Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005906.01.T01 | XP_013470121.1 | 98.21 | 391 | 3 | 1 | 1 | 387 | 1 | 391 | 0 | 782 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005906.01.T01 | Q9ZU52 | 84.655 | 391 | 56 | 2 | 1 | 387 | 1 | 391 | 0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005906.01.T01 | A0A072VQ58 | 98.210 | 391 | 3 | 1 | 1 | 387 | 1 | 391 | 0.0 | 782 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0180005906.01 | 0.821423 | 4.070171e-53 | 3.309996e-50 |
| MsG0080048507.01 | MsG0180005906.01 | 0.800275 | 1.555433e-48 | 7.212663e-46 |
| MsG0080049045.01 | MsG0180005906.01 | 0.807297 | 5.415356e-50 | 3.005264e-47 |
| MsG0180001029.01 | MsG0180005906.01 | 0.804103 | 2.536241e-49 | 1.296508e-46 |
| MsG0180003320.01 | MsG0180005906.01 | 0.823745 | 1.173965e-53 | 1.019758e-50 |
| MsG0180003375.01 | MsG0180005906.01 | 0.801345 | 9.405817e-49 | 4.481430e-46 |
| MsG0180003404.01 | MsG0180005906.01 | 0.825263 | 5.156612e-54 | 4.676924e-51 |
| MsG0180003505.01 | MsG0180005906.01 | 0.804527 | 2.069420e-49 | 1.069422e-46 |
| MsG0180003637.01 | MsG0180005906.01 | 0.849990 | 2.267577e-60 | 4.376949e-57 |
| MsG0180004792.01 | MsG0180005906.01 | -0.801964 | 7.021903e-49 | 3.398232e-46 |
| MsG0180005146.01 | MsG0180005906.01 | 0.801541 | 8.575346e-49 | 4.105936e-46 |
| MsG0180005906.01 | MsG0180006253.01 | 0.812303 | 4.537030e-51 | 2.874295e-48 |
| MsG0180005906.01 | MsG0280006316.01 | 0.819077 | 1.403217e-52 | 1.069038e-49 |
| MsG0180005906.01 | MsG0280006575.01 | 0.831084 | 2.039997e-55 | 2.190651e-52 |
| MsG0180005906.01 | MsG0280006579.01 | 0.852367 | 4.836246e-61 | 1.008294e-57 |
| MsG0180005906.01 | MsG0280007280.01 | 0.816580 | 5.138891e-52 | 3.655491e-49 |
| MsG0180005906.01 | MsG0280007677.01 | 0.813562 | 2.403686e-51 | 1.574979e-48 |
| MsG0180005906.01 | MsG0280007851.01 | 0.803183 | 3.935943e-49 | 1.965002e-46 |
| MsG0180005906.01 | MsG0280007853.01 | -0.801206 | 1.004284e-48 | 4.768136e-46 |
| MsG0180005906.01 | MsG0280008452.01 | 0.852830 | 3.568330e-61 | 7.553704e-58 |
| MsG0180005906.01 | MsG0280009526.01 | 0.844966 | 5.448741e-59 | 8.944306e-56 |
| MsG0180005906.01 | MsG0280009657.01 | 0.801114 | 1.048969e-48 | 4.968842e-46 |
| MsG0180005906.01 | MsG0280010425.01 | 0.812084 | 5.064665e-51 | 3.189587e-48 |
| MsG0180005906.01 | MsG0380012222.01 | 0.804744 | 1.865065e-49 | 9.693302e-47 |
| MsG0180005906.01 | MsG0380013843.01 | 0.881913 | 1.615700e-70 | 9.643103e-67 |
| MsG0180005906.01 | MsG0380015659.01 | 0.802992 | 4.311684e-49 | 2.141988e-46 |
| MsG0180005906.01 | MsG0380015660.01 | 0.806502 | 7.974604e-50 | 4.335416e-47 |
| MsG0180005906.01 | MsG0380015711.01 | 0.810148 | 1.331209e-50 | 7.963340e-48 |
| MsG0180005906.01 | MsG0380016490.01 | 0.816281 | 5.994974e-52 | 4.229998e-49 |
| MsG0180005906.01 | MsG0380016620.01 | 0.806938 | 6.450908e-50 | 3.546608e-47 |
| MsG0180005906.01 | MsG0380017168.01 | 0.818643 | 1.761123e-52 | 1.325684e-49 |
| MsG0180005906.01 | MsG0380017411.01 | 0.801120 | 1.045780e-48 | 4.954557e-46 |
| MsG0180005906.01 | MsG0380017594.01 | 0.816764 | 4.673586e-52 | 3.341314e-49 |
| MsG0180005906.01 | MsG0380017901.01 | 0.837852 | 4.070869e-57 | 5.356177e-54 |
| MsG0180005906.01 | MsG0480018337.01 | -0.819286 | 1.257593e-52 | 9.636204e-50 |
| MsG0180005906.01 | MsG0480019171.01 | 0.836920 | 7.049937e-57 | 9.013927e-54 |
| MsG0180005906.01 | MsG0480019348.01 | 0.812626 | 3.857213e-51 | 2.464643e-48 |
| MsG0180005906.01 | MsG0480020473.01 | -0.815859 | 7.450654e-52 | 5.196165e-49 |
| MsG0180005906.01 | MsG0480020595.01 | 0.814297 | 1.655371e-51 | 1.106530e-48 |
| MsG0180005906.01 | MsG0480021300.01 | 0.814715 | 1.337798e-51 | 9.043900e-49 |
| MsG0180005906.01 | MsG0480021360.01 | 0.800604 | 1.333289e-48 | 6.234299e-46 |
| MsG0180005906.01 | MsG0480021967.01 | -0.813658 | 2.289338e-51 | 1.503989e-48 |
| MsG0180005906.01 | MsG0480023466.01 | -0.800720 | 1.262745e-48 | 5.921629e-46 |
| MsG0180005906.01 | MsG0480023851.01 | -0.828794 | 7.375657e-55 | 7.406878e-52 |
| MsG0180005906.01 | MsG0580024087.01 | 0.808939 | 2.420072e-50 | 1.402017e-47 |
| MsG0180005906.01 | MsG0580024649.01 | 0.812896 | 3.365392e-51 | 2.165726e-48 |
| MsG0180005906.01 | MsG0580024994.01 | 0.802103 | 6.576191e-49 | 3.193864e-46 |
| MsG0180005906.01 | MsG0580025007.01 | 0.818594 | 1.807185e-52 | 1.358512e-49 |
| MsG0180005906.01 | MsG0580025024.01 | 0.811879 | 5.614182e-51 | 3.515904e-48 |
| MsG0180005906.01 | MsG0580025140.01 | 0.811687 | 6.179863e-51 | 3.850446e-48 |
| MsG0180005906.01 | MsG0580025432.01 | 0.806725 | 7.156405e-50 | 3.912923e-47 |
| MsG0180005906.01 | MsG0580025960.01 | 0.807110 | 5.931248e-50 | 3.275417e-47 |
| MsG0180005906.01 | MsG0580026521.01 | 0.827560 | 1.462686e-54 | 1.417005e-51 |
| MsG0180005906.01 | MsG0580027751.01 | 0.818873 | 1.561927e-52 | 1.183326e-49 |
| MsG0180005906.01 | MsG0580028302.01 | 0.806955 | 6.395751e-50 | 3.517882e-47 |
| MsG0180005906.01 | MsG0580028337.01 | 0.822880 | 1.869349e-53 | 1.584436e-50 |
| MsG0180005906.01 | MsG0580029676.01 | 0.801843 | 7.436408e-49 | 3.588018e-46 |
| MsG0180005906.01 | MsG0580029713.01 | 0.835796 | 1.362212e-56 | 1.683695e-53 |
| MsG0180005906.01 | MsG0580029937.01 | 0.814687 | 1.357221e-51 | 9.168076e-49 |
| MsG0180005906.01 | MsG0580029938.01 | 0.814504 | 1.489671e-51 | 1.001415e-48 |
| MsG0180005906.01 | MsG0680030296.01 | 0.802556 | 5.304820e-49 | 2.606275e-46 |
| MsG0180005906.01 | MsG0680031200.01 | 0.816105 | 6.564567e-52 | 4.609446e-49 |
| MsG0180005906.01 | MsG0680031852.01 | 0.803398 | 3.553979e-49 | 1.784119e-46 |
| MsG0180005906.01 | MsG0680032932.01 | 0.821923 | 3.118840e-53 | 2.572386e-50 |
| MsG0180005906.01 | MsG0680034238.01 | 0.809940 | 1.475712e-50 | 8.780171e-48 |
| MsG0180005906.01 | MsG0680034759.01 | 0.802662 | 5.044138e-49 | 2.484912e-46 |
| MsG0180005906.01 | MsG0680034978.01 | 0.804359 | 2.244134e-49 | 1.154737e-46 |
| MsG0180005906.01 | MsG0780036259.01 | 0.811435 | 7.011407e-51 | 4.339885e-48 |
| MsG0180005906.01 | MsG0780036481.01 | 0.836482 | 9.118432e-57 | 1.150619e-53 |
| MsG0180005906.01 | MsG0780036839.01 | 0.811917 | 5.509062e-51 | 3.453482e-48 |
| MsG0180005906.01 | MsG0780039373.01 | 0.809879 | 1.521017e-50 | 9.035327e-48 |
| MsG0180005906.01 | MsG0780039883.01 | 0.808438 | 3.096972e-50 | 1.770859e-47 |
| MsG0180005906.01 | MsG0780040497.01 | 0.807472 | 4.971756e-50 | 2.771714e-47 |
| MsG0180005906.01 | MsG0780040670.01 | 0.805461 | 1.320457e-49 | 6.990109e-47 |
| MsG0180005906.01 | MsG0780040684.01 | -0.817551 | 3.110134e-52 | 2.271960e-49 |
| MsG0180005906.01 | MsG0780040716.01 | 0.825690 | 4.085272e-54 | 3.750603e-51 |
| MsG0180005906.01 | MsG0780040847.01 | 0.810253 | 1.263790e-50 | 7.580865e-48 |
| MsG0180005906.01 | MsG0880041847.01 | -0.810454 | 1.143379e-50 | 6.894853e-48 |
| MsG0180005906.01 | MsG0880042554.01 | 0.813806 | 2.124528e-51 | 1.401335e-48 |
| MsG0180005906.01 | MsG0880042633.01 | 0.820434 | 6.872866e-53 | 5.437691e-50 |
| MsG0180005906.01 | MsG0880043212.01 | 0.802109 | 6.558169e-49 | 3.185624e-46 |
| MsG0180005906.01 | MsG0880043495.01 | 0.819414 | 1.176106e-52 | 9.044350e-50 |
| MsG0180005906.01 | MsG0880045801.01 | 0.807935 | 3.963092e-50 | 2.236139e-47 |
| MsG0180005906.01 | MsG0880045854.01 | 0.829222 | 5.808107e-55 | 5.907434e-52 |
| MsG0180005906.01 | MsG0880046870.01 | 0.831212 | 1.897547e-55 | 2.045319e-52 |
| MsG0180005906.01 | MsG0880046923.01 | 0.802578 | 5.250402e-49 | 2.581001e-46 |
| MsG0180005906.01 | MsG0880046946.01 | 0.813808 | 2.121816e-51 | 1.399652e-48 |
| MsG0180005906.01 | MsG0880047312.01 | 0.801153 | 1.029959e-48 | 4.883611e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180005906.01 | MsG0480021327.01 | PPI |
| MsG0180005906.01 | MsG0480021327.01 | PPI |
| MsG0180005906.01 | MsG0480021331.01 | PPI |
| MsG0180005906.01 | MsG0480021327.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005906.01.T01 | MTR_1g109200 | 98.210 | 391 | 3 | 1 | 1 | 387 | 1 | 391 | 0.0 | 782 |
| MsG0180005906.01.T01 | MTR_4g071860 | 81.972 | 355 | 63 | 1 | 34 | 387 | 46 | 400 | 0.0 | 608 |
| MsG0180005906.01.T01 | MTR_4g057670 | 81.690 | 355 | 64 | 1 | 34 | 387 | 46 | 400 | 0.0 | 607 |
| MsG0180005906.01.T01 | MTR_4g071880 | 75.843 | 356 | 73 | 3 | 33 | 387 | 43 | 386 | 0.0 | 544 |
| MsG0180005906.01.T01 | MTR_5g069055 | 54.494 | 356 | 157 | 4 | 36 | 387 | 4 | 358 | 1.87e-134 | 389 |
| MsG0180005906.01.T01 | MTR_5g096670 | 55.271 | 351 | 153 | 3 | 40 | 387 | 8 | 357 | 7.06e-134 | 387 |
| MsG0180005906.01.T01 | MTR_1g061050 | 53.090 | 356 | 162 | 4 | 36 | 387 | 4 | 358 | 2.00e-129 | 376 |
| MsG0180005906.01.T01 | MTR_5g069050 | 53.143 | 350 | 144 | 5 | 42 | 387 | 51 | 384 | 5.80e-123 | 360 |
| MsG0180005906.01.T01 | MTR_7g103920 | 47.253 | 91 | 24 | 1 | 145 | 235 | 12 | 78 | 5.14e-20 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005906.01.T01 | AT2G01140 | 84.655 | 391 | 56 | 2 | 1 | 387 | 1 | 391 | 0.0 | 675 |
| MsG0180005906.01.T01 | AT4G38970 | 77.546 | 383 | 80 | 2 | 11 | 387 | 16 | 398 | 0.0 | 615 |
| MsG0180005906.01.T01 | AT2G21330 | 74.872 | 390 | 91 | 3 | 5 | 387 | 10 | 399 | 0.0 | 601 |
| MsG0180005906.01.T01 | AT2G21330 | 72.308 | 390 | 91 | 4 | 5 | 387 | 10 | 389 | 0.0 | 573 |
| MsG0180005906.01.T01 | AT4G38970 | 72.403 | 308 | 72 | 3 | 11 | 305 | 16 | 323 | 2.04e-160 | 456 |
| MsG0180005906.01.T01 | AT2G21330 | 72.819 | 298 | 74 | 3 | 5 | 295 | 10 | 307 | 7.33e-158 | 446 |
| MsG0180005906.01.T01 | AT4G26530 | 56.250 | 352 | 149 | 4 | 40 | 387 | 8 | 358 | 2.03e-136 | 394 |
| MsG0180005906.01.T01 | AT4G26530 | 56.250 | 352 | 149 | 4 | 40 | 387 | 8 | 358 | 2.03e-136 | 394 |
| MsG0180005906.01.T01 | AT4G26530 | 56.250 | 352 | 149 | 4 | 40 | 387 | 8 | 358 | 2.03e-136 | 394 |
| MsG0180005906.01.T01 | AT2G36460 | 55.367 | 354 | 153 | 4 | 38 | 387 | 6 | 358 | 9.22e-135 | 390 |
| MsG0180005906.01.T01 | AT3G52930 | 54.520 | 354 | 156 | 4 | 38 | 387 | 6 | 358 | 1.00e-132 | 384 |
| MsG0180005906.01.T01 | AT5G03690 | 54.494 | 356 | 158 | 3 | 36 | 387 | 4 | 359 | 5.75e-132 | 382 |
| MsG0180005906.01.T01 | AT4G26520 | 54.520 | 354 | 156 | 4 | 38 | 387 | 6 | 358 | 3.53e-129 | 375 |
| MsG0180005906.01.T01 | AT4G26520 | 54.885 | 348 | 153 | 3 | 38 | 382 | 6 | 352 | 5.01e-129 | 375 |
| MsG0180005906.01.T01 | AT5G03690 | 55.301 | 349 | 152 | 3 | 43 | 387 | 45 | 393 | 7.25e-129 | 376 |
| MsG0180005906.01.T01 | AT4G26520 | 54.986 | 351 | 153 | 4 | 41 | 387 | 6 | 355 | 9.39e-129 | 374 |
| MsG0180005906.01.T01 | AT4G26520 | 54.986 | 351 | 153 | 4 | 41 | 387 | 6 | 355 | 9.39e-129 | 374 |
| MsG0180005906.01.T01 | AT2G36460 | 55.805 | 267 | 113 | 4 | 125 | 387 | 2 | 267 | 6.40e-99 | 295 |
| MsG0180005906.01.T01 | AT2G36460 | 55.805 | 267 | 113 | 4 | 125 | 387 | 2 | 267 | 6.40e-99 | 295 |
| MsG0180005906.01.T01 | AT5G03690 | 54.682 | 267 | 117 | 3 | 125 | 387 | 1 | 267 | 2.95e-94 | 283 |
| MsG0180005906.01.T01 | AT5G03690 | 54.682 | 267 | 117 | 3 | 125 | 387 | 1 | 267 | 2.95e-94 | 283 |
Find 135 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTATATTTGGCAATGGTTTC+TGG | 0.143267 | 1:+97379864 | None:intergenic |
| TCTTGGTGTAATAGAGGTTT+TGG | 0.189042 | 1:-97378853 | MsG0180005906.01.T01:three_prime_UTR |
| AAGCATGGTTAGTGTATATT+TGG | 0.209752 | 1:+97379851 | None:intergenic |
| CTTGACGAACATTTCCTTCT+TGG | 0.217385 | 1:+97379058 | None:intergenic |
| GGCTGTTAAGGAAGCGGCCT+GGG | 0.275057 | 1:-97380611 | MsG0180005906.01.T01:CDS |
| ACTTCCAGTGTCCTTTCAAT+TGG | 0.291399 | 1:+97380008 | None:intergenic |
| TCCCCATCAAGAAGAATTTC+AGG | 0.298792 | 1:+97380035 | None:intergenic |
| TGAGCTGCTTCAACATTCTC+AGG | 0.308014 | 1:+97379161 | None:intergenic |
| AGGTTAATCGCCAGGCTTAC+AGG | 0.321017 | 1:-97381392 | MsG0180005906.01.T01:CDS |
| AGAATTTCAGGCTCAACTAT+TGG | 0.323620 | 1:+97380047 | None:intergenic |
| TCCTTCTGCCTTGGCTGTTA+AGG | 0.340996 | 1:-97380623 | MsG0180005906.01.T01:CDS |
| CGTGCCATGGGTTGGGACTT+TGG | 0.343951 | 1:+97379243 | None:intergenic |
| GAGGTGTCTCTTGTGGCTTT+TGG | 0.347388 | 1:-97379015 | MsG0180005906.01.T01:three_prime_UTR |
| CGGTAACGGTACCATGATTC+CGG | 0.350799 | 1:+97379803 | None:intergenic |
| TAGGGTTTGGTTCCTCTACC+AGG | 0.359285 | 1:-97380858 | MsG0180005906.01.T01:CDS |
| AGCAGCTCAAAAGTCTCTTT+TGG | 0.359867 | 1:-97379147 | MsG0180005906.01.T01:CDS |
| CTTCCAGTGTCCTTTCAATT+GGG | 0.368440 | 1:+97380009 | None:intergenic |
| GGGAAGCGTTTGGCATCAAT+TGG | 0.374360 | 1:-97381429 | MsG0180005906.01.T01:CDS |
| TGAGCAAAATTCCCTCAAAA+AGG | 0.378619 | 1:+97379934 | None:intergenic |
| TCCAAGTGGTCCTTCTGCCT+TGG | 0.383226 | 1:-97380632 | MsG0180005906.01.T01:CDS |
| CTTTCTTTGTGCTCAGCACC+AGG | 0.384320 | 1:+97379894 | None:intergenic |
| GAGCCTGAAATTCTTCTTGA+TGG | 0.387798 | 1:-97380038 | MsG0180005906.01.T01:CDS |
| TAGCAATCATGATATGTAAC+TGG | 0.393007 | 1:+97378752 | None:intergenic |
| TCTTAAGCACGGTGTTCTGC+AGG | 0.420043 | 1:+97379198 | None:intergenic |
| CATCAGTTGTCGATTGGTAA+AGG | 0.422192 | 1:+97381304 | None:intergenic |
| ATCAGTTGTCGATTGGTAAA+GGG | 0.422744 | 1:+97381305 | None:intergenic |
| GTGCCAAGGTTTGGATGGAT+TGG | 0.426272 | 1:-97380817 | MsG0180005906.01.T01:CDS |
| TGAATCTTGGTGCCAAGGTT+TGG | 0.428814 | 1:-97380826 | MsG0180005906.01.T01:CDS |
| TATTAAGTCTCCCAACATAA+GGG | 0.432202 | 1:+97378789 | None:intergenic |
| TGCAACCGCTGGGAAGCGTT+TGG | 0.446908 | 1:-97381439 | MsG0180005906.01.T01:CDS |
| CTGAGCCAAGGAGTTAGCTT+TGG | 0.448199 | 1:+97379118 | None:intergenic |
| AGCCTGAAATTCTTCTTGAT+GGG | 0.449367 | 1:-97380037 | MsG0180005906.01.T01:CDS |
| GTCAGGTGGACAATCAGAAA+TGG | 0.452090 | 1:-97379294 | MsG0180005906.01.T01:CDS |
| ACCTTGTCAACTTTGATGCC+AGG | 0.456026 | 1:+97381240 | None:intergenic |
| TGGCTGTTAAGGAAGCGGCC+TGG | 0.457338 | 1:-97380612 | MsG0180005906.01.T01:CDS |
| ACCATGATTCCGGGGACTGC+AGG | 0.458254 | 1:+97379813 | None:intergenic |
| AAAGACACGTGCCATGGGTT+GGG | 0.469437 | 1:+97379236 | None:intergenic |
| GTATTAAGTCTCCCAACATA+AGG | 0.470893 | 1:+97378788 | None:intergenic |
| GCGTTTGGCATCAATTGGAT+TGG | 0.476960 | 1:-97381424 | MsG0180005906.01.T01:CDS |
| CCAGTGTCCTTTCAATTGGG+TGG | 0.480272 | 1:+97380012 | None:intergenic |
| GACTTCGGACCATACCTTCT+CGG | 0.480537 | 1:+97379983 | None:intergenic |
| CTGGTGCTGAGCACAAAGAA+AGG | 0.481067 | 1:-97379893 | MsG0180005906.01.T01:CDS |
| AAGGGTTGTTAGCGATCCAT+TGG | 0.483515 | 1:+97381924 | None:intergenic |
| GCAAAAGTTGCCTGTAAGCC+TGG | 0.485518 | 1:+97381382 | None:intergenic |
| TTGCTCACCACACCCGGTCT+AGG | 0.485709 | 1:-97381363 | MsG0180005906.01.T01:CDS |
| GATGAATCAAATGCAACCGC+TGG | 0.489723 | 1:-97381450 | MsG0180005906.01.T01:CDS |
| TCCTGCAGTCCCCGGAATCA+TGG | 0.494010 | 1:-97379814 | MsG0180005906.01.T01:intron |
| CAGGGTCAAACAATGAATCT+TGG | 0.494941 | 1:-97380839 | MsG0180005906.01.T01:CDS |
| TGGAAGTTGCCGAGAAGGTA+TGG | 0.496479 | 1:-97379992 | MsG0180005906.01.T01:CDS |
| TCTGTTGCATCTCGTGGTCG+TGG | 0.498134 | 1:-97381486 | MsG0180005906.01.T01:CDS |
| TCATTGTTTGACCCTGGTAG+AGG | 0.501439 | 1:+97380846 | None:intergenic |
| CTTTACCAATCGACAACTGA+TGG | 0.504053 | 1:-97381303 | MsG0180005906.01.T01:CDS |
| AACAATGAATCTTGGTGCCA+AGG | 0.506764 | 1:-97380831 | MsG0180005906.01.T01:CDS |
| AGAAGTTGAGGTGTCTCTTG+TGG | 0.510767 | 1:-97379022 | MsG0180005906.01.T01:three_prime_UTR |
| AGAGATGTATTCACCTAGAC+CGG | 0.511873 | 1:+97381350 | None:intergenic |
| TCTTCCCATCAGTTGTCGAT+TGG | 0.513936 | 1:+97381298 | None:intergenic |
| TATGTTGGGAGACTTAATAC+TGG | 0.515330 | 1:-97378785 | MsG0180005906.01.T01:three_prime_UTR |
| GAGACACCTCAACTTCTAGT+AGG | 0.519596 | 1:+97379028 | None:intergenic |
| GGTAACGGTACCATGATTCC+GGG | 0.519907 | 1:+97379804 | None:intergenic |
| CCACCACGGCGAGAAGAGAA+AGG | 0.520460 | 1:+97381905 | None:intergenic |
| GCTAACTCCTTGGCTCAGCT+TGG | 0.521549 | 1:-97379113 | MsG0180005906.01.T01:CDS |
| ACGATATGCTGCTATCTCTC+AGG | 0.522411 | 1:-97380581 | MsG0180005906.01.T01:intron |
| CCGTGCCAAAGCTAACTCCT+TGG | 0.523174 | 1:-97379123 | MsG0180005906.01.T01:CDS |
| TCTTGGTGCCAAGGTTTGGA+TGG | 0.523779 | 1:-97380822 | MsG0180005906.01.T01:CDS |
| AACTGATGGGAAGAAGTTTG+TGG | 0.525618 | 1:-97381289 | MsG0180005906.01.T01:CDS |
| TGCCTTGGCTGTTAAGGAAG+CGG | 0.526397 | 1:-97380617 | MsG0180005906.01.T01:CDS |
| GGTTAGTGTATATTTGGCAA+TGG | 0.529594 | 1:+97379857 | None:intergenic |
| CAATACTGAGGTTAATCGCC+AGG | 0.530082 | 1:-97381400 | MsG0180005906.01.T01:CDS |
| ATTAAGTCTCCCAACATAAG+GGG | 0.532723 | 1:+97378790 | None:intergenic |
| AGCATATCGTGCAAGTCCCC+AGG | 0.533205 | 1:+97380594 | None:intergenic |
| CGAAAATGAAGAAGCCAAGA+AGG | 0.534786 | 1:-97379072 | MsG0180005906.01.T01:CDS |
| GAGCTGCTTCAACATTCTCA+GGG | 0.535757 | 1:+97379162 | None:intergenic |
| AGGGTTGTTAGCGATCCATT+GGG | 0.536120 | 1:+97381925 | None:intergenic |
| TGGTGCTGAGCACAAAGAAA+GGG | 0.536459 | 1:-97379892 | MsG0180005906.01.T01:CDS |
| GCACCAGGTGTAACCATGCT+AGG | 0.538660 | 1:+97379909 | None:intergenic |
| GAAAGACACGTGCCATGGGT+TGG | 0.541533 | 1:+97379235 | None:intergenic |
| GGTCTAGGTGAATACATCTC+TGG | 0.541967 | 1:-97381348 | MsG0180005906.01.T01:CDS |
| GCCTGAAATTCTTCTTGATG+GGG | 0.544178 | 1:-97380036 | MsG0180005906.01.T01:CDS |
| GCCAAGGCAGAAGGACCACT+TGG | 0.544206 | 1:+97380631 | None:intergenic |
| AGAGTTCCTCCTGCAGTCCC+CGG | 0.546179 | 1:-97379822 | MsG0180005906.01.T01:CDS |
| GACACTGGAAGTTGCCGAGA+AGG | 0.547027 | 1:-97379997 | MsG0180005906.01.T01:CDS |
| GGCCGCTTCCTTAACAGCCA+AGG | 0.548119 | 1:+97380615 | None:intergenic |
| CGTGAGGAGAACATTGTACC+TGG | 0.549941 | 1:-97381258 | MsG0180005906.01.T01:CDS |
| CCTTTCTCTTCTCGCCGTGG+TGG | 0.550506 | 1:-97381905 | MsG0180005906.01.T01:CDS |
| ATGGGGACCACCCAATTGAA+AGG | 0.554643 | 1:-97380019 | MsG0180005906.01.T01:CDS |
| AAGAGAGACGTTGCGAGTGG+AGG | 0.555621 | 1:+97381877 | None:intergenic |
| AGGGTTTGGTTCCTCTACCA+GGG | 0.568089 | 1:-97380857 | MsG0180005906.01.T01:CDS |
| GTATTCACCTAGACCGGGTG+TGG | 0.569507 | 1:+97381356 | None:intergenic |
| GTATCTTCCAAGCTGAGCCA+AGG | 0.572003 | 1:+97379106 | None:intergenic |
| AGCGGTTTGAACAAGTTCAT+CGG | 0.573532 | 1:+97381835 | None:intergenic |
| TCCTTAACAGCCAAGGCAGA+AGG | 0.573737 | 1:+97380622 | None:intergenic |
| TCGGAGTAAGAAGCGCGGAT+CGG | 0.575235 | 1:+97381854 | None:intergenic |
| TCAACTCTCTCTCTTCCCAA+TGG | 0.579450 | 1:-97381940 | MsG0180005906.01.T01:CDS |
| TGTGTTCCATTGCAGGACAA+CGG | 0.583080 | 1:-97380077 | MsG0180005906.01.T01:intron |
| TATGAGAAAGACACGTGCCA+TGG | 0.584679 | 1:+97379230 | None:intergenic |
| AGGAACTCTTCTGTTAAGCA+TGG | 0.585388 | 1:+97379836 | None:intergenic |
| ATGAGAAAGACACGTGCCAT+GGG | 0.586561 | 1:+97379231 | None:intergenic |
| TAGAAATCTGTTGCATCTCG+TGG | 0.588123 | 1:-97381492 | MsG0180005906.01.T01:CDS |
| CAGGCTCAACTATTGGAACA+AGG | 0.589394 | 1:+97380054 | None:intergenic |
| CACCACGGCGAGAAGAGAAA+GGG | 0.589844 | 1:+97381906 | None:intergenic |
| CAAGATTCATTGTTTGACCC+TGG | 0.591933 | 1:+97380840 | None:intergenic |
| AAGCCAATCCATCCAAACCT+TGG | 0.594762 | 1:+97380814 | None:intergenic |
| ATGAATCAAATGCAACCGCT+GGG | 0.595807 | 1:-97381449 | MsG0180005906.01.T01:CDS |
| CTTAAGCACGGTGTTCTGCA+GGG | 0.596190 | 1:+97379199 | None:intergenic |
| ACTATACCTACTAGAAGTTG+AGG | 0.596744 | 1:-97379034 | MsG0180005906.01.T01:exon |
| AACCCTTTCTCTTCTCGCCG+TGG | 0.600461 | 1:-97381908 | MsG0180005906.01.T01:CDS |
| GCTGTTAAGGAAGCGGCCTG+GGG | 0.602168 | 1:-97380610 | MsG0180005906.01.T01:CDS |
| AAGCCTAGCATGGTTACACC+TGG | 0.607681 | 1:-97379912 | MsG0180005906.01.T01:CDS |
| CCAAGGAGTTAGCTTTGGCA+CGG | 0.608922 | 1:+97379123 | None:intergenic |
| ACCGTGCTTAAGACATGGCA+AGG | 0.609667 | 1:-97379188 | MsG0180005906.01.T01:CDS |
| ACCTTGCCATGTCTTAAGCA+CGG | 0.614625 | 1:+97379187 | None:intergenic |
| CGGAAGAGAGACGTTGCGAG+TGG | 0.615100 | 1:+97381874 | None:intergenic |
| TTTACCAATCGACAACTGAT+GGG | 0.617461 | 1:-97381302 | MsG0180005906.01.T01:CDS |
| CCACCCAATTGAAAGGACAC+TGG | 0.623497 | 1:-97380012 | MsG0180005906.01.T01:CDS |
| CAGGTACAATGTTCTCCTCA+CGG | 0.624895 | 1:+97381259 | None:intergenic |
| CTTGGAAGATACTCTGCCGA+GGG | 0.626594 | 1:-97379095 | MsG0180005906.01.T01:CDS |
| CAAGAAGGAAATGTTCGTCA+AGG | 0.630500 | 1:-97379057 | MsG0180005906.01.T01:CDS |
| ATGATTCCGGGGACTGCAGG+AGG | 0.636274 | 1:+97379816 | None:intergenic |
| GCTTGGAAGATACTCTGCCG+AGG | 0.639009 | 1:-97379096 | MsG0180005906.01.T01:CDS |
| TGAACCAAAGTCCCAACCCA+TGG | 0.639076 | 1:-97379247 | MsG0180005906.01.T01:CDS |
| GGCCAAATAAAAGAAGACTT+CGG | 0.642870 | 1:+97379968 | None:intergenic |
| ACCTGGCATCAAAGTTGACA+AGG | 0.646079 | 1:-97381241 | MsG0180005906.01.T01:intron |
| TCTGCTGAATACTACAAGCA+AGG | 0.650843 | 1:-97380786 | MsG0180005906.01.T01:CDS |
| ACCGTTGTCAGCATTCCAAG+TGG | 0.664978 | 1:-97380646 | MsG0180005906.01.T01:CDS |
| AATTGGATTGGACAATACTG+AGG | 0.667179 | 1:-97381412 | MsG0180005906.01.T01:CDS |
| TTAAGTCTCCCAACATAAGG+GGG | 0.668803 | 1:+97378791 | None:intergenic |
| ACCACTTGGAATGCTGACAA+CGG | 0.673812 | 1:+97380645 | None:intergenic |
| GAGATGTATTCACCTAGACC+GGG | 0.674915 | 1:+97381351 | None:intergenic |
| AAGGTGCTCGATTTGCCAAG+TGG | 0.677907 | 1:-97380767 | MsG0180005906.01.T01:intron |
| AGAACACCGTGCTTAAGACA+TGG | 0.678756 | 1:-97379193 | MsG0180005906.01.T01:CDS |
| GTAACGGTACCATGATTCCG+GGG | 0.691074 | 1:+97379805 | None:intergenic |
| GTTTGTGGATTGTCTCCGTG+AGG | 0.692026 | 1:-97381274 | MsG0180005906.01.T01:CDS |
| TGATGCCAAACGCTTCCCAG+CGG | 0.710626 | 1:+97381434 | None:intergenic |
| GTTCATCGGAGTAAGAAGCG+CGG | 0.758027 | 1:+97381849 | None:intergenic |
| GAGTGGAGGAAGATCCACCA+CGG | 0.775671 | 1:+97381891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAAAGTAATGAAAAA+GGG | + | Chr1:97378973-97378992 | None:intergenic | 10.0% |
| !! | GAATTTAAAAGTAATGAAAA+AGG | + | Chr1:97378974-97378993 | None:intergenic | 15.0% |
| !!! | ATGATTGCTATATATTTTTT+TGG | - | Chr1:97381995-97382014 | MsG0180005906.01.T01:five_prime_UTR | 15.0% |
| !!! | TGATTGCTATATATTTTTTT+GGG | - | Chr1:97381996-97382015 | MsG0180005906.01.T01:five_prime_UTR | 15.0% |
| !!! | TTCTTATATTGATCTTTTTT+TGG | - | Chr1:97380626-97380645 | MsG0180005906.01.T01:CDS | 15.0% |
| !! | ACATTGAAATTGAATTGAAA+TGG | - | Chr1:97380038-97380057 | MsG0180005906.01.T01:CDS | 20.0% |
| !! | TTATGTAAATCAGAAACTAA+AGG | + | Chr1:97380964-97380983 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAATCTTTTCTGT+TGG | - | Chr1:97379001-97379020 | MsG0180005906.01.T01:three_prime_UTR | 20.0% |
| !!! | AAGTTTTAATCTTTTCTGTT+GGG | - | Chr1:97379002-97379021 | MsG0180005906.01.T01:three_prime_UTR | 20.0% |
| !!! | ATATGTAATGAACCTTTTAT+TGG | - | Chr1:97380401-97380420 | MsG0180005906.01.T01:intron | 20.0% |
| !!! | GAAAAAAAAAAGACTTTTCT+TGG | - | Chr1:97381864-97381883 | MsG0180005906.01.T01:CDS | 20.0% |
| !!! | TTCCAATTAGAATGTTTTAT+CGG | + | Chr1:97379119-97379138 | None:intergenic | 20.0% |
| !!! | TTTATCCTTTTTTCTTTGTA+GGG | - | Chr1:97379858-97379877 | MsG0180005906.01.T01:CDS | 20.0% |
| !!! | TTTTATCCTTTTTTCTTTGT+AGG | - | Chr1:97379857-97379876 | MsG0180005906.01.T01:CDS | 20.0% |
| ! | AAAGATCAATATAAGAACAC+TGG | + | Chr1:97380623-97380642 | None:intergenic | 25.0% |
| ! | ACGTATAGTTAACTTTGATA+TGG | + | Chr1:97381039-97381058 | None:intergenic | 25.0% |
| ! | CATCATTAGATTAATCTGAT+TGG | - | Chr1:97380520-97380539 | MsG0180005906.01.T01:intron | 25.0% |
| ! | GAAATAAAGAGAATAGAGAA+AGG | + | Chr1:97378932-97378951 | None:intergenic | 25.0% |
| ! | TATAGGTTGTGAAATTTGAT+TGG | - | Chr1:97380358-97380377 | MsG0180005906.01.T01:intron | 25.0% |
| ! | TGTCACATATGTATATATCA+AGG | + | Chr1:97381166-97381185 | None:intergenic | 25.0% |
| ! | TGTTTAAAGATTCTGAATTC+AGG | + | Chr1:97381232-97381251 | None:intergenic | 25.0% |
| ! | TTCCGATAAAACATTCTAAT+TGG | - | Chr1:97379114-97379133 | MsG0180005906.01.T01:CDS | 25.0% |
| ! | TTGAAATTGAATTGAAATGG+TGG | - | Chr1:97380041-97380060 | MsG0180005906.01.T01:CDS | 25.0% |
| ! | TTTAGTATTTATTGCAAGCA+AGG | - | Chr1:97380461-97380480 | MsG0180005906.01.T01:intron | 25.0% |
| ! | TTTCAACAAACAAACATTCA+TGG | + | Chr1:97380191-97380210 | None:intergenic | 25.0% |
| !! | AGAATGTTTTATCGGAAAAT+TGG | + | Chr1:97379111-97379130 | None:intergenic | 25.0% |
| !! | CTCAATATCAGTGAATTTTA+AGG | - | Chr1:97381772-97381791 | MsG0180005906.01.T01:intron | 25.0% |
| !! | TGTAAGTTGAAAATGTGTAT+AGG | - | Chr1:97380341-97380360 | MsG0180005906.01.T01:intron | 25.0% |
| AAGCATGGTTAGTGTATATT+TGG | + | Chr1:97380886-97380905 | None:intergenic | 30.0% | |
| AATAACTGGTGTACTTTCAT+GGG | - | Chr1:97380226-97380245 | MsG0180005906.01.T01:intron | 30.0% | |
| ATTGCGTTCGTTAGTAATAT+AGG | - | Chr1:97379523-97379542 | MsG0180005906.01.T01:intron | 30.0% | |
| CAATGTGCTTAAATATCTAC+TGG | + | Chr1:97380323-97380342 | None:intergenic | 30.0% | |
| CACAACAGAATATATGCAAT+TGG | + | Chr1:97381264-97381283 | None:intergenic | 30.0% | |
| TAAATCAGAAACTAAAGGTG+AGG | + | Chr1:97380959-97380978 | None:intergenic | 30.0% | |
| TAATGATGTTACAAAGCAAG+AGG | + | Chr1:97380508-97380527 | None:intergenic | 30.0% | |
| TAGCAATCATGATATGTAAC+TGG | + | Chr1:97381985-97382004 | None:intergenic | 30.0% | |
| TATTAAGTCTCCCAACATAA+GGG | + | Chr1:97381948-97381967 | None:intergenic | 30.0% | |
| TCGTTAGTAATATAGGATCA+AGG | - | Chr1:97379530-97379549 | MsG0180005906.01.T01:intron | 30.0% | |
| TGGGATACCTAAAAATCAAA+GGG | - | Chr1:97381901-97381920 | MsG0180005906.01.T01:CDS | 30.0% | |
| TTGGGATACCTAAAAATCAA+AGG | - | Chr1:97381900-97381919 | MsG0180005906.01.T01:CDS | 30.0% | |
| ! | GTAATGAACCTTTTATTGGT+TGG | - | Chr1:97380405-97380424 | MsG0180005906.01.T01:intron | 30.0% |
| ! | TACTTTCATGGGTTATTCTT+TGG | - | Chr1:97380237-97380256 | MsG0180005906.01.T01:intron | 30.0% |
| ! | TCTAATTTTCATCACTCTCA+TGG | - | Chr1:97378759-97378778 | MsG0180005906.01.T01:three_prime_UTR | 30.0% |
| !! | AGTCATAACTTGTTGTGATT+TGG | - | Chr1:97379733-97379752 | MsG0180005906.01.T01:intron | 30.0% |
| !! | GTGAATTCCCTTTGATTTTT+AGG | + | Chr1:97381911-97381930 | None:intergenic | 30.0% |
| !!! | GGTTTGCTTTTGAAATATAC+AGG | - | Chr1:97380062-97380081 | MsG0180005906.01.T01:CDS | 30.0% |
| !!! | TTGTTTTGTTTGACAAACGT+TGG | + | Chr1:97378689-97378708 | None:intergenic | 30.0% |
| AACAAACATTCATGGAATGC+AGG | + | Chr1:97380183-97380202 | None:intergenic | 35.0% | |
| ACTATACCTACTAGAAGTTG+AGG | - | Chr1:97381700-97381719 | MsG0180005906.01.T01:intron | 35.0% | |
| AGAATTTCAGGCTCAACTAT+TGG | + | Chr1:97380690-97380709 | None:intergenic | 35.0% | |
| AGCCTGAAATTCTTCTTGAT+GGG | - | Chr1:97380697-97380716 | MsG0180005906.01.T01:intron | 35.0% | |
| ATAGAGAAAGGTAGTTACAG+CGG | + | Chr1:97378920-97378939 | None:intergenic | 35.0% | |
| ATTAAGTCTCCCAACATAAG+GGG | + | Chr1:97381947-97381966 | None:intergenic | 35.0% | |
| CCAAACCCTACAAAGAAAAA+AGG | + | Chr1:97379866-97379885 | None:intergenic | 35.0% | |
| CTCAAAAAGGACATTGTTCT+GGG | + | Chr1:97380790-97380809 | None:intergenic | 35.0% | |
| GAATAACTGGTGTACTTTCA+TGG | - | Chr1:97380225-97380244 | MsG0180005906.01.T01:intron | 35.0% | |
| GGCCAAATAAAAGAAGACTT+CGG | + | Chr1:97380769-97380788 | None:intergenic | 35.0% | |
| GGTTAGTGTATATTTGGCAA+TGG | + | Chr1:97380880-97380899 | None:intergenic | 35.0% | |
| GTATATTTGGCAATGGTTTC+TGG | + | Chr1:97380873-97380892 | None:intergenic | 35.0% | |
| GTATTAAGTCTCCCAACATA+AGG | + | Chr1:97381949-97381968 | None:intergenic | 35.0% | |
| GTCAAGAACCAACCAATAAA+AGG | + | Chr1:97380416-97380435 | None:intergenic | 35.0% | |
| GTTAACTATACGTGTGACTT+CGG | - | Chr1:97381046-97381065 | MsG0180005906.01.T01:intron | 35.0% | |
| GTTCTTGATCGTAGGTAATT+TGG | - | Chr1:97381283-97381302 | MsG0180005906.01.T01:CDS | 35.0% | |
| TATGTTGGGAGACTTAATAC+TGG | - | Chr1:97381949-97381968 | MsG0180005906.01.T01:CDS | 35.0% | |
| TGAGCAAAATTCCCTCAAAA+AGG | + | Chr1:97380803-97380822 | None:intergenic | 35.0% | |
| TGTGACTTCGGAAATAACTA+CGG | - | Chr1:97381058-97381077 | MsG0180005906.01.T01:intron | 35.0% | |
| TTGATCGTAGGTAATTTGGA+TGG | - | Chr1:97381287-97381306 | MsG0180005906.01.T01:CDS | 35.0% | |
| TTTACCAATCGACAACTGAT+GGG | - | Chr1:97379432-97379451 | MsG0180005906.01.T01:intron | 35.0% | |
| TTTCCATAAGCTCTTCAAGA+TGG | + | Chr1:97379696-97379715 | None:intergenic | 35.0% | |
| ! | AATTGGATTGGACAATACTG+AGG | - | Chr1:97379322-97379341 | MsG0180005906.01.T01:intron | 35.0% |
| ! | ATCAGTTGTCGATTGGTAAA+GGG | + | Chr1:97379432-97379451 | None:intergenic | 35.0% |
| ! | CAGAACAATGTCCTTTTTGA+GGG | - | Chr1:97380789-97380808 | MsG0180005906.01.T01:CDS | 35.0% |
| ! | GTCCGAAGTCTTCTTTTATT+TGG | - | Chr1:97380764-97380783 | MsG0180005906.01.T01:intron | 35.0% |
| ! | GTTTGTTGAAATAAGCTCGT+CGG | - | Chr1:97380200-97380219 | MsG0180005906.01.T01:intron | 35.0% |
| ! | TATTCTCAGTTTTTGTCAGG+TGG | - | Chr1:97381426-97381445 | MsG0180005906.01.T01:CDS | 35.0% |
| ! | TCGTATTCTCAGTTTTTGTC+AGG | - | Chr1:97381423-97381442 | MsG0180005906.01.T01:CDS | 35.0% |
| !! | CATTTGCTGTGTGTTTAGTT+TGG | - | Chr1:97380284-97380303 | MsG0180005906.01.T01:intron | 35.0% |
| !! | CTTGGTGTAATAGAGGTTTT+GGG | - | Chr1:97381882-97381901 | MsG0180005906.01.T01:CDS | 35.0% |
| !! | GACTTTTCTTGGTGTAATAG+AGG | - | Chr1:97381875-97381894 | MsG0180005906.01.T01:CDS | 35.0% |
| !! | TCTTGGTGTAATAGAGGTTT+TGG | - | Chr1:97381881-97381900 | MsG0180005906.01.T01:CDS | 35.0% |
| !!! | CCTTTTTTCTTTGTAGGGTT+TGG | - | Chr1:97379863-97379882 | MsG0180005906.01.T01:CDS | 35.0% |
| AACTGATGGGAAGAAGTTTG+TGG | - | Chr1:97379445-97379464 | MsG0180005906.01.T01:intron | 40.0% | |
| AAGCCATCTTGAAGAGCTTA+TGG | - | Chr1:97379690-97379709 | MsG0180005906.01.T01:intron | 40.0% | |
| ACCAAGAATAGCTTACCACT+TGG | + | Chr1:97379985-97380004 | None:intergenic | 40.0% | |
| ACTTCCAGTGTCCTTTCAAT+TGG | + | Chr1:97380729-97380748 | None:intergenic | 40.0% | |
| AGAGATGTATTCACCTAGAC+CGG | + | Chr1:97379387-97379406 | None:intergenic | 40.0% | |
| AGCGGTTTGAACAAGTTCAT+CGG | + | Chr1:97378902-97378921 | None:intergenic | 40.0% | |
| AGGAACTCTTCTGTTAAGCA+TGG | + | Chr1:97380901-97380920 | None:intergenic | 40.0% | |
| ATGAATCAAATGCAACCGCT+GGG | - | Chr1:97379285-97379304 | MsG0180005906.01.T01:CDS | 40.0% | |
| CAAGAAGGAAATGTTCGTCA+AGG | - | Chr1:97381677-97381696 | MsG0180005906.01.T01:intron | 40.0% | |
| CAAGATTCATTGTTTGACCC+TGG | + | Chr1:97379897-97379916 | None:intergenic | 40.0% | |
| CAGGGTCAAACAATGAATCT+TGG | - | Chr1:97379895-97379914 | MsG0180005906.01.T01:CDS | 40.0% | |
| CCTCAAAAAGGACATTGTTC+TGG | + | Chr1:97380791-97380810 | None:intergenic | 40.0% | |
| CGAAAATGAAGAAGCCAAGA+AGG | - | Chr1:97381662-97381681 | MsG0180005906.01.T01:intron | 40.0% | |
| CTTCCAGTGTCCTTTCAATT+GGG | + | Chr1:97380728-97380747 | None:intergenic | 40.0% | |
| CTTGACGAACATTTCCTTCT+TGG | + | Chr1:97381679-97381698 | None:intergenic | 40.0% | |
| CTTTACCAATCGACAACTGA+TGG | - | Chr1:97379431-97379450 | MsG0180005906.01.T01:intron | 40.0% | |
| GAAAGAATACCCCTGTAAGA+CGG | + | Chr1:97380265-97380284 | None:intergenic | 40.0% | |
| GAGCCTGAAATTCTTCTTGA+TGG | - | Chr1:97380696-97380715 | MsG0180005906.01.T01:intron | 40.0% | |
| GCCTGAAATTCTTCTTGATG+GGG | - | Chr1:97380698-97380717 | MsG0180005906.01.T01:intron | 40.0% | |
| GTCTTAAAGCCTGTTTGGAT+TGG | + | Chr1:97379783-97379802 | None:intergenic | 40.0% | |
| TAGAAATCTGTTGCATCTCG+TGG | - | Chr1:97379242-97379261 | MsG0180005906.01.T01:CDS | 40.0% | |
| TATAGGATCAAGGCTCTGTT+TGG | - | Chr1:97379540-97379559 | MsG0180005906.01.T01:intron | 40.0% | |
| TCACAGTCTTAAAGCCTGTT+TGG | + | Chr1:97379788-97379807 | None:intergenic | 40.0% | |
| TCCCCATCAAGAAGAATTTC+AGG | + | Chr1:97380702-97380721 | None:intergenic | 40.0% | |
| TCTAACAAGCCAATCCAAAC+AGG | - | Chr1:97379771-97379790 | MsG0180005906.01.T01:intron | 40.0% | |
| TCTGCTGAATACTACAAGCA+AGG | - | Chr1:97379948-97379967 | MsG0180005906.01.T01:CDS | 40.0% | |
| TCTGTTGTGTTCTTGATCGT+AGG | - | Chr1:97381275-97381294 | MsG0180005906.01.T01:CDS | 40.0% | |
| TTAAGTCTCCCAACATAAGG+GGG | + | Chr1:97381946-97381965 | None:intergenic | 40.0% | |
| ! | AATTTTGCTCAAGCCTAGCA+TGG | - | Chr1:97380812-97380831 | MsG0180005906.01.T01:CDS | 40.0% |
| ! | AGCAGCTCAAAAGTCTCTTT+TGG | - | Chr1:97381587-97381606 | MsG0180005906.01.T01:intron | 40.0% |
| ! | CATCAGTTGTCGATTGGTAA+AGG | + | Chr1:97379433-97379452 | None:intergenic | 40.0% |
| ! | CCAGAACAATGTCCTTTTTG+AGG | - | Chr1:97380788-97380807 | MsG0180005906.01.T01:CDS | 40.0% |
| ! | GTTGGTTGATCATAACTTGC+TGG | - | Chr1:97379825-97379844 | MsG0180005906.01.T01:CDS | 40.0% |
| !! | AACAATGAATCTTGGTGCCA+AGG | - | Chr1:97379903-97379922 | MsG0180005906.01.T01:CDS | 40.0% |
| !! | CAGGCTTTAAGACTGTGATT+TGG | - | Chr1:97379790-97379809 | MsG0180005906.01.T01:intron | 40.0% |
| AAGCCAATCCATCCAAACCT+TGG | + | Chr1:97379923-97379942 | None:intergenic | 45.0% | |
| AAGCTCGTCGGTAGAATAAC+TGG | - | Chr1:97380212-97380231 | MsG0180005906.01.T01:intron | 45.0% | |
| AAGGGTTGTTAGCGATCCAT+TGG | + | Chr1:97378813-97378832 | None:intergenic | 45.0% | |
| ACCACTTGGAATGCTGACAA+CGG | + | Chr1:97380092-97380111 | None:intergenic | 45.0% | |
| ACCTGGCATCAAAGTTGACA+AGG | - | Chr1:97379493-97379512 | MsG0180005906.01.T01:intron | 45.0% | |
| ACCTTGCCATGTCTTAAGCA+CGG | + | Chr1:97381550-97381569 | None:intergenic | 45.0% | |
| ACCTTGTCAACTTTGATGCC+AGG | + | Chr1:97379497-97379516 | None:intergenic | 45.0% | |
| ACGATATGCTGCTATCTCTC+AGG | - | Chr1:97380153-97380172 | MsG0180005906.01.T01:intron | 45.0% | |
| AGAACACCGTGCTTAAGACA+TGG | - | Chr1:97381541-97381560 | MsG0180005906.01.T01:intron | 45.0% | |
| AGGGTTGTTAGCGATCCATT+GGG | + | Chr1:97378812-97378831 | None:intergenic | 45.0% | |
| ATGAGAAAGACACGTGCCAT+GGG | + | Chr1:97381506-97381525 | None:intergenic | 45.0% | |
| ATTTGGTCTCAGTGGTTGGT+TGG | - | Chr1:97379807-97379826 | MsG0180005906.01.T01:intron | 45.0% | |
| CAATACTGAGGTTAATCGCC+AGG | - | Chr1:97379334-97379353 | MsG0180005906.01.T01:intron | 45.0% | |
| CAGAAACTAAAGGTGAGGTG+CGG | + | Chr1:97380954-97380973 | None:intergenic | 45.0% | |
| CAGGCTCAACTATTGGAACA+AGG | + | Chr1:97380683-97380702 | None:intergenic | 45.0% | |
| CAGGTACAATGTTCTCCTCA+CGG | + | Chr1:97379478-97379497 | None:intergenic | 45.0% | |
| GAGACACCTCAACTTCTAGT+AGG | + | Chr1:97381709-97381728 | None:intergenic | 45.0% | |
| GAGATGTATTCACCTAGACC+GGG | + | Chr1:97379386-97379405 | None:intergenic | 45.0% | |
| GAGCTGCTTCAACATTCTCA+GGG | + | Chr1:97381575-97381594 | None:intergenic | 45.0% | |
| GATGAATCAAATGCAACCGC+TGG | - | Chr1:97379284-97379303 | MsG0180005906.01.T01:CDS | 45.0% | |
| GCCAAGTGGTAAGCTATTCT+TGG | - | Chr1:97379981-97380000 | MsG0180005906.01.T01:CDS | 45.0% | |
| GCGTTTGGCATCAATTGGAT+TGG | - | Chr1:97379310-97379329 | MsG0180005906.01.T01:intron | 45.0% | |
| GGTCTAGGTGAATACATCTC+TGG | - | Chr1:97379386-97379405 | MsG0180005906.01.T01:intron | 45.0% | |
| GTCAGGTGGACAATCAGAAA+TGG | - | Chr1:97381440-97381459 | MsG0180005906.01.T01:CDS | 45.0% | |
| TATGAGAAAGACACGTGCCA+TGG | + | Chr1:97381507-97381526 | None:intergenic | 45.0% | |
| TCAACTCTCTCTCTTCCCAA+TGG | - | Chr1:97378794-97378813 | MsG0180005906.01.T01:three_prime_UTR | 45.0% | |
| TCATTGTTTGACCCTGGTAG+AGG | + | Chr1:97379891-97379910 | None:intergenic | 45.0% | |
| TCTTCCCATCAGTTGTCGAT+TGG | + | Chr1:97379439-97379458 | None:intergenic | 45.0% | |
| TGAGCTGCTTCAACATTCTC+AGG | + | Chr1:97381576-97381595 | None:intergenic | 45.0% | |
| TGCTCTTTGTGTTCCATTGC+AGG | - | Chr1:97380650-97380669 | MsG0180005906.01.T01:CDS | 45.0% | |
| TGTGTTCCATTGCAGGACAA+CGG | - | Chr1:97380657-97380676 | MsG0180005906.01.T01:intron | 45.0% | |
| ! | AGAAGTTGAGGTGTCTCTTG+TGG | - | Chr1:97381712-97381731 | MsG0180005906.01.T01:intron | 45.0% |
| ! | TGGTGCTGAGCACAAAGAAA+GGG | - | Chr1:97380842-97380861 | MsG0180005906.01.T01:CDS | 45.0% |
| ! | TTTGCTGTCCCCCTTATGTT+GGG | - | Chr1:97381935-97381954 | MsG0180005906.01.T01:CDS | 45.0% |
| !! | AGACTGTGATTTGGTCTCAG+TGG | - | Chr1:97379799-97379818 | MsG0180005906.01.T01:intron | 45.0% |
| !! | ATTCTTTGGTGCCGTCTTAC+AGG | - | Chr1:97380251-97380270 | MsG0180005906.01.T01:intron | 45.0% |
| !! | TGAATCTTGGTGCCAAGGTT+TGG | - | Chr1:97379908-97379927 | MsG0180005906.01.T01:CDS | 45.0% |
| !! | TGTGATTTGGTCTCAGTGGT+TGG | - | Chr1:97379803-97379822 | MsG0180005906.01.T01:intron | 45.0% |
| !! | TTCTTTGGTGCCGTCTTACA+GGG | - | Chr1:97380252-97380271 | MsG0180005906.01.T01:intron | 45.0% |
| !! | TTTTGCTGTCCCCCTTATGT+TGG | - | Chr1:97381934-97381953 | MsG0180005906.01.T01:CDS | 45.0% |
| !!! | CTCTTGTGGCTTTTGGCTTT+TGG | - | Chr1:97381726-97381745 | MsG0180005906.01.T01:intron | 45.0% |
| AAAGACACGTGCCATGGGTT+GGG | + | Chr1:97381501-97381520 | None:intergenic | 50.0% | |
| AAGCCTAGCATGGTTACACC+TGG | - | Chr1:97380822-97380841 | MsG0180005906.01.T01:CDS | 50.0% | |
| ACCGTGCTTAAGACATGGCA+AGG | - | Chr1:97381546-97381565 | MsG0180005906.01.T01:intron | 50.0% | |
| ACCGTTGTCAGCATTCCAAG+TGG | - | Chr1:97380088-97380107 | MsG0180005906.01.T01:intron | 50.0% | |
| AGGTTAATCGCCAGGCTTAC+AGG | - | Chr1:97379342-97379361 | MsG0180005906.01.T01:intron | 50.0% | |
| ATGGGGACCACCCAATTGAA+AGG | - | Chr1:97380715-97380734 | MsG0180005906.01.T01:intron | 50.0% | |
| CCACCCAATTGAAAGGACAC+TGG | - | Chr1:97380722-97380741 | MsG0180005906.01.T01:intron | 50.0% | |
| CCAGTGTCCTTTCAATTGGG+TGG | + | Chr1:97380725-97380744 | None:intergenic | 50.0% | |
| CGTGAGGAGAACATTGTACC+TGG | - | Chr1:97379476-97379495 | MsG0180005906.01.T01:intron | 50.0% | |
| CTAAAGGTGAGGTGCGGTAA+CGG | + | Chr1:97380948-97380967 | None:intergenic | 50.0% | |
| CTTAAGCACGGTGTTCTGCA+GGG | + | Chr1:97381538-97381557 | None:intergenic | 50.0% | |
| CTTGGAAGATACTCTGCCGA+GGG | - | Chr1:97381639-97381658 | MsG0180005906.01.T01:intron | 50.0% | |
| CTTTCTTTGTGCTCAGCACC+AGG | + | Chr1:97380843-97380862 | None:intergenic | 50.0% | |
| GACTTCGGACCATACCTTCT+CGG | + | Chr1:97380754-97380773 | None:intergenic | 50.0% | |
| GCAAAAGTTGCCTGTAAGCC+TGG | + | Chr1:97379355-97379374 | None:intergenic | 50.0% | |
| GTAACGGTACCATGATTCCG+GGG | + | Chr1:97380932-97380951 | None:intergenic | 50.0% | |
| GTATCTTCCAAGCTGAGCCA+AGG | + | Chr1:97381631-97381650 | None:intergenic | 50.0% | |
| GTGCCAAGGTTTGGATGGAT+TGG | - | Chr1:97379917-97379936 | MsG0180005906.01.T01:CDS | 50.0% | |
| GTTCATCGGAGTAAGAAGCG+CGG | + | Chr1:97378888-97378907 | None:intergenic | 50.0% | |
| TCCTTAACAGCCAAGGCAGA+AGG | + | Chr1:97380115-97380134 | None:intergenic | 50.0% | |
| TCCTTCTGCCTTGGCTGTTA+AGG | - | Chr1:97380111-97380130 | MsG0180005906.01.T01:intron | 50.0% | |
| TCTTAAGCACGGTGTTCTGC+AGG | + | Chr1:97381539-97381558 | None:intergenic | 50.0% | |
| TGAACCAAAGTCCCAACCCA+TGG | - | Chr1:97381487-97381506 | MsG0180005906.01.T01:CDS | 50.0% | |
| TGCCTTGGCTGTTAAGGAAG+CGG | - | Chr1:97380117-97380136 | MsG0180005906.01.T01:intron | 50.0% | |
| TGGAAGTTGCCGAGAAGGTA+TGG | - | Chr1:97380742-97380761 | MsG0180005906.01.T01:intron | 50.0% | |
| ! | AAGGTGCTCGATTTGCCAAG+TGG | - | Chr1:97379967-97379986 | MsG0180005906.01.T01:CDS | 50.0% |
| ! | AGGGTTTGGTTCCTCTACCA+GGG | - | Chr1:97379877-97379896 | MsG0180005906.01.T01:CDS | 50.0% |
| ! | CAACTTTTGCTCACCACACC+CGG | - | Chr1:97379365-97379384 | MsG0180005906.01.T01:intron | 50.0% |
| ! | CGGTAACGGTACCATGATTC+CGG | + | Chr1:97380934-97380953 | None:intergenic | 50.0% |
| ! | CTGAGCCAAGGAGTTAGCTT+TGG | + | Chr1:97381619-97381638 | None:intergenic | 50.0% |
| ! | CTGGTGCTGAGCACAAAGAA+AGG | - | Chr1:97380841-97380860 | MsG0180005906.01.T01:CDS | 50.0% |
| ! | GGCTTCTTCATTTTCGCCCT+CGG | + | Chr1:97381658-97381677 | None:intergenic | 50.0% |
| ! | GGTAACGGTACCATGATTCC+GGG | + | Chr1:97380933-97380952 | None:intergenic | 50.0% |
| ! | GTTTGTGGATTGTCTCCGTG+AGG | - | Chr1:97379460-97379479 | MsG0180005906.01.T01:intron | 50.0% |
| ! | TAGGGTTTGGTTCCTCTACC+AGG | - | Chr1:97379876-97379895 | MsG0180005906.01.T01:CDS | 50.0% |
| !! | CCAAGGAGTTAGCTTTGGCA+CGG | + | Chr1:97381614-97381633 | None:intergenic | 50.0% |
| !! | GAGGTGTCTCTTGTGGCTTT+TGG | - | Chr1:97381719-97381738 | MsG0180005906.01.T01:intron | 50.0% |
| !! | GGGAAGCGTTTGGCATCAAT+TGG | - | Chr1:97379305-97379324 | MsG0180005906.01.T01:intron | 50.0% |
| !! | TCTTGGTGCCAAGGTTTGGA+TGG | - | Chr1:97379912-97379931 | MsG0180005906.01.T01:CDS | 50.0% |
| !! | TCTTTGGTGCCGTCTTACAG+GGG | - | Chr1:97380253-97380272 | MsG0180005906.01.T01:intron | 50.0% |
| AACCCTTTCTCTTCTCGCCG+TGG | - | Chr1:97378826-97378845 | MsG0180005906.01.T01:three_prime_UTR | 55.0% | |
| AAGAGAGACGTTGCGAGTGG+AGG | + | Chr1:97378860-97378879 | None:intergenic | 55.0% | |
| ACAAGGCCGTTGTCCTGCAA+TGG | + | Chr1:97380666-97380685 | None:intergenic | 55.0% | |
| AGCATATCGTGCAAGTCCCC+AGG | + | Chr1:97380143-97380162 | None:intergenic | 55.0% | |
| CACCACGGCGAGAAGAGAAA+GGG | + | Chr1:97378831-97378850 | None:intergenic | 55.0% | |
| CCGTGCCAAAGCTAACTCCT+TGG | - | Chr1:97381611-97381630 | MsG0180005906.01.T01:intron | 55.0% | |
| GAAAGACACGTGCCATGGGT+TGG | + | Chr1:97381502-97381521 | None:intergenic | 55.0% | |
| GACACTGGAAGTTGCCGAGA+AGG | - | Chr1:97380737-97380756 | MsG0180005906.01.T01:intron | 55.0% | |
| GAGTGGAGGAAGATCCACCA+CGG | + | Chr1:97378846-97378865 | None:intergenic | 55.0% | |
| GCACCAGGTGTAACCATGCT+AGG | + | Chr1:97380828-97380847 | None:intergenic | 55.0% | |
| GCTAACTCCTTGGCTCAGCT+TGG | - | Chr1:97381621-97381640 | MsG0180005906.01.T01:intron | 55.0% | |
| GCTTGGAAGATACTCTGCCG+AGG | - | Chr1:97381638-97381657 | MsG0180005906.01.T01:intron | 55.0% | |
| GTATTCACCTAGACCGGGTG+TGG | + | Chr1:97379381-97379400 | None:intergenic | 55.0% | |
| TCCAAGTGGTCCTTCTGCCT+TGG | - | Chr1:97380102-97380121 | MsG0180005906.01.T01:intron | 55.0% | |
| TCTGTTGCATCTCGTGGTCG+TGG | - | Chr1:97379248-97379267 | MsG0180005906.01.T01:CDS | 55.0% | |
| TGATGCCAAACGCTTCCCAG+CGG | + | Chr1:97379303-97379322 | None:intergenic | 55.0% | |
| ! | TCGGAGTAAGAAGCGCGGAT+CGG | + | Chr1:97378883-97378902 | None:intergenic | 55.0% |
| ACCATGATTCCGGGGACTGC+AGG | + | Chr1:97380924-97380943 | None:intergenic | 60.0% | |
| AGAGTTCCTCCTGCAGTCCC+CGG | - | Chr1:97380912-97380931 | MsG0180005906.01.T01:intron | 60.0% | |
| ATGATTCCGGGGACTGCAGG+AGG | + | Chr1:97380921-97380940 | None:intergenic | 60.0% | |
| CCACCACGGCGAGAAGAGAA+AGG | + | Chr1:97378832-97378851 | None:intergenic | 60.0% | |
| CCTTTCTCTTCTCGCCGTGG+TGG | - | Chr1:97378829-97378848 | MsG0180005906.01.T01:three_prime_UTR | 60.0% | |
| CGGAAGAGAGACGTTGCGAG+TGG | + | Chr1:97378863-97378882 | None:intergenic | 60.0% | |
| GCCAAGGCAGAAGGACCACT+TGG | + | Chr1:97380106-97380125 | None:intergenic | 60.0% | |
| GCTGTTAAGGAAGCGGCCTG+GGG | - | Chr1:97380124-97380143 | MsG0180005906.01.T01:intron | 60.0% | |
| GGCCGCTTCCTTAACAGCCA+AGG | + | Chr1:97380122-97380141 | None:intergenic | 60.0% | |
| GGCTGTTAAGGAAGCGGCCT+GGG | - | Chr1:97380123-97380142 | MsG0180005906.01.T01:intron | 60.0% | |
| TCCTGCAGTCCCCGGAATCA+TGG | - | Chr1:97380920-97380939 | MsG0180005906.01.T01:intron | 60.0% | |
| TGGCTGTTAAGGAAGCGGCC+TGG | - | Chr1:97380122-97380141 | MsG0180005906.01.T01:intron | 60.0% | |
| TTGCTCACCACACCCGGTCT+AGG | - | Chr1:97379371-97379390 | MsG0180005906.01.T01:intron | 60.0% | |
| !! | CGTGCCATGGGTTGGGACTT+TGG | + | Chr1:97381494-97381513 | None:intergenic | 60.0% |
| !! | TGCAACCGCTGGGAAGCGTT+TGG | - | Chr1:97379295-97379314 | MsG0180005906.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 97378668 | 97382088 | 97378668 | ID=MsG0180005906.01;Name=MsG0180005906.01 |
| Chr1 | mRNA | 97378668 | 97382088 | 97378668 | ID=MsG0180005906.01.T01;Parent=MsG0180005906.01;Name=MsG0180005906.01.T01;_AED=0.27;_eAED=0.27;_QI=110|1|1|1|1|1|6|375|387 |
| Chr1 | exon | 97378668 | 97379321 | 97378668 | ID=MsG0180005906.01.T01:exon:16392;Parent=MsG0180005906.01.T01 |
| Chr1 | exon | 97379815 | 97380084 | 97379815 | ID=MsG0180005906.01.T01:exon:16391;Parent=MsG0180005906.01.T01 |
| Chr1 | exon | 97380582 | 97380672 | 97380582 | ID=MsG0180005906.01.T01:exon:16390;Parent=MsG0180005906.01.T01 |
| Chr1 | exon | 97380768 | 97380877 | 97380768 | ID=MsG0180005906.01.T01:exon:16389;Parent=MsG0180005906.01.T01 |
| Chr1 | exon | 97381242 | 97381511 | 97381242 | ID=MsG0180005906.01.T01:exon:16388;Parent=MsG0180005906.01.T01 |
| Chr1 | exon | 97381835 | 97382088 | 97381835 | ID=MsG0180005906.01.T01:exon:16387;Parent=MsG0180005906.01.T01 |
| Chr1 | five_prime_UTR | 97381979 | 97382088 | 97381979 | ID=MsG0180005906.01.T01:five_prime_utr;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97381835 | 97381978 | 97381835 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97381242 | 97381511 | 97381242 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97380768 | 97380877 | 97380768 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97380582 | 97380672 | 97380582 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97379815 | 97380084 | 97379815 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | CDS | 97379043 | 97379321 | 97379043 | ID=MsG0180005906.01.T01:cds;Parent=MsG0180005906.01.T01 |
| Chr1 | three_prime_UTR | 97378668 | 97379042 | 97378668 | ID=MsG0180005906.01.T01:three_prime_utr;Parent=MsG0180005906.01.T01 |
| Gene Sequence |
| Protein sequence |
