AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016361.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016361.01.T01 MTR_4g029360 50.877 114 27 1 5 89 114 227 6.20e-28 101
MsG0380016361.01.T01 MTR_8g022750 42.708 96 43 1 5 88 192 287 2.94e-19 80.1
MsG0380016361.01.T01 MTR_6g045427 50.000 74 36 1 5 77 160 233 1.36e-18 77.8
MsG0380016361.01.T01 MTR_6g089560 35.238 105 39 1 2 77 100 204 2.80e-18 76.6
MsG0380016361.01.T01 MTR_1g088650 38.462 117 43 1 5 92 73 189 3.44e-18 75.5
MsG0380016361.01.T01 MTR_8g098925 48.485 66 34 0 21 86 97 162 7.68e-18 73.9
MsG0380016361.01.T01 MTR_2g047100 40.816 98 44 2 5 88 5 102 8.52e-18 72.4
MsG0380016361.01.T01 MTR_4g064590 44.578 83 42 2 21 103 60 138 7.56e-17 71.6
MsG0380016361.01.T01 MTR_5g075610 44.000 75 40 1 21 95 27 99 8.60e-17 69.7
MsG0380016361.01.T01 MTR_8g028785 41.053 95 51 1 3 92 267 361 1.11e-16 73.9
MsG0380016361.01.T01 MTR_1g103580 43.820 89 27 1 5 93 147 212 1.92e-16 72.4
MsG0380016361.01.T01 MTR_5g022720 55.357 56 25 0 36 91 1 56 1.13e-15 70.5
MsG0380016361.01.T01 MTR_1g017840 37.113 97 32 1 5 72 65 161 1.32e-15 68.2
MsG0380016361.01.T01 MTR_5g037920 35.294 119 48 2 5 94 85 203 6.41e-15 67.8
MsG0380016361.01.T01 MTR_2g088140 67.442 43 14 0 50 92 49 91 9.00e-15 65.1
MsG0380016361.01.T01 MTR_8g005560 49.123 57 29 0 36 92 1 57 8.48e-14 63.2
MsG0380016361.01.T01 MTR_7g006380 34.343 99 51 2 2 92 50 142 7.15e-13 61.6
MsG0380016361.01.T01 MTR_0093s0070 52.941 51 24 0 21 71 155 205 8.29e-13 61.6
MsG0380016361.01.T01 MTR_4g128080 50.000 64 31 1 41 103 6 69 1.87e-12 57.8
MsG0380016361.01.T01 MTR_1g101650 39.560 91 49 3 2 92 80 164 8.14e-11 56.2
MsG0380016361.01.T03 MTR_4g029360 68.421 114 36 0 13 126 114 227 6.85e-49 156
MsG0380016361.01.T03 MTR_6g089560 52.381 105 50 0 10 114 100 204 5.74e-38 129
MsG0380016361.01.T03 MTR_8g098925 58.511 94 39 0 30 123 69 162 5.54e-36 122
MsG0380016361.01.T03 MTR_1g017840 54.639 97 44 0 13 109 65 161 4.34e-34 117
MsG0380016361.01.T03 MTR_1g088650 49.573 117 59 0 13 129 73 189 5.95e-32 112
MsG0380016361.01.T03 MTR_0093s0070 60.494 81 32 0 28 108 125 205 2.11e-29 106
MsG0380016361.01.T03 MTR_7g013520 53.684 95 44 0 13 107 57 151 1.32e-28 103
MsG0380016361.01.T03 MTR_8g099580 47.475 99 52 0 11 109 191 289 3.40e-28 105
MsG0380016361.01.T03 MTR_5g037920 42.748 131 71 3 1 130 75 202 9.51e-28 102
MsG0380016361.01.T03 MTR_5g075610 46.535 101 52 1 32 132 1 99 1.57e-26 95.9
MsG0380016361.01.T03 MTR_7g063280 39.655 116 67 1 13 128 62 174 2.29e-26 97.8
MsG0380016361.01.T03 MTR_2g059470 50.000 82 41 0 28 109 2 83 1.03e-23 88.2
MsG0380016361.01.T03 MTR_2g047100 42.105 114 49 2 13 125 5 102 1.24e-23 88.6
MsG0380016361.01.T03 MTR_1g034430 43.000 100 57 0 13 112 82 181 3.21e-23 89.7
MsG0380016361.01.T03 MTR_6g016265 40.187 107 64 0 6 112 19 125 1.10e-22 87.0
MsG0380016361.01.T03 MTR_5g034450 46.914 81 43 0 9 89 32 112 2.23e-22 85.9
MsG0380016361.01.T03 MTR_3g116210 35.514 107 69 0 3 109 74 180 7.24e-22 86.7
MsG0380016361.01.T03 MTR_2g027020 41.176 119 62 3 13 129 15 127 7.31e-22 86.7
MsG0380016361.01.T03 MTR_1g074090 45.455 88 48 0 4 91 59 146 1.39e-21 84.7
MsG0380016361.01.T03 MTR_8g022750 40.708 113 50 1 13 125 192 287 3.31e-21 86.7
MsG0380016361.01.T03 MTR_6g033225 50.633 79 39 0 13 91 57 135 4.13e-21 83.2
MsG0380016361.01.T03 MTR_5g085210 42.268 97 56 0 13 109 106 202 5.54e-21 85.1
MsG0380016361.01.T03 MTR_1g022215 50.000 68 34 0 13 80 1 68 1.21e-20 80.5
MsG0380016361.01.T03 MTR_4g064590 52.174 92 38 3 46 135 46 133 2.02e-20 82.0
MsG0380016361.01.T03 MTR_5g049680 45.570 79 43 0 11 89 16 94 2.20e-20 80.5
MsG0380016361.01.T03 MTR_0015s0120 48.315 89 46 0 11 99 278 366 2.45e-20 85.5
MsG0380016361.01.T03 MTR_6g453270 40.426 94 56 0 13 106 287 380 1.88e-19 83.2
MsG0380016361.01.T03 MTR_2g017550 53.030 66 31 0 13 78 95 160 2.39e-19 79.3
MsG0380016361.01.T03 MTR_5g036320 42.169 83 48 0 7 89 60 142 3.11e-19 78.6
MsG0380016361.01.T03 MTR_1g069475 38.710 93 57 0 13 105 151 243 3.48e-19 80.9
MsG0380016361.01.T03 MTR_8g031800 48.750 80 41 0 14 93 19 98 4.88e-19 77.0
MsG0380016361.01.T03 MTR_1g018300 40.777 103 55 1 9 111 46 142 1.33e-18 79.3
MsG0380016361.01.T03 MTR_1g045340 33.628 113 75 0 10 122 68 180 2.44e-18 77.0
MsG0380016361.01.T03 MTR_6g045427 40.196 102 33 1 13 114 160 233 2.90e-18 78.2
MsG0380016361.01.T03 MTR_4g008270 42.169 83 48 0 27 109 11 93 3.60e-18 74.3
MsG0380016361.01.T03 MTR_8g079540 44.444 81 45 0 14 94 36 116 3.62e-18 75.1
MsG0380016361.01.T03 MTR_6g046670 57.576 66 28 0 14 79 111 176 7.81e-18 76.3
MsG0380016361.01.T03 MTR_8g028785 37.815 119 50 1 11 129 267 361 9.33e-18 78.2
MsG0380016361.01.T03 MTR_1g081930 37.255 102 64 0 13 114 25 126 1.25e-17 73.9
MsG0380016361.01.T03 MTR_5g083200 31.858 113 77 0 10 122 82 194 2.41e-17 75.1
MsG0380016361.01.T03 MTR_0002s1220 31.858 113 77 0 10 122 82 194 2.41e-17 75.1
MsG0380016361.01.T03 MTR_8g059135 35.849 106 65 2 16 120 19 122 5.11e-17 72.4
MsG0380016361.01.T03 MTR_1g050488 38.824 85 52 0 8 92 80 164 8.42e-17 72.8
MsG0380016361.01.T03 MTR_6g016355 41.026 78 46 0 11 88 101 178 1.01e-16 72.8
MsG0380016361.01.T03 MTR_8g038340 46.575 73 39 0 11 83 174 246 2.13e-16 73.2
MsG0380016361.01.T03 MTR_3g111390 30.088 113 79 0 10 122 82 194 4.30e-16 71.6
MsG0380016361.01.T03 MTR_1g070820 30.088 113 79 0 10 122 82 194 4.30e-16 71.6
MsG0380016361.01.T03 MTR_5g022720 55.357 56 25 0 73 128 1 56 1.65e-15 71.2
MsG0380016361.01.T03 MTR_7g078610 48.387 62 32 0 7 68 32 93 1.75e-15 67.4
MsG0380016361.01.T03 MTR_1g054905 57.895 57 24 0 13 69 88 144 5.82e-15 67.8
MsG0380016361.01.T03 MTR_2g088140 67.442 43 14 0 87 129 49 91 1.06e-14 66.2
MsG0380016361.01.T03 MTR_7g006380 31.667 120 55 1 10 129 50 142 1.40e-14 67.4
MsG0380016361.01.T03 MTR_6g034915 28.289 152 62 2 8 129 7 141 1.60e-14 67.0
MsG0380016361.01.T03 MTR_8g036780 35.789 95 61 0 4 98 12 106 1.81e-14 65.5
MsG0380016361.01.T03 MTR_1g074240 44.776 67 37 0 29 95 3 69 1.87e-14 64.3
MsG0380016361.01.T03 MTR_1g099430 45.205 73 38 1 13 83 112 184 7.93e-14 65.9
MsG0380016361.01.T03 MTR_8g005560 50.000 56 28 0 73 128 1 56 1.20e-13 63.9
MsG0380016361.01.T03 MTR_4g094272 50.000 60 29 1 14 73 82 140 1.47e-13 63.9
MsG0380016361.01.T03 MTR_1g109000 36.471 85 54 0 1 85 1 85 4.43e-13 61.2
MsG0380016361.01.T03 MTR_8g088220 39.474 76 46 0 34 109 2 77 5.59e-13 60.5
MsG0380016361.01.T03 MTR_8g031080 35.897 117 49 2 13 129 276 366 8.14e-13 64.7
MsG0380016361.01.T03 MTR_4g128080 50.000 64 31 1 78 140 6 69 2.47e-12 58.5
MsG0380016361.01.T03 MTR_8g045330 42.466 73 41 1 10 82 81 152 4.10e-12 60.5
MsG0380016361.01.T03 MTR_2g055490 51.786 56 27 0 31 86 12 67 4.55e-12 59.3
MsG0380016361.01.T03 MTR_8g036690 39.726 73 28 1 57 129 2 58 6.52e-12 57.8
MsG0380016361.01.T03 MTR_1g062840 39.706 68 41 0 54 121 8 75 1.75e-11 57.0
MsG0380016361.01.T03 MTR_4g094370 44.643 56 31 0 13 68 22 77 5.48e-11 55.5
MsG0380016361.01.T03 MTR_4g046027 49.153 59 30 0 10 68 111 169 9.28e-11 57.0
MsG0380016361.01.T04 MTR_4g029360 68.421 114 36 0 4 117 114 227 5.34e-49 156
MsG0380016361.01.T04 MTR_6g089560 52.381 105 50 0 1 105 100 204 4.94e-38 129
MsG0380016361.01.T04 MTR_8g098925 58.511 94 39 0 21 114 69 162 3.31e-36 122
MsG0380016361.01.T04 MTR_1g017840 54.639 97 44 0 4 100 65 161 2.99e-34 117
MsG0380016361.01.T04 MTR_1g088650 49.573 117 59 0 4 120 73 189 4.04e-32 112
MsG0380016361.01.T04 MTR_0093s0070 60.494 81 32 0 19 99 125 205 1.60e-29 106
MsG0380016361.01.T04 MTR_7g013520 53.684 95 44 0 4 98 57 151 1.04e-28 103
MsG0380016361.01.T04 MTR_8g099580 47.475 99 52 0 2 100 191 289 2.34e-28 105
MsG0380016361.01.T04 MTR_5g037920 45.378 119 63 2 4 121 85 202 1.58e-27 101
MsG0380016361.01.T04 MTR_5g075610 46.535 101 52 1 23 123 1 99 1.10e-26 95.9
MsG0380016361.01.T04 MTR_7g063280 39.316 117 68 1 4 120 62 175 2.08e-26 97.4
MsG0380016361.01.T04 MTR_2g059470 50.000 82 41 0 19 100 2 83 6.21e-24 88.6
MsG0380016361.01.T04 MTR_2g047100 42.105 114 49 2 4 116 5 102 6.34e-24 89.0
MsG0380016361.01.T04 MTR_1g034430 43.000 100 57 0 4 103 82 181 1.72e-23 90.1
MsG0380016361.01.T04 MTR_6g016265 42.000 100 58 0 4 103 26 125 1.47e-22 86.3
MsG0380016361.01.T04 MTR_2g027020 41.176 119 62 3 4 120 15 127 4.28e-22 86.7
MsG0380016361.01.T04 MTR_5g034450 46.835 79 42 0 2 80 34 112 1.05e-21 83.6
MsG0380016361.01.T04 MTR_8g022750 41.071 112 49 1 4 115 192 286 2.43e-21 87.0
MsG0380016361.01.T04 MTR_5g085210 42.268 97 56 0 4 100 106 202 3.47e-21 85.5
MsG0380016361.01.T04 MTR_6g033225 50.633 79 39 0 4 82 57 135 3.58e-21 83.2
MsG0380016361.01.T04 MTR_1g074090 48.101 79 41 0 4 82 68 146 5.28e-21 82.8
MsG0380016361.01.T04 MTR_1g022215 50.000 68 34 0 4 71 1 68 8.77e-21 80.5
MsG0380016361.01.T04 MTR_4g064590 52.174 92 38 3 37 126 46 133 1.37e-20 82.0
MsG0380016361.01.T04 MTR_5g049680 45.570 79 43 0 2 80 16 94 1.51e-20 80.5
MsG0380016361.01.T04 MTR_0015s0120 48.315 89 46 0 2 90 278 366 1.71e-20 85.5
MsG0380016361.01.T04 MTR_3g116210 37.113 97 61 0 4 100 84 180 1.89e-20 82.4
MsG0380016361.01.T04 MTR_6g453270 40.426 94 56 0 4 97 287 380 1.04e-19 83.6
MsG0380016361.01.T04 MTR_1g069475 38.710 93 57 0 4 96 151 243 2.10e-19 80.9
MsG0380016361.01.T04 MTR_5g036320 44.304 79 44 0 2 80 64 142 2.14e-19 78.6
MsG0380016361.01.T04 MTR_2g017550 53.030 66 31 0 4 69 95 160 2.36e-19 79.0
MsG0380016361.01.T04 MTR_8g031800 48.750 80 41 0 5 84 19 98 3.74e-19 77.0
MsG0380016361.01.T04 MTR_1g018300 41.176 102 54 1 1 102 47 142 8.61e-19 79.7
MsG0380016361.01.T04 MTR_6g045427 40.196 102 33 1 4 105 160 233 1.64e-18 78.6
MsG0380016361.01.T04 MTR_1g045340 33.628 113 75 0 1 113 68 180 1.79e-18 77.4
MsG0380016361.01.T04 MTR_8g079540 44.444 81 45 0 5 85 36 116 2.02e-18 75.5
MsG0380016361.01.T04 MTR_4g008270 42.169 83 48 0 18 100 11 93 2.60e-18 74.3
MsG0380016361.01.T04 MTR_6g046670 57.576 66 28 0 5 70 111 176 5.40e-18 76.3
MsG0380016361.01.T04 MTR_8g028785 37.815 119 50 1 2 120 267 361 6.63e-18 78.6
MsG0380016361.01.T04 MTR_1g081930 37.255 102 64 0 4 105 25 126 8.82e-18 73.9
MsG0380016361.01.T04 MTR_5g083200 31.858 113 77 0 1 113 82 194 1.85e-17 74.7
MsG0380016361.01.T04 MTR_0002s1220 31.858 113 77 0 1 113 82 194 1.85e-17 74.7
MsG0380016361.01.T04 MTR_8g059135 35.849 106 65 2 7 111 19 122 2.74e-17 72.8
MsG0380016361.01.T04 MTR_6g016355 41.026 78 46 0 2 79 101 178 6.78e-17 73.2
MsG0380016361.01.T04 MTR_8g038340 46.575 73 39 0 2 74 174 246 1.84e-16 73.2
MsG0380016361.01.T04 MTR_1g050488 40.000 80 48 0 4 83 85 164 2.29e-16 71.2
MsG0380016361.01.T04 MTR_3g111390 30.088 113 79 0 1 113 82 194 3.19e-16 71.6
MsG0380016361.01.T04 MTR_1g070820 30.088 113 79 0 1 113 82 194 3.19e-16 71.6
MsG0380016361.01.T04 MTR_7g078610 50.847 59 29 0 1 59 35 93 1.36e-15 67.4
MsG0380016361.01.T04 MTR_5g022720 55.357 56 25 0 64 119 1 56 1.41e-15 71.2
MsG0380016361.01.T04 MTR_1g054905 57.895 57 24 0 4 60 88 144 3.41e-15 68.2
MsG0380016361.01.T04 MTR_2g088140 67.442 43 14 0 78 120 49 91 6.76e-15 66.6
MsG0380016361.01.T04 MTR_7g006380 31.667 120 55 1 1 120 50 142 8.47e-15 67.8
MsG0380016361.01.T04 MTR_1g074240 44.776 67 37 0 20 86 3 69 1.35e-14 64.3
MsG0380016361.01.T04 MTR_6g034915 28.000 150 61 2 1 120 9 141 1.88e-14 66.6
MsG0380016361.01.T04 MTR_8g036780 37.500 88 55 0 2 89 19 106 3.74e-14 64.3
MsG0380016361.01.T04 MTR_1g099430 45.205 73 38 1 4 74 112 184 5.42e-14 65.9
MsG0380016361.01.T04 MTR_8g005560 50.000 56 28 0 64 119 1 56 9.85e-14 63.9
MsG0380016361.01.T04 MTR_4g094272 50.000 60 29 1 5 64 82 140 1.03e-13 63.9
MsG0380016361.01.T04 MTR_1g109000 39.726 73 44 0 4 76 13 85 3.16e-13 61.2
MsG0380016361.01.T04 MTR_8g088220 39.474 76 46 0 25 100 2 77 4.89e-13 60.5
MsG0380016361.01.T04 MTR_8g031080 35.294 119 51 2 2 120 274 366 5.30e-13 64.7
MsG0380016361.01.T04 MTR_4g128080 49.231 65 32 1 68 131 5 69 1.95e-12 58.5
MsG0380016361.01.T04 MTR_8g045330 42.466 73 41 1 1 73 81 152 3.02e-12 60.5
MsG0380016361.01.T04 MTR_2g055490 51.786 56 27 0 22 77 12 67 3.44e-12 59.3
MsG0380016361.01.T04 MTR_8g036690 39.726 73 28 1 48 120 2 58 6.28e-12 57.4
MsG0380016361.01.T04 MTR_1g062840 39.706 68 41 0 45 112 8 75 1.59e-11 57.0
MsG0380016361.01.T04 MTR_4g094370 44.643 56 31 0 4 59 22 77 4.10e-11 55.5
MsG0380016361.01.T04 MTR_8g069135 63.158 38 14 0 1 38 173 210 4.80e-11 58.9
MsG0380016361.01.T04 MTR_4g046027 49.153 59 30 0 1 59 111 169 6.42e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 30 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATCAATATTGCATTTAA+AGG 0.223258 3:+82461624 None:intergenic
ATGCCTCTCTTTCTTCTTTG+TGG 0.251540 3:-82461606 MsG0380016361.01.T01:CDS
CGTCTTAATGTTACAGAGAT+TGG 0.337593 3:-82461376 MsG0380016361.01.T01:CDS
TTGAGGATAGACTCACAGTT+TGG 0.340061 3:+82461527 None:intergenic
TGAGGATAGACTCACAGTTT+GGG 0.417523 3:+82461528 None:intergenic
ACTCTAGGGTGGAGTTTAAT+CGG 0.420759 3:-82461306 MsG0380016361.01.T01:CDS
CATCCTCATTCACAAACTCT+AGG 0.424822 3:-82461321 MsG0380016361.01.T01:CDS
TTGTGGAATCGTACAGGTAT+CGG 0.431426 3:-82461589 MsG0380016361.01.T01:CDS
GTGGAAGTTGGCGAAGCCCT+TGG 0.447402 3:-82461496 MsG0380016361.01.T01:intron
AGCTGTTAAAGTGGCTTCCC+TGG 0.455130 3:+82461253 None:intergenic
TCAAAATACTCGGTGGAAGT+TGG 0.469000 3:-82461508 MsG0380016361.01.T01:intron
GTGGCGCTCATATTCTTGCC+AGG 0.470142 3:-82461271 MsG0380016361.01.T01:CDS
TGTGGAATCGTACAGGTATC+GGG 0.483678 3:-82461588 MsG0380016361.01.T01:CDS
TCTTCTTTGTGGAATCGTAC+AGG 0.487631 3:-82461595 MsG0380016361.01.T01:CDS
CACCCTAGAGTTTGTGAATG+AGG 0.510828 3:+82461318 None:intergenic
ATCCTCATTCACAAACTCTA+GGG 0.539071 3:-82461320 MsG0380016361.01.T01:CDS
TATGGGACTAGCTGTTAAAG+TGG 0.542526 3:+82461244 None:intergenic
GTCACGTTATCTTAGCATGC+CGG 0.547204 3:-82461354 MsG0380016361.01.T01:CDS
ATCTGTTTATATGATGATGC+TGG 0.568483 3:-82461565 MsG0380016361.01.T01:intron
GCTACACACACTACAATGGT+TGG 0.592346 3:-82461470 MsG0380016361.01.T01:intron
CTCATTCACAAACTCTAGGG+TGG 0.606516 3:-82461317 MsG0380016361.01.T01:CDS
GAGTCTATCCTCAAAATACT+CGG 0.614813 3:-82461518 MsG0380016361.01.T01:intron
TGGCGCTCATATTCTTGCCA+GGG 0.618976 3:-82461270 MsG0380016361.01.T01:CDS
GTCTGCTACACACACTACAA+TGG 0.621948 3:-82461474 MsG0380016361.01.T01:intron
GTAGTGTGTGTAGCAGACCA+AGG 0.626515 3:+82461479 None:intergenic
TAATCGGAGACAAGCAAATG+TGG 0.627920 3:-82461290 MsG0380016361.01.T01:CDS
TAGTGTGTGTAGCAGACCAA+GGG 0.635307 3:+82461480 None:intergenic
ATTCCACAAAGAAGAAAGAG+AGG 0.644432 3:+82461603 None:intergenic
TCTATCCTCAAAATACTCGG+TGG 0.671428 3:-82461515 MsG0380016361.01.T01:intron
CACAGTTTGGGCGAGCACGT+AGG 0.687776 3:+82461540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
ATGAGGATGAAAAAAGATTC+CGG + Chr3:82461584-82461603 None:intergenic 30.0%
GGCATCAATATTGCATTTAA+AGG + Chr3:82461295-82461314 None:intergenic 30.0%
! ATCTGTTTATATGATGATGC+TGG - Chr3:82461351-82461370 MsG0380016361.01.T01:CDS 30.0%
ATCCTCATTCACAAACTCTA+GGG - Chr3:82461596-82461615 MsG0380016361.01.T01:CDS 35.0%
ATTCCACAAAGAAGAAAGAG+AGG + Chr3:82461316-82461335 None:intergenic 35.0%
CGTCTTAATGTTACAGAGAT+TGG - Chr3:82461540-82461559 MsG0380016361.01.T01:intron 35.0%
GAGTCTATCCTCAAAATACT+CGG - Chr3:82461398-82461417 MsG0380016361.01.T01:CDS 35.0%
! CGATTTTGTGTTGGAATCAA+AGG - Chr3:82461491-82461510 MsG0380016361.01.T01:intron 35.0%
ATGCCTCTCTTTCTTCTTTG+TGG - Chr3:82461310-82461329 MsG0380016361.01.T01:CDS 40.0%
CATCCTCATTCACAAACTCT+AGG - Chr3:82461595-82461614 MsG0380016361.01.T01:CDS 40.0%
TAATCGGAGACAAGCAAATG+TGG - Chr3:82461626-82461645 MsG0380016361.01.T01:CDS 40.0%
TCTATCCTCAAAATACTCGG+TGG - Chr3:82461401-82461420 MsG0380016361.01.T01:CDS 40.0%
TCTTCTTTGTGGAATCGTAC+AGG - Chr3:82461321-82461340 MsG0380016361.01.T01:CDS 40.0%
TGAGGATAGACTCACAGTTT+GGG + Chr3:82461391-82461410 None:intergenic 40.0%
TTGAGGATAGACTCACAGTT+TGG + Chr3:82461392-82461411 None:intergenic 40.0%
TTGTGGAATCGTACAGGTAT+CGG - Chr3:82461327-82461346 MsG0380016361.01.T01:CDS 40.0%
! AACTTCCACCGAGTATTTTG+AGG + Chr3:82461409-82461428 None:intergenic 40.0%
! TCAAAATACTCGGTGGAAGT+TGG - Chr3:82461408-82461427 MsG0380016361.01.T01:CDS 40.0%
!! ACTCTAGGGTGGAGTTTAAT+CGG - Chr3:82461610-82461629 MsG0380016361.01.T01:CDS 40.0%
!!! CGATCATGTCGATTTTGTGT+TGG - Chr3:82461482-82461501 MsG0380016361.01.T01:intron 40.0%
CACCCTAGAGTTTGTGAATG+AGG + Chr3:82461601-82461620 None:intergenic 45.0%
GCTACACACACTACAATGGT+TGG - Chr3:82461446-82461465 MsG0380016361.01.T01:CDS 45.0%
GTCACGTTATCTTAGCATGC+CGG - Chr3:82461562-82461581 MsG0380016361.01.T01:intron 45.0%
GTCTGCTACACACACTACAA+TGG - Chr3:82461442-82461461 MsG0380016361.01.T01:CDS 45.0%
TAGTGTGTGTAGCAGACCAA+GGG + Chr3:82461439-82461458 None:intergenic 45.0%
TGTGGAATCGTACAGGTATC+GGG - Chr3:82461328-82461347 MsG0380016361.01.T01:CDS 45.0%
! CTCATTCACAAACTCTAGGG+TGG - Chr3:82461599-82461618 MsG0380016361.01.T01:CDS 45.0%
GTAGTGTGTGTAGCAGACCA+AGG + Chr3:82461440-82461459 None:intergenic 50.0%
TGGCGCTCATATTCTTGCCA+GGG - Chr3:82461646-82461665 MsG0380016361.01.T03:CDS 50.0%
GTGGCGCTCATATTCTTGCC+AGG - Chr3:82461645-82461664 MsG0380016361.01.T03:CDS 55.0%
CACAGTTTGGGCGAGCACGT+AGG + Chr3:82461379-82461398 None:intergenic 60.0%
GTGGAAGTTGGCGAAGCCCT+TGG - Chr3:82461420-82461439 MsG0380016361.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82461258 82461680 82461258 ID=MsG0380016361.01;Name=MsG0380016361.01
Chr3 mRNA 82461258 82461656 82461258 ID=MsG0380016361.01.T01;Parent=MsG0380016361.01;Name=MsG0380016361.01.T01;_AED=0.48;_eAED=0.50;_QI=0|0|0|1|0|0|2|0|103
Chr3 exon 82461258 82461481 82461258 ID=MsG0380016361.01.T01:exon:13892;Parent=MsG0380016361.01.T01
Chr3 exon 82461569 82461656 82461569 ID=MsG0380016361.01.T01:exon:13891;Parent=MsG0380016361.01.T01
Chr3 CDS 82461569 82461656 82461569 ID=MsG0380016361.01.T01:cds;Parent=MsG0380016361.01.T01
Chr3 CDS 82461258 82461481 82461258 ID=MsG0380016361.01.T01:cds;Parent=MsG0380016361.01.T01
Chr3 mRNA 82461422 82461628 82461422 ID=MsG0380016361.01.T02;Parent=MsG0380016361.01;Name=MsG0380016361.01.T02;_AED=0.49;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|40
Chr3 exon 82461422 82461458 82461422 ID=MsG0380016361.01.T02:exon:13894;Parent=MsG0380016361.01.T02
Chr3 exon 82461543 82461628 82461543 ID=MsG0380016361.01.T02:exon:13893;Parent=MsG0380016361.01.T02
Chr3 CDS 82461543 82461628 82461543 ID=MsG0380016361.01.T02:cds;Parent=MsG0380016361.01.T02
Chr3 CDS 82461422 82461458 82461422 ID=MsG0380016361.01.T02:cds;Parent=MsG0380016361.01.T02
Chr3 mRNA 82461258 82461680 82461258 ID=MsG0380016361.01.T03;Parent=MsG0380016361.01;Name=MsG0380016361.01.T03;_AED=0.48;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|140
Chr3 exon 82461258 82461680 82461258 ID=MsG0380016361.01.T03:exon:13895;Parent=MsG0380016361.01.T03
Chr3 CDS 82461258 82461680 82461258 ID=MsG0380016361.01.T03:cds;Parent=MsG0380016361.01.T03
Chr3 mRNA 82461258 82461653 82461258 ID=MsG0380016361.01.T04;Parent=MsG0380016361.01;Name=MsG0380016361.01.T04;_AED=0.48;_eAED=0.49;_QI=0|-1|0|1|-1|0|1|0|131
Chr3 exon 82461258 82461653 82461258 ID=MsG0380016361.01.T04:exon:13896;Parent=MsG0380016361.01.T04
Chr3 CDS 82461258 82461653 82461258 ID=MsG0380016361.01.T04:cds;Parent=MsG0380016361.01.T04
Gene Sequence

>MsG0380016361.01.T01

AATACTGCGTCCTTTAAATGCAATATTGATGCCTCTCTTTCTTCTTTGTGGAATCGTACAGGTATCGGGATCTGTTTATATGATGATGTACAATGGTTGGCAGATATGCAGTTCGATCATGTCGATTTTGTGTTGGAATCAAAGGTAATAGCTGATGCTTTCAATTCTCATCGTCTTAATGTTACAGAGATTGGTCACGTTATCTTAGCATGCCGGAATCTTTTTTCATCCTCATTCACAAACTCTAGGGTGGAGTTTAATCGGAGACAAGCAAATGTGGCGCTCATATTCTTGCCAGGGAAGCCACTTTAA

>MsG0380016361.01.T02

ATGCCTCTCTTTCTTCTTTGTGGAATCGTACAGGTATCGGGATCTGTTTATATGATGATGCTGGCACCTACGTGCTCGCCCAAACTTTCGATCATGTCGATTTTGTGTTGGAATCAAAGGTAA

>MsG0380016361.01.T03

TTGAAGTGTAAAAGAATAAATTCTAATACTGCGTCCTTTAAATGCAATATTGATGCCTCTCTTTCTTCTTTGTGGAATCGTACAGGTATCGGGATCTGTTTATATGATGATGCTGGCACCTACGTGCTCGCCCAAACTGTGAGTCTATCCTCAAAATACTCGGTGGAAGTTGGCGAAGCCCTTGGTCTGCTACACACACTACAATGGTTGGCAGATATGCAGTTCGATCATGTCGATTTTGTGTTGGAATCAAAGGTAATAGCTGATGCTTTCAATTCTCATCGTCTTAATGTTACAGAGATTGGTCACGTTATCTTAGCATGCCGGAATCTTTTTTCATCCTCATTCACAAACTCTAGGGTGGAGTTTAATCGGAGACAAGCAAATGTGGCGCTCATATTCTTGCCAGGGAAGCCACTTTAA

>MsG0380016361.01.T04

ACTGCGTCCTTTAAATGCAATATTGATGCCTCTCTTTCTTCTTTGTGGAATCGTACAGGTATCGGGATCTGTTTATATGATGATGCTGGCACCTACGTGCTCGCCCAAACTGTGAGTCTATCCTCAAAATACTCGGTGGAAGTTGGCGAAGCCCTTGGTCTGCTACACACACTACAATGGTTGGCAGATATGCAGTTCGATCATGTCGATTTTGTGTTGGAATCAAAGGTAATAGCTGATGCTTTCAATTCTCATCGTCTTAATGTTACAGAGATTGGTCACGTTATCTTAGCATGCCGGAATCTTTTTTCATCCTCATTCACAAACTCTAGGGTGGAGTTTAATCGGAGACAAGCAAATGTGGCGCTCATATTCTTGCCAGGGAAGCCACTTTAA
Protein sequence

>MsG0380016361.01.T01

NTASFKCNIDASLSSLWNRTGIGICLYDDVQWLADMQFDHVDFVLESKVIADAFNSHRLNVTEIGHVILACRNLFSSSFTNSRVEFNRRQANVALIFLPGKPL*

>MsG0380016361.01.T02

MPLFLLCGIVQVSGSVYMMMLAPTCSPKLSIMSILCWNQR*

>MsG0380016361.01.T03

LKCKRINSNTASFKCNIDASLSSLWNRTGIGICLYDDAGTYVLAQTVSLSSKYSVEVGEALGLLHTLQWLADMQFDHVDFVLESKVIADAFNSHRLNVTEIGHVILACRNLFSSSFTNSRVEFNRRQANVALIFLPGKPL*

>MsG0380016361.01.T04

TASFKCNIDASLSSLWNRTGIGICLYDDAGTYVLAQTVSLSSKYSVEVGEALGLLHTLQWLADMQFDHVDFVLESKVIADAFNSHRLNVTEIGHVILACRNLFSSSFTNSRVEFNRRQANVALIFLPGKPL*