Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016401.01.T01 | XP_013461323.1 | 100 | 253 | 0 | 0 | 1 | 253 | 1 | 253 | 0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016401.01.T01 | Q6DBN1 | 68.376 | 234 | 67 | 2 | 23 | 249 | 1 | 234 | 6.84E-114 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016401.01.T01 | I3T836 | 100.000 | 253 | 0 | 0 | 1 | 253 | 1 | 253 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580025351.01 | MsG0380016401.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016401.01.T01 | MTR_3g088660 | 100.000 | 253 | 0 | 0 | 1 | 253 | 1 | 253 | 0.0 | 524 |
| MsG0380016401.01.T01 | MTR_3g072160 | 27.184 | 206 | 141 | 4 | 35 | 236 | 58 | 258 | 3.84e-15 | 73.6 |
| MsG0380016401.01.T01 | MTR_3g072160 | 27.723 | 202 | 137 | 4 | 39 | 236 | 25 | 221 | 6.49e-15 | 72.4 |
| MsG0380016401.01.T01 | MTR_3g088560 | 30.769 | 143 | 94 | 2 | 70 | 211 | 29 | 167 | 8.58e-14 | 68.6 |
| MsG0380016401.01.T01 | MTR_7g094900 | 26.490 | 151 | 107 | 1 | 77 | 227 | 542 | 688 | 1.26e-13 | 70.5 |
| MsG0380016401.01.T01 | MTR_7g094910 | 26.490 | 151 | 107 | 1 | 77 | 227 | 523 | 669 | 1.38e-13 | 70.5 |
| MsG0380016401.01.T01 | MTR_3g088560 | 30.769 | 143 | 94 | 2 | 70 | 211 | 81 | 219 | 1.60e-13 | 68.6 |
| MsG0380016401.01.T01 | MTR_3g088560 | 30.769 | 143 | 94 | 2 | 70 | 211 | 96 | 234 | 5.15e-13 | 67.4 |
| MsG0380016401.01.T01 | MTR_7g094490 | 27.568 | 185 | 113 | 5 | 74 | 243 | 201 | 379 | 6.59e-13 | 68.2 |
| MsG0380016401.01.T01 | MTR_3g088560 | 28.000 | 175 | 119 | 3 | 70 | 241 | 151 | 321 | 8.18e-13 | 67.4 |
| MsG0380016401.01.T01 | MTR_5g015680 | 29.605 | 152 | 100 | 3 | 95 | 241 | 79 | 228 | 9.70e-13 | 67.4 |
| MsG0380016401.01.T01 | MTR_5g015680 | 29.605 | 152 | 100 | 3 | 95 | 241 | 118 | 267 | 1.20e-12 | 67.4 |
| MsG0380016401.01.T01 | MTR_1g072650 | 27.568 | 185 | 113 | 5 | 74 | 243 | 205 | 383 | 1.49e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016401.01.T01 | AT4G08455 | 65.234 | 256 | 79 | 3 | 4 | 249 | 6 | 261 | 3.12e-118 | 339 |
| MsG0380016401.01.T01 | AT3G56230 | 29.592 | 196 | 127 | 5 | 49 | 241 | 86 | 273 | 1.29e-19 | 85.9 |
| MsG0380016401.01.T01 | AT1G01640 | 31.902 | 163 | 108 | 2 | 80 | 241 | 3 | 163 | 3.16e-19 | 82.8 |
| MsG0380016401.01.T01 | AT1G01640 | 31.902 | 163 | 108 | 2 | 80 | 241 | 24 | 184 | 5.28e-19 | 82.8 |
| MsG0380016401.01.T01 | AT4G37610 | 28.634 | 227 | 147 | 6 | 30 | 246 | 5 | 226 | 1.99e-14 | 72.4 |
| MsG0380016401.01.T01 | AT3G06190 | 27.174 | 184 | 115 | 4 | 74 | 243 | 196 | 374 | 8.82e-13 | 67.8 |
| MsG0380016401.01.T01 | AT1G21780 | 25.926 | 189 | 130 | 4 | 58 | 242 | 139 | 321 | 2.52e-11 | 63.2 |
| MsG0380016401.01.T01 | AT1G21780 | 25.926 | 189 | 130 | 4 | 58 | 242 | 139 | 321 | 2.52e-11 | 63.2 |
| MsG0380016401.01.T01 | AT2G40450 | 29.775 | 178 | 117 | 3 | 83 | 252 | 26 | 203 | 4.30e-11 | 61.2 |
| MsG0380016401.01.T01 | AT3G06190 | 27.879 | 165 | 102 | 3 | 74 | 226 | 196 | 355 | 5.61e-11 | 62.4 |
| MsG0380016401.01.T01 | AT2G39760 | 27.922 | 154 | 97 | 2 | 97 | 236 | 207 | 360 | 6.55e-11 | 62.4 |
| MsG0380016401.01.T01 | AT2G05330 | 29.487 | 156 | 104 | 2 | 101 | 250 | 34 | 189 | 9.08e-11 | 60.5 |
| MsG0380016401.01.T01 | AT3G43700 | 24.457 | 184 | 116 | 4 | 74 | 239 | 199 | 377 | 9.35e-11 | 61.6 |
Find 84 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCACAGCACTTTGATTC+TGG | 0.253784 | 3:-82963111 | MsG0380016401.01.T01:three_prime_UTR |
| TCCTAAAACTAATAGGTTAC+AGG | 0.263882 | 3:+82963615 | None:intergenic |
| GGGTTATAGGAATGCGGTTT+AGG | 0.297273 | 3:-82963322 | MsG0380016401.01.T01:exon |
| TTGCAAGTACCGGCGTCGTC+GGG | 0.297670 | 3:+82964387 | None:intergenic |
| ATTTGATCTCCAAACTGAAT+TGG | 0.305803 | 3:-82963549 | MsG0380016401.01.T01:CDS |
| TGCAGCCACGCTAGGGTTAT+AGG | 0.318170 | 3:-82963335 | MsG0380016401.01.T01:exon |
| TCAAGCATGGCTCTGAAAAC+TGG | 0.323355 | 3:+82963757 | None:intergenic |
| GGCAGTGATCATGGAGAATA+TGG | 0.334507 | 3:-82963458 | MsG0380016401.01.T01:CDS |
| GCATGGTAGAAACTTAAGTT+TGG | 0.349216 | 3:-82963277 | MsG0380016401.01.T01:three_prime_UTR |
| CTAATAGGTTACAGGCCATT+TGG | 0.355315 | 3:+82963623 | None:intergenic |
| AGCTTTCTCCCAATTCAGTT+TGG | 0.363821 | 3:+82963540 | None:intergenic |
| CTAGAGCAGTTGCCTCTCTA+AGG | 0.364167 | 3:-82963167 | MsG0380016401.01.T01:three_prime_UTR |
| TGAAGCTTATCTTGCCAAAC+AGG | 0.369315 | 3:-82963365 | MsG0380016401.01.T01:CDS |
| CCAATTGCAAGATGCAGCTT+TGG | 0.375309 | 3:-82963479 | MsG0380016401.01.T01:CDS |
| CTGACGTTTGAATTCCTCTT+CGG | 0.381082 | 3:+82964338 | None:intergenic |
| GTAGTAGTAACAGCAGTATA+TGG | 0.382806 | 3:+82963204 | None:intergenic |
| AGACTTTGGATTTGAGGTCT+TGG | 0.386775 | 3:+82964313 | None:intergenic |
| ATGCGATTGATGATGGATAT+TGG | 0.391850 | 3:+82964530 | None:intergenic |
| GGAAGGAGACTTTGGATTTG+AGG | 0.393809 | 3:+82964307 | None:intergenic |
| GGCTGCAGTATTAACCTGTT+TGG | 0.400932 | 3:+82963351 | None:intergenic |
| TTTGATCTCCAAACTGAATT+GGG | 0.405372 | 3:-82963548 | MsG0380016401.01.T01:CDS |
| CCAAAGCTGCATCTTGCAAT+TGG | 0.405862 | 3:+82963479 | None:intergenic |
| TACAGGCCATTTGGTTATCA+AGG | 0.418138 | 3:+82963632 | None:intergenic |
| CGAAACATCAGCAATCTTGA+TGG | 0.418642 | 3:+82963705 | None:intergenic |
| GAGAGTGAGGAAGGAGACTT+TGG | 0.418723 | 3:+82964299 | None:intergenic |
| AACGGCCTTGTGAGCGGGAA+TGG | 0.421444 | 3:+82964206 | None:intergenic |
| TGCAGCTTTGGCAGTGATCA+TGG | 0.425358 | 3:-82963467 | MsG0380016401.01.T01:CDS |
| AGCCATGCTTGAGAATGATA+TGG | 0.435569 | 3:-82963746 | MsG0380016401.01.T01:CDS |
| TGATGGATATTGGATGGAAA+AGG | 0.462631 | 3:+82964540 | None:intergenic |
| TCGATCGATGCGATTGATGA+TGG | 0.466179 | 3:+82964523 | None:intergenic |
| GTTAATACTGCAGCCACGCT+AGG | 0.472280 | 3:-82963343 | MsG0380016401.01.T01:CDS |
| GAATTCCTCTTCGGTTTCGT+TGG | 0.472827 | 3:+82964347 | None:intergenic |
| AACTATCACCGGACGGAAGA+AGG | 0.480804 | 3:+82964238 | None:intergenic |
| TTTGCAAGTACCGGCGTCGT+CGG | 0.487205 | 3:+82964386 | None:intergenic |
| AGCTGCATCTTGCAATTGGT+TGG | 0.493566 | 3:+82963483 | None:intergenic |
| AACTAATCCTCGTTTAGTTG+TGG | 0.493649 | 3:-82963395 | MsG0380016401.01.T01:CDS |
| GTATCAGGTGAAGCATCTTA+AGG | 0.500142 | 3:-82963587 | MsG0380016401.01.T01:CDS |
| TCCTTCCATTCCCGCTCACA+AGG | 0.504228 | 3:-82964211 | MsG0380016401.01.T01:CDS |
| CTCCATATCATTCTCAAGCA+TGG | 0.507732 | 3:+82963744 | None:intergenic |
| AGGAGAAGCGAGAGTGAGGA+AGG | 0.513816 | 3:+82964290 | None:intergenic |
| ACGAGAACGGCCTTGTGAGC+GGG | 0.514027 | 3:+82964201 | None:intergenic |
| GTCGTCGTCGTAATCGCTCT+CGG | 0.517038 | 3:+82964458 | None:intergenic |
| GATGGATATTGGATGGAAAA+GGG | 0.519978 | 3:+82964541 | None:intergenic |
| AGTTTGGATTATATTCTTAG+TGG | 0.521806 | 3:-82963261 | MsG0380016401.01.T01:three_prime_UTR |
| TGAAGATTACACGGAGTTGG+TGG | 0.522112 | 3:-82963419 | MsG0380016401.01.T01:CDS |
| GTAGCATTCTTTGCAAGTAC+CGG | 0.522996 | 3:+82964377 | None:intergenic |
| GCCTTGTGAGCGGGAATGGA+AGG | 0.523187 | 3:+82964210 | None:intergenic |
| AAATGAAGATTACACGGAGT+TGG | 0.527013 | 3:-82963422 | MsG0380016401.01.T01:CDS |
| AAGAAGGACAAGATCGGTGG+TGG | 0.529952 | 3:+82964254 | None:intergenic |
| GTTTGGATTATATTCTTAGT+GGG | 0.531016 | 3:-82963260 | MsG0380016401.01.T01:three_prime_UTR |
| AGCATGCCTTGATAACCAAA+TGG | 0.551457 | 3:-82963638 | MsG0380016401.01.T01:CDS |
| GATCTTGTCCTTCTTCCGTC+CGG | 0.559785 | 3:-82964246 | MsG0380016401.01.T01:CDS |
| CGAAGCCAACGAAACCGAAG+AGG | 0.562358 | 3:-82964352 | MsG0380016401.01.T01:CDS |
| TACACTGTGCAACGGTGCCG+TGG | 0.563730 | 3:+82964483 | None:intergenic |
| TTAATACTGCAGCCACGCTA+GGG | 0.570249 | 3:-82963342 | MsG0380016401.01.T01:CDS |
| AGAATGATATGGAGGAAAGC+CGG | 0.570838 | 3:-82963735 | MsG0380016401.01.T01:CDS |
| ATTGTAGTCAACTTTAAGCA+TGG | 0.573029 | 3:-82963294 | MsG0380016401.01.T01:three_prime_UTR |
| CAAGAGGAGAAGCGAGAGTG+AGG | 0.574599 | 3:+82964286 | None:intergenic |
| TGCAAGTACCGGCGTCGTCG+GGG | 0.582135 | 3:+82964388 | None:intergenic |
| GGCATTGTGTTGATGTGCAA+AGG | 0.583175 | 3:+82963504 | None:intergenic |
| CAATCTTGATGGTGCCACTC+CGG | 0.589211 | 3:+82963716 | None:intergenic |
| CTCACAAGAGAGACATCTCA+TGG | 0.593878 | 3:+82964422 | None:intergenic |
| AGGACAAGATCGGTGGTGGA+AGG | 0.595036 | 3:+82964258 | None:intergenic |
| GTTGCCTCTCTAAGGCATTG+TGG | 0.598364 | 3:-82963159 | MsG0380016401.01.T01:three_prime_UTR |
| GACGAGAACGGCCTTGTGAG+CGG | 0.616158 | 3:+82964200 | None:intergenic |
| CTTAGTGGGTGATTACTCTG+TGG | 0.617518 | 3:-82963246 | MsG0380016401.01.T01:three_prime_UTR |
| GATTACGACCCCGACGACGC+CGG | 0.624267 | 3:-82964396 | MsG0380016401.01.T01:CDS |
| CATGAGATGTCTCTCTTGTG+AGG | 0.631122 | 3:-82964421 | MsG0380016401.01.T01:CDS |
| AGAGAGGGTACTGACGAGAA+CGG | 0.641189 | 3:+82964188 | None:intergenic |
| GATTGATGATGGATATTGGA+TGG | 0.645432 | 3:+82964534 | None:intergenic |
| CATGCTTGAGAATGATATGG+AGG | 0.646700 | 3:-82963743 | MsG0380016401.01.T01:CDS |
| GGACGGAAGAAGGACAAGAT+CGG | 0.653862 | 3:+82964248 | None:intergenic |
| TAATCCACAATGCCTTAGAG+AGG | 0.657957 | 3:+82963155 | None:intergenic |
| GGAAGGAGAGAAACTATCAC+CGG | 0.659659 | 3:+82964227 | None:intergenic |
| ACGCTAGGGTTATAGGAATG+CGG | 0.661484 | 3:-82963328 | MsG0380016401.01.T01:exon |
| GTGGTGGAAGGAGCATCAAG+AGG | 0.662081 | 3:+82964270 | None:intergenic |
| GGAGAGAAACTATCACCGGA+CGG | 0.673542 | 3:+82964231 | None:intergenic |
| TATATTTCCACAACTAAACG+AGG | 0.674137 | 3:+82963388 | None:intergenic |
| TCTCGGAGTACACTGTGCAA+CGG | 0.678301 | 3:+82964475 | None:intergenic |
| GATATGGAGGAAAGCCGGAG+TGG | 0.686483 | 3:-82963730 | MsG0380016401.01.T01:CDS |
| CGGAAGAAGGACAAGATCGG+TGG | 0.689295 | 3:+82964251 | None:intergenic |
| ATCGATCAGATAGAATGCCA+CGG | 0.689432 | 3:-82964500 | MsG0380016401.01.T01:exon |
| ATTAGAACACAGAAATCACA+AGG | 0.707643 | 3:+82963132 | None:intergenic |
| GCATTCCTATAACCCTAGCG+TGG | 0.731788 | 3:+82963330 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATAAAAATAAAA+AGG | + | Chr3:82963469-82963488 | None:intergenic | 0.0% |
| !!! | ATAAAAAAAAGTATGAACAT+TGG | - | Chr3:82964543-82964562 | MsG0380016401.01.T01:five_prime_UTR | 15.0% |
| !!! | ATTTAATTTAAAGTGTACTA+TGG | - | Chr3:82963763-82963782 | MsG0380016401.01.T01:CDS | 15.0% |
| !! | ACTTTAAATTAAATCATCAG+TGG | + | Chr3:82963757-82963776 | None:intergenic | 20.0% |
| !! | GTTAAATAATAATAACCATG+TGG | - | Chr3:82963527-82963546 | MsG0380016401.01.T01:CDS | 20.0% |
| ! | AAGCAATACATAATAGAAGA+AGG | + | Chr3:82963671-82963690 | None:intergenic | 25.0% |
| ! | AGCAATACATAATAGAAGAA+GGG | + | Chr3:82963670-82963689 | None:intergenic | 25.0% |
| ! | AGTTTGGATTATATTCTTAG+TGG | - | Chr3:82964365-82964384 | MsG0380016401.01.T01:CDS | 25.0% |
| ! | ATAATAATAACCATGTGGTT+AGG | - | Chr3:82963532-82963551 | MsG0380016401.01.T01:CDS | 25.0% |
| ! | CACTAAAAATGAAGATTACA+CGG | - | Chr3:82964198-82964217 | MsG0380016401.01.T01:intron | 25.0% |
| ! | GTTTGGATTATATTCTTAGT+GGG | - | Chr3:82964366-82964385 | MsG0380016401.01.T01:CDS | 25.0% |
| !! | AAAGTATACACCTGTTTTAT+AGG | - | Chr3:82964571-82964590 | MsG0380016401.01.T01:five_prime_UTR | 25.0% |
| !! | AAGTATACACCTGTTTTATA+GGG | - | Chr3:82964572-82964591 | MsG0380016401.01.T01:five_prime_UTR | 25.0% |
| !! | ACTTTTCTCCTAAAACTAAT+AGG | + | Chr3:82964021-82964040 | None:intergenic | 25.0% |
| !!! | AGCTTTAAAATCATTGAGTA+AGG | + | Chr3:82963792-82963811 | None:intergenic | 25.0% |
| !!! | GCTTTAAAATCATTGAGTAA+GGG | + | Chr3:82963791-82963810 | None:intergenic | 25.0% |
| !!! | TGTAATCTTCATTTTTAGTG+AGG | + | Chr3:82964198-82964217 | None:intergenic | 25.0% |
| AAATAAAAAGGTGAAGAGAG+AGG | + | Chr3:82963457-82963476 | None:intergenic | 30.0% | |
| AATAAAAAGGTGAAGAGAGA+GGG | + | Chr3:82963456-82963475 | None:intergenic | 30.0% | |
| AGAGTTAAGGACTAATTGTT+CGG | - | Chr3:82963581-82963600 | MsG0380016401.01.T01:CDS | 30.0% | |
| ATTAGAACACAGAAATCACA+AGG | + | Chr3:82964497-82964516 | None:intergenic | 30.0% | |
| ATTGTAGTCAACTTTAAGCA+TGG | - | Chr3:82964332-82964351 | MsG0380016401.01.T01:CDS | 30.0% | |
| ATTTGATCTCCAAACTGAAT+TGG | - | Chr3:82964077-82964096 | MsG0380016401.01.T01:intron | 30.0% | |
| TATATTTCCACAACTAAACG+AGG | + | Chr3:82964241-82964260 | None:intergenic | 30.0% | |
| TATCTTGTCCACAATCAAAA+CGG | - | Chr3:82963690-82963709 | MsG0380016401.01.T01:CDS | 30.0% | |
| TCCTAAAACTAATAGGTTAC+AGG | + | Chr3:82964014-82964033 | None:intergenic | 30.0% | |
| TTGAAGTGGTTAACGAATTT+CGG | - | Chr3:82963555-82963574 | MsG0380016401.01.T01:CDS | 30.0% | |
| TTTGATCTCCAAACTGAATT+GGG | - | Chr3:82964078-82964097 | MsG0380016401.01.T01:intron | 30.0% | |
| ! | ACATATTCAAGTTCCTATCA+TGG | + | Chr3:82963614-82963633 | None:intergenic | 30.0% |
| ! | AGTATACACCTGTTTTATAG+GGG | - | Chr3:82964573-82964592 | MsG0380016401.01.T01:five_prime_UTR | 30.0% |
| ! | CATATTCAAGTTCCTATCAT+GGG | + | Chr3:82963613-82963632 | None:intergenic | 30.0% |
| !!! | AGTTTTAGGAGAAAAGTATC+AGG | - | Chr3:82964024-82964043 | MsG0380016401.01.T01:intron | 30.0% |
| AAATGAAGATTACACGGAGT+TGG | - | Chr3:82964204-82964223 | MsG0380016401.01.T01:CDS | 35.0% | |
| AACTAATCCTCGTTTAGTTG+TGG | - | Chr3:82964231-82964250 | MsG0380016401.01.T01:CDS | 35.0% | |
| ATATCACAGCACTTTGATTC+TGG | - | Chr3:82964515-82964534 | MsG0380016401.01.T01:five_prime_UTR | 35.0% | |
| ATCTTGTCCACAATCAAAAC+GGG | - | Chr3:82963691-82963710 | MsG0380016401.01.T01:CDS | 35.0% | |
| CGAATTTCGGTTAAGAGTTA+AGG | - | Chr3:82963568-82963587 | MsG0380016401.01.T01:CDS | 35.0% | |
| GATGGATATTGGATGGAAAA+GGG | + | Chr3:82963088-82963107 | None:intergenic | 35.0% | |
| GCATGGTAGAAACTTAAGTT+TGG | - | Chr3:82964349-82964368 | MsG0380016401.01.T01:CDS | 35.0% | |
| GTAGTAGTAACAGCAGTATA+TGG | + | Chr3:82964425-82964444 | None:intergenic | 35.0% | |
| ! | CAATCAAAACGGGAGTATAA+TGG | - | Chr3:82963701-82963720 | MsG0380016401.01.T01:CDS | 35.0% |
| ! | GGGAGTATAATGGTGTATTA+TGG | - | Chr3:82963711-82963730 | MsG0380016401.01.T01:CDS | 35.0% |
| ! | TGATGGATATTGGATGGAAA+AGG | + | Chr3:82963089-82963108 | None:intergenic | 35.0% |
| ! | TGGAAAAGGGTTTTCTCTTT+CGG | + | Chr3:82963075-82963094 | None:intergenic | 35.0% |
| !! | ATGCGATTGATGATGGATAT+TGG | + | Chr3:82963099-82963118 | None:intergenic | 35.0% |
| !! | GATTGATGATGGATATTGGA+TGG | + | Chr3:82963095-82963114 | None:intergenic | 35.0% |
| !!! | GCCTGTAACCTATTAGTTTT+AGG | - | Chr3:82964010-82964029 | MsG0380016401.01.T01:intron | 35.0% |
| !!! | TTATACTCCCGTTTTGATTG+TGG | + | Chr3:82963701-82963720 | None:intergenic | 35.0% |
| ACATGACGCGATGTTTGAAT+AGG | - | Chr3:82963835-82963854 | MsG0380016401.01.T01:intron | 40.0% | |
| AGAATGATATGGAGGAAAGC+CGG | - | Chr3:82963891-82963910 | MsG0380016401.01.T01:intron | 40.0% | |
| AGCCATGCTTGAGAATGATA+TGG | - | Chr3:82963880-82963899 | MsG0380016401.01.T01:intron | 40.0% | |
| AGCTTTCTCCCAATTCAGTT+TGG | + | Chr3:82964089-82964108 | None:intergenic | 40.0% | |
| ATCGATCAGATAGAATGCCA+CGG | - | Chr3:82963126-82963145 | MsG0380016401.01.T01:three_prime_UTR | 40.0% | |
| CATGCTTGAGAATGATATGG+AGG | - | Chr3:82963883-82963902 | MsG0380016401.01.T01:intron | 40.0% | |
| CGAAACATCAGCAATCTTGA+TGG | + | Chr3:82963924-82963943 | None:intergenic | 40.0% | |
| CTAATAGGTTACAGGCCATT+TGG | + | Chr3:82964006-82964025 | None:intergenic | 40.0% | |
| CTCCATATCATTCTCAAGCA+TGG | + | Chr3:82963885-82963904 | None:intergenic | 40.0% | |
| CTGACGTTTGAATTCCTCTT+CGG | + | Chr3:82963291-82963310 | None:intergenic | 40.0% | |
| GTAGCATTCTTTGCAAGTAC+CGG | + | Chr3:82963252-82963271 | None:intergenic | 40.0% | |
| TAATCCACAATGCCTTAGAG+AGG | + | Chr3:82964474-82964493 | None:intergenic | 40.0% | |
| TACAGGCCATTTGGTTATCA+AGG | + | Chr3:82963997-82964016 | None:intergenic | 40.0% | |
| TGAAGCTTATCTTGCCAAAC+AGG | - | Chr3:82964261-82964280 | MsG0380016401.01.T01:CDS | 40.0% | |
| ! | AGACTTTGGATTTGAGGTCT+TGG | + | Chr3:82963316-82963335 | None:intergenic | 40.0% |
| ! | AGCATGCCTTGATAACCAAA+TGG | - | Chr3:82963988-82964007 | MsG0380016401.01.T01:intron | 40.0% |
| ! | GTATCAGGTGAAGCATCTTA+AGG | - | Chr3:82964039-82964058 | MsG0380016401.01.T01:intron | 40.0% |
| ACCACTTCAACCTAACCACA+TGG | + | Chr3:82963545-82963564 | None:intergenic | 45.0% | |
| ACGCTAGGGTTATAGGAATG+CGG | - | Chr3:82964298-82964317 | MsG0380016401.01.T01:CDS | 45.0% | |
| AGCTGCATCTTGCAATTGGT+TGG | + | Chr3:82964146-82964165 | None:intergenic | 45.0% | |
| CATGAGATGTCTCTCTTGTG+AGG | - | Chr3:82963205-82963224 | MsG0380016401.01.T01:three_prime_UTR | 45.0% | |
| CCAAAGCTGCATCTTGCAAT+TGG | + | Chr3:82964150-82964169 | None:intergenic | 45.0% | |
| CCAATTGCAAGATGCAGCTT+TGG | - | Chr3:82964147-82964166 | MsG0380016401.01.T01:intron | 45.0% | |
| CTCACAAGAGAGACATCTCA+TGG | + | Chr3:82963207-82963226 | None:intergenic | 45.0% | |
| GAATTCCTCTTCGGTTTCGT+TGG | + | Chr3:82963282-82963301 | None:intergenic | 45.0% | |
| GGAAGGAGACTTTGGATTTG+AGG | + | Chr3:82963322-82963341 | None:intergenic | 45.0% | |
| GGAAGGAGAGAAACTATCAC+CGG | + | Chr3:82963402-82963421 | None:intergenic | 45.0% | |
| GGCAGTGATCATGGAGAATA+TGG | - | Chr3:82964168-82964187 | MsG0380016401.01.T01:intron | 45.0% | |
| GGCTGCAGTATTAACCTGTT+TGG | + | Chr3:82964278-82964297 | None:intergenic | 45.0% | |
| GGGTTATAGGAATGCGGTTT+AGG | - | Chr3:82964304-82964323 | MsG0380016401.01.T01:CDS | 45.0% | |
| GTTCGGAAGAATCCCATGAT+AGG | - | Chr3:82963598-82963617 | MsG0380016401.01.T01:CDS | 45.0% | |
| TCGATCGATGCGATTGATGA+TGG | + | Chr3:82963106-82963125 | None:intergenic | 45.0% | |
| TGAAGATTACACGGAGTTGG+TGG | - | Chr3:82964207-82964226 | MsG0380016401.01.T01:CDS | 45.0% | |
| TTAATACTGCAGCCACGCTA+GGG | - | Chr3:82964284-82964303 | MsG0380016401.01.T01:CDS | 45.0% | |
| ! | CTTAGTGGGTGATTACTCTG+TGG | - | Chr3:82964380-82964399 | MsG0380016401.01.T01:CDS | 45.0% |
| ! | GGCATTGTGTTGATGTGCAA+AGG | + | Chr3:82964125-82964144 | None:intergenic | 45.0% |
| ! | TTTTCTCTTTCGGCGTCACA+CGG | + | Chr3:82963065-82963084 | None:intergenic | 45.0% |
| !! | ACCATGTGGTTAGGTTGAAG+TGG | - | Chr3:82963541-82963560 | MsG0380016401.01.T01:CDS | 45.0% |
| !! | TCAAGCATGGCTCTGAAAAC+TGG | + | Chr3:82963872-82963891 | None:intergenic | 45.0% |
| AACTATCACCGGACGGAAGA+AGG | + | Chr3:82963391-82963410 | None:intergenic | 50.0% | |
| AAGAAGGACAAGATCGGTGG+TGG | + | Chr3:82963375-82963394 | None:intergenic | 50.0% | |
| CTAGAGCAGTTGCCTCTCTA+AGG | - | Chr3:82964459-82964478 | MsG0380016401.01.T01:CDS | 50.0% | |
| GAGAGTGAGGAAGGAGACTT+TGG | + | Chr3:82963330-82963349 | None:intergenic | 50.0% | |
| GATCTTGTCCTTCTTCCGTC+CGG | - | Chr3:82963380-82963399 | MsG0380016401.01.T01:CDS | 50.0% | |
| GCATTCCTATAACCCTAGCG+TGG | + | Chr3:82964299-82964318 | None:intergenic | 50.0% | |
| GGACGGAAGAAGGACAAGAT+CGG | + | Chr3:82963381-82963400 | None:intergenic | 50.0% | |
| GGAGAGAAACTATCACCGGA+CGG | + | Chr3:82963398-82963417 | None:intergenic | 50.0% | |
| GTTAATACTGCAGCCACGCT+AGG | - | Chr3:82964283-82964302 | MsG0380016401.01.T01:CDS | 50.0% | |
| TCTCGGAGTACACTGTGCAA+CGG | + | Chr3:82963154-82963173 | None:intergenic | 50.0% | |
| ! | TGCAGCTTTGGCAGTGATCA+TGG | - | Chr3:82964159-82964178 | MsG0380016401.01.T01:intron | 50.0% |
| !! | AGAGAGGGTACTGACGAGAA+CGG | + | Chr3:82963441-82963460 | None:intergenic | 50.0% |
| !! | CAATCTTGATGGTGCCACTC+CGG | + | Chr3:82963913-82963932 | None:intergenic | 50.0% |
| !! | GTTGCCTCTCTAAGGCATTG+TGG | - | Chr3:82964467-82964486 | MsG0380016401.01.T01:CDS | 50.0% |
| AGGAGAAGCGAGAGTGAGGA+AGG | + | Chr3:82963339-82963358 | None:intergenic | 55.0% | |
| CAAGAGGAGAAGCGAGAGTG+AGG | + | Chr3:82963343-82963362 | None:intergenic | 55.0% | |
| CGAAGCCAACGAAACCGAAG+AGG | - | Chr3:82963274-82963293 | MsG0380016401.01.T01:three_prime_UTR | 55.0% | |
| CGGAAGAAGGACAAGATCGG+TGG | + | Chr3:82963378-82963397 | None:intergenic | 55.0% | |
| GATATGGAGGAAAGCCGGAG+TGG | - | Chr3:82963896-82963915 | MsG0380016401.01.T01:intron | 55.0% | |
| GTCGTCGTCGTAATCGCTCT+CGG | + | Chr3:82963171-82963190 | None:intergenic | 55.0% | |
| TCCTTCCATTCCCGCTCACA+AGG | - | Chr3:82963415-82963434 | MsG0380016401.01.T01:CDS | 55.0% | |
| TGCAGCCACGCTAGGGTTAT+AGG | - | Chr3:82964291-82964310 | MsG0380016401.01.T01:CDS | 55.0% | |
| !! | AGGACAAGATCGGTGGTGGA+AGG | + | Chr3:82963371-82963390 | None:intergenic | 55.0% |
| !! | GTGGTGGAAGGAGCATCAAG+AGG | + | Chr3:82963359-82963378 | None:intergenic | 55.0% |
| !! | TTTGCAAGTACCGGCGTCGT+CGG | + | Chr3:82963243-82963262 | None:intergenic | 55.0% |
| GCCTTGTGAGCGGGAATGGA+AGG | + | Chr3:82963419-82963438 | None:intergenic | 60.0% | |
| ! | AACGGCCTTGTGAGCGGGAA+TGG | + | Chr3:82963423-82963442 | None:intergenic | 60.0% |
| ! | ACGAGAACGGCCTTGTGAGC+GGG | + | Chr3:82963428-82963447 | None:intergenic | 60.0% |
| ! | GACGAGAACGGCCTTGTGAG+CGG | + | Chr3:82963429-82963448 | None:intergenic | 60.0% |
| ! | TACACTGTGCAACGGTGCCG+TGG | + | Chr3:82963146-82963165 | None:intergenic | 60.0% |
| !! | TTGCAAGTACCGGCGTCGTC+GGG | + | Chr3:82963242-82963261 | None:intergenic | 60.0% |
| GATTACGACCCCGACGACGC+CGG | - | Chr3:82963230-82963249 | MsG0380016401.01.T01:three_prime_UTR | 65.0% | |
| !! | TGCAAGTACCGGCGTCGTCG+GGG | + | Chr3:82963241-82963260 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 82963054 | 82964594 | 82963054 | ID=MsG0380016401.01;Name=MsG0380016401.01 |
| Chr3 | mRNA | 82963054 | 82964594 | 82963054 | ID=MsG0380016401.01.T01;Parent=MsG0380016401.01;Name=MsG0380016401.01.T01;_AED=0.31;_eAED=0.31;_QI=86|1|1|1|1|1|2|282|253 |
| Chr3 | exon | 82963054 | 82963791 | 82963054 | ID=MsG0380016401.01.T01:exon:11000;Parent=MsG0380016401.01.T01 |
| Chr3 | exon | 82964203 | 82964594 | 82964203 | ID=MsG0380016401.01.T01:exon:10999;Parent=MsG0380016401.01.T01 |
| Chr3 | five_prime_UTR | 82964509 | 82964594 | 82964509 | ID=MsG0380016401.01.T01:five_prime_utr;Parent=MsG0380016401.01.T01 |
| Chr3 | CDS | 82964203 | 82964508 | 82964203 | ID=MsG0380016401.01.T01:cds;Parent=MsG0380016401.01.T01 |
| Chr3 | CDS | 82963336 | 82963791 | 82963336 | ID=MsG0380016401.01.T01:cds;Parent=MsG0380016401.01.T01 |
| Chr3 | three_prime_UTR | 82963054 | 82963335 | 82963054 | ID=MsG0380016401.01.T01:three_prime_utr;Parent=MsG0380016401.01.T01 |
| Gene Sequence |
| Protein sequence |
