Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016717.01.T01 | RHN69806.1 | 97.175 | 177 | 5 | 0 | 1 | 177 | 26 | 202 | 5.80E-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016717.01.T01 | A0A2U7XUE3 | 72.316 | 177 | 49 | 0 | 1 | 177 | 33 | 209 | 1.06E-82 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016717.01.T01 | A0A396IVS4 | 97.175 | 177 | 5 | 0 | 1 | 177 | 26 | 202 | 2.77e-122 | 352 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048345.01 | MsG0380016717.01 | 0.805681 | 1.186773e-49 | 6.318303e-47 |
| MsG0080048347.01 | MsG0380016717.01 | 0.853800 | 1.879951e-61 | 4.111167e-58 |
| MsG0080048348.01 | MsG0380016717.01 | 0.814364 | 1.600156e-51 | 1.071519e-48 |
| MsG0080048352.01 | MsG0380016717.01 | 0.846764 | 1.769721e-59 | 3.078452e-56 |
| MsG0080048889.01 | MsG0380016717.01 | 0.812978 | 3.229203e-51 | 2.082579e-48 |
| MsG0080049008.01 | MsG0380016717.01 | 0.807324 | 5.342619e-50 | 2.967049e-47 |
| MsG0180000497.01 | MsG0380016717.01 | 0.806225 | 9.123365e-50 | 4.925290e-47 |
| MsG0180000583.01 | MsG0380016717.01 | 0.834082 | 3.682007e-56 | 4.322821e-53 |
| MsG0180000929.01 | MsG0380016717.01 | 0.815261 | 1.011917e-51 | 6.942706e-49 |
| MsG0180001513.01 | MsG0380016717.01 | 0.802288 | 6.024371e-49 | 2.939875e-46 |
| MsG0180001533.01 | MsG0380016717.01 | 0.811993 | 5.301297e-51 | 3.330297e-48 |
| MsG0180003235.01 | MsG0380016717.01 | 0.804374 | 2.227079e-49 | 1.146427e-46 |
| MsG0180003238.01 | MsG0380016717.01 | 0.822668 | 2.093871e-53 | 1.764145e-50 |
| MsG0180003375.01 | MsG0380016717.01 | 0.803990 | 2.677294e-49 | 1.364703e-46 |
| MsG0180003484.01 | MsG0380016717.01 | 0.829857 | 4.069615e-55 | 4.217182e-52 |
| MsG0180004685.01 | MsG0380016717.01 | 0.817165 | 3.799363e-52 | 2.746253e-49 |
| MsG0180004757.01 | MsG0380016717.01 | 0.801659 | 8.110215e-49 | 3.894763e-46 |
| MsG0180004942.01 | MsG0380016717.01 | 0.807765 | 4.306898e-50 | 2.419384e-47 |
| MsG0180005356.01 | MsG0380016717.01 | 0.841844 | 3.712442e-58 | 5.524496e-55 |
| MsG0180005357.01 | MsG0380016717.01 | 0.826435 | 2.717042e-54 | 2.547934e-51 |
| MsG0180005358.01 | MsG0380016717.01 | 0.824740 | 6.853888e-54 | 6.124520e-51 |
| MsG0180005984.01 | MsG0380016717.01 | 0.809429 | 1.900239e-50 | 1.115451e-47 |
| MsG0280006442.01 | MsG0380016717.01 | 0.812987 | 3.215240e-51 | 2.074072e-48 |
| MsG0280011106.01 | MsG0380016717.01 | 0.838820 | 2.291620e-57 | 3.105292e-54 |
| MsG0280011236.01 | MsG0380016717.01 | 0.828952 | 6.754261e-55 | 6.814247e-52 |
| MsG0280011238.01 | MsG0380016717.01 | 0.821707 | 3.499636e-53 | 2.868812e-50 |
| MsG0380011635.01 | MsG0380016717.01 | 0.803042 | 4.209517e-49 | 2.093941e-46 |
| MsG0380011686.01 | MsG0380016717.01 | 0.805928 | 1.053560e-49 | 5.644491e-47 |
| MsG0380011974.01 | MsG0380016717.01 | 0.822567 | 2.210517e-53 | 1.857184e-50 |
| MsG0380013272.01 | MsG0380016717.01 | 0.839051 | 1.995998e-57 | 2.723783e-54 |
| MsG0380013843.01 | MsG0380016717.01 | 0.823899 | 1.080340e-53 | 9.424384e-51 |
| MsG0380015217.01 | MsG0380016717.01 | 0.815609 | 8.467895e-52 | 5.866117e-49 |
| MsG0380015323.01 | MsG0380016717.01 | 0.824909 | 6.251700e-54 | 5.613442e-51 |
| MsG0380015616.01 | MsG0380016717.01 | 0.808369 | 3.204483e-50 | 1.829000e-47 |
| MsG0380016127.01 | MsG0380016717.01 | 0.824382 | 8.320753e-54 | 7.358059e-51 |
| MsG0380016128.01 | MsG0380016717.01 | 0.816408 | 5.616226e-52 | 3.976227e-49 |
| MsG0380016372.01 | MsG0380016717.01 | 0.815840 | 7.521187e-52 | 5.242720e-49 |
| MsG0380016380.01 | MsG0380016717.01 | -0.828551 | 8.441823e-55 | 8.418660e-52 |
| MsG0380016393.01 | MsG0380016717.01 | 0.829886 | 4.005435e-55 | 4.153696e-52 |
| MsG0380016485.01 | MsG0380016717.01 | 0.802704 | 4.944579e-49 | 2.438623e-46 |
| MsG0380016717.01 | MsG0380017151.01 | 0.815031 | 1.138750e-51 | 7.764213e-49 |
| MsG0380016717.01 | MsG0380017579.01 | 0.808750 | 2.656303e-50 | 1.531207e-47 |
| MsG0380016717.01 | MsG0480018440.01 | 0.822585 | 2.189192e-53 | 1.840232e-50 |
| MsG0380016717.01 | MsG0480018563.01 | 0.806599 | 7.606597e-50 | 4.145625e-47 |
| MsG0380016717.01 | MsG0480019890.01 | 0.802746 | 4.845883e-49 | 2.392523e-46 |
| MsG0380016717.01 | MsG0480021226.01 | 0.821152 | 4.699678e-53 | 3.793213e-50 |
| MsG0380016717.01 | MsG0480022309.01 | 0.802733 | 4.877896e-49 | 2.407510e-46 |
| MsG0380016717.01 | MsG0480022428.01 | 0.815239 | 1.023392e-51 | 7.017000e-49 |
| MsG0380016717.01 | MsG0480022812.01 | 0.822189 | 2.706579e-53 | 2.249177e-50 |
| MsG0380016717.01 | MsG0480022833.01 | 0.821989 | 3.010240e-53 | 2.487394e-50 |
| MsG0380016717.01 | MsG0480023067.01 | 0.830568 | 2.729692e-55 | 2.886752e-52 |
| MsG0380016717.01 | MsG0480023179.01 | 0.853217 | 2.765813e-61 | 5.932144e-58 |
| MsG0380016717.01 | MsG0580024176.01 | 0.825797 | 3.853483e-54 | 3.548686e-51 |
| MsG0380016717.01 | MsG0580024218.01 | 0.840245 | 9.767019e-58 | 1.382993e-54 |
| MsG0380016717.01 | MsG0580024219.01 | 0.807499 | 4.907197e-50 | 2.737649e-47 |
| MsG0380016717.01 | MsG0580024220.01 | 0.842094 | 3.189192e-58 | 4.783612e-55 |
| MsG0380016717.01 | MsG0580024260.01 | 0.832814 | 7.627850e-56 | 8.621523e-53 |
| MsG0380016717.01 | MsG0580024490.01 | 0.846524 | 2.057939e-59 | 3.552188e-56 |
| MsG0380016717.01 | MsG0580024591.01 | 0.849604 | 2.905760e-60 | 5.538171e-57 |
| MsG0380016717.01 | MsG0580025023.01 | 0.807314 | 5.370016e-50 | 2.981472e-47 |
| MsG0380016717.01 | MsG0580025620.01 | 0.813536 | 2.435505e-51 | 1.594779e-48 |
| MsG0380016717.01 | MsG0580025746.01 | 0.838237 | 3.240840e-57 | 4.313647e-54 |
| MsG0380016717.01 | MsG0580026492.01 | 0.803027 | 4.240899e-49 | 2.108701e-46 |
| MsG0380016717.01 | MsG0580027638.01 | 0.851902 | 6.559131e-61 | 1.347227e-57 |
| MsG0380016717.01 | MsG0580028302.01 | 0.818888 | 1.549779e-52 | 1.174628e-49 |
| MsG0380016717.01 | MsG0580029296.01 | 0.815441 | 9.231181e-52 | 6.365149e-49 |
| MsG0380016717.01 | MsG0580030145.01 | 0.823297 | 1.494258e-53 | 1.281474e-50 |
| MsG0380016717.01 | MsG0680030635.01 | -0.826493 | 2.631493e-54 | 2.471603e-51 |
| MsG0380016717.01 | MsG0680031009.01 | 0.802036 | 6.788179e-49 | 3.291258e-46 |
| MsG0380016717.01 | MsG0680032555.01 | 0.821477 | 3.954658e-53 | 3.220773e-50 |
| MsG0380016717.01 | MsG0780036661.01 | 0.832277 | 1.036263e-55 | 1.152583e-52 |
| MsG0380016717.01 | MsG0780036726.01 | 0.802163 | 6.390569e-49 | 3.108572e-46 |
| MsG0380016717.01 | MsG0780037751.01 | 0.825258 | 5.170779e-54 | 4.689084e-51 |
| MsG0380016717.01 | MsG0780038305.01 | 0.818456 | 1.941396e-52 | 1.454077e-49 |
| MsG0380016717.01 | MsG0780039576.01 | 0.835894 | 1.286696e-56 | 1.595070e-53 |
| MsG0380016717.01 | MsG0780039619.01 | 0.834618 | 2.700528e-56 | 3.222052e-53 |
| MsG0380016717.01 | MsG0780039883.01 | 0.803502 | 3.381316e-49 | 1.702032e-46 |
| MsG0380016717.01 | MsG0780039925.01 | 0.819824 | 9.480346e-53 | 7.374623e-50 |
| MsG0380016717.01 | MsG0780040808.01 | 0.805740 | 1.153409e-49 | 6.150138e-47 |
| MsG0380016717.01 | MsG0780040977.01 | 0.809894 | 1.510042e-50 | 8.973253e-48 |
| MsG0380016717.01 | MsG0780040995.01 | 0.807013 | 6.217781e-50 | 3.425139e-47 |
| MsG0380016717.01 | MsG0780041180.01 | 0.827162 | 1.821560e-54 | 1.744453e-51 |
| MsG0380016717.01 | MsG0780041317.01 | 0.807769 | 4.298969e-50 | 2.415161e-47 |
| MsG0380016717.01 | MsG0780041397.01 | 0.838815 | 2.298214e-57 | 3.113798e-54 |
| MsG0380016717.01 | MsG0780041426.01 | 0.803533 | 3.332042e-49 | 1.678587e-46 |
| MsG0380016717.01 | MsG0780041556.01 | 0.833899 | 4.090119e-56 | 4.776447e-53 |
| MsG0380016717.01 | MsG0780041633.01 | 0.824230 | 9.032655e-54 | 7.953372e-51 |
| MsG0380016717.01 | MsG0880042122.01 | 0.802614 | 5.160351e-49 | 2.539138e-46 |
| MsG0380016717.01 | MsG0880042591.01 | 0.817020 | 4.094323e-52 | 2.947921e-49 |
| MsG0380016717.01 | MsG0880042694.01 | 0.818545 | 1.853668e-52 | 1.391669e-49 |
| MsG0380016717.01 | MsG0880042810.01 | 0.815324 | 9.800741e-52 | 6.735986e-49 |
| MsG0380016717.01 | MsG0880043669.01 | 0.806622 | 7.523445e-50 | 4.102474e-47 |
| MsG0380016717.01 | MsG0880043998.01 | 0.813491 | 2.491451e-51 | 1.629477e-48 |
| MsG0380016717.01 | MsG0880045645.01 | 0.815413 | 9.365901e-52 | 6.452695e-49 |
| MsG0380016717.01 | MsG0880046212.01 | 0.811196 | 7.900355e-51 | 4.859231e-48 |
| MsG0380016717.01 | MsG0880046863.01 | 0.823495 | 1.343478e-53 | 1.158663e-50 |
| MsG0380016717.01 | MsG0880047714.01 | 0.831813 | 1.348919e-55 | 1.480395e-52 |
| MsG0280007216.01 | MsG0380016717.01 | 0.803683 | 3.100493e-49 | 1.567887e-46 |
| MsG0280007426.01 | MsG0380016717.01 | 0.843931 | 1.034373e-58 | 1.643737e-55 |
| MsG0280007427.01 | MsG0380016717.01 | 0.822943 | 1.807462e-53 | 1.534704e-50 |
| MsG0280007911.01 | MsG0380016717.01 | 0.824996 | 5.962406e-54 | 5.367053e-51 |
| MsG0280009167.01 | MsG0380016717.01 | 0.848608 | 5.499397e-60 | 1.014716e-56 |
| MsG0280009526.01 | MsG0380016717.01 | 0.818772 | 1.646607e-52 | 1.243983e-49 |
| MsG0280009749.01 | MsG0380016717.01 | 0.807502 | 4.898826e-50 | 2.733174e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016717.01.T01 | MTR_3g093980 | 97.175 | 177 | 5 | 0 | 1 | 177 | 1 | 177 | 2.34e-125 | 350 |
| MsG0380016717.01.T01 | MTR_3g093980 | 97.175 | 177 | 5 | 0 | 1 | 177 | 53 | 229 | 2.03e-124 | 350 |
| MsG0380016717.01.T01 | MTR_3g093980 | 96.800 | 125 | 4 | 0 | 1 | 125 | 33 | 157 | 5.34e-87 | 252 |
| MsG0380016717.01.T01 | MTR_1g115820 | 33.333 | 174 | 107 | 4 | 8 | 176 | 45 | 214 | 9.90e-18 | 77.8 |
| MsG0380016717.01.T01 | MTR_1g115820 | 37.705 | 122 | 72 | 2 | 8 | 128 | 45 | 163 | 1.86e-16 | 73.2 |
| MsG0380016717.01.T01 | MTR_1g115870 | 30.588 | 170 | 113 | 4 | 8 | 173 | 46 | 214 | 7.95e-16 | 72.8 |
| MsG0380016717.01.T01 | MTR_1g115890 | 29.412 | 170 | 115 | 4 | 8 | 173 | 46 | 214 | 1.87e-15 | 71.6 |
| MsG0380016717.01.T01 | MTR_1g115850 | 28.235 | 170 | 115 | 3 | 8 | 173 | 48 | 214 | 2.97e-15 | 71.2 |
| MsG0380016717.01.T01 | MTR_1g115850 | 28.235 | 170 | 115 | 3 | 8 | 173 | 55 | 221 | 3.77e-15 | 70.9 |
| MsG0380016717.01.T01 | MTR_1g115840 | 29.480 | 173 | 113 | 5 | 8 | 175 | 48 | 216 | 1.31e-14 | 69.3 |
| MsG0380016717.01.T01 | MTR_2g072510 | 29.070 | 172 | 114 | 5 | 6 | 175 | 111 | 276 | 5.70e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016717.01.T01 | AT5G05270 | 64.407 | 177 | 62 | 1 | 1 | 176 | 33 | 209 | 9.15e-70 | 211 |
| MsG0380016717.01.T01 | AT5G05270 | 64.407 | 177 | 62 | 1 | 1 | 176 | 33 | 209 | 9.15e-70 | 211 |
| MsG0380016717.01.T01 | AT5G66230 | 30.058 | 173 | 106 | 5 | 13 | 177 | 43 | 208 | 8.26e-15 | 71.6 |
| MsG0380016717.01.T01 | AT3G55120 | 31.720 | 186 | 110 | 7 | 1 | 177 | 49 | 226 | 1.52e-14 | 69.7 |
| MsG0380016717.01.T01 | AT5G66220 | 29.032 | 155 | 102 | 3 | 27 | 177 | 9 | 159 | 7.25e-14 | 66.6 |
| MsG0380016717.01.T01 | AT1G53520 | 25.000 | 172 | 123 | 4 | 5 | 175 | 120 | 286 | 2.00e-12 | 64.3 |
Find 72 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATTCAATTGGGGTTTATT+TGG | 0.127513 | 3:+87014521 | MsG0380016717.01.T01:CDS |
| AGAATTTCACTTGGAGAAAA+TGG | 0.134571 | 3:-87014500 | None:intergenic |
| TTCTTTGACGCTCTCATTTC+TGG | 0.168815 | 3:+87014615 | MsG0380016717.01.T01:CDS |
| TGTTGTGATTAAAGAGATTA+AGG | 0.213746 | 3:+87014869 | MsG0380016717.01.T01:CDS |
| TCCTTCAACCATTACATCTT+TGG | 0.255062 | 3:+87015486 | MsG0380016717.01.T01:CDS |
| ATTGCTTAGGTTGTTATATA+AGG | 0.261912 | 3:-87013903 | None:intergenic |
| AATAAATTGTTATTCTTTGT+TGG | 0.283400 | 3:+87015697 | MsG0380016717.01.T01:three_prime_UTR |
| CAAGTGAAATTCTATTCAAT+TGG | 0.286514 | 3:+87014510 | MsG0380016717.01.T01:CDS |
| AATACAGATTGTGGTATCTT+TGG | 0.300414 | 3:+87015372 | MsG0380016717.01.T01:intron |
| TGCAAGTGGCTTGCTACTTC+AGG | 0.308776 | 3:-87014546 | None:intergenic |
| CACACTCCGTAGCTAAATTA+AGG | 0.334675 | 3:-87013868 | None:intergenic |
| AAGTGAAATTCTATTCAATT+GGG | 0.340514 | 3:+87014511 | MsG0380016717.01.T01:CDS |
| AGTGGCTAGTGAAACTGTTT+TGG | 0.373529 | 3:+87014139 | MsG0380016717.01.T01:intron |
| GAGATTAAGGGTGCACAATA+TGG | 0.383753 | 3:+87014882 | MsG0380016717.01.T01:CDS |
| GGATGAAGAAGAAGAAGCTT+TGG | 0.390087 | 3:+87014959 | MsG0380016717.01.T01:CDS |
| GACTTTCTCCACTTTGTTTG+CGG | 0.390887 | 3:+87015608 | MsG0380016717.01.T01:three_prime_UTR |
| AGCTCTTACTAGTTAGTTGC+TGG | 0.395872 | 3:-87014018 | None:intergenic |
| TTGTCTTCCAACTCCTTGGC+AGG | 0.403272 | 3:-87014585 | None:intergenic |
| TACCAAAACCCTTTCTCTCT+TGG | 0.408116 | 3:+87014196 | MsG0380016717.01.T01:five_prime_UTR |
| ATTAAGAAATGGTATCTTGC+TGG | 0.410454 | 3:+87015448 | MsG0380016717.01.T01:CDS |
| GACCAAGAGAGAAAGGGTTT+TGG | 0.415054 | 3:-87014198 | None:intergenic |
| TCAGCAGTTGGAGAGTTTGC+TGG | 0.419031 | 3:-87015047 | None:intergenic |
| GACCGCTGTGAGGGACCGTT+TGG | 0.422176 | 3:+87014917 | MsG0380016717.01.T01:CDS |
| CTTAATAGTCTCTACTACAT+TGG | 0.428653 | 3:-87015431 | None:intergenic |
| TTGGTAGTAGTGATCTTTGA+AGG | 0.439710 | 3:-87014179 | None:intergenic |
| GTTGTGATTAAAGAGATTAA+GGG | 0.453545 | 3:+87014870 | MsG0380016717.01.T01:CDS |
| TAGAGAGAATTGTGGTGAGA+TGG | 0.457933 | 3:-87013967 | None:intergenic |
| TTCATCCTCATATTTGTCAT+CGG | 0.460901 | 3:-87014943 | None:intergenic |
| ATCATTGTCTTCCAACTCCT+TGG | 0.461782 | 3:-87014589 | None:intergenic |
| TAGTAGAGACTATTAAGAAA+TGG | 0.472191 | 3:+87015437 | MsG0380016717.01.T01:CDS |
| GTTTCTTGAAGTACTTAGAC+TGG | 0.476418 | 3:-87015001 | None:intergenic |
| TTACCATGACCAAGAGAGAA+AGG | 0.491160 | 3:-87014205 | None:intergenic |
| GCCAAAGATGTAATGGTTGA+AGG | 0.506201 | 3:-87015487 | None:intergenic |
| CTTAAGATGAGATGTAAGAA+TGG | 0.508372 | 3:-87013931 | None:intergenic |
| CAGCAGTTGGAGAGTTTGCT+GGG | 0.511362 | 3:-87015046 | None:intergenic |
| TGGATAATTCCTCTGAGAGA+TGG | 0.511898 | 3:-87015513 | None:intergenic |
| CAATTGAATAGAATTTCACT+TGG | 0.511986 | 3:-87014509 | None:intergenic |
| AAGAATGGTAGATATTGCTT+AGG | 0.517256 | 3:-87013916 | None:intergenic |
| AGCTACTTTACCTCAGCAGT+TGG | 0.518480 | 3:-87015059 | None:intergenic |
| AGTCTAATTGCCTTCTCCAC+AGG | 0.518956 | 3:-87014846 | None:intergenic |
| CAGATTGTGGTATCTTTGGA+AGG | 0.521938 | 3:+87015376 | MsG0380016717.01.T01:intron |
| TACCTTTCCACTGTTGCAAG+TGG | 0.522349 | 3:-87014560 | None:intergenic |
| ATGTGCAGCTCCTGTGGAGA+AGG | 0.525875 | 3:+87014836 | MsG0380016717.01.T01:intron |
| AGAGGAAGTAGAGAGAATTG+TGG | 0.528018 | 3:-87013975 | None:intergenic |
| ATGGGTAGCCAAAGATGTAA+TGG | 0.528630 | 3:-87015494 | None:intergenic |
| AACCCTTTCTCTCTTGGTCA+TGG | 0.528839 | 3:+87014202 | MsG0380016717.01.T01:five_prime_UTR |
| TACCATGACCAAGAGAGAAA+GGG | 0.532210 | 3:-87014204 | None:intergenic |
| GGATAATTCCTCTGAGAGAT+GGG | 0.538139 | 3:-87015512 | None:intergenic |
| GTGAATATGTGCAGCTCCTG+TGG | 0.541590 | 3:+87014830 | MsG0380016717.01.T01:intron |
| AATGGTATCTTGCTGGCTCA+AGG | 0.546466 | 3:+87015455 | MsG0380016717.01.T01:CDS |
| CTACCACCTTAATTTAGCTA+CGG | 0.556695 | 3:+87013862 | MsG0380016717.01.T01:five_prime_UTR |
| ATTTGTCATCGGCTGCCAAA+CGG | 0.557673 | 3:-87014932 | None:intergenic |
| AGTGAAATTCTATTCAATTG+GGG | 0.558547 | 3:+87014512 | MsG0380016717.01.T01:CDS |
| TGGTAGTAGTGATCTTTGAA+GGG | 0.566326 | 3:-87014178 | None:intergenic |
| ATGGTATCTTGCTGGCTCAA+GGG | 0.567607 | 3:+87015456 | MsG0380016717.01.T01:CDS |
| AGGTAAGCCTGCCAAGGAGT+TGG | 0.569479 | 3:+87014578 | MsG0380016717.01.T01:CDS |
| TAGCAAGCCACTTGCAACAG+TGG | 0.573061 | 3:+87014553 | MsG0380016717.01.T01:CDS |
| GGCAGCCGATGACAAATATG+AGG | 0.581635 | 3:+87014938 | MsG0380016717.01.T01:CDS |
| CGTAGCTAAATTAAGGTGGT+AGG | 0.585339 | 3:-87013861 | None:intergenic |
| GCAGAATTCCGCAAACAAAG+TGG | 0.588511 | 3:-87015616 | None:intergenic |
| TTTGATAGGGATTACCGACA+TGG | 0.591441 | 3:+87014473 | MsG0380016717.01.T01:intron |
| ATCGATGTAGATAGAGACAG+AGG | 0.592514 | 3:-87013993 | None:intergenic |
| AGCCACTTGCAACAGTGGAA+AGG | 0.600159 | 3:+87014558 | MsG0380016717.01.T01:CDS |
| AGATTGTGGTATCTTTGGAA+GGG | 0.601655 | 3:+87015377 | MsG0380016717.01.T01:intron |
| GTGGAAAGGTAAGCCTGCCA+AGG | 0.623835 | 3:+87014572 | MsG0380016717.01.T01:CDS |
| GAGAAAATGGATCTCCATGT+CGG | 0.629435 | 3:-87014487 | None:intergenic |
| TCAGATTGAGACCGCTGTGA+GGG | 0.629678 | 3:+87014908 | MsG0380016717.01.T01:CDS |
| AGCAAACTCTCCAACTGCTG+AGG | 0.645259 | 3:+87015049 | MsG0380016717.01.T01:CDS |
| TGCCAAACGGTCCCTCACAG+CGG | 0.689378 | 3:-87014919 | None:intergenic |
| TTTGGCTACCCATCTCTCAG+AGG | 0.689828 | 3:+87015504 | MsG0380016717.01.T01:CDS |
| TTCAGATTGAGACCGCTGTG+AGG | 0.696200 | 3:+87014907 | MsG0380016717.01.T01:CDS |
| ACTCCGTAGCTAAATTAAGG+TGG | 0.699822 | 3:-87013865 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAACATTTATGATATAATTA+AGG | - | Chr3:87014776-87014795 | None:intergenic | 15.0% |
| !!! | AAAAAAATTAAGTTGGTTAT+AGG | - | Chr3:87015199-87015218 | None:intergenic | 15.0% |
| !!! | AATTCTGCTTTTTAATTTAT+TGG | + | Chr3:87015631-87015650 | MsG0380016717.01.T01:three_prime_UTR | 15.0% |
| !! | AAAGAAGTTGGATTATAAAA+GGG | - | Chr3:87014652-87014671 | None:intergenic | 20.0% |
| !! | AAGTGAAATTCTATTCAATT+GGG | + | Chr3:87014511-87014530 | MsG0380016717.01.T01:CDS | 20.0% |
| !! | TCAAATCAAGAAAAAGAATT+TGG | - | Chr3:87014265-87014284 | None:intergenic | 20.0% |
| !! | TTGTTAATATTAGTTGAAGT+TGG | - | Chr3:87015311-87015330 | None:intergenic | 20.0% |
| !! | TTTAGACTTAGATTTAAACA+TGG | - | Chr3:87014344-87014363 | None:intergenic | 20.0% |
| !!! | AACTAATTCTAAGAATGAAT+AGG | - | Chr3:87015117-87015136 | None:intergenic | 20.0% |
| !!! | CTTGATTTGATTTTGAATAT+GGG | + | Chr3:87014275-87014294 | MsG0380016717.01.T01:intron | 20.0% |
| !!! | GAATTAGTTAAGTTGATTTT+AGG | + | Chr3:87015128-87015147 | MsG0380016717.01.T01:intron | 20.0% |
| !!! | TCTTGATTTGATTTTGAATA+TGG | + | Chr3:87014274-87014293 | MsG0380016717.01.T01:intron | 20.0% |
| ! | AAGATATTATCGAAAGAAGT+TGG | - | Chr3:87014664-87014683 | None:intergenic | 25.0% |
| ! | AGAATGAATAGGATCAATTA+AGG | - | Chr3:87015106-87015125 | None:intergenic | 25.0% |
| ! | AGTGAAATTCTATTCAATTG+GGG | + | Chr3:87014512-87014531 | MsG0380016717.01.T01:CDS | 25.0% |
| ! | CAAGTGAAATTCTATTCAAT+TGG | + | Chr3:87014510-87014529 | MsG0380016717.01.T01:CDS | 25.0% |
| ! | CAATTGAATAGAATTTCACT+TGG | - | Chr3:87014512-87014531 | None:intergenic | 25.0% |
| ! | GAAAGAAGTTGGATTATAAA+AGG | - | Chr3:87014653-87014672 | None:intergenic | 25.0% |
| ! | GAATTTGGAAGAATTTCAAA+AGG | - | Chr3:87014250-87014269 | None:intergenic | 25.0% |
| ! | GAGCTCATCTATTTATTATT+TGG | + | Chr3:87014724-87014743 | MsG0380016717.01.T01:intron | 25.0% |
| ! | GTTGTGATTAAAGAGATTAA+GGG | + | Chr3:87014870-87014889 | MsG0380016717.01.T01:CDS | 25.0% |
| ! | TAGTAGAGACTATTAAGAAA+TGG | + | Chr3:87015437-87015456 | MsG0380016717.01.T01:CDS | 25.0% |
| ! | TATGAGATTTGAATTTCATC+CGG | + | Chr3:87015238-87015257 | MsG0380016717.01.T01:intron | 25.0% |
| ! | TGTTGTGATTAAAGAGATTA+AGG | + | Chr3:87014869-87014888 | MsG0380016717.01.T01:CDS | 25.0% |
| !! | ATTGCTTAGGTTGTTATATA+AGG | - | Chr3:87013906-87013925 | None:intergenic | 25.0% |
| !! | GGAAAATCAAGTTATTGATT+TGG | - | Chr3:87014450-87014469 | None:intergenic | 25.0% |
| !! | TTGATTTTCCTCTTTTGATA+GGG | + | Chr3:87014460-87014479 | MsG0380016717.01.T01:intron | 25.0% |
| !!! | TAAGAGTTTGATTTTGTAAC+CGG | - | Chr3:87015260-87015279 | None:intergenic | 25.0% |
| AAGAATGGTAGATATTGCTT+AGG | - | Chr3:87013919-87013938 | None:intergenic | 30.0% | |
| AATACAGATTGTGGTATCTT+TGG | + | Chr3:87015372-87015391 | MsG0380016717.01.T01:intron | 30.0% | |
| ACAACAAACAATCATCACAT+TGG | - | Chr3:87015352-87015371 | None:intergenic | 30.0% | |
| AGAATTTCACTTGGAGAAAA+TGG | - | Chr3:87014503-87014522 | None:intergenic | 30.0% | |
| AGGTAGTTACAATTACAAGT+TGG | + | Chr3:87015148-87015167 | MsG0380016717.01.T01:intron | 30.0% | |
| ATTAAGAAATGGTATCTTGC+TGG | + | Chr3:87015448-87015467 | MsG0380016717.01.T01:CDS | 30.0% | |
| CTATTCAATTGGGGTTTATT+TGG | + | Chr3:87014521-87014540 | MsG0380016717.01.T01:CDS | 30.0% | |
| CTTAAGATGAGATGTAAGAA+TGG | - | Chr3:87013934-87013953 | None:intergenic | 30.0% | |
| CTTAATAGTCTCTACTACAT+TGG | - | Chr3:87015434-87015453 | None:intergenic | 30.0% | |
| GTTTGTGAATTTGATTACAG+TGG | + | Chr3:87014121-87014140 | MsG0380016717.01.T01:intron | 30.0% | |
| TTCATCCTCATATTTGTCAT+CGG | - | Chr3:87014946-87014965 | None:intergenic | 30.0% | |
| ! | AACACAAAGTTTTCTTCACT+TGG | - | Chr3:87015536-87015555 | None:intergenic | 30.0% |
| ! | CTTGATTTTCCTCTTTTGAT+AGG | + | Chr3:87014459-87014478 | MsG0380016717.01.T01:intron | 30.0% |
| !! | AGTTACAATTACAAGTTGGT+TGG | + | Chr3:87015152-87015171 | MsG0380016717.01.T01:intron | 30.0% |
| !! | GTTTGTTGTAATACAGATTG+TGG | + | Chr3:87015363-87015382 | MsG0380016717.01.T01:intron | 30.0% |
| !!! | GCTGCTATTTTGTACTAATT+GGG | + | Chr3:87015586-87015605 | MsG0380016717.01.T01:three_prime_UTR | 30.0% |
| !!! | TGCTGCTATTTTGTACTAAT+TGG | + | Chr3:87015585-87015604 | MsG0380016717.01.T01:three_prime_UTR | 30.0% |
| CTAAAAGTAGCAAGAGATGT+AGG | + | Chr3:87014390-87014409 | MsG0380016717.01.T01:intron | 35.0% | |
| CTACCACCTTAATTTAGCTA+CGG | + | Chr3:87013862-87013881 | MsG0380016717.01.T01:five_prime_UTR | 35.0% | |
| TCCTTCAACCATTACATCTT+TGG | + | Chr3:87015486-87015505 | MsG0380016717.01.T01:CDS | 35.0% | |
| TGGTAGTAGTGATCTTTGAA+GGG | - | Chr3:87014181-87014200 | None:intergenic | 35.0% | |
| ! | AGATTGTGGTATCTTTGGAA+GGG | + | Chr3:87015377-87015396 | MsG0380016717.01.T01:intron | 35.0% |
| ! | GTTTCTTGAAGTACTTAGAC+TGG | - | Chr3:87015004-87015023 | None:intergenic | 35.0% |
| ! | TTGGTAGTAGTGATCTTTGA+AGG | - | Chr3:87014182-87014201 | None:intergenic | 35.0% |
| ACTCCGTAGCTAAATTAAGG+TGG | - | Chr3:87013868-87013887 | None:intergenic | 40.0% | |
| AGAGGAAGTAGAGAGAATTG+TGG | - | Chr3:87013978-87013997 | None:intergenic | 40.0% | |
| AGCTCTTACTAGTTAGTTGC+TGG | - | Chr3:87014021-87014040 | None:intergenic | 40.0% | |
| ATCATTGTCTTCCAACTCCT+TGG | - | Chr3:87014592-87014611 | None:intergenic | 40.0% | |
| ATCGATGTAGATAGAGACAG+AGG | - | Chr3:87013996-87014015 | None:intergenic | 40.0% | |
| ATGGGTAGCCAAAGATGTAA+TGG | - | Chr3:87015497-87015516 | None:intergenic | 40.0% | |
| CACACTCCGTAGCTAAATTA+AGG | - | Chr3:87013871-87013890 | None:intergenic | 40.0% | |
| CAGATTGTGGTATCTTTGGA+AGG | + | Chr3:87015376-87015395 | MsG0380016717.01.T01:intron | 40.0% | |
| CGTAGCTAAATTAAGGTGGT+AGG | - | Chr3:87013864-87013883 | None:intergenic | 40.0% | |
| GAGAAAATGGATCTCCATGT+CGG | - | Chr3:87014490-87014509 | None:intergenic | 40.0% | |
| GCCAAAGATGTAATGGTTGA+AGG | - | Chr3:87015490-87015509 | None:intergenic | 40.0% | |
| GGATGAAGAAGAAGAAGCTT+TGG | + | Chr3:87014959-87014978 | MsG0380016717.01.T01:CDS | 40.0% | |
| GTAAAGTAGCTAGCAGCATT+AGG | + | Chr3:87015071-87015090 | MsG0380016717.01.T01:intron | 40.0% | |
| TACCAAAACCCTTTCTCTCT+TGG | + | Chr3:87014196-87014215 | MsG0380016717.01.T01:five_prime_UTR | 40.0% | |
| TACCATGACCAAGAGAGAAA+GGG | - | Chr3:87014207-87014226 | None:intergenic | 40.0% | |
| TAGAGAGAATTGTGGTGAGA+TGG | - | Chr3:87013970-87013989 | None:intergenic | 40.0% | |
| TCGGTAATCCCTATCAAAAG+AGG | - | Chr3:87014471-87014490 | None:intergenic | 40.0% | |
| TTACCATGACCAAGAGAGAA+AGG | - | Chr3:87014208-87014227 | None:intergenic | 40.0% | |
| TTCTTTGACGCTCTCATTTC+TGG | + | Chr3:87014615-87014634 | MsG0380016717.01.T01:CDS | 40.0% | |
| TTTGATAGGGATTACCGACA+TGG | + | Chr3:87014473-87014492 | MsG0380016717.01.T01:intron | 40.0% | |
| ! | AGTGGCTAGTGAAACTGTTT+TGG | + | Chr3:87014139-87014158 | MsG0380016717.01.T01:intron | 40.0% |
| ! | GACTTTCTCCACTTTGTTTG+CGG | + | Chr3:87015608-87015627 | MsG0380016717.01.T01:three_prime_UTR | 40.0% |
| ! | GAGATTAAGGGTGCACAATA+TGG | + | Chr3:87014882-87014901 | MsG0380016717.01.T01:CDS | 40.0% |
| ! | GGATAATTCCTCTGAGAGAT+GGG | - | Chr3:87015515-87015534 | None:intergenic | 40.0% |
| ! | TGGATAATTCCTCTGAGAGA+TGG | - | Chr3:87015516-87015535 | None:intergenic | 40.0% |
| AACCCTTTCTCTCTTGGTCA+TGG | + | Chr3:87014202-87014221 | MsG0380016717.01.T01:five_prime_UTR | 45.0% | |
| AGTCTAATTGCCTTCTCCAC+AGG | - | Chr3:87014849-87014868 | None:intergenic | 45.0% | |
| GCAGAATTCCGCAAACAAAG+TGG | - | Chr3:87015619-87015638 | None:intergenic | 45.0% | |
| TACCTTTCCACTGTTGCAAG+TGG | - | Chr3:87014563-87014582 | None:intergenic | 45.0% | |
| ! | AGCTACTTTACCTCAGCAGT+TGG | - | Chr3:87015062-87015081 | None:intergenic | 45.0% |
| ! | ATTTGTCATCGGCTGCCAAA+CGG | - | Chr3:87014935-87014954 | None:intergenic | 45.0% |
| ! | GACCAAGAGAGAAAGGGTTT+TGG | - | Chr3:87014201-87014220 | None:intergenic | 45.0% |
| !! | AATGGTATCTTGCTGGCTCA+AGG | + | Chr3:87015455-87015474 | MsG0380016717.01.T01:CDS | 45.0% |
| !! | ATGGTATCTTGCTGGCTCAA+GGG | + | Chr3:87015456-87015475 | MsG0380016717.01.T01:CDS | 45.0% |
| !! | TAAAAAAAAAAAAATTAAGT+TGG | - | Chr3:87015206-87015225 | None:intergenic | 5.0% |
| AGCAAACTCTCCAACTGCTG+AGG | + | Chr3:87015049-87015068 | MsG0380016717.01.T01:CDS | 50.0% | |
| AGCCACTTGCAACAGTGGAA+AGG | + | Chr3:87014558-87014577 | MsG0380016717.01.T01:CDS | 50.0% | |
| GGCAGCCGATGACAAATATG+AGG | + | Chr3:87014938-87014957 | MsG0380016717.01.T01:CDS | 50.0% | |
| GTGAATATGTGCAGCTCCTG+TGG | + | Chr3:87014830-87014849 | MsG0380016717.01.T01:intron | 50.0% | |
| TAGCAAGCCACTTGCAACAG+TGG | + | Chr3:87014553-87014572 | MsG0380016717.01.T01:CDS | 50.0% | |
| TCAGATTGAGACCGCTGTGA+GGG | + | Chr3:87014908-87014927 | MsG0380016717.01.T01:CDS | 50.0% | |
| TCAGCAGTTGGAGAGTTTGC+TGG | - | Chr3:87015050-87015069 | None:intergenic | 50.0% | |
| TTCAGATTGAGACCGCTGTG+AGG | + | Chr3:87014907-87014926 | MsG0380016717.01.T01:CDS | 50.0% | |
| TTGTCTTCCAACTCCTTGGC+AGG | - | Chr3:87014588-87014607 | None:intergenic | 50.0% | |
| TTTGGCTACCCATCTCTCAG+AGG | + | Chr3:87015504-87015523 | MsG0380016717.01.T01:CDS | 50.0% | |
| ! | CAGCAGTTGGAGAGTTTGCT+GGG | - | Chr3:87015049-87015068 | None:intergenic | 50.0% |
| !! | TGCAAGTGGCTTGCTACTTC+AGG | - | Chr3:87014549-87014568 | None:intergenic | 50.0% |
| AGGTAAGCCTGCCAAGGAGT+TGG | + | Chr3:87014578-87014597 | MsG0380016717.01.T01:CDS | 55.0% | |
| ATGTGCAGCTCCTGTGGAGA+AGG | + | Chr3:87014836-87014855 | MsG0380016717.01.T01:intron | 55.0% | |
| GTGGAAAGGTAAGCCTGCCA+AGG | + | Chr3:87014572-87014591 | MsG0380016717.01.T01:CDS | 55.0% | |
| TGCCAAACGGTCCCTCACAG+CGG | - | Chr3:87014922-87014941 | None:intergenic | 60.0% | |
| GACCGCTGTGAGGGACCGTT+TGG | + | Chr3:87014917-87014936 | MsG0380016717.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 87013845 | 87015716 | 87013845 | ID=MsG0380016717.01;Name=MsG0380016717.01 |
| Chr3 | mRNA | 87013845 | 87015716 | 87013845 | ID=MsG0380016717.01.T01;Parent=MsG0380016717.01;Name=MsG0380016717.01.T01;_AED=0.25;_eAED=0.25;_QI=281|1|1|1|0.5|0.4|5|176|177 |
| Chr3 | exon | 87013845 | 87014031 | 87013845 | ID=MsG0380016717.01.T01:exon:22035;Parent=MsG0380016717.01.T01 |
| Chr3 | exon | 87014141 | 87014223 | 87014141 | ID=MsG0380016717.01.T01:exon:22036;Parent=MsG0380016717.01.T01 |
| Chr3 | exon | 87014481 | 87014636 | 87014481 | ID=MsG0380016717.01.T01:exon:22037;Parent=MsG0380016717.01.T01 |
| Chr3 | exon | 87014844 | 87015070 | 87014844 | ID=MsG0380016717.01.T01:exon:22038;Parent=MsG0380016717.01.T01 |
| Chr3 | exon | 87015379 | 87015716 | 87015379 | ID=MsG0380016717.01.T01:exon:22039;Parent=MsG0380016717.01.T01 |
| Chr3 | five_prime_UTR | 87013845 | 87014031 | 87013845 | ID=MsG0380016717.01.T01:five_prime_utr;Parent=MsG0380016717.01.T01 |
| Chr3 | five_prime_UTR | 87014141 | 87014223 | 87014141 | ID=MsG0380016717.01.T01:five_prime_utr;Parent=MsG0380016717.01.T01 |
| Chr3 | five_prime_UTR | 87014481 | 87014491 | 87014481 | ID=MsG0380016717.01.T01:five_prime_utr;Parent=MsG0380016717.01.T01 |
| Chr3 | CDS | 87014492 | 87014636 | 87014492 | ID=MsG0380016717.01.T01:cds;Parent=MsG0380016717.01.T01 |
| Chr3 | CDS | 87014844 | 87015070 | 87014844 | ID=MsG0380016717.01.T01:cds;Parent=MsG0380016717.01.T01 |
| Chr3 | CDS | 87015379 | 87015540 | 87015379 | ID=MsG0380016717.01.T01:cds;Parent=MsG0380016717.01.T01 |
| Chr3 | three_prime_UTR | 87015541 | 87015716 | 87015541 | ID=MsG0380016717.01.T01:three_prime_utr;Parent=MsG0380016717.01.T01 |
| Gene Sequence |
| Protein sequence |
