 3:-78545192 MsG0380016061.01.T01:CDS
AATGTATCAGCAGCAGTAAA+TGG 0.399626 3:-78545054 MsG0380016061.01.T01:CDS
TCCTCTGCAGCAGGGAAAGC+TGG 0.401210 3:-78543786 MsG0380016061.01.T01:CDS
AAAAGTTTACCTTGCTGTCT+CGG 0.405238 3:+78544547 None:intergenic
AGCCATCATAATTGCTGGTA+TGG 0.413402 3:-78545187 MsG0380016061.01.T01:CDS
GCTCTTTGTGGCACTCTAGC+AGG 0.420937 3:-78545027 MsG0380016061.01.T01:CDS
TAACATTTGGTATGCAGAAA+AGG 0.431970 3:+78545142 None:intergenic
AGAAGCTAATGGAAAATCAT+TGG 0.433339 3:-78543608 MsG0380016061.01.T01:CDS
ATCCACAAGCCTCTTCTAAT+AGG 0.441859 3:-78543534 MsG0380016061.01.T01:CDS
TCGTGGCGCGTTTATAGCTT+CGG 0.447395 3:-78544777 MsG0380016061.01.T01:CDS
ATGTTTGGCGCTGTTCCTGC+TGG 0.448854 3:-78544599 MsG0380016061.01.T01:CDS
AAAGTTTACCTTGCTGTCTC+GGG 0.450939 3:+78544548 None:intergenic
GTAAATGGTGTTGCTCTTTG+TGG 0.464585 3:-78545039 MsG0380016061.01.T01:CDS
GTTCCAGGCTTGAGTGCACC+TGG 0.466167 3:+78545087 None:intergenic
ACAACGCTTATAGCACTTTG+TGG 0.467494 3:-78544077 MsG0380016061.01.T01:CDS
ACTGCTGCTGATACATTTGG+AGG 0.480011 3:+78545060 None:intergenic
CACCCAGGTGCACTCAAGCC+TGG 0.480902 3:-78545090 MsG0380016061.01.T01:CDS
CGAGCCAACCAAAGAAAAGT+TGG 0.494246 3:+78545004 None:intergenic
TCGCTATTCCGTATGATCAT+TGG 0.501987 3:-78543950 MsG0380016061.01.T01:CDS
AAAGATATTTATAGTAGTAT+CGG 0.503148 3:-78544161 MsG0380016061.01.T01:CDS
CATGGTATATCCTCTGCAGC+AGG 0.519226 3:-78543795 MsG0380016061.01.T01:CDS
CAATTATGATGGCTGTGAAA+TGG 0.521173 3:+78545196 None:intergenic
GACATAATAGTAGCTGAAAG+AGG 0.523195 3:+78544821 None:intergenic
GTATATTCTTCCAAGTAACT+TGG 0.525330 3:+78545119 None:intergenic
CATGTAGACCTCAACCTAGC+CGG 0.533609 3:+78543819 None:intergenic
GAATGCAAAACAAGCAGCGC+AGG 0.534610 3:-78544375 MsG0380016061.01.T01:CDS
GCCATCATAATTGCTGGTAT+GGG 0.536058 3:-78545186 MsG0380016061.01.T01:CDS
ATGTAGACCTCAACCTAGCC+GGG 0.545552 3:+78543820 None:intergenic
TGCTTGGAACAACTTCCACT+TGG 0.545836 3:-78544226 MsG0380016061.01.T01:CDS
TAGTATCGGTTGGCTTCCAC+CGG 0.550442 3:-78544147 MsG0380016061.01.T01:CDS
TCCCATACCAGCAATTATGA+TGG 0.555478 3:+78545185 None:intergenic
AGACACGGTCTTCATCTGCT+TGG 0.560681 3:-78544242 MsG0380016061.01.T01:CDS
CTCGGCAGGCACAACAAAAG+TGG 0.561882 3:+78543848 None:intergenic
TCCAGCTTTCCCTGCTGCAG+AGG 0.568474 3:+78543785 None:intergenic
GCCACCGTGAACCAGTATCC+CGG 0.570413 3:+78544047 None:intergenic
CAATAGTAAGTTAAACCAGC+AGG 0.570890 3:+78544584 None:intergenic
ATATTTATAGTAGTATCGGT+TGG 0.576691 3:-78544157 MsG0380016061.01.T01:CDS
TGTTCCGGGATACTGGTTCA+CGG 0.578109 3:-78544051 MsG0380016061.01.T01:CDS
CTAGCCGGGAAAATCTCGGC+AGG 0.590971 3:+78543834 None:intergenic
CAACCTAGCCGGGAAAATCT+CGG 0.596897 3:+78543830 None:intergenic
GTCCTATTAGAAGAGGCTTG+TGG 0.607364 3:+78543532 None:intergenic
AGGTTGAGGTCTACATGTCA+TGG 0.608393 3:-78543813 MsG0380016061.01.T01:CDS
ACATAATAGTAGCTGAAAGA+GGG 0.611460 3:+78544822 None:intergenic
TGAAAATGCCCGAGACAGCA+AGG 0.612569 3:-78544556 MsG0380016061.01.T01:intron
ATTGCATTCATATCTTGTGC+CGG 0.613095 3:+78544128 None:intergenic
AAATCATTGGAAGAAATGAG+TGG 0.620125 3:-78543595 MsG0380016061.01.T01:CDS
AGGAACAGTCCTATTAGAAG+AGG 0.629387 3:+78543525 None:intergenic
GCATTCATATCTTGTGCCGG+TGG 0.633100 3:+78544131 None:intergenic
ATGGTATATCCTCTGCAGCA+GGG 0.647894 3:-78543794 MsG0380016061.01.T01:CDS
TTCCAGGCTTGAGTGCACCT+GGG 0.648892 3:+78545088 None:intergenic
AAGGAGTTTCTTAGAAGACA+CGG 0.654294 3:-78544257 MsG0380016061.01.T01:CDS
GCAGCGTCAACTTTATAAGG+CGG 0.662919 3:+78544668 None:intergenic
ATCATGGCTCGTGAACAACT+AGG 0.672656 3:-78545258 MsG0380016061.01.T01:CDS
AGAATATACTACACACACCC+AGG 0.681223 3:-78545105 MsG0380016061.01.T01:CDS
TTGATGCAGCCAAAACACAA+TGG 0.702246 3:-78545221 MsG0380016061.01.T01:CDS
AATATCGAGAAGAAACCAAG+TGG 0.702390 3:+78544211 None:intergenic
GTAATAGTAATACATCACAC+AGG 0.741588 3:+78543505 None:intergenic
TCCGGGATACTGGTTCACGG+TGG 0.750080 3:-78544048 MsG0380016061.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATATTTATAGTAGTAT+CGG - Chr3:78544613-78544632 MsG0380016061.01.T01:CDS 15.0%
!!! ACTTTTTTCTTTGCAAATTT+TGG - Chr3:78544892-78544911 MsG0380016061.01.T01:CDS 20.0%
! AATGGGAAGAAAAAAGTTTA+TGG - Chr3:78543800-78543819 MsG0380016061.01.T01:CDS 25.0%
! ACTAAAAGAGAAAACAGAAT+TGG - Chr3:78544847-78544866 MsG0380016061.01.T01:CDS 25.0%
! ACTACTAAATCACTAACATT+TGG + Chr3:78544266-78544285 None:intergenic 25.0%
!!! ATATTTATAGTAGTATCGGT+TGG - Chr3:78544617-78544636 MsG0380016061.01.T01:CDS 25.0%
!!! CTCTTTGTTTCTTTAGATTT+TGG - Chr3:78543903-78543922 MsG0380016061.01.T01:CDS 25.0%
AAATCATTGGAAGAAATGAG+TGG - Chr3:78545179-78545198 MsG0380016061.01.T01:CDS 30.0%
ACAACAAAAGTGGTTGAATT+TGG + Chr3:78544919-78544938 None:intergenic 30.0%
ACATAATAGTAGCTGAAAGA+GGG + Chr3:78543955-78543974 None:intergenic 30.0%
ACCTATATAGATAAGTAGCT+CGG + Chr3:78544360-78544379 None:intergenic 30.0%
AGAAGCTAATGGAAAATCAT+TGG - Chr3:78545166-78545185 MsG0380016061.01.T01:CDS 30.0%
CAAGAAAAAGTAGACAAGAT+AGG - Chr3:78544460-78544479 MsG0380016061.01.T01:intron 30.0%
GTATATTCTTCCAAGTAACT+TGG + Chr3:78543658-78543677 None:intergenic 30.0%
TAACATTTGGTATGCAGAAA+AGG + Chr3:78543635-78543654 None:intergenic 30.0%
! CGTTTTGCAATTCAACTAAT+GGG - Chr3:78544769-78544788 MsG0380016061.01.T01:CDS 30.0%
! CTTTTAGTCCAATGATCATA+CGG + Chr3:78544835-78544854 None:intergenic 30.0%
! TCGTTTTGCAATTCAACTAA+TGG - Chr3:78544768-78544787 MsG0380016061.01.T01:CDS 30.0%
! TGCTTTTGATCATGCTTTTA+AGG - Chr3:78544081-78544100 MsG0380016061.01.T01:CDS 30.0%
!! AATGATTTTCCATTAGCTTC+TGG + Chr3:78545167-78545186 None:intergenic 30.0%
!!! CAGTTTTGGTTTGTTTAGTA+AGG - Chr3:78544498-78544517 MsG0380016061.01.T01:intron 30.0%
!!! TGTTTCTTTAGATTTTGGCT+AGG - Chr3:78543908-78543927 MsG0380016061.01.T01:CDS 30.0%
!!! TTTAGATTTTGGCTAGGTTT+TGG - Chr3:78543914-78543933 MsG0380016061.01.T01:CDS 30.0%
AAGGAGTTTCTTAGAAGACA+CGG - Chr3:78544517-78544536 MsG0380016061.01.T01:intron 35.0%
AATATCGAGAAGAAACCAAG+TGG + Chr3:78544566-78544585 None:intergenic 35.0%
AATGTATCAGCAGCAGTAAA+TGG - Chr3:78543720-78543739 MsG0380016061.01.T01:intron 35.0%
ACCGAGCTACTTATCTATAT+AGG - Chr3:78544356-78544375 MsG0380016061.01.T01:CDS 35.0%
ATTGCATTCATATCTTGTGC+CGG + Chr3:78544649-78544668 None:intergenic 35.0%
CAATAGTAAGTTAAACCAGC+AGG + Chr3:78544193-78544212 None:intergenic 35.0%
CAATTATGATGGCTGTGAAA+TGG + Chr3:78543581-78543600 None:intergenic 35.0%
CCAAATGTTACCAAGTTACT+TGG - Chr3:78543645-78543664 MsG0380016061.01.T01:intron 35.0%
CTTGTATGCTTCACAAAGTA+AGG - Chr3:78545035-78545054 MsG0380016061.01.T01:CDS 35.0%
GACATAATAGTAGCTGAAAG+AGG + Chr3:78543956-78543975 None:intergenic 35.0%
TACCAGAAGCTGATTATGTT+TGG - Chr3:78544140-78544159 MsG0380016061.01.T01:CDS 35.0%
TATGCTAACAAAAAGACTCG+TGG - Chr3:78543980-78543999 MsG0380016061.01.T01:CDS 35.0%
TGGAGAATCATTCTCATGTT+TGG - Chr3:78544160-78544179 MsG0380016061.01.T01:CDS 35.0%
TTTACTGCTGCTGATACATT+TGG + Chr3:78543720-78543739 None:intergenic 35.0%
! AAAAGTTTACCTTGCTGTCT+CGG + Chr3:78544230-78544249 None:intergenic 35.0%
! CCAAGTAACTTGGTAACATT+TGG + Chr3:78543648-78543667 None:intergenic 35.0%
! GAAATGGTACCATTGTGTTT+TGG + Chr3:78543565-78543584 None:intergenic 35.0%
! GTGGCTTTTATCGATGTTAT+TGG - Chr3:78544745-78544764 MsG0380016061.01.T01:CDS 35.0%
!! CTGCTGGTTTAACTTACTAT+TGG - Chr3:78544191-78544210 MsG0380016061.01.T01:CDS 35.0%
!! TATGCAAGGGTTTGGAATTT+TGG - Chr3:78544027-78544046 MsG0380016061.01.T01:CDS 35.0%
!! TTTTGGCTAGGTTTTGGTAT+TGG - Chr3:78543920-78543939 MsG0380016061.01.T01:CDS 35.0%
ACAACGCTTATAGCACTTTG+TGG - Chr3:78544697-78544716 MsG0380016061.01.T01:CDS 40.0%
AGAATATACTACACACACCC+AGG - Chr3:78543669-78543688 MsG0380016061.01.T01:intron 40.0%
AGCCATCATAATTGCTGGTA+TGG - Chr3:78543587-78543606 MsG0380016061.01.T01:CDS 40.0%
AGGAACAGTCCTATTAGAAG+AGG + Chr3:78545252-78545271 None:intergenic 40.0%
ATCCACAAGCCTCTTCTAAT+AGG - Chr3:78545240-78545259 MsG0380016061.01.T01:CDS 40.0%
CTCCAAACATAATCAGCTTC+TGG + Chr3:78544145-78544164 None:intergenic 40.0%
GATCCAAAAAGAGAGATGCA+GGG - Chr3:78545057-78545076 MsG0380016061.01.T01:CDS 40.0%
GCCATCATAATTGCTGGTAT+GGG - Chr3:78543588-78543607 MsG0380016061.01.T01:CDS 40.0%
GGAGCAATTATAGGTGCATT+TGG - Chr3:78545009-78545028 MsG0380016061.01.T01:intron 40.0%
GTATTCTCTTCTCTTGCTTC+TGG - Chr3:78543842-78543861 MsG0380016061.01.T01:CDS 40.0%
TCCCATACCAGCAATTATGA+TGG + Chr3:78543592-78543611 None:intergenic 40.0%
TCGCTATTCCGTATGATCAT+TGG - Chr3:78544824-78544843 MsG0380016061.01.T01:CDS 40.0%
TCTTCATTCCAATACCAGCA+GGG + Chr3:78545085-78545104 None:intergenic 40.0%
TGGTCTAACTCTTGCTCTTA+TGG - Chr3:78543820-78543839 MsG0380016061.01.T01:CDS 40.0%
TTCACAGCCATCATAATTGC+TGG - Chr3:78543582-78543601 MsG0380016061.01.T01:CDS 40.0%
TTCTTCATTCCAATACCAGC+AGG + Chr3:78545086-78545105 None:intergenic 40.0%
TTGATGCAGCCAAAACACAA+TGG - Chr3:78543553-78543572 MsG0380016061.01.T01:CDS 40.0%
TTGCTGAGTGACCAAAAGAA+AGG + Chr3:78543868-78543887 None:intergenic 40.0%
TTTCTTGTGCCAGAAGCTAA+TGG - Chr3:78545155-78545174 MsG0380016061.01.T01:CDS 40.0%
! AAAGTTTACCTTGCTGTCTC+GGG + Chr3:78544229-78544248 None:intergenic 40.0%
! CTTGCTGTGGTTAATTGTCT+TGG - Chr3:78545119-78545138 MsG0380016061.01.T01:CDS 40.0%
! GTGCAAGACAAGAACAGTTT+TGG - Chr3:78544484-78544503 MsG0380016061.01.T01:intron 40.0%
! TCTTTTGGTCACTCAGCAAA+GGG - Chr3:78543869-78543888 MsG0380016061.01.T01:CDS 40.0%
! TTCTTTTGGTCACTCAGCAA+AGG - Chr3:78543868-78543887 MsG0380016061.01.T01:CDS 40.0%
!! AACTTTTCTTTGGTTGGCTC+GGG - Chr3:78543772-78543791 MsG0380016061.01.T01:CDS 40.0%
!! CAACTTTTCTTTGGTTGGCT+CGG - Chr3:78543771-78543790 MsG0380016061.01.T01:CDS 40.0%
!! CTTCGGTTTTTGCTATGCAA+GGG - Chr3:78544014-78544033 MsG0380016061.01.T01:CDS 40.0%
!! GTAAATGGTGTTGCTCTTTG+TGG - Chr3:78543735-78543754 MsG0380016061.01.T01:intron 40.0%
!! GTTTTTGCTATGCAAGGGTT+TGG - Chr3:78544019-78544038 MsG0380016061.01.T01:CDS 40.0%
!!! ATTGTGTTTTGGCTGCATCA+AGG + Chr3:78543554-78543573 None:intergenic 40.0%
!!! CACTCTTATTTTGCTTGCTG+TGG - Chr3:78545106-78545125 MsG0380016061.01.T01:CDS 40.0%
!!! TTGTGTTTTGGCTGCATCAA+GGG + Chr3:78543553-78543572 None:intergenic 40.0%
AAAATCCAGCGTTCGAACTC+TGG + Chr3:78544300-78544319 None:intergenic 45.0%
ACATTTGGAGGCAAAGTTCC+AGG + Chr3:78543705-78543724 None:intergenic 45.0%
ACTGCTGCTGATACATTTGG+AGG + Chr3:78543717-78543736 None:intergenic 45.0%
AGCACTTTGTGGAACTGTTC+CGG - Chr3:78544708-78544727 MsG0380016061.01.T01:CDS 45.0%
AGGTTGAGGTCTACATGTCA+TGG - Chr3:78544961-78544980 MsG0380016061.01.T01:intron 45.0%
ATGGTATATCCTCTGCAGCA+GGG - Chr3:78544980-78544999 MsG0380016061.01.T01:intron 45.0%
CGAGCCAACCAAAGAAAAGT+TGG + Chr3:78543773-78543792 None:intergenic 45.0%
GCAGCGTCAACTTTATAAGG+CGG + Chr3:78544109-78544128 None:intergenic 45.0%
GCTGCAGCGTCAACTTTATA+AGG + Chr3:78544112-78544131 None:intergenic 45.0%
GGACATGTCAAGTGTGTTAC+AGG - Chr3:78544420-78544439 MsG0380016061.01.T01:intron 45.0%
GGATCCAAAAAGAGAGATGC+AGG - Chr3:78545056-78545075 MsG0380016061.01.T01:CDS 45.0%
GGGAAAGCTGGAGCAATTAT+AGG - Chr3:78545000-78545019 MsG0380016061.01.T01:intron 45.0%
GTCCTATTAGAAGAGGCTTG+TGG + Chr3:78545245-78545264 None:intergenic 45.0%
TAGCTCGGTTAGTGAGTGAA+AGG + Chr3:78544345-78544364 None:intergenic 45.0%
TGCTTGGAACAACTTCCACT+TGG - Chr3:78544548-78544567 MsG0380016061.01.T01:intron 45.0%
! CACTCAGCAAAGGGTACAAT+TGG - Chr3:78543878-78543897 MsG0380016061.01.T01:CDS 45.0%
! CAGGCCAACTTTTCTTTGGT+TGG - Chr3:78543766-78543785 MsG0380016061.01.T01:CDS 45.0%
! CTAGCAGGCCAACTTTTCTT+TGG - Chr3:78543762-78543781 MsG0380016061.01.T01:CDS 45.0%
! GTACCCTGCATCTCTCTTTT+TGG + Chr3:78545063-78545082 None:intergenic 45.0%
!! CAAGGGTTTGGAATTTTGGC+TGG - Chr3:78544031-78544050 MsG0380016061.01.T01:CDS 45.0%
!! CTTGCTTCTGGCCTTTCTTT+TGG - Chr3:78543854-78543873 MsG0380016061.01.T01:CDS 45.0%
!! GCTTCGGTTTTTGCTATGCA+AGG - Chr3:78544013-78544032 MsG0380016061.01.T01:CDS 45.0%
!! TGGCTAGGTTTTGGTATTGG+TGG - Chr3:78543923-78543942 MsG0380016061.01.T01:CDS 45.0%
!!! ACTTTTCTTTGGTTGGCTCG+GGG - Chr3:78543773-78543792 MsG0380016061.01.T01:CDS 45.0%
AGACACGGTCTTCATCTGCT+TGG - Chr3:78544532-78544551 MsG0380016061.01.T01:intron 50.0%
AGTTTCCAGAGTTCGAACGC+TGG - Chr3:78544292-78544311 MsG0380016061.01.T01:CDS 50.0%
ATGTAGACCTCAACCTAGCC+GGG + Chr3:78544957-78544976 None:intergenic 50.0%
CAACCTAGCCGGGAAAATCT+CGG + Chr3:78544947-78544966 None:intergenic 50.0%
CATGGTATATCCTCTGCAGC+AGG - Chr3:78544979-78544998 MsG0380016061.01.T01:intron 50.0%
CATGTAGACCTCAACCTAGC+CGG + Chr3:78544958-78544977 None:intergenic 50.0%
GAATGCAAAACAAGCAGCGC+AGG - Chr3:78544399-78544418 MsG0380016061.01.T01:CDS 50.0%
GCACTTTGTGGAACTGTTCC+GGG - Chr3:78544709-78544728 MsG0380016061.01.T01:CDS 50.0%
GCATTCATATCTTGTGCCGG+TGG + Chr3:78544646-78544665 None:intergenic 50.0%
TCGTGGCGCGTTTATAGCTT+CGG - Chr3:78543997-78544016 MsG0380016061.01.T01:CDS 50.0%
TGAAAATGCCCGAGACAGCA+AGG - Chr3:78544218-78544237 MsG0380016061.01.T01:CDS 50.0%
! AGATTTTCCCGGCTAGGTTG+AGG - Chr3:78544947-78544966 MsG0380016061.01.T01:intron 50.0%
!! TAGTATCGGTTGGCTTCCAC+CGG - Chr3:78544627-78544646 MsG0380016061.01.T01:CDS 50.0%
!! TGTTCCGGGATACTGGTTCA+CGG - Chr3:78544723-78544742 MsG0380016061.01.T01:CDS 50.0%
!!! GGGTTTGGAATTTTGGCTGG+TGG - Chr3:78544034-78544053 MsG0380016061.01.T01:CDS 50.0%
ATGTTTGGCGCTGTTCCTGC+TGG - Chr3:78544175-78544194 MsG0380016061.01.T01:CDS 55.0%
CTCGGCAGGCACAACAAAAG+TGG + Chr3:78544929-78544948 None:intergenic 55.0%
GCTCTTTGTGGCACTCTAGC+AGG - Chr3:78543747-78543766 MsG0380016061.01.T01:CDS 55.0%
GTGGAACTGTTCCGGGATAC+TGG - Chr3:78544716-78544735 MsG0380016061.01.T01:CDS 55.0%
TTCCAGGCTTGAGTGCACCT+GGG + Chr3:78543689-78543708 None:intergenic 55.0%
! TGTGCCTGCCGAGATTTTCC+CGG - Chr3:78544936-78544955 MsG0380016061.01.T01:intron 55.0%
!! GGTTGGCTCGGGGACAAAAT+GGG - Chr3:78543783-78543802 MsG0380016061.01.T01:CDS 55.0%
!! TGGTTGGCTCGGGGACAAAA+TGG - Chr3:78543782-78543801 MsG0380016061.01.T01:CDS 55.0%
CTAGCCGGGAAAATCTCGGC+AGG + Chr3:78544943-78544962 None:intergenic 60.0%
GCCACCGTGAACCAGTATCC+CGG + Chr3:78544730-78544749 None:intergenic 60.0%
GTTCCAGGCTTGAGTGCACC+TGG + Chr3:78543690-78543709 None:intergenic 60.0%
TCCAGCTTTCCCTGCTGCAG+AGG + Chr3:78544992-78545011 None:intergenic 60.0%
TCCTCTGCAGCAGGGAAAGC+TGG - Chr3:78544988-78545007 MsG0380016061.01.T01:intron 60.0%
! AGAGATGCAGGGTACCCTGC+TGG - Chr3:78545068-78545087 MsG0380016061.01.T01:CDS 60.0%
! CTGCCGAGATTTTCCCGGCT+AGG - Chr3:78544941-78544960 MsG0380016061.01.T01:intron 60.0%
! GCAGGGTACCCTGCTGGTAT+TGG - Chr3:78545074-78545093 MsG0380016061.01.T01:CDS 60.0%
!! TCCGGGATACTGGTTCACGG+TGG - Chr3:78544726-78544745 MsG0380016061.01.T01:CDS 60.0%
CACCCAGGTGCACTCAAGCC+TGG - Chr3:78543684-78543703 MsG0380016061.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78543519 78545277 78543519 ID=MsG0380016061.01;Name=MsG0380016061.01
Chr3 mRNA 78543519 78545277 78543519 ID=MsG0380016061.01.T01;Parent=MsG0380016061.01;Name=MsG0380016061.01.T01;_AED=0.24;_eAED=0.24;_QI=0|0.33|0|1|1|1|4|0|467
Chr3 exon 78545013 78545277 78545013 ID=MsG0380016061.01.T01:exon:17485;Parent=MsG0380016061.01.T01
Chr3 exon 78544557 78544911 78544557 ID=MsG0380016061.01.T01:exon:17484;Parent=MsG0380016061.01.T01
Chr3 exon 78543745 78544418 78543745 ID=MsG0380016061.01.T01:exon:17483;Parent=MsG0380016061.01.T01
Chr3 exon 78543519 78543628 78543519 ID=MsG0380016061.01.T01:exon:17482;Parent=MsG0380016061.01.T01
Chr3 CDS 78545013 78545277 78545013 ID=MsG0380016061.01.T01:cds;Parent=MsG0380016061.01.T01
Chr3 CDS 78544557 78544911 78544557 ID=MsG0380016061.01.T01:cds;Parent=MsG0380016061.01.T01
Chr3 CDS 78543745 78544418 78543745 ID=MsG0380016061.01.T01:cds;Parent=MsG0380016061.01.T01
Chr3 CDS 78543519 78543628 78543519 ID=MsG0380016061.01.T01:cds;Parent=MsG0380016061.01.T01
Gene Sequence

>MsG0380016061.01.T01

ATGGCTCGTGAACAACTAGGAGTTCTAACTGCCCTTGATGCAGCCAAAACACAATGGTACCATTTCACAGCCATCATAATTGCTGGTATGGGATTCTTCACAGATGCATATGACCTTTTCTGCATACCAAATGTTACCAAGTTACTTGGAAGAATATACTACACACACCCAGGTGCACTCAAGCCTGGAACTTTGCCTCCAAATGTATCAGCAGCAGTAAATGGTGTTGCTCTTTGTGGCACTCTAGCAGGCCAACTTTTCTTTGCAAAGGGTACAATTGGAACTCTTTGTTTCTTTAGATTTTGGCTAGGTTTTGGTATTGGTGGTGATTACCCTCTTTCAGCTACTATTATGTCTGAATATGCTAACAAAAAGACTCGTGGCGCGTTTATAGCTTCGGTTTTTGCTATGCAAGGGTTTGGAATTTTGGCTGGTGGAATTGTTTCTCTTATAGTTTCAACTGCTTTTGATCATGCTTTTAAGGCTCCGCCTTATAAAGTTGACGCTGCAGCATCACTTGTACCAGAAGCTGATTATGTTTGGAGAATCATTCTCATGTTTGGCGCTGTTCCTGCTGGTTTAACTTACTATTGGCGAATGAAAATGCCCGAGACAGCAAGGTACACTGCACTTGTTGCTAAGAATGCAAAACAAGCAGCGCAGGACATGTCAAGTGTGTTACAGGTTGAAATTGAAGCTGAACAAGAAAAAGTAGACAAGATAGGCGTGCAAGACAAGAACAGTTTTGGTTTGTTTAGTAAGGAGTTTCTTAGAAGACACGGTCTTCATCTGCTTGGAACAACTTCCACTTGGTTTCTTCTCGATATTGCTTATTATAGTTCAAATCTTTTTCAAAAAGATATTTATAGTAGTATCGGTTGGCTTCCACCGGCACAAGATATGAATGCAATTCATGAAGTTTTCAAAGTTGCTAGAGCGACAACGCTTATAGCACTTTGTGGAACTGTTCCGGGATACTGGTTCACGGTGGCTTTTATCGATGTTATTGGTCGTTTTGCAATTCAACTAATGGGATTCTTCTTTATGACTGTGTTCATGTTTGCGCTCGCTATTCCGTATGATCATTGGACTAAAAGAGAAAACAGAATTGGATTTCTTGTTATGTACGCAATGACTTTTTTCTTTGCAAATTTTGGTCCAAATTCAACCACTTTTGTTGTGCCTGCCGAGATTTTCCCGGCTAGGTTGAGGTCTACATGTCATGGTATATCCTCTGCAGCAGGGAAAGCTGGAGCAATTATAGGTGCATTTGGATTCTTGTATGCTTCACAAAAAGCTAATGGAAAATCATTGGAAGAAATGAGTGGAGAGAATGAAGAAGAAGAAACTGATGCTGCTGTTGTTGATCCACAAGCCTCTTCTAATAGGACTGTTCCTGTGTGA
Protein sequence

>MsG0380016061.01.T01

MAREQLGVLTALDAAKTQWYHFTAIIIAGMGFFTDAYDLFCIPNVTKLLGRIYYTHPGALKPGTLPPNVSAAVNGVALCGTLAGQLFFAKGTIGTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIASVFAMQGFGILAGGIVSLIVSTAFDHAFKAPPYKVDAAASLVPEADYVWRIILMFGAVPAGLTYYWRMKMPETARYTALVAKNAKQAAQDMSSVLQVEIEAEQEKVDKIGVQDKNSFGLFSKEFLRRHGLHLLGTTSTWFLLDIAYYSSNLFQKDIYSSIGWLPPAQDMNAIHEVFKVARATTLIALCGTVPGYWFTVAFIDVIGRFAIQLMGFFFMTVFMFALAIPYDHWTKRENRIGFLVMYAMTFFFANFGPNSTTFVVPAEIFPARLRSTCHGISSAAGKAGAIIGAFGFLYASQKANGKSLEEMSGENEEEETDAAVVDPQASSNRTVPV*