AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016620.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016620.01.T01 MTR_3g092110 94.783 230 12 0 1 230 1 230 3.20e-161 449
MsG0380016620.01.T01 MTR_1g028320 62.911 213 69 4 30 237 37 244 1.10e-84 255
MsG0380016620.01.T01 MTR_1g028330 58.108 222 84 5 11 229 21 236 4.35e-79 241
MsG0380016620.01.T01 MTR_5g045000 47.305 167 87 1 65 230 12 178 4.74e-52 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016620.01.T01 AT5G24400 74.251 167 42 1 65 230 82 248 3.23e-91 272
MsG0380016620.01.T01 AT3G49360 60.894 179 65 2 64 237 4 182 4.11e-75 229
MsG0380016620.01.T01 AT5G24410 61.818 165 59 1 71 231 18 182 2.19e-69 214
MsG0380016620.01.T01 AT5G24420 56.140 171 71 1 71 237 12 182 1.53e-65 204
MsG0380016620.01.T01 AT1G13700 51.149 174 84 1 65 237 12 185 5.32e-58 185
MsG0380016620.01.T01 AT1G13700 51.149 174 84 1 65 237 12 185 5.32e-58 185
MsG0380016620.01.T01 AT1G13700 51.149 174 84 1 65 237 12 185 5.32e-58 185

Find 60 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTCACTGTTTGTTTATC+TGG 0.223963 3:-85810327 MsG0380016620.01.T01:CDS
ATTCTCTCTGGTGGTGGTTT+TGG 0.248823 3:+85807944 None:intergenic
AGTAACATGAGATCAAATTT+TGG 0.262107 3:+85808060 None:intergenic
GGGCTAAATGGCATGTGTTT+TGG 0.280558 3:-85810150 MsG0380016620.01.T01:CDS
AGAGAGATCAGCGACATATT+TGG 0.303753 3:+85810374 None:intergenic
TTACTATCATCATGAGTCTT+TGG 0.318838 3:+85810109 None:intergenic
GCTGAAAGTGGACGCAAGTT+TGG 0.321612 3:+85810537 None:intergenic
AAGGGAAAGCGATGCGATTC+GGG 0.328256 3:+85810566 None:intergenic
CTGAAAGTGGACGCAAGTTT+GGG 0.349865 3:+85810538 None:intergenic
ATTCTATTGAATGGGCTAAA+TGG 0.357891 3:-85810162 MsG0380016620.01.T01:CDS
AAAGGGAAAGCGATGCGATT+CGG 0.380936 3:+85810565 None:intergenic
CATGTAGCTTCTTTGTTCCC+AGG 0.399055 3:-85808018 MsG0380016620.01.T01:CDS
AAAGAAGCTACATGCCCGTC+AGG 0.412823 3:+85808027 None:intergenic
AAATTTGATCTCATGTTACT+TGG 0.414181 3:-85808057 MsG0380016620.01.T01:CDS
CTTCCACTTTCACCCACTCT+TGG 0.419260 3:-85810605 MsG0380016620.01.T01:CDS
AAGGTAAATGTTATTCTCTC+TGG 0.421011 3:+85807932 None:intergenic
TGATCTCATGTTACTTGGCA+TGG 0.426304 3:-85808052 MsG0380016620.01.T01:CDS
AATAAGTTCACTCGCGAAAG+AGG 0.439481 3:-85810351 MsG0380016620.01.T01:CDS
GAACCGTTTGTTGTTGTGTT+TGG 0.448527 3:+85810473 None:intergenic
AATGTTATTCTCTCTGGTGG+TGG 0.456542 3:+85807938 None:intergenic
CGTATGTCGATTCTATTGAA+TGG 0.460290 3:-85810171 MsG0380016620.01.T01:CDS
GATCTCATGTTACTTGGCAT+GGG 0.461657 3:-85808051 MsG0380016620.01.T01:CDS
GGCAGCTCCCTCAGCTGAAA+GGG 0.463885 3:+85808155 None:intergenic
ATGTAGCTTCTTTGTTCCCA+GGG 0.483220 3:-85808017 MsG0380016620.01.T01:CDS
CGGCAGCTCCCTCAGCTGAA+AGG 0.485041 3:+85808154 None:intergenic
TTACTTGGCATGGGCCCTGA+CGG 0.487291 3:-85808042 MsG0380016620.01.T01:CDS
GTATGTCGATTCTATTGAAT+GGG 0.489113 3:-85810170 MsG0380016620.01.T01:CDS
GACGCAAGTTTGGGTTTGAA+AGG 0.493797 3:+85810547 None:intergenic
CAACAAACGGTTCGTTTGCA+AGG 0.499477 3:-85810463 MsG0380016620.01.T01:CDS
TAAACATTACCAGGTGGAAT+GGG 0.500202 3:+85808192 None:intergenic
TTCACTGTTTGTTTATCTGG+TGG 0.513156 3:-85810324 MsG0380016620.01.T01:CDS
TACTTGGCATGGGCCCTGAC+GGG 0.519693 3:-85808041 MsG0380016620.01.T01:CDS
TTTCGACCCTTCAGATTCAA+AGG 0.522939 3:-85810504 MsG0380016620.01.T01:CDS
AAAGAGAATTGAGCTGAAAG+TGG 0.523546 3:+85810525 None:intergenic
TAACCAAGAGTGGGTGAAAG+TGG 0.527010 3:+85810602 None:intergenic
TCGCCAAACACAACAACAAA+CGG 0.530329 3:-85810476 MsG0380016620.01.T01:CDS
CAAGGTGGTGAAATCTTCAA+TGG 0.530806 3:-85810445 MsG0380016620.01.T01:CDS
TTGATTGCGTAAACATTACC+AGG 0.544706 3:+85808183 None:intergenic
CGTGCACAAGAGGGTGCCCT+GGG 0.544738 3:+85808001 None:intergenic
TCGTGCACAAGAGGGTGCCC+TGG 0.545437 3:+85808000 None:intergenic
TGGCAGGTGCCCATTCCACC+TGG 0.549190 3:-85808201 MsG0380016620.01.T01:intron
ACGCAAGTTTGGGTTTGAAA+GGG 0.549926 3:+85810548 None:intergenic
CGAGACATGTGTCAAACACT+TGG 0.551519 3:-85808124 MsG0380016620.01.T01:CDS
GTAAACATTACCAGGTGGAA+TGG 0.552378 3:+85808191 None:intergenic
GTAAATGTTATTCTCTCTGG+TGG 0.576193 3:+85807935 None:intergenic
AATGATGCCCTTTCAGCTGA+GGG 0.585393 3:-85808162 MsG0380016620.01.T01:CDS
CAATGATGCCCTTTCAGCTG+AGG 0.587933 3:-85808163 MsG0380016620.01.T01:CDS
GATGACACCTTTGAATCTGA+AGG 0.598385 3:+85810497 None:intergenic
TGTTGAGATGTAACCAAGAG+TGG 0.609804 3:+85810592 None:intergenic
TTGTGATTATAGGAAACTGT+TGG 0.611417 3:-85810200 MsG0380016620.01.T01:intron
AAATCCACTGGTTGATGATG+AGG 0.624003 3:+85808083 None:intergenic
ATGACACCTTTGAATCTGAA+GGG 0.626493 3:+85810498 None:intergenic
GACACATGTCTCGTAATCGT+CGG 0.630010 3:+85808134 None:intergenic
CATTCAATAGAATCGACATA+CGG 0.643403 3:+85810172 None:intergenic
AAGAAGCTACATGCCCGTCA+GGG 0.651830 3:+85808028 None:intergenic
CAAACGGTTCGTTTGCAAGG+TGG 0.654959 3:-85810460 MsG0380016620.01.T01:CDS
GTTGAGATGTAACCAAGAGT+GGG 0.688248 3:+85810593 None:intergenic
AGGGAAAGCGATGCGATTCG+GGG 0.689816 3:+85810567 None:intergenic
ATAACCTCATCATCAACCAG+TGG 0.699932 3:-85808087 MsG0380016620.01.T01:CDS
ATTGCGTAAACATTACCAGG+TGG 0.709051 3:+85808186 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAGTTATTAAATGTT+AGG - Chr3:85808816-85808835 MsG0380016620.01.T01:intron 10.0%
!!! CTATTTTTTTATGTTTTTTA+AGG - Chr3:85808506-85808525 MsG0380016620.01.T01:intron 10.0%
!! TAAAAATAACTACAAAATGT+TGG - Chr3:85810154-85810173 MsG0380016620.01.T01:CDS 15.0%
!! TAATTCATAAAATTAAGACA+TGG - Chr3:85808883-85808902 MsG0380016620.01.T01:intron 15.0%
!!! TCACTTAATTTTTGTTTAAT+AGG + Chr3:85809373-85809392 None:intergenic 15.0%
!! AAATTTCTTGTACAATACAA+TGG - Chr3:85809302-85809321 MsG0380016620.01.T01:intron 20.0%
!! TAAAAAAATAGAACATACCT+TGG + Chr3:85808497-85808516 None:intergenic 20.0%
!! TTGATCATTCCTATAAAATA+AGG - Chr3:85810065-85810084 MsG0380016620.01.T01:intron 20.0%
!!! AATTAGTGAGATTTTACTTA+TGG - Chr3:85809131-85809150 MsG0380016620.01.T01:intron 20.0%
!!! ATTTTTTATATCACTCAACA+AGG - Chr3:85808934-85808953 MsG0380016620.01.T01:intron 20.0%
!!! TTGTAGTTATTTTTACATTG+CGG + Chr3:85810149-85810168 None:intergenic 20.0%
!!! TTTTTTATATCACTCAACAA+GGG - Chr3:85808935-85808954 MsG0380016620.01.T01:intron 20.0%
! AAATTTGATCTCATGTTACT+TGG - Chr3:85810494-85810513 MsG0380016620.01.T01:CDS 25.0%
! ACTAATAGAAGACTATGTAA+GGG + Chr3:85810281-85810300 None:intergenic 25.0%
! TACTAATAGAAGACTATGTA+AGG + Chr3:85810282-85810301 None:intergenic 25.0%
! TAGCGTTGTTCAATTTAAAT+AGG + Chr3:85808601-85808620 None:intergenic 25.0%
! TTATTGCAGACCTAAAAAAA+GGG - Chr3:85809913-85809932 MsG0380016620.01.T01:intron 25.0%
! TTCATAAAATTAAGACATGG+TGG - Chr3:85808886-85808905 MsG0380016620.01.T01:intron 25.0%
! TTGACTTTATCTATTCTTGA+TGG + Chr3:85809422-85809441 None:intergenic 25.0%
!! AGTAACATGAGATCAAATTT+TGG + Chr3:85810494-85810513 None:intergenic 25.0%
!! TCACAATTAGAAAACCATTT+TGG - Chr3:85809517-85809536 MsG0380016620.01.T01:intron 25.0%
!!! GTCAACACTAAAGTATTTTT+AGG - Chr3:85809437-85809456 MsG0380016620.01.T01:intron 25.0%
!!! TTAATAGATGCCCTTTTTTT+AGG + Chr3:85809926-85809945 None:intergenic 25.0%
!!! TTAGAAAACCATTTTGGAAT+TGG - Chr3:85809523-85809542 MsG0380016620.01.T01:intron 25.0%
!!! TTGATTTGTGTTGTGATTAT+AGG - Chr3:85808341-85808360 MsG0380016620.01.T01:intron 25.0%
AAAGAACAGTTTGCATATGT+GGG + Chr3:85809066-85809085 None:intergenic 30.0%
AGAGAGATTCATATCAAACT+AGG - Chr3:85809877-85809896 MsG0380016620.01.T01:intron 30.0%
CAACACTTTGTACTAAATAG+CGG - Chr3:85809727-85809746 MsG0380016620.01.T01:intron 30.0%
CATTCAATAGAATCGACATA+CGG + Chr3:85808382-85808401 None:intergenic 30.0%
CTAATAGAAGACTATGTAAG+GGG + Chr3:85810280-85810299 None:intergenic 30.0%
GAAAAAAGATGAAGAGTCAT+AGG - Chr3:85808991-85809010 MsG0380016620.01.T01:intron 30.0%
GTTATTGCAGACCTAAAAAA+AGG - Chr3:85809912-85809931 MsG0380016620.01.T01:intron 30.0%
TAATTGCATTACACTACTAG+TGG + Chr3:85809116-85809135 None:intergenic 30.0%
TTACTATCATCATGAGTCTT+TGG + Chr3:85808445-85808464 None:intergenic 30.0%
TTCTTGATGGAACTTAATGT+TGG + Chr3:85809409-85809428 None:intergenic 30.0%
TTGTGATTATAGGAAACTGT+TGG - Chr3:85808351-85808370 MsG0380016620.01.T01:intron 30.0%
TTGTGCACGAGAATAAAAAT+GGG - Chr3:85810564-85810583 MsG0380016620.01.T01:CDS 30.0%
TTTACATTGCGGTTATAAAG+TGG + Chr3:85810138-85810157 None:intergenic 30.0%
TTTAGGAAGAGTTGAAAAAG+AGG - Chr3:85809454-85809473 MsG0380016620.01.T01:intron 30.0%
! CTGAAGTATAAATGCTACTT+AGG - Chr3:85808748-85808767 MsG0380016620.01.T01:intron 30.0%
! TAAAATTAAGACATGGTGGA+TGG - Chr3:85808890-85808909 MsG0380016620.01.T01:intron 30.0%
!! AAAAAAGGGCATCTATTAAG+TGG - Chr3:85809927-85809946 MsG0380016620.01.T01:intron 30.0%
!! AACTATAAGCTTGCTTTTGA+TGG - Chr3:85808463-85808482 MsG0380016620.01.T01:intron 30.0%
!! ACTATAAGCTTGCTTTTGAT+GGG - Chr3:85808464-85808483 MsG0380016620.01.T01:intron 30.0%
!! ATCAAATTTTGGAAATCCAC+TGG + Chr3:85810483-85810502 None:intergenic 30.0%
!! ATTCTATTGAATGGGCTAAA+TGG - Chr3:85808389-85808408 MsG0380016620.01.T01:intron 30.0%
!! GTATGTCGATTCTATTGAAT+GGG - Chr3:85808381-85808400 MsG0380016620.01.T01:intron 30.0%
!! TAGTACAAAGTGTTGACAAA+CGG + Chr3:85809722-85809741 None:intergenic 30.0%
!! TGAACTTGTTTTCCAACTAT+TGG - Chr3:85808566-85808585 MsG0380016620.01.T01:intron 30.0%
AAAACAAGACACAATCCATG+TGG + Chr3:85808685-85808704 None:intergenic 35.0%
AAAGAGAATTGAGCTGAAAG+TGG + Chr3:85808029-85808048 None:intergenic 35.0%
AAGAACAGTTTGCATATGTG+GGG + Chr3:85809065-85809084 None:intergenic 35.0%
AATGAATCTCTGTGTAGGAT+AGG - Chr3:85810012-85810031 MsG0380016620.01.T01:intron 35.0%
AGGTTCAATCTTCCAATAGT+TGG + Chr3:85808581-85808600 None:intergenic 35.0%
AGTGAATGAATGTAACCACA+TGG - Chr3:85808667-85808686 MsG0380016620.01.T01:intron 35.0%
ATACTTGCCAAAGTTTGTCA+TGG + Chr3:85808798-85808817 None:intergenic 35.0%
ATCGTGATGTAAGCATTAAC+AGG + Chr3:85810325-85810344 None:intergenic 35.0%
ATCTCTCTGAATGTGAGTAA+CGG + Chr3:85809865-85809884 None:intergenic 35.0%
ATGACACCTTTGAATCTGAA+GGG + Chr3:85808056-85808075 None:intergenic 35.0%
CTTGTGCACGAGAATAAAAA+TGG - Chr3:85810563-85810582 MsG0380016620.01.T01:CDS 35.0%
GAAAGAACAGTTTGCATATG+TGG + Chr3:85809067-85809086 None:intergenic 35.0%
GAGATTCATATCAAACTAGG+AGG - Chr3:85809880-85809899 MsG0380016620.01.T01:intron 35.0%
GCTATAAGTAGAAGAAGGAA+AGG + Chr3:85809094-85809113 None:intergenic 35.0%
GCTTTCACTGTTTGTTTATC+TGG - Chr3:85808224-85808243 MsG0380016620.01.T01:intron 35.0%
GTTTGATGTCTGACATTTGT+TGG + Chr3:85808717-85808736 None:intergenic 35.0%
TAAACACTGGGTATACACAA+AGG - Chr3:85809232-85809251 MsG0380016620.01.T01:intron 35.0%
TAAACATTACCAGGTGGAAT+GGG + Chr3:85810362-85810381 None:intergenic 35.0%
TAGTGGCTATAAGTAGAAGA+AGG + Chr3:85809099-85809118 None:intergenic 35.0%
TATCCTACACAGAGATTCAT+TGG + Chr3:85810013-85810032 None:intergenic 35.0%
TCAAACCTTCATTCTCTGAA+GGG + Chr3:85809615-85809634 None:intergenic 35.0%
TCCTATAAAATAAGGCCAGA+GGG - Chr3:85810073-85810092 MsG0380016620.01.T01:intron 35.0%
TGACAAGTACAAGCATTTCA+GGG - Chr3:85809960-85809979 MsG0380016620.01.T01:intron 35.0%
TTCACTGTTTGTTTATCTGG+TGG - Chr3:85808227-85808246 MsG0380016620.01.T01:intron 35.0%
TTCCTATAAAATAAGGCCAG+AGG - Chr3:85810072-85810091 MsG0380016620.01.T01:intron 35.0%
TTGACAAGTACAAGCATTTC+AGG - Chr3:85809959-85809978 MsG0380016620.01.T01:intron 35.0%
TTGAGCCAATTTGTCAATCA+CGG - Chr3:85809631-85809650 MsG0380016620.01.T01:intron 35.0%
TTGATGAAAGAAGCAAAGAC+AGG + Chr3:85809342-85809361 None:intergenic 35.0%
TTGATTGCGTAAACATTACC+AGG + Chr3:85810371-85810390 None:intergenic 35.0%
TTGGACAGAGCACATTATAT+AGG - Chr3:85809542-85809561 MsG0380016620.01.T01:intron 35.0%
! AGAAATTTTCTCCAGAAAGC+TGG + Chr3:85809290-85809309 None:intergenic 35.0%
! TTTTATTCTCGTGCACAAGA+GGG + Chr3:85810562-85810581 None:intergenic 35.0%
! TTTTTATTCTCGTGCACAAG+AGG + Chr3:85810563-85810582 None:intergenic 35.0%
!! CGTATGTCGATTCTATTGAA+TGG - Chr3:85808380-85808399 MsG0380016620.01.T01:intron 35.0%
!!! TTTTGATGGGTTTCTATCCA+AGG - Chr3:85808477-85808496 MsG0380016620.01.T01:intron 35.0%
AAACCAGTGTTGTCAAACAG+CGG + Chr3:85809805-85809824 None:intergenic 40.0%
AATAAGTTCACTCGCGAAAG+AGG - Chr3:85808200-85808219 MsG0380016620.01.T01:intron 40.0%
AATCTCTGTGTAGGATAGGA+TGG - Chr3:85810016-85810035 MsG0380016620.01.T01:intron 40.0%
AGAGAGATCAGCGACATATT+TGG + Chr3:85808180-85808199 None:intergenic 40.0%
ATAACCTCATCATCAACCAG+TGG - Chr3:85810464-85810483 MsG0380016620.01.T01:CDS 40.0%
ATGAAAGAAGCAAAGACAGG+TGG + Chr3:85809339-85809358 None:intergenic 40.0%
ATGTAGCTTCTTTGTTCCCA+GGG - Chr3:85810534-85810553 MsG0380016620.01.T01:CDS 40.0%
ATTGCGTAAACATTACCAGG+TGG + Chr3:85810368-85810387 None:intergenic 40.0%
CAAGGTGGTGAAATCTTCAA+TGG - Chr3:85808106-85808125 MsG0380016620.01.T01:CDS 40.0%
CCTATAAAATAAGGCCAGAG+GGG - Chr3:85810074-85810093 MsG0380016620.01.T01:intron 40.0%
CTACACAGAGATTCATTGGT+CGG + Chr3:85810009-85810028 None:intergenic 40.0%
CTCAAACCTTCATTCTCTGA+AGG + Chr3:85809616-85809635 None:intergenic 40.0%
GAGAGAGAAAAGAAACTCAC+TGG + Chr3:85808271-85808290 None:intergenic 40.0%
GATGACACCTTTGAATCTGA+AGG + Chr3:85808057-85808076 None:intergenic 40.0%
GGTACTAAGTGTGGTTTGAA+GGG - Chr3:85808911-85808930 MsG0380016620.01.T01:intron 40.0%
GTAAACATTACCAGGTGGAA+TGG + Chr3:85810363-85810382 None:intergenic 40.0%
GTTGAGATGTAACCAAGAGT+GGG + Chr3:85807961-85807980 None:intergenic 40.0%
TATCACTCAACAAGGGATGT+AGG - Chr3:85808942-85808961 MsG0380016620.01.T01:intron 40.0%
TCGCCAAACACAACAACAAA+CGG - Chr3:85808075-85808094 MsG0380016620.01.T01:CDS 40.0%
TGCTCTGTCCAATTCCAAAA+TGG + Chr3:85809534-85809553 None:intergenic 40.0%
TGCTTACATCACGATTCTCT+TGG - Chr3:85810330-85810349 MsG0380016620.01.T01:CDS 40.0%
TGGTACTAAGTGTGGTTTGA+AGG - Chr3:85808910-85808929 MsG0380016620.01.T01:intron 40.0%
TGTTGAGATGTAACCAAGAG+TGG + Chr3:85807962-85807981 None:intergenic 40.0%
TTTCGACCCTTCAGATTCAA+AGG - Chr3:85808047-85808066 MsG0380016620.01.T01:CDS 40.0%
! ACGCAAGTTTGGGTTTGAAA+GGG + Chr3:85808006-85808025 None:intergenic 40.0%
! CCAGAGGGGAATGAATTTTA+GGG - Chr3:85810088-85810107 MsG0380016620.01.T01:CDS 40.0%
! GATCTCATGTTACTTGGCAT+GGG - Chr3:85810500-85810519 MsG0380016620.01.T01:CDS 40.0%
! GGCTAAATGGCATGTGTTTT+GGG - Chr3:85808402-85808421 MsG0380016620.01.T01:intron 40.0%
! TGATCTCATGTTACTTGGCA+TGG - Chr3:85810499-85810518 MsG0380016620.01.T01:CDS 40.0%
! TTTTGGTGAGTCGTTAATGG+AGG + Chr3:85810593-85810612 None:intergenic 40.0%
!! AAATCCACTGGTTGATGATG+AGG + Chr3:85810471-85810490 None:intergenic 40.0%
!! CATTTTGTTTGTGCAGCCTT+TGG - Chr3:85809186-85809205 MsG0380016620.01.T01:intron 40.0%
!! GAACCGTTTGTTGTTGTGTT+TGG + Chr3:85808081-85808100 None:intergenic 40.0%
!!! TGGTTTTGGTGAGTCGTTAA+TGG + Chr3:85810596-85810615 None:intergenic 40.0%
AAAGGGAAAGCGATGCGATT+CGG + Chr3:85807989-85808008 None:intergenic 45.0%
AAGTGACCTGCAAGATGTTG+AGG - Chr3:85809578-85809597 MsG0380016620.01.T01:intron 45.0%
AATGATGCCCTTTCAGCTGA+GGG - Chr3:85810389-85810408 MsG0380016620.01.T01:CDS 45.0%
AGTGACCTGCAAGATGTTGA+GGG - Chr3:85809579-85809598 MsG0380016620.01.T01:intron 45.0%
ATACCCAGTGTTTAAGCACC+AGG + Chr3:85809226-85809245 None:intergenic 45.0%
CAACAAACGGTTCGTTTGCA+AGG - Chr3:85808088-85808107 MsG0380016620.01.T01:CDS 45.0%
CATGTAGCTTCTTTGTTCCC+AGG - Chr3:85810533-85810552 MsG0380016620.01.T01:CDS 45.0%
CATTGGAAGACTCCACTTGT+GGG - Chr3:85809828-85809847 MsG0380016620.01.T01:intron 45.0%
CCCTAAAATTCATTCCCCTC+TGG + Chr3:85810091-85810110 None:intergenic 45.0%
CGACCAATGAATCTCTGTGT+AGG - Chr3:85810007-85810026 MsG0380016620.01.T01:intron 45.0%
CGAGACATGTGTCAAACACT+TGG - Chr3:85810427-85810446 MsG0380016620.01.T01:CDS 45.0%
CGAGGATCCATGACAAACTT+TGG - Chr3:85808788-85808807 MsG0380016620.01.T01:intron 45.0%
CTGAAACACACTTTCTAGGC+TGG + Chr3:85809039-85809058 None:intergenic 45.0%
CTGAAAGTGGACGCAAGTTT+GGG + Chr3:85808016-85808035 None:intergenic 45.0%
CTTCCTGGTGCTTAAACACT+GGG - Chr3:85809220-85809239 MsG0380016620.01.T01:intron 45.0%
GACACATGTCTCGTAATCGT+CGG + Chr3:85810420-85810439 None:intergenic 45.0%
GACATTTGTTTCGCAGTACC+TGG + Chr3:85809167-85809186 None:intergenic 45.0%
GCACCTGAAACACACTTTCT+AGG + Chr3:85809043-85809062 None:intergenic 45.0%
GCGATCCGTGATTGACAAAT+TGG + Chr3:85809639-85809658 None:intergenic 45.0%
GGAAGCCAAATCTTGACCAA+AGG + Chr3:85809205-85809224 None:intergenic 45.0%
GTAGAAACAGTCAGTATGCG+AGG - Chr3:85808770-85808789 MsG0380016620.01.T01:intron 45.0%
GTATGCCCTTCAGAGAATGA+AGG - Chr3:85809607-85809626 MsG0380016620.01.T01:intron 45.0%
TAACCAAGAGTGGGTGAAAG+TGG + Chr3:85807952-85807971 None:intergenic 45.0%
TACATCACGATTCTCTTGGC+AGG - Chr3:85810334-85810353 MsG0380016620.01.T01:CDS 45.0%
TGCAGCCTTTGGTCAAGATT+TGG - Chr3:85809197-85809216 MsG0380016620.01.T01:intron 45.0%
! ATTCTCTGAAGGGCATACCA+CGG + Chr3:85809605-85809624 None:intergenic 45.0%
! CAGCCTAGAAAGTGTGTTTC+AGG - Chr3:85809037-85809056 MsG0380016620.01.T01:intron 45.0%
! GACGCAAGTTTGGGTTTGAA+AGG + Chr3:85808007-85808026 None:intergenic 45.0%
! GCCAGAGGGGAATGAATTTT+AGG - Chr3:85810087-85810106 MsG0380016620.01.T01:CDS 45.0%
! GGGCTAAATGGCATGTGTTT+TGG - Chr3:85808401-85808420 MsG0380016620.01.T01:intron 45.0%
! TTGGTCAAGATTTGGCTTCC+TGG - Chr3:85809205-85809224 MsG0380016620.01.T01:intron 45.0%
!! ATGGTGGATGGTACTAAGTG+TGG - Chr3:85808902-85808921 MsG0380016620.01.T01:intron 45.0%
!! ATTCTGAAGCACCAGCTTTC+TGG - Chr3:85809276-85809295 MsG0380016620.01.T01:intron 45.0%
!! GACAACACTGGTTTGAGCAT+TGG - Chr3:85809811-85809830 MsG0380016620.01.T01:intron 45.0%
!!! ATTCTCTCTGGTGGTGGTTT+TGG + Chr3:85810610-85810629 None:intergenic 45.0%
!!! CCCCTCTGGCCTTATTTTAT+AGG + Chr3:85810077-85810096 None:intergenic 45.0%
AAAGAAGCTACATGCCCGTC+AGG + Chr3:85810527-85810546 None:intergenic 50.0%
AAGAAGCTACATGCCCGTCA+GGG + Chr3:85810526-85810545 None:intergenic 50.0%
AAGGGAAAGCGATGCGATTC+GGG + Chr3:85807988-85808007 None:intergenic 50.0%
ACACACTTTCTAGGCTGGAC+TGG + Chr3:85809034-85809053 None:intergenic 50.0%
ACACTTTCTAGGCTGGACTG+GGG + Chr3:85809032-85809051 None:intergenic 50.0%
ACTTATGGTGCTCAAGTGCC+AGG - Chr3:85809146-85809165 MsG0380016620.01.T01:intron 50.0%
AGGGATGTAGGTGGAAAGCA+TGG - Chr3:85808954-85808973 MsG0380016620.01.T01:intron 50.0%
CAAACGGTTCGTTTGCAAGG+TGG - Chr3:85808091-85808110 MsG0380016620.01.T01:CDS 50.0%
CAATGATGCCCTTTCAGCTG+AGG - Chr3:85810388-85810407 MsG0380016620.01.T01:CDS 50.0%
CACACTTTCTAGGCTGGACT+GGG + Chr3:85809033-85809052 None:intergenic 50.0%
CACTCAACAAGGGATGTAGG+TGG - Chr3:85808945-85808964 MsG0380016620.01.T01:intron 50.0%
CTTCCACTTTCACCCACTCT+TGG - Chr3:85807946-85807965 MsG0380016620.01.T01:CDS 50.0%
GCATTGGAAGACTCCACTTG+TGG - Chr3:85809827-85809846 MsG0380016620.01.T01:intron 50.0%
GCTGAAAGTGGACGCAAGTT+TGG + Chr3:85808017-85808036 None:intergenic 50.0%
GCTTCCTGGTGCTTAAACAC+TGG - Chr3:85809219-85809238 MsG0380016620.01.T01:intron 50.0%
TAGCCGCTGTTTGACAACAC+TGG - Chr3:85809799-85809818 MsG0380016620.01.T01:intron 50.0%
ACCGCGCTATAGTGACGCAA+TGG - Chr3:85809693-85809712 MsG0380016620.01.T01:intron 55.0%
AGGGAAAGCGATGCGATTCG+GGG + Chr3:85807987-85808006 None:intergenic 55.0%
GCCATTGCGTCACTATAGCG+CGG + Chr3:85809697-85809716 None:intergenic 55.0%
TTACTTGGCATGGGCCCTGA+CGG - Chr3:85810509-85810528 MsG0380016620.01.T01:CDS 55.0%
! AAGACTCCACTTGTGGGCTG+TGG - Chr3:85809834-85809853 MsG0380016620.01.T01:intron 55.0%
! GCTGGACTGGGGAAGCTTAT+AGG + Chr3:85809021-85809040 None:intergenic 55.0%
CACGGCCCTCAACATCTTGC+AGG + Chr3:85809587-85809606 None:intergenic 60.0%
CTGCAAGATGTTGAGGGCCG+TGG - Chr3:85809585-85809604 MsG0380016620.01.T01:intron 60.0%
GGCAGCTCCCTCAGCTGAAA+GGG + Chr3:85810399-85810418 None:intergenic 60.0%
GTTACGCCACAGCCCACAAG+TGG + Chr3:85809843-85809862 None:intergenic 60.0%
TACTTGGCATGGGCCCTGAC+GGG - Chr3:85810510-85810529 MsG0380016620.01.T01:CDS 60.0%
CGGCAGCTCCCTCAGCTGAA+AGG + Chr3:85810400-85810419 None:intergenic 65.0%
TGGCAGGTGCCCATTCCACC+TGG - Chr3:85810350-85810369 MsG0380016620.01.T01:CDS 65.0%
!! CGTGCACAAGAGGGTGCCCT+GGG + Chr3:85810553-85810572 None:intergenic 65.0%
!! TCGTGCACAAGAGGGTGCCC+TGG + Chr3:85810554-85810573 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85807942 85810631 85807942 ID=MsG0380016620.01;Name=MsG0380016620.01
Chr3 mRNA 85807942 85810631 85807942 ID=MsG0380016620.01.T01;Parent=MsG0380016620.01;Name=MsG0380016620.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0|0|1|1|1|3|0|246
Chr3 exon 85810303 85810631 85810303 ID=MsG0380016620.01.T01:exon:21942;Parent=MsG0380016620.01.T01
Chr3 exon 85810075 85810210 85810075 ID=MsG0380016620.01.T01:exon:21941;Parent=MsG0380016620.01.T01
Chr3 exon 85807942 85808217 85807942 ID=MsG0380016620.01.T01:exon:21940;Parent=MsG0380016620.01.T01
Chr3 CDS 85810303 85810631 85810303 ID=MsG0380016620.01.T01:cds;Parent=MsG0380016620.01.T01
Chr3 CDS 85810075 85810210 85810075 ID=MsG0380016620.01.T01:cds;Parent=MsG0380016620.01.T01
Chr3 CDS 85807942 85808217 85807942 ID=MsG0380016620.01.T01:cds;Parent=MsG0380016620.01.T01
Gene Sequence

>MsG0380016620.01.T01

ATGTCTTCCACTTTCACCCACTCTTGGTTACATCTCAACACTCCCCGAATCGCATCGCTTTCCCTTTCAAACCCAAACTTGCGTCCACTTTCAGCTCAATTCTCTTTTCGACCCTTCAGATTCAAAGGTGTCATCGCCAAACACAACAACAAACGGTTCGTTTGCAAGGTGGTGAAATCTTCAATGGCTGTTGAAGTTGAAGTCTTCGAAAAAGAACAACTCGCTGTTTCTCTCGCCAAATATGTCGCTGATCTCTCTAATAAGTTCACTCGCGAAAGAGGCGCTTTCACTGTTTGTTTATCTGGTGGCTCTTTGATCAACTATCTCCAGAAACTGTTGGAAGATCCGTATGTCGATTCTATTGAATGGGCTAAATGGCATGTGTTTTGGGTTGATGAGAGAGTTGTACCAAAGACTCATGATGATAGTAACTATAAGCTTGCTTTTGATGGGTTTCTATCCAAGGTGCCCATTCCACCTGGTAATGTTTACGCAATCAATGATGCCCTTTCAGCTGAGGGAGCTGCCGACGATTACGAGACATGTGTCAAACACTTGGTCAATAGCAATGTGATAACCTCATCATCAACCAGTGGATTTCCAAAATTTGATCTCATGTTACTTGGCATGGGCCCTGACGGGCATGTAGCTTCTTTGTTCCCAGGGCACCCTCTTGTGCACGAGAATAAAAATGGGTTACCTCCATTAACGACTCACCAAAACCACCACCAGAGAGAATAA
Protein sequence

>MsG0380016620.01.T01

MSSTFTHSWLHLNTPRIASLSLSNPNLRPLSAQFSFRPFRFKGVIAKHNNKRFVCKVVKSSMAVEVEVFEKEQLAVSLAKYVADLSNKFTRERGAFTVCLSGGSLINYLQKLLEDPYVDSIEWAKWHVFWVDERVVPKTHDDSNYKLAFDGFLSKVPIPPGNVYAINDALSAEGAADDYETCVKHLVNSNVITSSSTSGFPKFDLMLLGMGPDGHVASLFPGHPLVHENKNGLPPLTTHQNHHQRE*