AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016491.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016491.01.T01 MTR_3g090850 92.199 282 6 1 10 275 28 309 0.0 508
MsG0380016491.01.T01 MTR_1g028470 54.325 289 69 11 6 275 29 273 4.85e-76 233
MsG0380016491.01.T01 MTR_2g022280 41.905 210 63 5 83 276 1 167 1.11e-39 137
MsG0380016491.01.T01 MTR_0194s0050 35.606 264 109 8 28 275 141 359 3.10e-33 125
MsG0380016491.01.T01 MTR_3g099620 31.624 234 105 7 59 276 96 290 7.76e-24 98.6
MsG0380016491.01.T01 MTR_8g066770 31.980 197 77 4 81 261 112 267 1.61e-22 95.1
MsG0380016491.01.T01 MTR_1g082480 33.028 218 81 5 81 276 134 308 2.92e-21 92.0
MsG0380016491.01.T01 MTR_1g082480 33.180 217 80 5 81 275 134 307 4.91e-21 91.3
MsG0380016491.01.T01 MTR_7g113830 28.114 281 141 7 12 276 49 284 1.36e-20 89.7
MsG0380016491.01.T01 MTR_5g064950 29.487 234 106 7 59 276 80 270 2.53e-19 85.9
MsG0380016491.01.T01 MTR_5g064950 29.614 233 105 7 59 275 80 269 9.76e-19 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016491.01.T01 AT5G53210 51.045 335 85 11 6 275 24 344 3.39e-75 234
MsG0380016491.01.T01 AT5G53210 51.190 336 85 11 6 276 24 345 6.49e-75 233
MsG0380016491.01.T01 AT3G06120 37.799 209 78 4 83 275 1 173 5.52e-34 122
MsG0380016491.01.T01 AT3G24140 35.565 239 95 6 57 275 175 374 1.79e-30 118
MsG0380016491.01.T01 AT3G24140 35.565 239 95 6 57 275 175 374 1.87e-30 118
MsG0380016491.01.T01 AT1G72210 30.151 199 106 5 81 276 123 291 1.58e-18 84.0
MsG0380016491.01.T01 AT1G72210 30.151 199 106 5 81 276 123 291 2.31e-18 83.6
MsG0380016491.01.T01 AT4G01460 49.275 69 19 2 81 133 113 181 1.64e-11 63.9
MsG0380016491.01.T01 AT4G01460 49.275 69 19 2 81 133 113 181 1.64e-11 63.9
MsG0380016491.01.T01 AT5G46690 30.168 179 63 6 81 235 86 226 5.01e-11 62.8
MsG0380016491.01.T01 AT5G46690 30.168 179 63 6 81 235 86 226 7.77e-11 62.0

Find 45 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATCTCTTTGCCATTT+TGG 0.180476 3:+84227368 None:intergenic
ATGTAGCTTTGTTGCATTCT+TGG 0.204975 3:-84229532 None:intergenic
CTAGTTGGTTGTGGAGTTCT+TGG 0.246531 3:-84229499 None:intergenic
TGTGGAGTTCTTGGACTAAT+TGG 0.288248 3:-84229490 None:intergenic
TTCTTTGTTTCTTAGCTTCA+AGG 0.307021 3:-84229369 None:intergenic
GAAGTGACCTCATTCTCTTT+TGG 0.319139 3:-84227448 None:intergenic
GTTTCTTAGCTTCAAGGGCT+TGG 0.330395 3:-84229363 None:intergenic
TGTTGCATTCTTGGCTTGTA+AGG 0.333897 3:-84229523 None:intergenic
CTTGGACTTGGAACTAATCT+TGG 0.340912 3:-84229415 None:intergenic
AACTTGAAACTGAACCTAAA+AGG 0.343348 3:+84227527 MsG0380016491.01.T01:CDS
TCTTCTAGAACTCTCCAAAA+TGG 0.349433 3:-84227382 None:intergenic
AAGTTTAGTCTTGGACTTAG+AGG 0.354427 3:-84229466 None:intergenic
GGACTTAGTGGTGAAGGTCT+TGG 0.391894 3:-84229433 None:intergenic
ACTGTTTCTCAACGAATTCC+AGG 0.392508 3:+84229697 MsG0380016491.01.T01:CDS
CTTGGCTTGTAAGGACTAGT+TGG 0.398269 3:-84229514 None:intergenic
CTAATTGGCAAGTTTAGTCT+TGG 0.398977 3:-84229475 None:intergenic
TTGACCTCCACGTCAGCAAT+AGG 0.436432 3:-84229646 None:intergenic
ATCTGTTCCTCAAGCAAAGA+TGG 0.472890 3:-84227568 None:intergenic
TCTTTGTTTCTTAGCTTCAA+GGG 0.473972 3:-84229368 None:intergenic
TTTCTTGGACTTAGTGGTGA+AGG 0.477916 3:-84229439 None:intergenic
GAGGAAGTAGAGGAACTAGT+AGG 0.492572 3:-84229580 None:intergenic
CAGTGCTGATGGACAACAAA+GGG 0.493882 3:+84227594 MsG0380016491.01.T01:CDS
GTAGAGGAACTAGTAGGAGA+TGG 0.502378 3:-84229574 None:intergenic
ATAATCTTCAAAGCTTGTCC+TGG 0.509002 3:-84229715 None:intergenic
GGTCACTTCGACATCGAGAT+TGG 0.509922 3:+84227462 MsG0380016491.01.T01:CDS
AGTGGTGAAGGTCTTGGACT+TGG 0.521437 3:-84229427 None:intergenic
TTGTAAGGACTAGTTGGTTG+TGG 0.524571 3:-84229508 None:intergenic
TACTACTCCAAAAGAGAATG+AGG 0.530957 3:+84227441 MsG0380016491.01.T01:CDS
GTTGAACTCCTTCACTATCA+AGG 0.535634 3:+84229807 MsG0380016491.01.T01:CDS
CTAGTAGGAGATGGATCAAG+AGG 0.552519 3:-84229565 None:intergenic
GAACAGATTAACAGTGCTGA+TGG 0.553866 3:+84227583 MsG0380016491.01.T01:CDS
GCTTACACCATCTTTGCTTG+AGG 0.567717 3:+84227561 MsG0380016491.01.T01:CDS
CTCAGAATCTTGCAGCGAAG+AGG 0.567938 3:-84227500 None:intergenic
TTTAGTCTTGGACTTAGAGG+TGG 0.583231 3:-84229463 None:intergenic
ATCATTGACTGAGGAAGTAG+AGG 0.588412 3:-84229590 None:intergenic
GTCTCCTATTGCTGACGTGG+AGG 0.609724 3:+84229642 MsG0380016491.01.T01:CDS
TTACTGTGGAGCGCAACAGA+AGG 0.616988 3:+84227626 MsG0380016491.01.T01:CDS
GCTTCAACTTGATTGATGAG+AGG 0.624063 3:-84227418 None:intergenic
AAAGTCTCCTATTGCTGACG+TGG 0.628049 3:+84229639 MsG0380016491.01.T01:CDS
AAGTACTATTAATGTTAACA+TGG 0.635453 3:-84229771 None:intergenic
TAAACGTACCTTGATAGTGA+AGG 0.635932 3:-84229815 None:intergenic
ATTGATGTTATCATTGACTG+AGG 0.636012 3:-84229599 None:intergenic
GATAGTGAAGGAGTTCAACA+TGG 0.664739 3:-84229803 None:intergenic
AAGGGTTTCTCATATTACTG+TGG 0.670712 3:+84227612 MsG0380016491.01.T01:CDS
ACAGTGCTGATGGACAACAA+AGG 0.726440 3:+84227593 MsG0380016491.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAATAAAATAGCATT+TGG + Chr3:84227851-84227870 MsG0380016491.01.T01:intron 10.0%
!!! AAGAAAAGTATATAAATAAA+GGG + Chr3:84228680-84228699 MsG0380016491.01.T01:intron 10.0%
!!! TAAATTTTTGAACAATTTTT+TGG - Chr3:84228277-84228296 None:intergenic 10.0%
!!! TAAGAAAAGTATATAAATAA+AGG + Chr3:84228679-84228698 MsG0380016491.01.T01:intron 10.0%
!! AAATGCTATTAAAATTAAGT+AGG - Chr3:84227965-84227984 None:intergenic 15.0%
!! AATCTTAGAAAAAAAATGAT+GGG - Chr3:84228451-84228470 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - Chr3:84227964-84227983 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + Chr3:84228186-84228205 MsG0380016491.01.T01:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG + Chr3:84228744-84228763 MsG0380016491.01.T01:intron 15.0%
!! CTAAAAATGCTATTAAAATT+AGG + Chr3:84228372-84228391 MsG0380016491.01.T01:intron 15.0%
!! TAATCTTAGAAAAAAAATGA+TGG - Chr3:84228452-84228471 None:intergenic 15.0%
!! TAATGCAACTAATTTAATTA+GGG + Chr3:84229281-84229300 MsG0380016491.01.T01:intron 15.0%
!! TATATATGTCAAAAAGTAAA+TGG + Chr3:84229996-84230015 MsG0380016491.01.T01:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + Chr3:84228743-84228762 MsG0380016491.01.T01:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - Chr3:84228304-84228285 None:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG + Chr3:84228221-84228240 MsG0380016491.01.T01:intron 15.0%
!!! AGAAAAGTATATAAATAAAG+GGG + Chr3:84228681-84228700 MsG0380016491.01.T01:intron 15.0%
!! AAACAAATTTGAATTGAGTA+GGG + Chr3:84228315-84228334 MsG0380016491.01.T01:intron 20.0%
!! AAATGCTATTAAAATTAGGT+AGG + Chr3:84228376-84228395 MsG0380016491.01.T01:intron 20.0%
!! AAGTACTATTAATGTTAACA+TGG - Chr3:84229774-84229793 None:intergenic 20.0%
!! AAGTTGTATTGAAATTGAAA+TGG + Chr3:84228775-84228794 MsG0380016491.01.T01:intron 20.0%
!! AATGCTATTAAAATTAGGTA+GGG + Chr3:84228377-84228396 MsG0380016491.01.T01:intron 20.0%
!! AGTTGTATTGAAATTGAAAT+GGG + Chr3:84228776-84228795 MsG0380016491.01.T01:intron 20.0%
!! ATTAAATTAGTTGCATTAGA+TGG - Chr3:84229279-84229298 None:intergenic 20.0%
!! CTAATGCAACTAATTTAATT+AGG + Chr3:84229280-84229299 MsG0380016491.01.T01:intron 20.0%
!! GAAAGTGAATATATTGTATT+GGG + Chr3:84228703-84228722 MsG0380016491.01.T01:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + Chr3:84228314-84228333 MsG0380016491.01.T01:intron 20.0%
!! TTAAATTAGTTGCATTAGAT+GGG - Chr3:84229278-84229297 None:intergenic 20.0%
!!! AAACACGTTAAAATCATTTT+TGG + Chr3:84227889-84227908 MsG0380016491.01.T01:intron 20.0%
!!! AACACGTTAAAATCATTTTT+GGG + Chr3:84227890-84227909 MsG0380016491.01.T01:intron 20.0%
!!! GGACACTTTTTTTAAAAAAT+GGG + Chr3:84228811-84228830 MsG0380016491.01.T01:intron 20.0%
!!! TAAGTGTATATTTGTTTCTA+TGG + Chr3:84227713-84227732 MsG0380016491.01.T01:intron 20.0%
!!! TATACTTGATTTTATTGTGA+TGG - Chr3:84229910-84229929 None:intergenic 20.0%
! AGTGCAGAAAAACAAAATTA+GGG + Chr3:84228348-84228367 MsG0380016491.01.T01:intron 25.0%
! ATTTAAGCACAATGAAAACA+TGG - Chr3:84228511-84228530 None:intergenic 25.0%
! CTATTGAAGAGTAAAAAGAA+AGG - Chr3:84229875-84229894 None:intergenic 25.0%
! GGAAAGTGAATATATTGTAT+TGG + Chr3:84228702-84228721 MsG0380016491.01.T01:intron 25.0%
! TAAATTAGTTGCATTAGATG+GGG - Chr3:84229277-84229296 None:intergenic 25.0%
! TAACAAGTCAATTACTTACT+GGG + Chr3:84228531-84228550 MsG0380016491.01.T01:intron 25.0%
! TTAACAAGTCAATTACTTAC+TGG + Chr3:84228530-84228549 MsG0380016491.01.T01:intron 25.0%
!! CTTTCTTTTTACTCTTCAAT+AGG + Chr3:84229873-84229892 MsG0380016491.01.T01:intron 25.0%
!! TTGATGTACTTTAAAAGTAG+TGG + Chr3:84230020-84230039 MsG0380016491.01.T01:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - Chr3:84228026-84228045 None:intergenic 25.0%
!!! ATTTGATTACTTTTTGTGCA+CGG + Chr3:84229066-84229085 MsG0380016491.01.T01:intron 25.0%
!!! GGGACACTTTTTTTAAAAAA+TGG + Chr3:84228810-84228829 MsG0380016491.01.T01:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - Chr3:84228027-84228046 None:intergenic 25.0%
AAAAAATGGGTCAGTTATTC+CGG + Chr3:84228824-84228843 MsG0380016491.01.T01:intron 30.0%
AACAAGTCAATTACTTACTG+GGG + Chr3:84228532-84228551 MsG0380016491.01.T01:intron 30.0%
AACTTGAAACTGAACCTAAA+AGG + Chr3:84227527-84227546 MsG0380016491.01.T01:CDS 30.0%
ACAGCAACAAATTATAATGG+AGG - Chr3:84228877-84228896 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + Chr3:84228089-84228108 MsG0380016491.01.T01:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG + Chr3:84228347-84228366 MsG0380016491.01.T01:intron 30.0%
GCTACTTATGTGTTCAATTT+AGG + Chr3:84230169-84230188 MsG0380016491.01.T01:intron 30.0%
TAAACTTGCACATCTAAGTA+TGG - Chr3:84228604-84228623 None:intergenic 30.0%
TACTTAGATGTGCAAGTTTA+AGG + Chr3:84228604-84228623 MsG0380016491.01.T01:intron 30.0%
TATCAAGGTACGTTTATTCT+TGG + Chr3:84229822-84229841 MsG0380016491.01.T01:intron 30.0%
TGAGTGATTATGAAGGTTTA+TGG + Chr3:84228559-84228578 MsG0380016491.01.T01:intron 30.0%
! ACAGTTTTCAAAAGAACATG+AGG - Chr3:84229682-84229701 None:intergenic 30.0%
! ATGTTAAAGATCACGTTTTG+AGG + Chr3:84227797-84227816 MsG0380016491.01.T01:intron 30.0%
! ATTGATGTTATCATTGACTG+AGG - Chr3:84229602-84229621 None:intergenic 30.0%
! TCTTTGTTTCTTAGCTTCAA+GGG - Chr3:84229371-84229390 None:intergenic 30.0%
! TTCTTTGTTTCTTAGCTTCA+AGG - Chr3:84229372-84229391 None:intergenic 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + Chr3:84228789-84228808 MsG0380016491.01.T01:intron 30.0%
!! CATTATAATTTGTTGCTGTG+GGG + Chr3:84228878-84228897 MsG0380016491.01.T01:intron 30.0%
!! CCATTATAATTTGTTGCTGT+GGG + Chr3:84228877-84228896 MsG0380016491.01.T01:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + Chr3:84228408-84228427 MsG0380016491.01.T01:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - Chr3:84228427-84228408 None:intergenic 30.0%
!! TCCATTATAATTTGTTGCTG+TGG + Chr3:84228876-84228895 MsG0380016491.01.T01:intron 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + Chr3:84228790-84228809 MsG0380016491.01.T01:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + Chr3:84228407-84228426 MsG0380016491.01.T01:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - Chr3:84228426-84228407 None:intergenic 30.0%
AAAAATGGGTCAGTTATTCC+GGG + Chr3:84228825-84228844 MsG0380016491.01.T01:intron 35.0%
AAGGGTTTCTCATATTACTG+TGG + Chr3:84227612-84227631 MsG0380016491.01.T01:CDS 35.0%
AAGTAGGGACTAAACTTACA+AGG - Chr3:84227949-84227968 None:intergenic 35.0%
ATAATCTTCAAAGCTTGTCC+TGG - Chr3:84229718-84229737 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+GGG - Chr3:84228644-84228663 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG - Chr3:84228645-84228664 None:intergenic 35.0%
CCCACAGCAACAAATTATAA+TGG - Chr3:84228880-84228899 None:intergenic 35.0%
CTAATTGGCAAGTTTAGTCT+TGG - Chr3:84229478-84229497 None:intergenic 35.0%
GATCAAGCATCAATAATTGG+AGG + Chr3:84229305-84229324 MsG0380016491.01.T01:intron 35.0%
GGAGATCAAGCATCAATAAT+TGG + Chr3:84229302-84229321 MsG0380016491.01.T01:intron 35.0%
GTAGTTATGCAATCAATGCA+TGG + Chr3:84229119-84229138 MsG0380016491.01.T01:intron 35.0%
TACTACTCCAAAAGAGAATG+AGG + Chr3:84227441-84227460 MsG0380016491.01.T01:CDS 35.0%
TCACAGTAAAAAACTGCACT+AGG - Chr3:84229965-84229984 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - Chr3:84228658-84228677 None:intergenic 35.0%
TGAGGACAAATGTCTGAATA+AGG - Chr3:84230105-84230124 None:intergenic 35.0%
! ACCCTTTTGACATAAAAGCA+AGG - Chr3:84227694-84227713 None:intergenic 35.0%
! ATACGTCTTTTCAGCAAATG+AGG - Chr3:84230123-84230142 None:intergenic 35.0%
! ATGAGCACTTGTCTGTTTTA+AGG + Chr3:84227659-84227678 MsG0380016491.01.T01:CDS 35.0%
!! AAGTTTAGTCTTGGACTTAG+AGG - Chr3:84229469-84229488 None:intergenic 35.0%
!! ATGTAGCTTTGTTGCATTCT+TGG - Chr3:84229535-84229554 None:intergenic 35.0%
!! GCATTGATTGCATAACTACA+AGG - Chr3:84229118-84229137 None:intergenic 35.0%
!! GCCTTGCTTTTATGTCAAAA+GGG + Chr3:84227690-84227709 MsG0380016491.01.T01:CDS 35.0%
!! TAAACGTACCTTGATAGTGA+AGG - Chr3:84229818-84229837 None:intergenic 35.0%
!! TCTTCTAGAACTCTCCAAAA+TGG - Chr3:84227385-84227404 None:intergenic 35.0%
!! TGCCTTGCTTTTATGTCAAA+AGG + Chr3:84227689-84227708 MsG0380016491.01.T01:CDS 35.0%
AGGTAGGGACTAAACTTACA+AGG + Chr3:84228392-84228411 MsG0380016491.01.T01:intron 40.0%
ATATTTCACTGCACCTCTCT+GGG + Chr3:84230049-84230068 MsG0380016491.01.T01:intron 40.0%
ATCTGTTCCTCAAGCAAAGA+TGG - Chr3:84227571-84227590 None:intergenic 40.0%
CCGGTATAATTGACCTACTT+TGG + Chr3:84228642-84228661 MsG0380016491.01.T01:intron 40.0%
CTTGGACTTGGAACTAATCT+TGG - Chr3:84229418-84229437 None:intergenic 40.0%
GATAGTGAAGGAGTTCAACA+TGG - Chr3:84229806-84229825 None:intergenic 40.0%
GATGCATGTTACATGTACCT+TGG - Chr3:84230078-84230097 None:intergenic 40.0%
GCTTCAACTTGATTGATGAG+AGG - Chr3:84227421-84227440 None:intergenic 40.0%
GGGTCAATGAGTGATTATGA+AGG + Chr3:84228552-84228571 MsG0380016491.01.T01:intron 40.0%
GTTGAACTCCTTCACTATCA+AGG + Chr3:84229807-84229826 MsG0380016491.01.T01:CDS 40.0%
TATATTTCACTGCACCTCTC+TGG + Chr3:84230048-84230067 MsG0380016491.01.T01:intron 40.0%
TGCAATCAATGCATGGAAGA+TGG + Chr3:84229126-84229145 MsG0380016491.01.T01:intron 40.0%
TGCACATCTAAGTATGGTAG+AGG - Chr3:84228598-84228617 None:intergenic 40.0%
TGTGGAGTTCTTGGACTAAT+TGG - Chr3:84229493-84229512 None:intergenic 40.0%
TTCCCCGAGAATAGAAAATC+CGG - Chr3:84229094-84229113 None:intergenic 40.0%
TTTCTTGGACTTAGTGGTGA+AGG - Chr3:84229442-84229461 None:intergenic 40.0%
! ACTGTTTCTCAACGAATTCC+AGG + Chr3:84229697-84229716 MsG0380016491.01.T01:CDS 40.0%
! AGCTTCTGTCTCTTCCTTTT+AGG - Chr3:84227544-84227563 None:intergenic 40.0%
! ATCATTGACTGAGGAAGTAG+AGG - Chr3:84229593-84229612 None:intergenic 40.0%
! GAACAGATTAACAGTGCTGA+TGG + Chr3:84227583-84227602 MsG0380016491.01.T01:CDS 40.0%
! GAAGTGACCTCATTCTCTTT+TGG - Chr3:84227451-84227470 None:intergenic 40.0%
!! CGGAGAGAGTATCAAAGATA+TGG + Chr3:84228849-84228868 MsG0380016491.01.T01:intron 40.0%
!! TGTTGCATTCTTGGCTTGTA+AGG - Chr3:84229526-84229545 None:intergenic 40.0%
!! TTGTAAGGACTAGTTGGTTG+TGG - Chr3:84229511-84229530 None:intergenic 40.0%
!! TTTAGTCTTGGACTTAGAGG+TGG - Chr3:84229466-84229485 None:intergenic 40.0%
AAAAAGAGCTGCGTGAATGC+AGG - Chr3:84228904-84228923 None:intergenic 45.0%
AAAGTCTCCTATTGCTGACG+TGG + Chr3:84229639-84229658 MsG0380016491.01.T01:CDS 45.0%
ATGGTAGAGGTCACTTGTCT+AGG - Chr3:84228585-84228604 None:intergenic 45.0%
CTAGTAGGAGATGGATCAAG+AGG - Chr3:84229568-84229587 None:intergenic 45.0%
CTAGTTGGTTGTGGAGTTCT+TGG - Chr3:84229502-84229521 None:intergenic 45.0%
GAGGAAGTAGAGGAACTAGT+AGG - Chr3:84229583-84229602 None:intergenic 45.0%
GATGGGGTGCATAAAGGAAA+TGG - Chr3:84229261-84229280 None:intergenic 45.0%
GCATTAGATGGGGTGCATAA+AGG - Chr3:84229267-84229286 None:intergenic 45.0%
GCTTACACCATCTTTGCTTG+AGG + Chr3:84227561-84227580 MsG0380016491.01.T01:CDS 45.0%
GTAGAGGAACTAGTAGGAGA+TGG - Chr3:84229577-84229596 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG - Chr3:84228640-84228659 None:intergenic 45.0%
GTTTCTTAGCTTCAAGGGCT+TGG - Chr3:84229366-84229385 None:intergenic 45.0%
TATTTCACTGCACCTCTCTG+GGG + Chr3:84230050-84230069 MsG0380016491.01.T01:intron 45.0%
TCCCCGAGAATAGAAAATCC+GGG - Chr3:84229093-84229112 None:intergenic 45.0%
! ACCCGGATTTTCTATTCTCG+GGG + Chr3:84229089-84229108 MsG0380016491.01.T01:intron 45.0%
! GACCCGGATTTTCTATTCTC+GGG + Chr3:84229088-84229107 MsG0380016491.01.T01:intron 45.0%
! GGACCCGGATTTTCTATTCT+CGG + Chr3:84229087-84229106 MsG0380016491.01.T01:intron 45.0%
! GGACTTAGAGGTGGTTTTCT+TGG - Chr3:84229457-84229476 None:intergenic 45.0%
! GGTGGTTTTCTTGGACTTAG+TGG - Chr3:84229448-84229467 None:intergenic 45.0%
!! ACAGTGCTGATGGACAACAA+AGG + Chr3:84227593-84227612 MsG0380016491.01.T01:CDS 45.0%
!! CAGTGCTGATGGACAACAAA+GGG + Chr3:84227594-84227613 MsG0380016491.01.T01:CDS 45.0%
!! CTTGGCTTGTAAGGACTAGT+TGG - Chr3:84229517-84229536 None:intergenic 45.0%
!!! TTACTTTTTGTGCACGGACC+CGG + Chr3:84229072-84229091 MsG0380016491.01.T01:intron 45.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - Chr3:84227994-84228013 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - Chr3:84227993-84228012 None:intergenic 5.0%
AGTGGTGAAGGTCTTGGACT+TGG - Chr3:84229430-84229449 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + Chr3:84228829-84228848 MsG0380016491.01.T01:intron 50.0%
CTCAGAATCTTGCAGCGAAG+AGG - Chr3:84227503-84227522 None:intergenic 50.0%
CTTTGATACTCTCTCCGTCC+CGG - Chr3:84228846-84228865 None:intergenic 50.0%
GGACTTAGTGGTGAAGGTCT+TGG - Chr3:84229436-84229455 None:intergenic 50.0%
GGTCACTTCGACATCGAGAT+TGG + Chr3:84227462-84227481 MsG0380016491.01.T01:CDS 50.0%
GTCAATTATACCGGGACGGA+GGG - Chr3:84228636-84228655 None:intergenic 50.0%
TTACTGTGGAGCGCAACAGA+AGG + Chr3:84227626-84227645 MsG0380016491.01.T01:CDS 50.0%
TTGACCTCCACGTCAGCAAT+AGG - Chr3:84229649-84229668 None:intergenic 50.0%
! GACGTGGAGGTCAAGTTTTC+AGG + Chr3:84229655-84229674 MsG0380016491.01.T01:CDS 50.0%
AAGGTATACTCCCTCCGTCC+CGG + Chr3:84228623-84228642 MsG0380016491.01.T01:intron 55.0%
GGTCAATTATACCGGGACGG+AGG - Chr3:84228637-84228656 None:intergenic 55.0%
GTCTCCTATTGCTGACGTGG+AGG + Chr3:84229642-84229661 MsG0380016491.01.T01:CDS 55.0%
TGTACCTTGGCACCCCAGAG+AGG - Chr3:84230065-84230084 None:intergenic 60.0%
!! TGCACCTCTCTGGGGTGCCA+AGG + Chr3:84230058-84230077 MsG0380016491.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 84227370 84230199 84227370 ID=MsG0380016491.01;Name=MsG0380016491.01
Chr3 mRNA 84227370 84230199 84227370 ID=MsG0380016491.01.T01;Parent=MsG0380016491.01;Name=MsG0380016491.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|276
Chr3 exon 84227370 84227711 84227370 ID=MsG0380016491.01.T01:exon:33419;Parent=MsG0380016491.01.T01
Chr3 exon 84229349 84229828 84229349 ID=MsG0380016491.01.T01:exon:33420;Parent=MsG0380016491.01.T01
Chr3 exon 84230191 84230199 84230191 ID=MsG0380016491.01.T01:exon:33421;Parent=MsG0380016491.01.T01
Chr3 CDS 84227370 84227711 84227370 ID=MsG0380016491.01.T01:cds;Parent=MsG0380016491.01.T01
Chr3 CDS 84229349 84229828 84229349 ID=MsG0380016491.01.T01:cds;Parent=MsG0380016491.01.T01
Chr3 CDS 84230191 84230199 84230191 ID=MsG0380016491.01.T01:cds;Parent=MsG0380016491.01.T01
Gene Sequence

>MsG0380016491.01.T01

ATGATCTCTTTGCCATTTTGGAGAGTTCTAGAAGATTTCACTGATTTTCCTCTCATCAATCAAGTTGAAGCTACTACTCCAAAAGAGAATGAGGTCACTTCGACATCGAGATTGGTGTCTCAAAAATCAACCTCTTCGCTGCAAGATTCTGAGACTGAACTTGAAACTGAACCTAAAAGGAAGAGACAGAAGCTTACACCATCTTTGCTTGAGGAACAGATTAACAGTGCTGATGGACAACAAAGGGTTTCTCATATTACTGTGGAGCGCAACAGAAGGAAGCAAATGAATGAGCACTTGTCTGTTTTAAGGTCACTTATGCCTTGCTTTTATGTCAAAAGGTTGCAACAACTACTCCAAGCCCTTGAAGCTAAGAAACAAAGAAAAGTATACAGTGAAGTTCTAAGTCCAAGATTAGTTCCAAGTCCAAGACCTTCACCACTAAGTCCAAGAAAACCACCTCTAAGTCCAAGACTAAACTTGCCAATTAGTCCAAGAACTCCACAACCAACTAGTCCTTACAAGCCAAGAATGCAACAAAGCTACATTGCACTATCACCTCTTGATCCATCTCCTACTAGTTCCTCTACTTCCTCAGTCAATGATAACATCAATGAGCTTGTTGCTAATTCAAAGTCTCCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTTTCTCAACGAATTCCAGGACAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTCCATGTTAACATTAATAGTACTTCTGATGATACCATGTTGAACTCCTTCACTATCAAGGTCCAGTAA
Protein sequence

>MsG0380016491.01.T01

MISLPFWRVLEDFTDFPLINQVEATTPKENEVTSTSRLVSQKSTSSLQDSETELETEPKRKRQKLTPSLLEEQINSADGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRLQQLLQALEAKKQRKVYSEVLSPRLVPSPRPSPLSPRKPPLSPRLNLPISPRTPQPTSPYKPRMQQSYIALSPLDPSPTSSSTSSVNDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIISALEDLALEILHVNINSTSDDTMLNSFTIKVQ*