Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016128.01.T01 | XP_003601647.1 | 96.899 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.30E-84 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016128.01.T01 | P51082 | 93.798 | 129 | 8 | 0 | 1 | 129 | 1 | 129 | 1.38E-84 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016128.01.T01 | G7JA70 | 96.899 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 6.20e-85 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380016127.01 | MsG0380016128.01 | 0.950475 | 1.524247e-108 | 3.252432e-103 |
| MsG0380016128.01 | MsG0380016717.01 | 0.816408 | 5.616226e-52 | 3.976227e-49 |
| MsG0380016128.01 | MsG0580024176.01 | 0.809748 | 1.623419e-50 | 9.610819e-48 |
| MsG0380016128.01 | MsG0580024220.01 | 0.811063 | 8.441316e-51 | 5.173949e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016128.01.T01 | MTR_3g083910 | 96.899 | 129 | 4 | 0 | 1 | 129 | 1 | 129 | 1.57e-88 | 263 |
| MsG0380016128.01.T01 | MTR_3g083920 | 90.698 | 129 | 12 | 0 | 1 | 129 | 1 | 129 | 4.46e-84 | 251 |
| MsG0380016128.01.T01 | MTR_5g007760 | 91.200 | 125 | 11 | 0 | 1 | 125 | 1 | 125 | 1.07e-81 | 246 |
| MsG0380016128.01.T01 | MTR_7g016780 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 1.59e-81 | 245 |
| MsG0380016128.01.T01 | MTR_1g097935 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 1.66e-81 | 245 |
| MsG0380016128.01.T01 | MTR_7g016720 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 1.70e-81 | 245 |
| MsG0380016128.01.T01 | MTR_1g097910 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 1.70e-81 | 245 |
| MsG0380016128.01.T01 | MTR_7g016800 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 1.94e-81 | 245 |
| MsG0380016128.01.T01 | MTR_1g098140 | 90.400 | 125 | 12 | 0 | 1 | 125 | 1 | 125 | 2.07e-81 | 245 |
| MsG0380016128.01.T01 | MTR_5g007730 | 89.600 | 125 | 13 | 0 | 1 | 125 | 1 | 125 | 4.57e-81 | 244 |
| MsG0380016128.01.T01 | MTR_5g007717 | 87.597 | 129 | 16 | 0 | 1 | 129 | 1 | 129 | 4.93e-81 | 244 |
| MsG0380016128.01.T01 | MTR_7g016700 | 89.600 | 125 | 13 | 0 | 1 | 125 | 1 | 125 | 7.53e-81 | 243 |
| MsG0380016128.01.T01 | MTR_7g016820 | 89.600 | 125 | 13 | 0 | 1 | 125 | 1 | 125 | 9.25e-81 | 243 |
| MsG0380016128.01.T01 | MTR_5g007713 | 86.822 | 129 | 17 | 0 | 1 | 129 | 1 | 129 | 1.02e-80 | 243 |
| MsG0380016128.01.T01 | MTR_3g086260 | 85.271 | 129 | 19 | 0 | 1 | 129 | 1 | 129 | 1.87e-78 | 237 |
| MsG0380016128.01.T01 | MTR_2g058470 | 80.620 | 129 | 25 | 0 | 1 | 129 | 1 | 129 | 5.78e-75 | 228 |
| MsG0380016128.01.T01 | MTR_7g084300 | 77.519 | 129 | 29 | 0 | 1 | 129 | 1 | 129 | 2.32e-72 | 222 |
| MsG0380016128.01.T01 | MTR_3g088675 | 63.566 | 129 | 47 | 0 | 1 | 129 | 1 | 129 | 1.02e-56 | 182 |
| MsG0380016128.01.T01 | MTR_5g007723 | 55.738 | 122 | 33 | 3 | 12 | 114 | 32 | 151 | 7.85e-36 | 127 |
| MsG0380016128.01.T01 | MTR_5g007770 | 83.333 | 60 | 10 | 0 | 70 | 129 | 1 | 60 | 6.89e-29 | 107 |
| MsG0380016128.01.T01 | MTR_5g007740 | 71.212 | 66 | 19 | 0 | 64 | 129 | 1 | 66 | 6.18e-27 | 102 |
| MsG0380016128.01.T01 | MTR_3g088670 | 44.915 | 118 | 60 | 2 | 10 | 125 | 2 | 116 | 2.13e-24 | 97.1 |
| MsG0380016128.01.T01 | MTR_7g113405 | 97.436 | 39 | 1 | 0 | 87 | 125 | 1 | 39 | 1.01e-18 | 80.5 |
| MsG0380016128.01.T01 | MTR_4g075560 | 38.261 | 115 | 70 | 1 | 11 | 125 | 13 | 126 | 1.05e-16 | 75.9 |
| MsG0380016128.01.T01 | MTR_4g078730 | 31.532 | 111 | 75 | 1 | 15 | 125 | 24 | 133 | 2.70e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016128.01.T01 | AT5G13930 | 77.953 | 127 | 28 | 0 | 3 | 129 | 8 | 134 | 1.21e-70 | 218 |
| MsG0380016128.01.T01 | AT4G34850 | 36.937 | 111 | 69 | 1 | 15 | 125 | 18 | 127 | 1.40e-15 | 72.8 |
| MsG0380016128.01.T01 | AT1G02050 | 34.234 | 111 | 72 | 1 | 15 | 125 | 24 | 133 | 5.42e-14 | 68.2 |
| MsG0380016128.01.T01 | AT4G00040 | 32.432 | 111 | 74 | 1 | 15 | 125 | 17 | 126 | 1.85e-13 | 66.6 |
Find 59 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACACTTGGATTCTCTTTC+AGG | 0.214226 | 3:+79411643 | None:intergenic |
| CTTTCTGAGTCCTTGTTTAG+TGG | 0.300015 | 3:-79412133 | MsG0380016128.01.T01:five_prime_UTR |
| GGCCGTCAGCCCTCTGTGCC+TGG | 0.321278 | 3:+79411982 | None:intergenic |
| TTAGACTCAAAGAAAGAAAA+TGG | 0.327165 | 3:-79412024 | MsG0380016128.01.T01:exon |
| CGAGTACATGGCACCTTCAT+TGG | 0.339316 | 3:-79411619 | MsG0380016128.01.T01:CDS |
| CCTGCCACCGTGTTGGCAAT+CGG | 0.362122 | 3:-79411960 | MsG0380016128.01.T01:CDS |
| TATCAGCTCACAAAGCTCTT+AGG | 0.381097 | 3:-79411448 | None:intergenic |
| GAGGTGGTAATCTTGGACTT+AGG | 0.389841 | 3:+79411513 | None:intergenic |
| CCGATTGCCAACACGGTGGC+AGG | 0.420233 | 3:+79411960 | None:intergenic |
| AGGTTGACCCCATTCCTTGA+TGG | 0.421592 | 3:+79411533 | None:intergenic |
| AACAAAGGCCATCAAGGAAT+GGG | 0.426157 | 3:-79411541 | MsG0380016128.01.T01:CDS |
| CTGATAGGTTATATCTATCA+AGG | 0.432913 | 3:+79412076 | None:intergenic |
| CTGCCACCGTGTTGGCAATC+GGG | 0.437033 | 3:-79411959 | MsG0380016128.01.T01:CDS |
| TCTTTGAGTCTAAAGTTGGC+AGG | 0.462540 | 3:+79412034 | None:intergenic |
| AAGAAAAGGTGAGTACTGAT+AGG | 0.462698 | 3:+79412061 | None:intergenic |
| TCTTTCTTTGAGTCTAAAGT+TGG | 0.473399 | 3:+79412030 | None:intergenic |
| GTGATGCGGAAATAGTAGTC+AGG | 0.474845 | 3:+79411897 | None:intergenic |
| AAAAGATGAGGTGGTAATCT+TGG | 0.479796 | 3:+79411506 | None:intergenic |
| CAACAAAGGCCATCAAGGAA+TGG | 0.481618 | 3:-79411542 | MsG0380016128.01.T01:CDS |
| AGTAGTCAGGGTATGTGCTC+TGG | 0.502001 | 3:+79411910 | None:intergenic |
| ACCGGGCATGTCCACACCAC+TGG | 0.508071 | 3:+79411477 | None:intergenic |
| GCCATGTACTCGCATACACT+TGG | 0.509273 | 3:+79411630 | None:intergenic |
| TCCAAGTGTATGCGAGTACA+TGG | 0.512057 | 3:-79411631 | MsG0380016128.01.T01:CDS |
| AGTTGGCAGGGAGGAAGAAA+AGG | 0.518931 | 3:+79412047 | None:intergenic |
| CGCCAGGCACAGAGGGCTGA+CGG | 0.520967 | 3:-79411984 | MsG0380016128.01.T01:CDS |
| GGCAGCAACAAAGGCCATCA+AGG | 0.527983 | 3:-79411547 | MsG0380016128.01.T01:CDS |
| TGTGAGCTGATAGTCGGCAC+CGG | 0.530104 | 3:+79411459 | None:intergenic |
| AGGAAAAGAGGCAGCAACAA+AGG | 0.538894 | 3:-79411556 | MsG0380016128.01.T01:CDS |
| TGCAGTCCCGATTGCCAACA+CGG | 0.542887 | 3:+79411953 | None:intergenic |
| TGACGGCCCTGCCACCGTGT+TGG | 0.545438 | 3:-79411967 | MsG0380016128.01.T01:CDS |
| GGACTCAGAAAGAAAGCAAA+GGG | 0.547479 | 3:+79412144 | None:intergenic |
| GGTTATATCTATCAAGGGAT+AGG | 0.549904 | 3:+79412082 | None:intergenic |
| AGTACCAAGACTAGGAAAAG+AGG | 0.550895 | 3:-79411568 | MsG0380016128.01.T01:CDS |
| AAGACAAGACATGGTGGTTG+TGG | 0.550960 | 3:-79411592 | MsG0380016128.01.T01:CDS |
| TCTTGTCTTGCATCCAATGA+AGG | 0.557589 | 3:+79411606 | None:intergenic |
| CTTTGAGTCTAAAGTTGGCA+GGG | 0.559117 | 3:+79412035 | None:intergenic |
| TGAGATCCGCCAGGCACAGA+GGG | 0.572520 | 3:-79411991 | MsG0380016128.01.T01:CDS |
| GACAGTTGATGAGATCCGCC+AGG | 0.581606 | 3:-79412000 | MsG0380016128.01.T01:CDS |
| ACCAGTGGTGTGGACATGCC+CGG | 0.582542 | 3:-79411478 | MsG0380016128.01.T01:CDS |
| GTGAGCTGATAGTCGGCACC+GGG | 0.590423 | 3:+79411460 | None:intergenic |
| GAGCTTTGTGAGCTGATAGT+CGG | 0.596466 | 3:+79411453 | None:intergenic |
| TATGTTCACTGTTTGTGATG+CGG | 0.599298 | 3:+79411883 | None:intergenic |
| CGATTGCCAACACGGTGGCA+GGG | 0.606331 | 3:+79411961 | None:intergenic |
| GGGCATGTCCACACCACTGG+TGG | 0.610981 | 3:+79411480 | None:intergenic |
| TGATGCGGAAATAGTAGTCA+GGG | 0.620998 | 3:+79411898 | None:intergenic |
| AGGACTCAGAAAGAAAGCAA+AGG | 0.635121 | 3:+79412143 | None:intergenic |
| CGTCAGCCCTCTGTGCCTGG+CGG | 0.639933 | 3:+79411985 | None:intergenic |
| TGATAGGTTATATCTATCAA+GGG | 0.640343 | 3:+79412077 | None:intergenic |
| ATTGGATGCAAGACAAGACA+TGG | 0.641833 | 3:-79411601 | MsG0380016128.01.T01:CDS |
| TATCTATCAAGGGATAGGAA+TGG | 0.644835 | 3:+79412087 | None:intergenic |
| ACAAAGGCCATCAAGGAATG+GGG | 0.662909 | 3:-79411540 | MsG0380016128.01.T01:CDS |
| GTTGTGGAAGTACCAAGACT+AGG | 0.667192 | 3:-79411576 | MsG0380016128.01.T01:CDS |
| TGAGTCTAAAGTTGGCAGGG+AGG | 0.671507 | 3:+79412038 | None:intergenic |
| TGCAACTCCTCAAAACTGTG+TGG | 0.671975 | 3:-79411934 | MsG0380016128.01.T01:CDS |
| CACTGGTGGTGCAAAAGATG+AGG | 0.677073 | 3:+79411494 | None:intergenic |
| ATGAGATCCGCCAGGCACAG+AGG | 0.679000 | 3:-79411992 | MsG0380016128.01.T01:CDS |
| TGGTGGTGCAAAAGATGAGG+TGG | 0.689658 | 3:+79411497 | None:intergenic |
| GGATGCAAGACAAGACATGG+TGG | 0.788462 | 3:-79411598 | MsG0380016128.01.T01:CDS |
| AGTCCCGATTGCCAACACGG+TGG | 0.788994 | 3:+79411956 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATAGGTTATATCTATCAA+GGG | + | Chr3:79411525-79411544 | None:intergenic | 25.0% |
| ! | TTAGACTCAAAGAAAGAAAA+TGG | - | Chr3:79411575-79411594 | MsG0380016128.01.T01:CDS | 25.0% |
| !!! | TAAACTGCATATACTTTTTC+AGG | - | Chr3:79411885-79411904 | MsG0380016128.01.T01:CDS | 25.0% |
| AGAGTGAAAGATCAAATTTG+AGG | + | Chr3:79411842-79411861 | None:intergenic | 30.0% | |
| CTGATAGGTTATATCTATCA+AGG | + | Chr3:79411526-79411545 | None:intergenic | 30.0% | |
| ! | TCTTTCTTTGAGTCTAAAGT+TGG | + | Chr3:79411572-79411591 | None:intergenic | 30.0% |
| !!! | AAGTTTTTTGCCACTAAACA+AGG | + | Chr3:79411479-79411498 | None:intergenic | 30.0% |
| AAAAGATGAGGTGGTAATCT+TGG | + | Chr3:79412096-79412115 | None:intergenic | 35.0% | |
| ATACACTTGGATTCTCTTTC+AGG | + | Chr3:79411959-79411978 | None:intergenic | 35.0% | |
| GGTTATATCTATCAAGGGAT+AGG | + | Chr3:79411520-79411539 | None:intergenic | 35.0% | |
| TATCTATCAAGGGATAGGAA+TGG | + | Chr3:79411515-79411534 | None:intergenic | 35.0% | |
| TATGTTCACTGTTTGTGATG+CGG | + | Chr3:79411719-79411738 | None:intergenic | 35.0% | |
| !! | AAGAAAAGGTGAGTACTGAT+AGG | + | Chr3:79411541-79411560 | None:intergenic | 35.0% |
| AACAAAGGCCATCAAGGAAT+GGG | - | Chr3:79412058-79412077 | MsG0380016128.01.T01:five_prime_UTR | 40.0% | |
| AGAGCACGGAAAGATATGTA+TGG | + | Chr3:79411793-79411812 | None:intergenic | 40.0% | |
| AGGACTCAGAAAGAAAGCAA+AGG | + | Chr3:79411459-79411478 | None:intergenic | 40.0% | |
| AGTACCAAGACTAGGAAAAG+AGG | - | Chr3:79412031-79412050 | MsG0380016128.01.T01:five_prime_UTR | 40.0% | |
| ATTGGATGCAAGACAAGACA+TGG | - | Chr3:79411998-79412017 | MsG0380016128.01.T01:CDS | 40.0% | |
| GGACTCAGAAAGAAAGCAAA+GGG | + | Chr3:79411458-79411477 | None:intergenic | 40.0% | |
| TCTTGTCTTGCATCCAATGA+AGG | + | Chr3:79411996-79412015 | None:intergenic | 40.0% | |
| TGATGCGGAAATAGTAGTCA+GGG | + | Chr3:79411704-79411723 | None:intergenic | 40.0% | |
| ! | CTTTCTGAGTCCTTGTTTAG+TGG | - | Chr3:79411466-79411485 | MsG0380016128.01.T01:CDS | 40.0% |
| ! | CTTTGAGTCTAAAGTTGGCA+GGG | + | Chr3:79411567-79411586 | None:intergenic | 40.0% |
| ! | TCTTTGAGTCTAAAGTTGGC+AGG | + | Chr3:79411568-79411587 | None:intergenic | 40.0% |
| AAGACAAGACATGGTGGTTG+TGG | - | Chr3:79412007-79412026 | MsG0380016128.01.T01:CDS | 45.0% | |
| ACAAAGGCCATCAAGGAATG+GGG | - | Chr3:79412059-79412078 | MsG0380016128.01.T01:five_prime_UTR | 45.0% | |
| AGGAAAAGAGGCAGCAACAA+AGG | - | Chr3:79412043-79412062 | MsG0380016128.01.T01:five_prime_UTR | 45.0% | |
| CAACAAAGGCCATCAAGGAA+TGG | - | Chr3:79412057-79412076 | MsG0380016128.01.T01:five_prime_UTR | 45.0% | |
| CAATGTACAAGCACAGAGCA+CGG | + | Chr3:79411807-79411826 | None:intergenic | 45.0% | |
| GAGGTGGTAATCTTGGACTT+AGG | + | Chr3:79412089-79412108 | None:intergenic | 45.0% | |
| GTGATGCGGAAATAGTAGTC+AGG | + | Chr3:79411705-79411724 | None:intergenic | 45.0% | |
| TCCAAGTGTATGCGAGTACA+TGG | - | Chr3:79411968-79411987 | MsG0380016128.01.T01:CDS | 45.0% | |
| TGCAACTCCTCAAAACTGTG+TGG | - | Chr3:79411665-79411684 | MsG0380016128.01.T01:CDS | 45.0% | |
| ! | GAGCTTTGTGAGCTGATAGT+CGG | + | Chr3:79412149-79412168 | None:intergenic | 45.0% |
| !! | GTTGTGGAAGTACCAAGACT+AGG | - | Chr3:79412023-79412042 | MsG0380016128.01.T01:exon | 45.0% |
| AGGTTGACCCCATTCCTTGA+TGG | + | Chr3:79412069-79412088 | None:intergenic | 50.0% | |
| AGTAGTCAGGGTATGTGCTC+TGG | + | Chr3:79411692-79411711 | None:intergenic | 50.0% | |
| AGTTGGCAGGGAGGAAGAAA+AGG | + | Chr3:79411555-79411574 | None:intergenic | 50.0% | |
| CGAGTACATGGCACCTTCAT+TGG | - | Chr3:79411980-79411999 | MsG0380016128.01.T01:CDS | 50.0% | |
| GCCATGTACTCGCATACACT+TGG | + | Chr3:79411972-79411991 | None:intergenic | 50.0% | |
| GGATGCAAGACAAGACATGG+TGG | - | Chr3:79412001-79412020 | MsG0380016128.01.T01:CDS | 50.0% | |
| ! | CACTGGTGGTGCAAAAGATG+AGG | + | Chr3:79412108-79412127 | None:intergenic | 50.0% |
| ! | CTCATCTTTTGCACCACCAG+TGG | - | Chr3:79412106-79412125 | MsG0380016128.01.T01:five_prime_UTR | 50.0% |
| ! | CTCTGGTCCACACAGTTTTG+AGG | + | Chr3:79411675-79411694 | None:intergenic | 50.0% |
| ! | GCTGCCTCTTTTCCTAGTCT+TGG | + | Chr3:79412038-79412057 | None:intergenic | 50.0% |
| ! | TGAGTCTAAAGTTGGCAGGG+AGG | + | Chr3:79411564-79411583 | None:intergenic | 50.0% |
| ! | TGGTGGTGCAAAAGATGAGG+TGG | + | Chr3:79412105-79412124 | None:intergenic | 50.0% |
| GGCAGCAACAAAGGCCATCA+AGG | - | Chr3:79412052-79412071 | MsG0380016128.01.T01:five_prime_UTR | 55.0% | |
| TGCAGTCCCGATTGCCAACA+CGG | + | Chr3:79411649-79411668 | None:intergenic | 55.0% | |
| TGTGAGCTGATAGTCGGCAC+CGG | + | Chr3:79412143-79412162 | None:intergenic | 55.0% | |
| ! | CTTTTGCACCACCAGTGGTG+TGG | - | Chr3:79412111-79412130 | MsG0380016128.01.T01:five_prime_UTR | 55.0% |
| !! | GACAGTTGATGAGATCCGCC+AGG | - | Chr3:79411599-79411618 | MsG0380016128.01.T01:CDS | 55.0% |
| ACCAGTGGTGTGGACATGCC+CGG | - | Chr3:79412121-79412140 | MsG0380016128.01.T01:five_prime_UTR | 60.0% | |
| AGTCCCGATTGCCAACACGG+TGG | + | Chr3:79411646-79411665 | None:intergenic | 60.0% | |
| ATGAGATCCGCCAGGCACAG+AGG | - | Chr3:79411607-79411626 | MsG0380016128.01.T01:CDS | 60.0% | |
| CGATTGCCAACACGGTGGCA+GGG | + | Chr3:79411641-79411660 | None:intergenic | 60.0% | |
| GTGAGCTGATAGTCGGCACC+GGG | + | Chr3:79412142-79412161 | None:intergenic | 60.0% | |
| TGAGATCCGCCAGGCACAGA+GGG | - | Chr3:79411608-79411627 | MsG0380016128.01.T01:CDS | 60.0% | |
| ! | CCTGCCACCGTGTTGGCAAT+CGG | - | Chr3:79411639-79411658 | MsG0380016128.01.T01:CDS | 60.0% |
| ! | CTGCCACCGTGTTGGCAATC+GGG | - | Chr3:79411640-79411659 | MsG0380016128.01.T01:CDS | 60.0% |
| ACCGGGCATGTCCACACCAC+TGG | + | Chr3:79412125-79412144 | None:intergenic | 65.0% | |
| CCGATTGCCAACACGGTGGC+AGG | + | Chr3:79411642-79411661 | None:intergenic | 65.0% | |
| GGGCATGTCCACACCACTGG+TGG | + | Chr3:79412122-79412141 | None:intergenic | 65.0% | |
| CGCCAGGCACAGAGGGCTGA+CGG | - | Chr3:79411615-79411634 | MsG0380016128.01.T01:CDS | 70.0% | |
| CGTCAGCCCTCTGTGCCTGG+CGG | + | Chr3:79411617-79411636 | None:intergenic | 70.0% | |
| TGACGGCCCTGCCACCGTGT+TGG | - | Chr3:79411632-79411651 | MsG0380016128.01.T01:CDS | 70.0% | |
| GGCCGTCAGCCCTCTGTGCC+TGG | + | Chr3:79411620-79411639 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 79411449 | 79412172 | 79411449 | ID=MsG0380016128.01;Name=MsG0380016128.01 |
| Chr3 | mRNA | 79411449 | 79412172 | 79411449 | ID=MsG0380016128.01.T01;Parent=MsG0380016128.01;Name=MsG0380016128.01.T01;_AED=0.39;_eAED=0.39;_QI=145|1|1|1|1|1|2|0|147 |
| Chr3 | exon | 79411449 | 79411714 | 79411449 | ID=MsG0380016128.01.T01:exon:18009;Parent=MsG0380016128.01.T01 |
| Chr3 | exon | 79411850 | 79412172 | 79411850 | ID=MsG0380016128.01.T01:exon:18008;Parent=MsG0380016128.01.T01 |
| Chr3 | five_prime_UTR | 79412028 | 79412172 | 79412028 | ID=MsG0380016128.01.T01:five_prime_utr;Parent=MsG0380016128.01.T01 |
| Chr3 | CDS | 79411850 | 79412027 | 79411850 | ID=MsG0380016128.01.T01:cds;Parent=MsG0380016128.01.T01 |
| Chr3 | CDS | 79411449 | 79411714 | 79411449 | ID=MsG0380016128.01.T01:cds;Parent=MsG0380016128.01.T01 |
| Gene Sequence |
| Protein sequence |
