AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016489.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016489.01.T01 MTR_3g090820 97.236 398 7 1 1 398 1 394 0.0 793
MsG0380016489.01.T01 MTR_3g090820 96.176 340 9 1 1 340 1 336 0.0 667
MsG0380016489.01.T01 MTR_7g117030 64.674 368 101 6 31 398 4 342 3.26e-165 467
MsG0380016489.01.T01 MTR_7g064980 26.667 270 166 7 134 396 75 319 7.71e-18 84.0
MsG0380016489.01.T01 MTR_4g018750 25.429 350 187 11 46 390 17 297 4.66e-16 78.6
MsG0380016489.01.T01 MTR_7g066690 25.073 343 191 10 32 374 6 282 1.59e-15 77.0
MsG0380016489.01.T01 MTR_5g081150 26.042 288 179 8 110 391 62 321 6.28e-14 72.8
MsG0380016489.01.T01 MTR_3g107510 24.335 263 170 6 128 388 155 390 1.38e-12 68.9
MsG0380016489.01.T01 MTR_2g436930 23.416 363 198 12 46 386 15 319 1.76e-12 68.2
MsG0380016489.01.T01 MTR_1g012030 24.060 266 169 6 130 391 174 410 1.83e-12 68.9
MsG0380016489.01.T01 MTR_8g098240 26.389 288 175 9 106 388 329 584 3.21e-12 68.6
MsG0380016489.01.T01 MTR_3g104600 25.271 277 180 9 123 388 66 326 4.86e-12 67.0
MsG0380016489.01.T01 MTR_4g114320 23.420 269 170 8 125 388 154 391 7.83e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016489.01.T01 AT4G27940 64.748 417 119 6 4 398 3 413 0.0 535
MsG0380016489.01.T01 AT2G46320 62.366 372 117 8 29 395 8 361 2.59e-145 417
MsG0380016489.01.T01 AT2G46320 68.199 261 68 5 138 395 14 262 3.13e-112 329
MsG0380016489.01.T01 AT2G46320 68.199 261 68 5 138 395 14 262 3.13e-112 329
MsG0380016489.01.T01 AT2G46320 68.199 261 68 5 138 395 14 262 3.13e-112 329
MsG0380016489.01.T01 AT2G46320 68.037 219 57 4 138 355 14 220 7.27e-90 271
MsG0380016489.01.T01 AT4G26180 29.433 282 168 10 121 392 50 310 3.57e-17 82.4
MsG0380016489.01.T01 AT3G55640 27.372 274 170 8 122 389 73 323 1.81e-15 77.4
MsG0380016489.01.T01 AT3G55640 27.372 274 170 8 122 389 73 323 1.81e-15 77.4
MsG0380016489.01.T01 AT2G37890 26.038 265 161 8 133 388 91 329 3.10e-14 73.6
MsG0380016489.01.T01 AT4G26180 29.688 256 149 10 121 366 50 284 4.38e-14 72.8
MsG0380016489.01.T01 AT3G53940 26.022 269 154 8 134 388 120 357 5.38e-14 73.2
MsG0380016489.01.T01 AT5G58970 24.906 265 174 8 124 388 56 295 5.53e-13 69.7
MsG0380016489.01.T01 AT3G54110 23.780 328 185 10 47 374 18 280 1.94e-12 68.2
MsG0380016489.01.T01 AT5G46800 26.165 279 185 8 118 392 39 300 8.25e-12 65.9
MsG0380016489.01.T01 AT5G46800 26.165 279 185 8 118 392 39 300 8.25e-12 65.9
MsG0380016489.01.T01 AT5G46800 26.165 279 185 8 118 392 39 300 8.25e-12 65.9
MsG0380016489.01.T01 AT4G11440 27.985 268 149 9 135 392 371 604 1.44e-11 66.6
MsG0380016489.01.T01 AT4G11440 27.985 268 149 9 135 392 371 604 1.44e-11 66.6
MsG0380016489.01.T01 AT1G14560 24.549 277 181 8 123 388 58 317 4.55e-11 63.9

Find 110 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCAAATAATGACAAATT+AGG 0.143139 3:+84179344 MsG0380016489.01.T01:CDS
ATTTAGGATTATTATGATTT+AGG 0.188122 3:-84179322 None:intergenic
TTGTCATTATTTGATGATTT+AGG 0.214682 3:-84179338 None:intergenic
CGGAAGCCATCCATGGGTTT+TGG 0.219669 3:-84179274 None:intergenic
ATGTTGTTTGCCGGTGATTT+AGG 0.221266 3:-84183538 None:intergenic
TAGAAGAAAACTTCTTAGTT+TGG 0.301366 3:+84182686 MsG0380016489.01.T01:CDS
GTCATGTTTCGGTCCAAATA+TGG 0.324704 3:+84179716 MsG0380016489.01.T01:CDS
TGTTGCAGTTGGAGCACTTT+TGG 0.326444 3:-84181007 None:intergenic
TGGTTCGTTGGCACGCTCAC+TGG 0.333788 3:+84181050 MsG0380016489.01.T01:CDS
CATCAAATAATGACAAATTA+GGG 0.361045 3:+84179345 MsG0380016489.01.T01:CDS
TGTTGTTTGCCGGTGATTTA+GGG 0.370918 3:-84183537 None:intergenic
GCCGGTATATTGAGTGTTCT+TGG 0.376648 3:+84182723 MsG0380016489.01.T01:CDS
TACCATTCTCTGCGATTTGT+TGG 0.379271 3:+84182559 MsG0380016489.01.T01:CDS
CGAGTTCTGGCAAGTTCAAT+AGG 0.383953 3:-84181090 None:intergenic
TGATTTAGGATAATTTGAAT+TGG 0.386186 3:-84179308 None:intergenic
TATTTCAGGAAGGCTTTACT+AGG 0.389389 3:+84180776 MsG0380016489.01.T01:intron
ACCAACTCGCGGACCAAAAC+CGG 0.390804 3:-84183459 None:intergenic
TCCTTTGTACCGAAAACAAT+CGG 0.399803 3:-84180600 None:intergenic
GAGAAAGGCGGCGCCGGCGG+CGG 0.401440 3:-84179387 None:intergenic
AGAAAACTTCTTAGTTTGGT+TGG 0.405793 3:+84182690 MsG0380016489.01.T01:CDS
TGCAACACCATATGTACCTT+TGG 0.413844 3:+84181023 MsG0380016489.01.T01:CDS
GGCGGAGAGAAAGGCGGCGC+CGG 0.414062 3:-84179393 None:intergenic
GGAGAGAAAGGCGGCGCCGG+CGG 0.416947 3:-84179390 None:intergenic
CTGGTCATGATGTTGTTTGC+CGG 0.426433 3:-84183547 None:intergenic
GCTATGATATATTCCGCAAC+TGG 0.429911 3:+84180968 MsG0380016489.01.T01:CDS
GAGGGGCACAAATGCTGGTC+TGG 0.434365 3:+84180804 MsG0380016489.01.T01:CDS
CTCAGAGATGGAGGCTTGAA+AGG 0.435489 3:+84183428 MsG0380016489.01.T01:intron
GGTCCGCGAGTTGGTCGAGC+TGG 0.437073 3:+84183467 MsG0380016489.01.T01:CDS
AGGAAGGCTTTACTAGGCTA+TGG 0.438594 3:+84180782 MsG0380016489.01.T01:intron
TATTTGTAAAATTATACAAC+AGG 0.446386 3:+84180634 MsG0380016489.01.T01:CDS
CTATGGAGGGGCACAAATGC+TGG 0.448613 3:+84180799 MsG0380016489.01.T01:CDS
ATCAGTAGAATGTCATGTTT+CGG 0.450546 3:+84179705 MsG0380016489.01.T01:CDS
GACAATGACGGCGGAGAGAA+AGG 0.462597 3:-84179402 None:intergenic
CCATATGTACCTTTGGTGGC+TGG 0.470715 3:+84181030 MsG0380016489.01.T01:CDS
CCAGCCACCAAAGGTACATA+TGG 0.474362 3:-84181030 None:intergenic
AGGTTGCAAGCACAAGCTGC+AGG 0.475586 3:+84179651 MsG0380016489.01.T01:CDS
GGTCGAGCTGGCCCCTCCGT+TGG 0.479589 3:+84183479 MsG0380016489.01.T01:CDS
ACCTGGAGTATTCCAGACTT+TGG 0.480063 3:+84181821 MsG0380016489.01.T01:CDS
TGTTGTTCGGAAGCCATCCA+TGG 0.481781 3:-84179281 None:intergenic
AAACTTCTTAGTTTGGTTGG+AGG 0.485679 3:+84182693 MsG0380016489.01.T01:CDS
CTGTTCCATGGAGTCCAGCC+CGG 0.488086 3:-84180562 None:intergenic
TGTTCCATGGAGTCCAGCCC+GGG 0.495606 3:-84180561 None:intergenic
GTTGCAGGAACTCTAGCGGC+TGG 0.498177 3:+84182768 MsG0380016489.01.T01:CDS
GACAGACACTGATAGAGATC+TGG 0.502105 3:+84183124 MsG0380016489.01.T01:CDS
GAACGCGCTTTCTCCGCCGC+CGG 0.503934 3:+84179374 MsG0380016489.01.T01:CDS
ACCTTTGGTGGCTGGTTCGT+TGG 0.504745 3:+84181038 MsG0380016489.01.T01:CDS
CGTGTCCTGTGGACTGGCAT+GGG 0.506549 3:+84182516 MsG0380016489.01.T01:CDS
AGACAACGCCTACCAAAGTC+TGG 0.507561 3:-84181833 None:intergenic
GGAGTATTCCAGACTTTGGT+AGG 0.512210 3:+84181825 MsG0380016489.01.T01:CDS
TTGAATTGGAGTTTGTTGTT+CGG 0.514291 3:-84179294 None:intergenic
CCTTTGTACCGAAAACAATC+GGG 0.520239 3:-84180599 None:intergenic
TAAAGTTTGCCCTAAATCAC+CGG 0.520255 3:+84183528 MsG0380016489.01.T01:CDS
AGTTATCGTGTCCTGTGGAC+TGG 0.521637 3:+84182510 MsG0380016489.01.T01:CDS
CAAGTTGGCAAGAAGCCACC+TGG 0.523320 3:+84181804 MsG0380016489.01.T01:CDS
AGAGGACCTTGGCAACATCA+AGG 0.528433 3:-84179430 None:intergenic
TCGTGTCCTGTGGACTGGCA+TGG 0.528693 3:+84182515 MsG0380016489.01.T01:CDS
AACACCATATGTACCTTTGG+TGG 0.530531 3:+84181026 MsG0380016489.01.T01:CDS
GGTACATATGGTGTTGCAGT+TGG 0.530637 3:-84181018 None:intergenic
GTTGTTCGGAAGCCATCCAT+GGG 0.533409 3:-84179280 None:intergenic
CCATCCTTTCTCAGAGATGG+AGG 0.535460 3:+84183419 MsG0380016489.01.T01:intron
TCTCCATCATGTACCCGGGC+TGG 0.535772 3:+84180548 MsG0380016489.01.T01:CDS
AATATTTGTGCCCTTGACAT+TGG 0.536147 3:-84181856 None:intergenic
ACTTGCCAGAACTCGTATGC+AGG 0.537143 3:+84181098 MsG0380016489.01.T01:CDS
CAATCCCCTTGATGTTGCCA+AGG 0.537891 3:+84179424 MsG0380016489.01.T01:CDS
GACCAACAAATCGCAGAGAA+TGG 0.538249 3:-84182561 None:intergenic
AAGGCTTTACTAGGCTATGG+AGG 0.540792 3:+84180785 MsG0380016489.01.T01:CDS
TGTACCCGGGCTGGACTCCA+TGG 0.541126 3:+84180557 MsG0380016489.01.T01:CDS
ACCAAAGTCTGGAATACTCC+AGG 0.547236 3:-84181822 None:intergenic
CGCAGAGAATGGTACATCAC+GGG 0.547764 3:-84182550 None:intergenic
GATGTTCTCCATCATGTACC+CGG 0.548614 3:+84180543 MsG0380016489.01.T01:CDS
GAGGACCTTGGCAACATCAA+GGG 0.549765 3:-84179429 None:intergenic
AGTCCAGCCCGGGTACATGA+TGG 0.554145 3:-84180551 None:intergenic
TGAATTCCTCGAACCAGTTG+CGG 0.570941 3:-84180981 None:intergenic
GTGCACCCATGCCAGTCCAC+AGG 0.572073 3:-84182521 None:intergenic
GCCAAGAACACTCAATATAC+CGG 0.573027 3:-84182724 None:intergenic
AGGCGTTGTCTCCAATGTCA+AGG 0.575701 3:+84181845 MsG0380016489.01.T01:CDS
CTCTATCAGTGTCTGTCTCG+TGG 0.575977 3:-84183118 None:intergenic
TATATTCCGCAACTGGTTCG+AGG 0.582284 3:+84180975 MsG0380016489.01.T01:CDS
GCATTTAAAGAGACTCAAGT+TGG 0.586081 3:+84181789 MsG0380016489.01.T01:CDS
GCTCTTGCAGTACCAACTGT+AGG 0.586720 3:+84180826 MsG0380016489.01.T01:CDS
TTGGTTGGAGGAGATGATGC+CGG 0.587114 3:+84182705 MsG0380016489.01.T01:CDS
GGTTGCAAGCACAAGCTGCA+GGG 0.588434 3:+84179652 MsG0380016489.01.T01:CDS
GACATAGTGATACTGTTCCA+TGG 0.593994 3:-84180574 None:intergenic
TTGACTAGTGAACCTACAGT+TGG 0.596380 3:-84180838 None:intergenic
GTTGCAAGCACAAGCTGCAG+GGG 0.611263 3:+84179653 MsG0380016489.01.T01:CDS
GGCGTTGTCTCCAATGTCAA+GGG 0.612254 3:+84181846 MsG0380016489.01.T01:CDS
GCCAACGAACCAGCCACCAA+AGG 0.612619 3:-84181039 None:intergenic
AGGACCTTGGCAACATCAAG+GGG 0.617908 3:-84179428 None:intergenic
GTGCACTTACAACTGTTCGA+TGG 0.620108 3:-84181879 None:intergenic
CCGAATCCAAAACCCATGGA+TGG 0.626321 3:+84179268 MsG0380016489.01.T01:CDS
GAAACGACAATTCCAACGGA+GGG 0.627885 3:-84183491 None:intergenic
TGCAAAGTTATCGTGTCCTG+TGG 0.628434 3:+84182505 MsG0380016489.01.T01:CDS
GGAATATATCATAGCAAGGA+AGG 0.628866 3:-84180960 None:intergenic
TCGCAGAGAATGGTACATCA+CGG 0.630194 3:-84182551 None:intergenic
AGGCTTTACTAGGCTATGGA+GGG 0.631179 3:+84180786 MsG0380016489.01.T01:CDS
TTGCGGAATATATCATAGCA+AGG 0.637280 3:-84180964 None:intergenic
ATGTTCTCCATCATGTACCC+GGG 0.637756 3:+84180544 MsG0380016489.01.T01:CDS
AGACACTGATAGAGATCTGG+AGG 0.643646 3:+84183127 MsG0380016489.01.T01:CDS
ATCAAGGGGATTGACAATGA+CGG 0.647324 3:-84179414 None:intergenic
CAGACCGAATCCAAAACCCA+TGG 0.657251 3:+84179264 MsG0380016489.01.T01:CDS
AAATGAAACGACAATTCCAA+CGG 0.660138 3:-84183495 None:intergenic
GGCTTTACTAGGCTATGGAG+GGG 0.661317 3:+84180787 MsG0380016489.01.T01:CDS
AAACGACAATTCCAACGGAG+GGG 0.665573 3:-84183490 None:intergenic
TGAAACGACAATTCCAACGG+AGG 0.672008 3:-84183492 None:intergenic
GGGCCAGCTCGACCAACTCG+CGG 0.675233 3:-84183470 None:intergenic
AATGACGGCGGAGAGAAAGG+CGG 0.683197 3:-84179399 None:intergenic
TTGTACCGAAAACAATCGGG+AGG 0.703695 3:-84180596 None:intergenic
CTACTGATGAGATTACTGAG+AGG 0.705135 3:-84179690 None:intergenic
AAGGGGATTGACAATGACGG+CGG 0.721836 3:-84179411 None:intergenic
AAAGTCTGGAATACTCCAGG+TGG 0.725173 3:-84181819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTCAATTAAGATAA+TGG + Chr3:84180171-84180190 MsG0380016489.01.T01:intron 10.0%
!! AAAATGAAATTAAAAAAAAG+TGG - Chr3:84179467-84179486 None:intergenic 10.0%
!! AAAATTTCAATTAAGATAAT+GGG + Chr3:84180172-84180191 MsG0380016489.01.T01:intron 10.0%
!! AAATGAAATTAAAAAAAAGT+GGG - Chr3:84179466-84179485 None:intergenic 10.0%
!! AAGAATAAAAGAAAATAATT+CGG - Chr3:84181142-84181161 None:intergenic 10.0%
!!! ATTGTCAAAATATTAATTTT+AGG + Chr3:84182084-84182103 MsG0380016489.01.T01:intron 10.0%
!!! GTATAAAAAAGATAATTTTA+AGG - Chr3:84181534-84181553 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAACCAA+TGG + Chr3:84181423-84181442 MsG0380016489.01.T01:intron 10.0%
!! AAAAAATTAATGTACATTGA+AGG + Chr3:84181929-84181948 MsG0380016489.01.T01:intron 15.0%
!! AAATTTCAATTAAGATAATG+GGG + Chr3:84180173-84180192 MsG0380016489.01.T01:intron 15.0%
!! AATGAACTGATAATTTAAAT+AGG + Chr3:84182190-84182209 MsG0380016489.01.T01:intron 15.0%
!! TATTTGTAAAATTATACAAC+AGG + Chr3:84180634-84180653 MsG0380016489.01.T01:CDS 15.0%
!! TTGAAAGAAAAAAAAAATAC+AGG - Chr3:84182875-84182894 None:intergenic 15.0%
!!! AAAAATCTTTTGATTTTTTC+TGG + Chr3:84181481-84181500 MsG0380016489.01.T01:intron 15.0%
!!! AAAATCTTTTGATTTTTTCT+GGG + Chr3:84181482-84181501 MsG0380016489.01.T01:intron 15.0%
!!! ATTTAGGATTATTATGATTT+AGG - Chr3:84179325-84179344 None:intergenic 15.0%
!!! TTTTTTATCTCTATTTTTTG+TGG - Chr3:84181913-84181932 None:intergenic 15.0%
!! AATTAAACAGTGATAAATCA+TGG - Chr3:84181345-84181364 None:intergenic 20.0%
!! ATTTATTCAATTGATCATGT+TGG + Chr3:84181593-84181612 MsG0380016489.01.T01:intron 20.0%
!! CATCAAATAATGACAAATTA+GGG + Chr3:84179345-84179364 MsG0380016489.01.T01:CDS 20.0%
!! TATCAATATAGTGATATAAC+TGG + Chr3:84183363-84183382 MsG0380016489.01.T01:intron 20.0%
!! TATTATAGAATAAACGTACT+TGG + Chr3:84180669-84180688 MsG0380016489.01.T01:intron 20.0%
!! TATTCAAATTATGATGATTG+TGG + Chr3:84181381-84181400 MsG0380016489.01.T01:intron 20.0%
!! TCATCAAATAATGACAAATT+AGG + Chr3:84179344-84179363 MsG0380016489.01.T01:CDS 20.0%
!! TCTGAAAAACAATATTAGAA+AGG - Chr3:84180508-84180527 None:intergenic 20.0%
!! TTGGTAAAAAATACTTATAG+TGG + Chr3:84179859-84179878 MsG0380016489.01.T01:intron 20.0%
!!! AAGCAAAAAAACTACATTTT+AGG + Chr3:84179991-84180010 MsG0380016489.01.T01:intron 20.0%
!!! AATTTTAAAATTTGTCGAGT+TGG + Chr3:84181987-84182006 MsG0380016489.01.T01:intron 20.0%
!!! ATAAATTTAAAACCTAGCAA+AGG + Chr3:84182443-84182462 MsG0380016489.01.T01:intron 20.0%
!!! ATTGTGATTTATTTTTTCTC+TGG + Chr3:84182941-84182960 MsG0380016489.01.T01:intron 20.0%
!!! ATTTTAAAAATTCATAGGGA+TGG + Chr3:84182244-84182263 MsG0380016489.01.T01:intron 20.0%
!!! CTATTTTGATAATCAATTGT+GGG + Chr3:84182363-84182382 MsG0380016489.01.T01:intron 20.0%
!!! TCAATATTTAGCTTTATTGT+TGG + Chr3:84179809-84179828 MsG0380016489.01.T01:intron 20.0%
!!! TGATTTAGGATAATTTGAAT+TGG - Chr3:84179311-84179330 None:intergenic 20.0%
!!! TTGTCATTATTTGATGATTT+AGG - Chr3:84179341-84179360 None:intergenic 20.0%
!!! TTGTGATTTATTTTTTCTCT+GGG + Chr3:84182942-84182961 MsG0380016489.01.T01:intron 20.0%
!!! TTTTTCTTTCAAGTTTCAAA+GGG + Chr3:84182883-84182902 MsG0380016489.01.T01:intron 20.0%
!!! TTTTTTCTTTCAAGTTTCAA+AGG + Chr3:84182882-84182901 MsG0380016489.01.T01:intron 20.0%
! AAAAATTGTCATTATCAGCT+AGG - Chr3:84180139-84180158 None:intergenic 25.0%
! AAACACAGAATATGATAACA+CGG - Chr3:84181704-84181723 None:intergenic 25.0%
! ATTGATTATCAAAATAGCCA+TGG - Chr3:84182360-84182379 None:intergenic 25.0%
! ATTGTCATAAAAGACTGAAA+AGG - Chr3:84179762-84179781 None:intergenic 25.0%
! ATTTACATTTCTGATCTCTT+TGG + Chr3:84182318-84182337 MsG0380016489.01.T01:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + Chr3:84180016-84180035 MsG0380016489.01.T01:intron 25.0%
! GATGTGACATATAAAAGAAT+AGG - Chr3:84180927-84180946 None:intergenic 25.0%
! GCGAATATGAAATAATCAAA+AGG - Chr3:84179509-84179528 None:intergenic 25.0%
! TAGAAGAAAACTTCTTAGTT+TGG + Chr3:84182686-84182705 MsG0380016489.01.T01:CDS 25.0%
! TATCACTGTTTAATTCCAAT+GGG + Chr3:84181350-84181369 MsG0380016489.01.T01:intron 25.0%
! TGATTTCTTGATTCTTTAGT+CGG + Chr3:84181663-84181682 MsG0380016489.01.T01:intron 25.0%
! TGTAAAATTATACAACAGGT+TGG + Chr3:84180638-84180657 MsG0380016489.01.T01:intron 25.0%
! TTAATACAACAACAACAATC+AGG + Chr3:84182133-84182152 MsG0380016489.01.T01:intron 25.0%
! TTATCACTGTTTAATTCCAA+TGG + Chr3:84181349-84181368 MsG0380016489.01.T01:intron 25.0%
! TTGATTATCAAAATAGCCAT+GGG - Chr3:84182359-84182378 None:intergenic 25.0%
! TTGTCATAAAAGACTGAAAA+GGG - Chr3:84179761-84179780 None:intergenic 25.0%
!! ACTATTTGGAATCCAAATTA+TGG - Chr3:84183157-84183176 None:intergenic 25.0%
!! ATTCTTTTATATGTCACATC+AGG + Chr3:84180927-84180946 MsG0380016489.01.T01:intron 25.0%
!! GAAAATTCTGTCTTTTTACA+AGG + Chr3:84180461-84180480 MsG0380016489.01.T01:intron 25.0%
!! GTATTGCTATGGATTTTATT+TGG + Chr3:84181615-84181634 MsG0380016489.01.T01:intron 25.0%
!! TTTTCTTCATTTATCAGACA+AGG + Chr3:84179631-84179650 MsG0380016489.01.T01:intron 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + Chr3:84180090-84180109 MsG0380016489.01.T01:intron 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG - Chr3:84179980-84179999 None:intergenic 25.0%
!!! GCTATTTTGATAATCAATTG+TGG + Chr3:84182362-84182381 MsG0380016489.01.T01:intron 25.0%
!!! TTATTTTTTCTCTGGGAAAT+AGG + Chr3:84182949-84182968 MsG0380016489.01.T01:intron 25.0%
AAATGAAACGACAATTCCAA+CGG - Chr3:84183498-84183517 None:intergenic 30.0%
AACACAGAATATGATAACAC+GGG - Chr3:84181703-84181722 None:intergenic 30.0%
ATACACGGATTCAAAAAACA+TGG - Chr3:84181198-84181217 None:intergenic 30.0%
ATAGAATAAACGTACTTGGA+CGG + Chr3:84180673-84180692 MsG0380016489.01.T01:intron 30.0%
ATCAAAAGCTGAAAAACACT+AGG - Chr3:84181647-84181666 None:intergenic 30.0%
ATCAGTAGAATGTCATGTTT+CGG + Chr3:84179705-84179724 MsG0380016489.01.T01:CDS 30.0%
CATTCATTTAATGATGCACA+TGG - Chr3:84180055-84180074 None:intergenic 30.0%
GAAAGGTCAAATTAATTGCT+CGG - Chr3:84180491-84180510 None:intergenic 30.0%
GCTAAATCCAATTGTTCAAT+CGG - Chr3:84182110-84182129 None:intergenic 30.0%
TAACTAAAACACATGACCAT+TGG - Chr3:84181442-84181461 None:intergenic 30.0%
TATATTCACTACAATTCACG+TGG + Chr3:84181555-84181574 MsG0380016489.01.T01:intron 30.0%
TATGTGAATAACAACTAGAC+TGG - Chr3:84180435-84180454 None:intergenic 30.0%
TCAAAAGCTGAAAAACACTA+GGG - Chr3:84181646-84181665 None:intergenic 30.0%
TCAATTATATGTCGCATAGA+TGG - Chr3:84183259-84183278 None:intergenic 30.0%
TGATCCATCTACAAAACATT+TGG - Chr3:84183078-84183097 None:intergenic 30.0%
TTAGTTAAAGAACTGCATTG+TGG + Chr3:84181455-84181474 MsG0380016489.01.T01:intron 30.0%
! AGAAAACTTCTTAGTTTGGT+TGG + Chr3:84182690-84182709 MsG0380016489.01.T01:CDS 30.0%
! AGATAGAGGTTTGTTTCATT+AGG + Chr3:84182829-84182848 MsG0380016489.01.T01:intron 30.0%
! TTTTATATGTCACATCAGGT+TGG + Chr3:84180931-84180950 MsG0380016489.01.T01:intron 30.0%
!! AAGATAATGGGGATAAAAGT+GGG + Chr3:84180184-84180203 MsG0380016489.01.T01:intron 30.0%
!! ATCTCTTTGGTTTGATTCTA+TGG + Chr3:84182331-84182350 MsG0380016489.01.T01:intron 30.0%
!! TAAGATAATGGGGATAAAAG+TGG + Chr3:84180183-84180202 MsG0380016489.01.T01:intron 30.0%
!! TGATTTGCTGTTTCAAGTAT+TGG + Chr3:84180868-84180887 MsG0380016489.01.T01:intron 30.0%
!! TTGAATTGGAGTTTGTTGTT+CGG - Chr3:84179297-84179316 None:intergenic 30.0%
!!! TGTTTCATTAGGTTTTGAGT+CGG + Chr3:84182840-84182859 MsG0380016489.01.T01:intron 30.0%
AAAAATCCAGACTGTGGAAT+AGG - Chr3:84181740-84181759 None:intergenic 35.0%
AAAATAAAACATGCACCCTC+AGG - Chr3:84181285-84181304 None:intergenic 35.0%
AAAGACTGAAAAGGGATGAA+AGG - Chr3:84179753-84179772 None:intergenic 35.0%
AATATTTGTGCCCTTGACAT+TGG - Chr3:84181859-84181878 None:intergenic 35.0%
AATTCCATCAACCAACGTAT+TGG - Chr3:84179930-84179949 None:intergenic 35.0%
ATAATTCCTATTCCACAGTC+TGG + Chr3:84181731-84181750 MsG0380016489.01.T01:intron 35.0%
CAAACTATGTAGACTCTGTT+TGG + Chr3:84179840-84179859 MsG0380016489.01.T01:intron 35.0%
CCTACCAAATCCTTTGATTA+AGG + Chr3:84182605-84182624 MsG0380016489.01.T01:intron 35.0%
CTAGATGACATTAGTTCAAG+AGG - Chr3:84183325-84183344 None:intergenic 35.0%
CTCTTGAACTAATGTCATCT+AGG + Chr3:84183323-84183342 MsG0380016489.01.T01:intron 35.0%
GACATTACATAATGAGACCA+CGG + Chr3:84180890-84180909 MsG0380016489.01.T01:intron 35.0%
GACTCCTTAATCAAAGGATT+TGG - Chr3:84182612-84182631 None:intergenic 35.0%
GAGTGGTATTTATTTCAGGA+AGG + Chr3:84180766-84180785 MsG0380016489.01.T01:intron 35.0%
GCATTTAAAGAGACTCAAGT+TGG + Chr3:84181789-84181808 MsG0380016489.01.T01:CDS 35.0%
GGAATATATCATAGCAAGGA+AGG - Chr3:84180963-84180982 None:intergenic 35.0%
GGACAAAAACGTACCATATT+TGG - Chr3:84179732-84179751 None:intergenic 35.0%
TAAACTCAAGCATAAAAGCG+CGG - Chr3:84183189-84183208 None:intergenic 35.0%
TAAAGTTTGCCCTAAATCAC+CGG + Chr3:84183528-84183547 MsG0380016489.01.T01:CDS 35.0%
TAGATGTTGCAAAAACTCGT+AGG + Chr3:84182805-84182824 MsG0380016489.01.T01:CDS 35.0%
TATAAGCTCGTATAACCGTT+TGG - Chr3:84180299-84180318 None:intergenic 35.0%
TATTTCAGGAAGGCTTTACT+AGG + Chr3:84180776-84180795 MsG0380016489.01.T01:intron 35.0%
TCCTGAAATAAATACCACTC+TGG - Chr3:84180766-84180785 None:intergenic 35.0%
TCCTTTGTACCGAAAACAAT+CGG - Chr3:84180603-84180622 None:intergenic 35.0%
TGATCATGTTGGTATTGCTA+TGG + Chr3:84181604-84181623 MsG0380016489.01.T01:intron 35.0%
TGTGGAATAGGAATTATAGC+TGG - Chr3:84181728-84181747 None:intergenic 35.0%
TTCTATATGTCACGCTTGTA+TGG + Chr3:84182285-84182304 MsG0380016489.01.T01:intron 35.0%
TTGATACCGTAGTTCAATCA+AGG - Chr3:84179793-84179812 None:intergenic 35.0%
TTGCGGAATATATCATAGCA+AGG - Chr3:84180967-84180986 None:intergenic 35.0%
TTGTTGCCTTGATTGAACTA+CGG + Chr3:84179784-84179803 MsG0380016489.01.T01:intron 35.0%
TTTACTGGTGTTTGGATCTT+TGG + Chr3:84181757-84181776 MsG0380016489.01.T01:intron 35.0%
TTTGTTAATCAATGCCAGAG+TGG + Chr3:84180749-84180768 MsG0380016489.01.T01:intron 35.0%
! AAACTTCTTAGTTTGGTTGG+AGG + Chr3:84182693-84182712 MsG0380016489.01.T01:CDS 35.0%
! AGAAATTCACTTAGAGCACT+AGG - Chr3:84183216-84183235 None:intergenic 35.0%
! CCTTAATCAAAGGATTTGGT+AGG - Chr3:84182608-84182627 None:intergenic 35.0%
! GAAATCGACTCCTTAATCAA+AGG - Chr3:84182618-84182637 None:intergenic 35.0%
! TCTGCCAAATGTTTTGTAGA+TGG + Chr3:84183071-84183090 MsG0380016489.01.T01:intron 35.0%
! TCTGGATTTTTACTGGTGTT+TGG + Chr3:84181749-84181768 MsG0380016489.01.T01:intron 35.0%
! TTTTAGGCCGATTGAACAAT+TGG + Chr3:84182100-84182119 MsG0380016489.01.T01:intron 35.0%
!! ACAGTTAACTTGCTCATACA+CGG - Chr3:84181213-84181232 None:intergenic 35.0%
!! AGATAATGGGGATAAAAGTG+GGG + Chr3:84180185-84180204 MsG0380016489.01.T01:intron 35.0%
!! CTTTCAAGTTTCAAAGGGAA+AGG + Chr3:84182888-84182907 MsG0380016489.01.T01:intron 35.0%
!! TTAAAATTTGTCGAGTTGGC+TGG + Chr3:84181991-84182010 MsG0380016489.01.T01:intron 35.0%
!! TTTGGATCTTTGGTTTGTGT+AGG + Chr3:84181767-84181786 MsG0380016489.01.T01:intron 35.0%
!!! AAAGGACTTTTTACCGGTTT+TGG + Chr3:84183446-84183465 MsG0380016489.01.T01:CDS 35.0%
AAAAACCTGCATACGAGTTC+TGG - Chr3:84181106-84181125 None:intergenic 40.0%
AAAAACTCGTAGGCAGATAG+AGG + Chr3:84182815-84182834 MsG0380016489.01.T01:CDS 40.0%
AAAGTGGGAAGAGAAGAAAG+AGG - Chr3:84179451-84179470 None:intergenic 40.0%
AAATCATGGCAGCAATGACT+TGG - Chr3:84181331-84181350 None:intergenic 40.0%
AACACCATATGTACCTTTGG+TGG + Chr3:84181026-84181045 MsG0380016489.01.T01:CDS 40.0%
AAGTTTCAAAGGGAAAGGAG+GGG + Chr3:84182893-84182912 MsG0380016489.01.T01:intron 40.0%
AATCAATTGTGGGACTGACT+AGG + Chr3:84182373-84182392 MsG0380016489.01.T01:intron 40.0%
ACCAGTAAAAATCCAGACTG+TGG - Chr3:84181746-84181765 None:intergenic 40.0%
AGAATGCTGATACCTTTGCT+AGG - Chr3:84182458-84182477 None:intergenic 40.0%
AGACGCTATAAGTTTGTGAG+AGG + Chr3:84180263-84180282 MsG0380016489.01.T01:intron 40.0%
AGAGGATGACCATTACCAAA+CGG + Chr3:84180281-84180300 MsG0380016489.01.T01:intron 40.0%
AGCCTTACAGTTACTATTGC+TGG + Chr3:84181251-84181270 MsG0380016489.01.T01:intron 40.0%
AGCTAAATAACCCCACTTAG+TGG - Chr3:84182166-84182185 None:intergenic 40.0%
ATCAAGGGGATTGACAATGA+CGG - Chr3:84179417-84179436 None:intergenic 40.0%
CAAGTTTCAAAGGGAAAGGA+GGG + Chr3:84182892-84182911 MsG0380016489.01.T01:intron 40.0%
CACGATAACTTTGCACTGTA+AGG - Chr3:84182500-84182519 None:intergenic 40.0%
CATAATGAGACCACGGAATT+TGG + Chr3:84180897-84180916 MsG0380016489.01.T01:intron 40.0%
CCTTTGTACCGAAAACAATC+GGG - Chr3:84180602-84180621 None:intergenic 40.0%
CGCGGATAAAGTCAACTATT+TGG - Chr3:84183171-84183190 None:intergenic 40.0%
CTACTGATGAGATTACTGAG+AGG - Chr3:84179693-84179712 None:intergenic 40.0%
CTCGTATAACCGTTTGGTAA+TGG - Chr3:84180293-84180312 None:intergenic 40.0%
GACATAGTGATACTGTTCCA+TGG - Chr3:84180577-84180596 None:intergenic 40.0%
GACCAGCAATAGTAACTGTA+AGG - Chr3:84181256-84181275 None:intergenic 40.0%
GCAAAACAGAGCTGTAATGT+GGG + Chr3:84180358-84180377 MsG0380016489.01.T01:intron 40.0%
GCAAGTTAACTGTCAGTTCA+TGG + Chr3:84181220-84181239 MsG0380016489.01.T01:intron 40.0%
GCCAAGAACACTCAATATAC+CGG - Chr3:84182727-84182746 None:intergenic 40.0%
GCCAGAGTGGTATTTATTTC+AGG + Chr3:84180762-84180781 MsG0380016489.01.T01:intron 40.0%
GCTAAATAACCCCACTTAGT+GGG - Chr3:84182165-84182184 None:intergenic 40.0%
GCTATGATATATTCCGCAAC+TGG + Chr3:84180968-84180987 MsG0380016489.01.T01:CDS 40.0%
GTCATGTTTCGGTCCAAATA+TGG + Chr3:84179716-84179735 MsG0380016489.01.T01:CDS 40.0%
TAACTGTGACTTAAACAGCG+TGG - Chr3:84181171-84181190 None:intergenic 40.0%
TACCATTCTCTGCGATTTGT+TGG + Chr3:84182559-84182578 MsG0380016489.01.T01:CDS 40.0%
TATGCATGCATCTGCACATT+TGG + Chr3:84183030-84183049 MsG0380016489.01.T01:intron 40.0%
TCAAGTTTCAAAGGGAAAGG+AGG + Chr3:84182891-84182910 MsG0380016489.01.T01:intron 40.0%
TGCAAAACAGAGCTGTAATG+TGG + Chr3:84180357-84180376 MsG0380016489.01.T01:intron 40.0%
TGCAACACCATATGTACCTT+TGG + Chr3:84181023-84181042 MsG0380016489.01.T01:CDS 40.0%
TGCAGATGCATGCATATAGA+AGG - Chr3:84183026-84183045 None:intergenic 40.0%
TGCTTATAATAGTGACCGGA+GGG + Chr3:84180094-84180113 MsG0380016489.01.T01:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG - Chr3:84179976-84179995 None:intergenic 40.0%
TTACCATCCTTTCTCAGAGA+TGG + Chr3:84183416-84183435 MsG0380016489.01.T01:intron 40.0%
TTGAAGGAGTCTGCTTACTT+TGG + Chr3:84181945-84181964 MsG0380016489.01.T01:intron 40.0%
TTGAATACAATGCTGCCCAT+TGG - Chr3:84181368-84181387 None:intergenic 40.0%
TTGACTAGTGAACCTACAGT+TGG - Chr3:84180841-84180860 None:intergenic 40.0%
TTGCTTATAATAGTGACCGG+AGG + Chr3:84180093-84180112 MsG0380016489.01.T01:intron 40.0%
TTGCTTATATTAGTGACCGG+AGG - Chr3:84179977-84179996 None:intergenic 40.0%
! ATAGCCAATACGTTGGTTGA+TGG + Chr3:84179923-84179942 MsG0380016489.01.T01:intron 40.0%
! ATGTTGTTTGCCGGTGATTT+AGG - Chr3:84183541-84183560 None:intergenic 40.0%
! ATTTGCTGATGACCTTGTAG+CGG + Chr3:84179900-84179919 MsG0380016489.01.T01:intron 40.0%
! CATTACAGCTCTGTTTTGCA+AGG - Chr3:84180357-84180376 None:intergenic 40.0%
! CGAGTTTTTGCAACATCTAG+TGG - Chr3:84182804-84182823 None:intergenic 40.0%
! GGCTTGAAAGGACTTTTTAC+CGG + Chr3:84183440-84183459 MsG0380016489.01.T01:CDS 40.0%
! TATGTCCTCCCGATTGTTTT+CGG + Chr3:84180591-84180610 MsG0380016489.01.T01:CDS 40.0%
! TCCACAGTCTGGATTTTTAC+TGG + Chr3:84181742-84181761 MsG0380016489.01.T01:intron 40.0%
! TCTGGAGGTATGCCATAATT+TGG + Chr3:84183142-84183161 MsG0380016489.01.T01:intron 40.0%
! TGTTGTTTGCCGGTGATTTA+GGG - Chr3:84183540-84183559 None:intergenic 40.0%
! TTTTCGGTACAAAGGAACAC+TGG + Chr3:84180607-84180626 MsG0380016489.01.T01:CDS 40.0%
! TTTTGTTGCAGGAACTCTAG+CGG + Chr3:84182764-84182783 MsG0380016489.01.T01:CDS 40.0%
!!! TTTTCAGCTGGTTTTGTTGC+AGG + Chr3:84182753-84182772 MsG0380016489.01.T01:CDS 40.0%
AAACGACAATTCCAACGGAG+GGG - Chr3:84183493-84183512 None:intergenic 45.0%
AAGGCTTTACTAGGCTATGG+AGG + Chr3:84180785-84180804 MsG0380016489.01.T01:CDS 45.0%
AATAGGTCAGCCAAATTCCG+TGG - Chr3:84180910-84180929 None:intergenic 45.0%
AGACACTGATAGAGATCTGG+AGG + Chr3:84183127-84183146 MsG0380016489.01.T01:CDS 45.0%
AGGAAGGCTTTACTAGGCTA+TGG + Chr3:84180782-84180801 MsG0380016489.01.T01:intron 45.0%
AGGCTTTACTAGGCTATGGA+GGG + Chr3:84180786-84180805 MsG0380016489.01.T01:CDS 45.0%
ATGTTCTCCATCATGTACCC+GGG + Chr3:84180544-84180563 MsG0380016489.01.T01:CDS 45.0%
GAAACGACAATTCCAACGGA+GGG - Chr3:84183494-84183513 None:intergenic 45.0%
GAAGAGAAGAAAGAGGACCT+TGG - Chr3:84179444-84179463 None:intergenic 45.0%
GACAGACACTGATAGAGATC+TGG + Chr3:84183124-84183143 MsG0380016489.01.T01:CDS 45.0%
GACCAACAAATCGCAGAGAA+TGG - Chr3:84182564-84182583 None:intergenic 45.0%
GATGTTCTCCATCATGTACC+CGG + Chr3:84180543-84180562 MsG0380016489.01.T01:CDS 45.0%
GCCGGTATATTGAGTGTTCT+TGG + Chr3:84182723-84182742 MsG0380016489.01.T01:CDS 45.0%
GTGCACTTACAACTGTTCGA+TGG - Chr3:84181882-84181901 None:intergenic 45.0%
TAACCCCACTTAGTGGGATA+AGG - Chr3:84182159-84182178 None:intergenic 45.0%
TCGCAGAGAATGGTACATCA+CGG - Chr3:84182554-84182573 None:intergenic 45.0%
TCTGCTATAAGCTAGCAGCT+TGG + Chr3:84180331-84180350 MsG0380016489.01.T01:intron 45.0%
TGAAACGACAATTCCAACGG+AGG - Chr3:84183495-84183514 None:intergenic 45.0%
TGAATTCCTCGAACCAGTTG+CGG - Chr3:84180984-84181003 None:intergenic 45.0%
TGCAAAGTTATCGTGTCCTG+TGG + Chr3:84182505-84182524 MsG0380016489.01.T01:CDS 45.0%
TTGTACCGAAAACAATCGGG+AGG - Chr3:84180599-84180618 None:intergenic 45.0%
! AAAGTCTGGAATACTCCAGG+TGG - Chr3:84181822-84181841 None:intergenic 45.0%
! ACCAAAGTCTGGAATACTCC+AGG - Chr3:84181825-84181844 None:intergenic 45.0%
! ACCTGGAGTATTCCAGACTT+TGG + Chr3:84181821-84181840 MsG0380016489.01.T01:CDS 45.0%
! AGCTGCTAGCTTATAGCAGA+TGG - Chr3:84180331-84180350 None:intergenic 45.0%
! CCCGATTGTTTTCGGTACAA+AGG + Chr3:84180599-84180618 MsG0380016489.01.T01:CDS 45.0%
! CGAGTTCTGGCAAGTTCAAT+AGG - Chr3:84181093-84181112 None:intergenic 45.0%
! GGAGTATTCCAGACTTTGGT+AGG + Chr3:84181825-84181844 MsG0380016489.01.T01:CDS 45.0%
! GGATTTGGTAGGAAACTCAC+AGG - Chr3:84182597-84182616 None:intergenic 45.0%
!! CCTCTAAAACATACACCCTC+CGG + Chr3:84179958-84179977 MsG0380016489.01.T01:intron 45.0%
!! CTTGGCGCAAATTTTTCAGC+TGG + Chr3:84182741-84182760 MsG0380016489.01.T01:CDS 45.0%
!! GGTACATATGGTGTTGCAGT+TGG - Chr3:84181021-84181040 None:intergenic 45.0%
!! TATATTCCGCAACTGGTTCG+AGG + Chr3:84180975-84180994 MsG0380016489.01.T01:CDS 45.0%
!! TGTTGCAGTTGGAGCACTTT+TGG - Chr3:84181010-84181029 None:intergenic 45.0%
!!! CCATCCATGGGTTTTGGATT+CGG - Chr3:84179271-84179290 None:intergenic 45.0%
!!! TATAAAAAAGATAATTTTAA+GGG - Chr3:84181533-84181552 None:intergenic 5.0%
!!! TTTAATTTTAAAAATTCATA+GGG + Chr3:84182240-84182259 MsG0380016489.01.T01:intron 5.0%
!!! TTTTAATTTTAAAAATTCAT+AGG + Chr3:84182239-84182258 MsG0380016489.01.T01:intron 5.0%
AAGGGGATTGACAATGACGG+CGG - Chr3:84179414-84179433 None:intergenic 50.0%
ACTTGCCAGAACTCGTATGC+AGG + Chr3:84181098-84181117 MsG0380016489.01.T01:CDS 50.0%
AGACAACGCCTACCAAAGTC+TGG - Chr3:84181836-84181855 None:intergenic 50.0%
AGAGGACCTTGGCAACATCA+AGG - Chr3:84179433-84179452 None:intergenic 50.0%
AGGACCTTGGCAACATCAAG+GGG - Chr3:84179431-84179450 None:intergenic 50.0%
AGTTATCGTGTCCTGTGGAC+TGG + Chr3:84182510-84182529 MsG0380016489.01.T01:CDS 50.0%
CAATCCCCTTGATGTTGCCA+AGG + Chr3:84179424-84179443 MsG0380016489.01.T01:CDS 50.0%
CAGACCGAATCCAAAACCCA+TGG + Chr3:84179264-84179283 MsG0380016489.01.T01:CDS 50.0%
CCATCCTTTCTCAGAGATGG+AGG + Chr3:84183419-84183438 MsG0380016489.01.T01:intron 50.0%
CCGAATCCAAAACCCATGGA+TGG + Chr3:84179268-84179287 MsG0380016489.01.T01:CDS 50.0%
CGCAGAGAATGGTACATCAC+GGG - Chr3:84182553-84182572 None:intergenic 50.0%
CTCAGAGATGGAGGCTTGAA+AGG + Chr3:84183428-84183447 MsG0380016489.01.T01:intron 50.0%
CTCTATCAGTGTCTGTCTCG+TGG - Chr3:84183121-84183140 None:intergenic 50.0%
GAGGACCTTGGCAACATCAA+GGG - Chr3:84179432-84179451 None:intergenic 50.0%
GCTCTTGCAGTACCAACTGT+AGG + Chr3:84180826-84180845 MsG0380016489.01.T01:CDS 50.0%
GGCGTTGTCTCCAATGTCAA+GGG + Chr3:84181846-84181865 MsG0380016489.01.T01:CDS 50.0%
GGCTTTACTAGGCTATGGAG+GGG + Chr3:84180787-84180806 MsG0380016489.01.T01:CDS 50.0%
GTTGTTCGGAAGCCATCCAT+GGG - Chr3:84179283-84179302 None:intergenic 50.0%
GTTTGATTCTATGGCGCCCA+TGG + Chr3:84182340-84182359 MsG0380016489.01.T01:intron 50.0%
TGCATCTCAAGAAACGCTGC+AGG + Chr3:84180231-84180250 MsG0380016489.01.T01:intron 50.0%
TGTTGTTCGGAAGCCATCCA+TGG - Chr3:84179284-84179303 None:intergenic 50.0%
TTGGTTGGAGGAGATGATGC+CGG + Chr3:84182705-84182724 MsG0380016489.01.T01:CDS 50.0%
TTTCAAAGGGAAAGGAGGGG+TGG + Chr3:84182896-84182915 MsG0380016489.01.T01:intron 50.0%
! AGGCCTTATCCCACTAAGTG+GGG + Chr3:84182153-84182172 MsG0380016489.01.T01:intron 50.0%
! AGGCGTTGTCTCCAATGTCA+AGG + Chr3:84181845-84181864 MsG0380016489.01.T01:CDS 50.0%
! CAAGCCTCCATCTCTGAGAA+AGG - Chr3:84183426-84183445 None:intergenic 50.0%
! CAGGCCTTATCCCACTAAGT+GGG + Chr3:84182152-84182171 MsG0380016489.01.T01:intron 50.0%
! CCAGCCACCAAAGGTACATA+TGG - Chr3:84181033-84181052 None:intergenic 50.0%
! CCATATGTACCTTTGGTGGC+TGG + Chr3:84181030-84181049 MsG0380016489.01.T01:CDS 50.0%
! CCTCCATCTCTGAGAAAGGA+TGG - Chr3:84183422-84183441 None:intergenic 50.0%
! TCAGGCCTTATCCCACTAAG+TGG + Chr3:84182151-84182170 MsG0380016489.01.T01:intron 50.0%
!! CCGGAGGGTGTATGTTTTAG+AGG - Chr3:84179961-84179980 None:intergenic 50.0%
!! CGTATTGGCTATCCGCTACA+AGG - Chr3:84179915-84179934 None:intergenic 50.0%
!! GTAGCGGATAGCCAATACGT+TGG + Chr3:84179916-84179935 MsG0380016489.01.T01:intron 50.0%
AACATGCACCCTCAGGAGTC+AGG - Chr3:84181278-84181297 None:intergenic 55.0%
AATGACGGCGGAGAGAAAGG+CGG - Chr3:84179402-84179421 None:intergenic 55.0%
ACCAACTCGCGGACCAAAAC+CGG - Chr3:84183462-84183481 None:intergenic 55.0%
AGGTTGCAAGCACAAGCTGC+AGG + Chr3:84179651-84179670 MsG0380016489.01.T01:CDS 55.0%
ATTGCTGGTCCTGACTCCTG+AGG + Chr3:84181266-84181285 MsG0380016489.01.T01:intron 55.0%
CTGCTATCAGCTACACCCTC+CGG - Chr3:84180112-84180131 None:intergenic 55.0%
GACAATGACGGCGGAGAGAA+AGG - Chr3:84179405-84179424 None:intergenic 55.0%
GGTTGCAAGCACAAGCTGCA+GGG + Chr3:84179652-84179671 MsG0380016489.01.T01:CDS 55.0%
GTTGCAAGCACAAGCTGCAG+GGG + Chr3:84179653-84179672 MsG0380016489.01.T01:CDS 55.0%
TTGCTGGTCCTGACTCCTGA+GGG + Chr3:84181267-84181286 MsG0380016489.01.T01:intron 55.0%
! CAAGTTGGCAAGAAGCCACC+TGG + Chr3:84181804-84181823 MsG0380016489.01.T01:CDS 55.0%
! CGGAAGCCATCCATGGGTTT+TGG - Chr3:84179277-84179296 None:intergenic 55.0%
! CTATGGAGGGGCACAAATGC+TGG + Chr3:84180799-84180818 MsG0380016489.01.T01:CDS 55.0%
!! ACCTTTGGTGGCTGGTTCGT+TGG + Chr3:84181038-84181057 MsG0380016489.01.T01:CDS 55.0%
AGTCCAGCCCGGGTACATGA+TGG - Chr3:84180554-84180573 None:intergenic 60.0%
CTGTTCCATGGAGTCCAGCC+CGG - Chr3:84180565-84180584 None:intergenic 60.0%
GCCAACGAACCAGCCACCAA+AGG - Chr3:84181042-84181061 None:intergenic 60.0%
GTTGCAGGAACTCTAGCGGC+TGG + Chr3:84182768-84182787 MsG0380016489.01.T01:CDS 60.0%
TCTCCATCATGTACCCGGGC+TGG + Chr3:84180548-84180567 MsG0380016489.01.T01:CDS 60.0%
TGGTTCGTTGGCACGCTCAC+TGG + Chr3:84181050-84181069 MsG0380016489.01.T01:CDS 60.0%
TGTTCCATGGAGTCCAGCCC+GGG - Chr3:84180564-84180583 None:intergenic 60.0%
! GAGGGGCACAAATGCTGGTC+TGG + Chr3:84180804-84180823 MsG0380016489.01.T01:CDS 60.0%
!! ACCGGTTTTGGTCCGCGAGT+TGG + Chr3:84183458-84183477 MsG0380016489.01.T01:CDS 60.0%
!! CGTGTCCTGTGGACTGGCAT+GGG + Chr3:84182516-84182535 MsG0380016489.01.T01:CDS 60.0%
!! TCGTGTCCTGTGGACTGGCA+TGG + Chr3:84182515-84182534 MsG0380016489.01.T01:CDS 60.0%
GTGCACCCATGCCAGTCCAC+AGG - Chr3:84182524-84182543 None:intergenic 65.0%
! TGTACCCGGGCTGGACTCCA+TGG + Chr3:84180557-84180576 MsG0380016489.01.T01:CDS 65.0%
GAACGCGCTTTCTCCGCCGC+CGG + Chr3:84179374-84179393 MsG0380016489.01.T01:CDS 70.0%
GGGCCAGCTCGACCAACTCG+CGG - Chr3:84183473-84183492 None:intergenic 70.0%
!! GGTCCGCGAGTTGGTCGAGC+TGG + Chr3:84183467-84183486 MsG0380016489.01.T01:CDS 70.0%
GGCGGAGAGAAAGGCGGCGC+CGG - Chr3:84179396-84179415 None:intergenic 75.0%
GGTCGAGCTGGCCCCTCCGT+TGG + Chr3:84183479-84183498 MsG0380016489.01.T01:CDS 75.0%
! GGAGAGAAAGGCGGCGCCGG+CGG - Chr3:84179393-84179412 None:intergenic 75.0%
!!! GAGAAAGGCGGCGCCGGCGG+CGG - Chr3:84179390-84179409 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84179251 84183565 84179251 ID=MsG0380016489.01;Name=MsG0380016489.01
Chr3 mRNA 84179251 84183565 84179251 ID=MsG0380016489.01.T01;Parent=MsG0380016489.01;Name=MsG0380016489.01.T01;_AED=0.38;_eAED=0.39;_QI=0|0|0|1|1|1|10|0|398
Chr3 exon 84179251 84179445 84179251 ID=MsG0380016489.01.T01:exon:33389;Parent=MsG0380016489.01.T01
Chr3 exon 84179648 84179737 84179648 ID=MsG0380016489.01.T01:exon:33390;Parent=MsG0380016489.01.T01
Chr3 exon 84180527 84180655 84180527 ID=MsG0380016489.01.T01:exon:33391;Parent=MsG0380016489.01.T01
Chr3 exon 84180784 84180855 84180784 ID=MsG0380016489.01.T01:exon:33392;Parent=MsG0380016489.01.T01
Chr3 exon 84180949 84181119 84180949 ID=MsG0380016489.01.T01:exon:33393;Parent=MsG0380016489.01.T01
Chr3 exon 84181789 84181891 84181789 ID=MsG0380016489.01.T01:exon:33394;Parent=MsG0380016489.01.T01
Chr3 exon 84182505 84182596 84182505 ID=MsG0380016489.01.T01:exon:33395;Parent=MsG0380016489.01.T01
Chr3 exon 84182684 84182836 84182684 ID=MsG0380016489.01.T01:exon:33396;Parent=MsG0380016489.01.T01
Chr3 exon 84183090 84183148 84183090 ID=MsG0380016489.01.T01:exon:33397;Parent=MsG0380016489.01.T01
Chr3 exon 84183433 84183565 84183433 ID=MsG0380016489.01.T01:exon:33398;Parent=MsG0380016489.01.T01
Chr3 CDS 84179251 84179445 84179251 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84179648 84179737 84179648 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84180527 84180655 84180527 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84180784 84180855 84180784 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84180949 84181119 84180949 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84181789 84181891 84181789 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84182505 84182596 84182505 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84182684 84182836 84182684 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84183090 84183148 84183090 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Chr3 CDS 84183433 84183565 84183433 ID=MsG0380016489.01.T01:cds;Parent=MsG0380016489.01.T01
Gene Sequence

>MsG0380016489.01.T01

ATGGTCGATTCTGCAGACCGAATCCAAAACCCATGGATGGCTTCCGAACAACAAACTCCAATTCAAATTATCCTAAATCATAATAATCCTAAATCATCAAATAATGACAAATTAGGGATTGCTGAACGCGCTTTCTCCGCCGCCGGCGCCGCCTTTCTCTCCGCCGTCATTGTCAATCCCCTTGATGTTGCCAAGACAAGGTTGCAAGCACAAGCTGCAGGGGTTGCTTATTCTCATCCTCTCAGTAATCTCATCAGTAGAATGTCATGTTTCGGTCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCATCATGTACCCGGGCTGGACTCCATGGAACAGTATCACTATGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTGGATGTTATTTGTAAAATTATACAACAGGAAGGCTTTACTAGGCTATGGAGGGGCACAAATGCTGGTCTGGCTCTTGCAGTACCAACTGTAGGTTCACTAGTTGGAATTTACCTTCCTTGCTATGATATATTCCGCAACTGGTTCGAGGAATTCACAGCCAAAAGTGCTCCAACTGCAACACCATATGTACCTTTGGTGGCTGGTTCGTTGGCACGCTCACTGGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAGAACTCGTATGCAGGCATTTAAAGAGACTCAAGTTGGCAAGAAGCCACCTGGAGTATTCCAGACTTTGGTAGGCGTTGTCTCCAATGTCAAGGGCACAAATATTCCATCGAACAGTTTGCAAAGTTATCGTGTCCTGTGGACTGGCATGGGTGCACAACTTGCCCGTGATGTACCATTCTCTGCGATTTGTTGGTCAACACTTGAGCCTACTAGAAGAAAACTTCTTAGTTTGGTTGGAGGAGATGATGCCGGTATATTGAGTGTTCTTGGCGCAAATTTTTCAGCTGGTTTTGTTGCAGGAACTCTAGCGGCTGGAGCTACATGTCCACTAGATGTTGCAAAAACTCGTAGGCAGATAGAGATGGATCATGTTAGAGCATTGAAAATGACCACGAGACAGACACTGATAGAGATCTGGAGAGATGGAGGCTTGAAAGGACTTTTTACCGGTTTTGGTCCGCGAGTTGGTCGAGCTGGCCCCTCCGTTGGAATTGTCGTTTCATTTTATGAAGTTGTAAAGTTTGCCCTAAATCACCGGCAAACAACATCATGA
Protein sequence

>MsG0380016489.01.T01

MVDSADRIQNPWMASEQQTPIQIILNHNNPKSSNNDKLGIAERAFSAAGAAFLSAVIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMSCFGPNMMFADLRCSPSCTRAGLHGTVSLCPPDCFRYKGTLDVICKIIQQEGFTRLWRGTNAGLALAVPTVGSLVGIYLPCYDIFRNWFEEFTAKSAPTATPYVPLVAGSLARSLACATCYPIELARTRMQAFKETQVGKKPPGVFQTLVGVVSNVKGTNIPSNSLQSYRVLWTGMGAQLARDVPFSAICWSTLEPTRRKLLSLVGGDDAGILSVLGANFSAGFVAGTLAAGATCPLDVAKTRRQIEMDHVRALKMTTRQTLIEIWRDGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKFALNHRQTTS*