AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016685.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016685.01.T01 MTR_3g093270 99.048 420 4 0 1 420 46 465 0.0 849
MsG0380016685.01.T01 MTR_3g093290 95.309 405 19 0 1 405 46 450 0.0 782
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016685.01.T01 AT1G18010 70.823 401 112 2 1 397 49 448 0.0 582
MsG0380016685.01.T01 AT1G18000 70.823 401 112 2 1 397 49 448 0.0 582

Find 99 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCATGTTCAATGCTCTTTC+AGG 0.180358 3:-86570656 MsG0380016685.01.T01:CDS
CTGTTCTTGGATCTATTATA+TGG 0.213344 3:-86569830 MsG0380016685.01.T01:CDS
TTCTTAAATTGTTCTATAAT+TGG 0.220500 3:-86570073 MsG0380016685.01.T01:CDS
ATTAGTGTGGTTGCTGTTCT+TGG 0.242665 3:-86569843 MsG0380016685.01.T01:CDS
AACCATCAAAACTAACAATA+AGG 0.245935 3:+86568728 None:intergenic
TGTTTCAGAGTATGGTTTAC+TGG 0.260675 3:-86569686 MsG0380016685.01.T01:CDS
GCATCGGAGCAGGTCTATTA+TGG 0.282301 3:-86570403 MsG0380016685.01.T01:CDS
GGATGCTATGTTTCAGAGTA+TGG 0.305991 3:-86569694 MsG0380016685.01.T01:CDS
GTTAATGATGGAACTTATAT+AGG 0.312658 3:-86570227 MsG0380016685.01.T01:CDS
TTCAACATGGGTGGTGTTAT+TGG 0.313659 3:-86570302 MsG0380016685.01.T01:CDS
GTAAGTTCCTTTACGATTCA+TGG 0.318909 3:+86570346 None:intergenic
CGGTTGTAATTAAGAATAAA+AGG 0.319960 3:+86570269 None:intergenic
GTTGAACAATGTGTTCTATT+GGG 0.323401 3:-86569949 MsG0380016685.01.T01:CDS
TACACAACCTTTGCAGTGTT+TGG 0.337488 3:-86570575 MsG0380016685.01.T01:CDS
TGTTCTTGGATCTATTATAT+GGG 0.338310 3:-86569829 MsG0380016685.01.T01:CDS
TGGAACTTATATAGGTTTCA+TGG 0.341520 3:-86570219 MsG0380016685.01.T01:CDS
GGTTGAACAATGTGTTCTAT+TGG 0.354183 3:-86569950 MsG0380016685.01.T01:CDS
AATTGGGATTGGTTACACTA+TGG 0.364274 3:-86569907 MsG0380016685.01.T01:CDS
ACATAAACATGGCAAGGTCT+TGG 0.373279 3:-86569781 MsG0380016685.01.T01:CDS
TGGCACAGTTGATAGTGAAT+TGG 0.376213 3:-86568773 MsG0380016685.01.T01:CDS
TCTTATTAACATGATTAAAC+TGG 0.395610 3:+86569997 None:intergenic
ATAGTTGCCGGCGCCCTTCT+CGG 0.399605 3:-86570425 MsG0380016685.01.T01:CDS
TTCAATGCTCTTTCAGGAAT+GGG 0.403885 3:-86570650 MsG0380016685.01.T01:CDS
GCCCTTCTCGGCATCGGAGC+AGG 0.411839 3:-86570413 MsG0380016685.01.T01:CDS
GCACAAATGATAGGGTCAAT+TGG 0.413131 3:-86569924 MsG0380016685.01.T01:CDS
TATTGGGGAGCACAAATGAT+AGG 0.414914 3:-86569933 MsG0380016685.01.T01:CDS
AGGTACACTGGATTCTATAA+AGG 0.416951 3:-86568855 MsG0380016685.01.T01:CDS
GTTGTTTATGATTATAGTAA+AGG 0.424936 3:+86570462 None:intergenic
TTCTCATGATTCCTGCAGCT+TGG 0.429163 3:-86570043 MsG0380016685.01.T01:CDS
TAGAAAGAAAAGAGGAATTG+TGG 0.430494 3:-86569868 MsG0380016685.01.T01:CDS
TTTGCAGTGTTTGGTATCCT+AGG 0.434690 3:-86570566 MsG0380016685.01.T01:CDS
ACCATCAAAACTAACAATAA+GGG 0.439660 3:+86568729 None:intergenic
CACAAATGATAGGGTCAATT+GGG 0.440466 3:-86569923 MsG0380016685.01.T01:CDS
TTTAAGAGTAGAAAGAAAAG+AGG 0.440838 3:-86569876 MsG0380016685.01.T01:CDS
AGAAAGAAAAGAGGAATTGT+GGG 0.444597 3:-86569867 MsG0380016685.01.T01:CDS
GTGCCATTGGAGACACGTTA+TGG 0.446519 3:+86568790 None:intergenic
GAAGGAGCAACTTGTTTGAC+AGG 0.447780 3:+86568669 None:intergenic
ACAGACCCATTGTTATTTGA+AGG 0.448515 3:+86568651 None:intergenic
GGCACAGTTGATAGTGAATT+GGG 0.449830 3:-86568772 MsG0380016685.01.T01:CDS
GCCGGCGCCCTTCTCGGCAT+CGG 0.454685 3:-86570419 MsG0380016685.01.T01:CDS
CATCGGAGCAGGTCTATTAT+GGG 0.456390 3:-86570402 MsG0380016685.01.T01:CDS
TTCACTATCAACTGTGCCAT+TGG 0.456806 3:+86568777 None:intergenic
GGTTGTGTAAAGTGCGGTTA+AGG 0.466041 3:+86570589 None:intergenic
AGTAAAGTTATTCGTGATGA+TGG 0.467385 3:-86570149 MsG0380016685.01.T01:CDS
TATTATATGGGGTGGTGCAT+TGG 0.473668 3:-86569817 MsG0380016685.01.T01:CDS
CTTTCAGGAATGGGAGGTGG+TGG 0.494644 3:-86570641 MsG0380016685.01.T01:CDS
TTGCTCCTTCAAATAACAAT+GGG 0.494966 3:-86568656 MsG0380016685.01.T01:CDS
ATGATAGGGTCAATTGGGAT+TGG 0.495144 3:-86569918 MsG0380016685.01.T01:CDS
GTTCAATGCTCTTTCAGGAA+TGG 0.495365 3:-86570651 MsG0380016685.01.T01:CDS
AACATGGGTGGTGTTATTGG+TGG 0.496677 3:-86570299 MsG0380016685.01.T01:CDS
TCCGATGCCGAGAAGGGCGC+CGG 0.500028 3:+86570418 None:intergenic
AAGTGCGGTTAAGGCGTTGT+TGG 0.502056 3:+86570598 None:intergenic
TAAGTTCCTTTACGATTCAT+GGG 0.510847 3:+86570347 None:intergenic
TATAAAGGAATACAGAGTGC+AGG 0.516636 3:-86568840 MsG0380016685.01.T01:CDS
CGGCAACTATAGCAAAAGCT+TGG 0.518114 3:+86570438 None:intergenic
AGTATGGTTTACTGGTCCAT+TGG 0.520928 3:-86569678 MsG0380016685.01.T01:CDS
GAAAGAGAACAATGAGGAAG+AGG 0.525286 3:-86568697 MsG0380016685.01.T01:CDS
CAAGCTGCTACGGTTAATGA+TGG 0.526016 3:-86570239 MsG0380016685.01.T01:CDS
GTCATTAGCTAGAGCTCCAA+TGG 0.537931 3:+86569662 None:intergenic
ATGACTCTGAAGTTCTTAGC+AGG 0.541389 3:-86569644 MsG0380016685.01.T01:intron
GTGCAGGGGCTGCAGTTGCA+TGG 0.546926 3:-86568824 MsG0380016685.01.T01:CDS
ACCTGCTCCGATGCCGAGAA+GGG 0.549963 3:+86570412 None:intergenic
CCGTGGTGATCAAGCTGCTA+CGG 0.550707 3:-86570249 MsG0380016685.01.T01:CDS
TATCCACCCATGAATCGTAA+AGG 0.557634 3:-86570353 MsG0380016685.01.T01:CDS
CAGTTTAGTTTGAGAACAAG+AGG 0.558289 3:-86569972 MsG0380016685.01.T01:CDS
TCACGAATAACTTTACTAGC+AGG 0.559403 3:+86570155 None:intergenic
GACCTGCTCCGATGCCGAGA+AGG 0.561229 3:+86570411 None:intergenic
GTTGCTCCTTCAAATAACAA+TGG 0.563333 3:-86568657 MsG0380016685.01.T01:CDS
ATAAAGGAATACAGAGTGCA+GGG 0.563470 3:-86568839 MsG0380016685.01.T01:CDS
TTGAACAATGTGTTCTATTG+GGG 0.569076 3:-86569948 MsG0380016685.01.T01:CDS
TTACACATACACAGGTACAC+TGG 0.578312 3:-86568867 MsG0380016685.01.T01:intron
GTTCTTGGATCTATTATATG+GGG 0.579371 3:-86569828 MsG0380016685.01.T01:CDS
GCTCTTTCAGGAATGGGAGG+TGG 0.583306 3:-86570644 MsG0380016685.01.T01:CDS
CTTGGATCTATTATATGGGG+TGG 0.589106 3:-86569825 MsG0380016685.01.T01:CDS
AGAGAACAATGAGGAAGAGG+AGG 0.591963 3:-86568694 MsG0380016685.01.T01:CDS
AAATTACTAGACCAAGCTGC+AGG 0.599898 3:+86570032 None:intergenic
GATTAAACATAAACATGGCA+AGG 0.600741 3:-86569787 MsG0380016685.01.T01:CDS
TTTATTCTTAATTACAACCG+TGG 0.604418 3:-86570266 MsG0380016685.01.T01:CDS
ATTGGGGAGCACAAATGATA+GGG 0.606614 3:-86569932 MsG0380016685.01.T01:CDS
TCAACTTATGTACTCTACGC+TGG 0.608201 3:-86570491 MsG0380016685.01.T01:CDS
GGTGGCATCTACAACATCCT+CGG 0.616298 3:-86570542 MsG0380016685.01.T01:CDS
GTGTTTGGTATCCTAGGTGG+TGG 0.616607 3:-86570560 MsG0380016685.01.T01:CDS
TAACCATAACGTGTCTCCAA+TGG 0.617946 3:-86568793 MsG0380016685.01.T01:CDS
AGGAATTGTGGGAATTAGTG+TGG 0.626228 3:-86569856 MsG0380016685.01.T01:CDS
GTTCCTTTACGATTCATGGG+TGG 0.628209 3:+86570350 None:intergenic
TGTTGTAGATGCCACCACCT+AGG 0.637389 3:+86570549 None:intergenic
AAATGTTGCAACTGAGTGTG+TGG 0.638201 3:-86570099 MsG0380016685.01.T01:CDS
AATGCTCTTTCAGGAATGGG+AGG 0.638536 3:-86570647 MsG0380016685.01.T01:CDS
GGTCTATTATGGGCTGCACA+AGG 0.640527 3:-86570392 MsG0380016685.01.T01:CDS
TAGGATACCAAACACTGCAA+AGG 0.650625 3:+86570568 None:intergenic
GCAGTGTTTGGTATCCTAGG+TGG 0.651404 3:-86570563 MsG0380016685.01.T01:CDS
AATCAGATTAAACATAAACA+TGG 0.664350 3:-86569792 MsG0380016685.01.T01:CDS
AGTTTAGTTTGAGAACAAGA+GGG 0.664873 3:-86569971 MsG0380016685.01.T01:CDS
GGCTGTGAAAGAGAACAATG+AGG 0.665070 3:-86568703 MsG0380016685.01.T01:CDS
TGCAAAGGTTGTGTAAAGTG+CGG 0.675637 3:+86570583 None:intergenic
CCGTAGCAGCTTGATCACCA+CGG 0.690669 3:+86570249 None:intergenic
TAAAGGAATACAGAGTGCAG+GGG 0.705125 3:-86568838 MsG0380016685.01.T01:CDS
CCTGCGAAAAGAGTTAAGTG+AGG 0.734855 3:+86570518 None:intergenic
AAAGAGTTAAGTGAGGTCCG+AGG 0.738397 3:+86570525 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATGATATATGAAATT+TGG - Chr3:86570374-86570393 MsG0380016685.01.T01:CDS 10.0%
!! AAAGAAAAATACAAAACAAA+AGG + Chr3:86569574-86569593 None:intergenic 15.0%
!! AGTTAAAAATATATTTCAAG+TGG + Chr3:86569826-86569845 None:intergenic 15.0%
!! TTCTTAAATTGTTCTATAAT+TGG - Chr3:86569224-86569243 MsG0380016685.01.T01:intron 15.0%
!!! GTTAATAAATATTTAGAGTA+GGG - Chr3:86570099-86570118 MsG0380016685.01.T01:CDS 15.0%
!!! TGTTAATAAATATTTAGAGT+AGG - Chr3:86570098-86570117 MsG0380016685.01.T01:CDS 15.0%
!!! TTAGTATTTGTTAACAAAAA+GGG - Chr3:86569988-86570007 MsG0380016685.01.T01:CDS 15.0%
!!! TTGTTTTGTATTTTTCTTTT+GGG - Chr3:86569575-86569594 MsG0380016685.01.T01:intron 15.0%
!!! TTTAGTATTTGTTAACAAAA+AGG - Chr3:86569987-86570006 MsG0380016685.01.T01:CDS 15.0%
!!! TTTGTTTTGTATTTTTCTTT+TGG - Chr3:86569574-86569593 MsG0380016685.01.T01:intron 15.0%
!! AAAAAGTAACTCAAAACAAA+TGG + Chr3:86569739-86569758 None:intergenic 20.0%
!! AATCAGATTAAACATAAACA+TGG - Chr3:86569505-86569524 MsG0380016685.01.T01:intron 20.0%
!! CTAAAAATACAAATTAGTGT+TGG + Chr3:86570321-86570340 None:intergenic 20.0%
!! GTATGATAATAGTTGAAATT+TGG - Chr3:86570200-86570219 MsG0380016685.01.T01:CDS 20.0%
!! GTTGTTTATGATTATAGTAA+AGG + Chr3:86568838-86568857 None:intergenic 20.0%
!! TCTTATTAACATGATTAAAC+TGG + Chr3:86569303-86569322 None:intergenic 20.0%
!!! GAACTTACATTTCAATTTTT+TGG - Chr3:86568966-86568985 MsG0380016685.01.T01:intron 20.0%
!!! TGATGATGATAATTGAAATT+TGG - Chr3:86570282-86570301 MsG0380016685.01.T01:CDS 20.0%
! AACCATCAAAACTAACAATA+AGG + Chr3:86570572-86570591 None:intergenic 25.0%
! ACCATCAAAACTAACAATAA+GGG + Chr3:86570571-86570590 None:intergenic 25.0%
! CGGTTGTAATTAAGAATAAA+AGG + Chr3:86569031-86569050 None:intergenic 25.0%
! TGTTCTTGGATCTATTATAT+GGG - Chr3:86569468-86569487 MsG0380016685.01.T01:intron 25.0%
! TTAGTGATTAGAATTTCTTG+TGG - Chr3:86570176-86570195 MsG0380016685.01.T01:CDS 25.0%
! TTTAAGAGTAGAAAGAAAAG+AGG - Chr3:86569421-86569440 MsG0380016685.01.T01:intron 25.0%
! TTTATTCTTAATTACAACCG+TGG - Chr3:86569031-86569050 MsG0380016685.01.T01:intron 25.0%
!! GTCTATTTCTTGTCAAAATT+TGG - Chr3:86570121-86570140 MsG0380016685.01.T01:CDS 25.0%
!! GTTAATGATGGAACTTATAT+AGG - Chr3:86569070-86569089 MsG0380016685.01.T01:intron 25.0%
!!! ATTGTTAGTTTTGATGGTTT+TGG - Chr3:86570573-86570592 MsG0380016685.01.T01:CDS 25.0%
!!! TTTTGGAGTATTTTCAACAT+GGG - Chr3:86568983-86569002 MsG0380016685.01.T01:intron 25.0%
!!! TTTTTGGAGTATTTTCAACA+TGG - Chr3:86568982-86569001 MsG0380016685.01.T01:intron 25.0%
AGAAAGAAAAGAGGAATTGT+GGG - Chr3:86569430-86569449 MsG0380016685.01.T01:intron 30.0%
AGTAAAGTTATTCGTGATGA+TGG - Chr3:86569148-86569167 MsG0380016685.01.T01:intron 30.0%
CAAAGAATTATCTAAGCTGT+AGG - Chr3:86569775-86569794 MsG0380016685.01.T01:CDS 30.0%
CTGTTCTTGGATCTATTATA+TGG - Chr3:86569467-86569486 MsG0380016685.01.T01:intron 30.0%
GATTAAACATAAACATGGCA+AGG - Chr3:86569510-86569529 MsG0380016685.01.T01:intron 30.0%
GTTCTTGGATCTATTATATG+GGG - Chr3:86569469-86569488 MsG0380016685.01.T01:intron 30.0%
GTTGAACAATGTGTTCTATT+GGG - Chr3:86569348-86569367 MsG0380016685.01.T01:intron 30.0%
TAAGTTCCTTTACGATTCAT+GGG + Chr3:86568953-86568972 None:intergenic 30.0%
TAGAAAGAAAAGAGGAATTG+TGG - Chr3:86569429-86569448 MsG0380016685.01.T01:intron 30.0%
TGGAACTTATATAGGTTTCA+TGG - Chr3:86569078-86569097 MsG0380016685.01.T01:intron 30.0%
TTAGTGATTAGCATTTCTTG+TGG - Chr3:86570255-86570274 MsG0380016685.01.T01:CDS 30.0%
TTGAACAATGTGTTCTATTG+GGG - Chr3:86569349-86569368 MsG0380016685.01.T01:intron 30.0%
TTGCTCCTTCAAATAACAAT+GGG - Chr3:86570641-86570660 MsG0380016685.01.T01:CDS 30.0%
!! ACTGATTTTTACACATACAC+AGG - Chr3:86570422-86570441 MsG0380016685.01.T01:CDS 30.0%
!! AGTTTAGTTTGAGAACAAGA+GGG - Chr3:86569326-86569345 MsG0380016685.01.T01:intron 30.0%
!!! GTATTTTTCTTTTGGGTTGT+TGG - Chr3:86569582-86569601 MsG0380016685.01.T01:intron 30.0%
!!! TCCCTTATTGTTAGTTTTGA+TGG - Chr3:86570567-86570586 MsG0380016685.01.T01:CDS 30.0%
AGGTACACTGGATTCTATAA+AGG - Chr3:86570442-86570461 MsG0380016685.01.T01:CDS 35.0%
ATAAAGGAATACAGAGTGCA+GGG - Chr3:86570458-86570477 MsG0380016685.01.T01:CDS 35.0%
CACAAATGATAGGGTCAATT+GGG - Chr3:86569374-86569393 MsG0380016685.01.T01:intron 35.0%
CAGTACTAGTAGTACTTCAA+TGG + Chr3:86570406-86570425 None:intergenic 35.0%
GGTTGAACAATGTGTTCTAT+TGG - Chr3:86569347-86569366 MsG0380016685.01.T01:intron 35.0%
GTAAGTTCCTTTACGATTCA+TGG + Chr3:86568954-86568973 None:intergenic 35.0%
GTTGCTCCTTCAAATAACAA+TGG - Chr3:86570640-86570659 MsG0380016685.01.T01:CDS 35.0%
TATAAAGGAATACAGAGTGC+AGG - Chr3:86570457-86570476 MsG0380016685.01.T01:CDS 35.0%
TCACGAATAACTTTACTAGC+AGG + Chr3:86569145-86569164 None:intergenic 35.0%
TGTTTCAGAGTATGGTTTAC+TGG - Chr3:86569611-86569630 MsG0380016685.01.T01:intron 35.0%
TTAGCAACTAGCATTTCTTG+TGG - Chr3:86570337-86570356 MsG0380016685.01.T01:CDS 35.0%
TTCAATGCTCTTTCAGGAAT+GGG - Chr3:86568647-86568666 MsG0380016685.01.T01:CDS 35.0%
! TCATGGCTTTTATGTCACTA+GGG - Chr3:86569095-86569114 MsG0380016685.01.T01:intron 35.0%
! TTCATGGCTTTTATGTCACT+AGG - Chr3:86569094-86569113 MsG0380016685.01.T01:intron 35.0%
!! AAATTGATTAGCTTGTGAGC+AGG - Chr3:86569868-86569887 MsG0380016685.01.T01:CDS 35.0%
!! AATTGGGATTGGTTACACTA+TGG - Chr3:86569390-86569409 MsG0380016685.01.T01:intron 35.0%
!! ACAGACCCATTGTTATTTGA+AGG + Chr3:86570649-86570668 None:intergenic 35.0%
!! CAGTTTAGTTTGAGAACAAG+AGG - Chr3:86569325-86569344 MsG0380016685.01.T01:intron 35.0%
AAATGTTGCAACTGAGTGTG+TGG - Chr3:86569198-86569217 MsG0380016685.01.T01:intron 40.0%
AAATTACTAGACCAAGCTGC+AGG + Chr3:86569268-86569287 None:intergenic 40.0%
ACATAAACATGGCAAGGTCT+TGG - Chr3:86569516-86569535 MsG0380016685.01.T01:intron 40.0%
AGGAATTGTGGGAATTAGTG+TGG - Chr3:86569441-86569460 MsG0380016685.01.T01:intron 40.0%
AGTATGGTTTACTGGTCCAT+TGG - Chr3:86569619-86569638 MsG0380016685.01.T01:intron 40.0%
ATGATAGGGTCAATTGGGAT+TGG - Chr3:86569379-86569398 MsG0380016685.01.T01:intron 40.0%
CTTGGATCTATTATATGGGG+TGG - Chr3:86569472-86569491 MsG0380016685.01.T01:intron 40.0%
GAAAGAGAACAATGAGGAAG+AGG - Chr3:86570600-86570619 MsG0380016685.01.T01:CDS 40.0%
GCACAAATGATAGGGTCAAT+TGG - Chr3:86569373-86569392 MsG0380016685.01.T01:intron 40.0%
GGATGCTATGTTTCAGAGTA+TGG - Chr3:86569603-86569622 MsG0380016685.01.T01:intron 40.0%
GTTCAATGCTCTTTCAGGAA+TGG - Chr3:86568646-86568665 MsG0380016685.01.T01:CDS 40.0%
TAAAGGAATACAGAGTGCAG+GGG - Chr3:86570459-86570478 MsG0380016685.01.T01:CDS 40.0%
TAACCATAACGTGTCTCCAA+TGG - Chr3:86570504-86570523 MsG0380016685.01.T01:CDS 40.0%
TACACAACCTTTGCAGTGTT+TGG - Chr3:86568722-86568741 MsG0380016685.01.T01:CDS 40.0%
TAGGATACCAAACACTGCAA+AGG + Chr3:86568732-86568751 None:intergenic 40.0%
TATCCACCCATGAATCGTAA+AGG - Chr3:86568944-86568963 MsG0380016685.01.T01:intron 40.0%
TATTATATGGGGTGGTGCAT+TGG - Chr3:86569480-86569499 MsG0380016685.01.T01:intron 40.0%
TCAACTTATGTACTCTACGC+TGG - Chr3:86568806-86568825 MsG0380016685.01.T01:CDS 40.0%
TGCAAAGGTTGTGTAAAGTG+CGG + Chr3:86568717-86568736 None:intergenic 40.0%
TTACACATACACAGGTACAC+TGG - Chr3:86570430-86570449 MsG0380016685.01.T01:CDS 40.0%
TTCACTATCAACTGTGCCAT+TGG + Chr3:86570523-86570542 None:intergenic 40.0%
TTGACGCATGAGTACCAAAA+TGG - Chr3:86570016-86570035 MsG0380016685.01.T01:CDS 40.0%
TTGAGTCACAGTTGCAGTTA+CGG - Chr3:86569895-86569914 MsG0380016685.01.T01:CDS 40.0%
TTTGCAGTGTTTGGTATCCT+AGG - Chr3:86568731-86568750 MsG0380016685.01.T01:CDS 40.0%
! AAAATGGTGGGACCATTTCA+CGG - Chr3:86570032-86570051 MsG0380016685.01.T01:CDS 40.0%
! ATTAGTGTGGTTGCTGTTCT+TGG - Chr3:86569454-86569473 MsG0380016685.01.T01:intron 40.0%
! ATTGGGGAGCACAAATGATA+GGG - Chr3:86569365-86569384 MsG0380016685.01.T01:intron 40.0%
! TATTGGGGAGCACAAATGAT+AGG - Chr3:86569364-86569383 MsG0380016685.01.T01:intron 40.0%
! TGGCAAGGTCTTGGATTTTA+AGG - Chr3:86569525-86569544 MsG0380016685.01.T01:intron 40.0%
!! ATGACTCTGAAGTTCTTAGC+AGG - Chr3:86569653-86569672 MsG0380016685.01.T01:CDS 40.0%
!! ATTTTGGTACTCATGCGTCA+AGG + Chr3:86570017-86570036 None:intergenic 40.0%
!! CAAGCTTTTGCTATAGTTGC+CGG - Chr3:86568860-86568879 MsG0380016685.01.T01:intron 40.0%
!! GGCACAGTTGATAGTGAATT+GGG - Chr3:86570525-86570544 MsG0380016685.01.T01:CDS 40.0%
!! GTCTTGGATTTTAAGGAGTC+TGG - Chr3:86569532-86569551 MsG0380016685.01.T01:intron 40.0%
!! TGGAGTATTTTCAACATGGG+TGG - Chr3:86568986-86569005 MsG0380016685.01.T01:intron 40.0%
!! TGGCACAGTTGATAGTGAAT+TGG - Chr3:86570524-86570543 MsG0380016685.01.T01:CDS 40.0%
!! TTCAACATGGGTGGTGTTAT+TGG - Chr3:86568995-86569014 MsG0380016685.01.T01:intron 40.0%
AAAGAGTTAAGTGAGGTCCG+AGG + Chr3:86568775-86568794 None:intergenic 45.0%
AATGCTCTTTCAGGAATGGG+AGG - Chr3:86568650-86568669 MsG0380016685.01.T01:CDS 45.0%
ACGCATGAGTACCAAAATGG+TGG - Chr3:86570019-86570038 MsG0380016685.01.T01:CDS 45.0%
AGAGAACAATGAGGAAGAGG+AGG - Chr3:86570603-86570622 MsG0380016685.01.T01:CDS 45.0%
CAAGCTGCTACGGTTAATGA+TGG - Chr3:86569058-86569077 MsG0380016685.01.T01:intron 45.0%
CATCGGAGCAGGTCTATTAT+GGG - Chr3:86568895-86568914 MsG0380016685.01.T01:intron 45.0%
CCTGCGAAAAGAGTTAAGTG+AGG + Chr3:86568782-86568801 None:intergenic 45.0%
CGCATGAGTACCAAAATGGT+GGG - Chr3:86570020-86570039 MsG0380016685.01.T01:CDS 45.0%
CGGCAACTATAGCAAAAGCT+TGG + Chr3:86568862-86568881 None:intergenic 45.0%
GGCTGTGAAAGAGAACAATG+AGG - Chr3:86570594-86570613 MsG0380016685.01.T01:CDS 45.0%
GGTTGTGTAAAGTGCGGTTA+AGG + Chr3:86568711-86568730 None:intergenic 45.0%
GTCATTAGCTAGAGCTCCAA+TGG + Chr3:86569638-86569657 None:intergenic 45.0%
GTTCCTTTACGATTCATGGG+TGG + Chr3:86568950-86568969 None:intergenic 45.0%
TTCTCATGATTCCTGCAGCT+TGG - Chr3:86569254-86569273 MsG0380016685.01.T01:intron 45.0%
! CACGTGCACTAAAGCTCTAA+CGG + Chr3:86570060-86570079 None:intergenic 45.0%
! CCTCACTTAACTCTTTTCGC+AGG - Chr3:86568779-86568798 MsG0380016685.01.T01:CDS 45.0%
! GAAGGAGCAACTTGTTTGAC+AGG + Chr3:86570631-86570650 None:intergenic 45.0%
! GTGAAATGGTCCCACCATTT+TGG + Chr3:86570033-86570052 None:intergenic 45.0%
! GTTAGAGCTTTAGTGCACGT+GGG - Chr3:86570059-86570078 MsG0380016685.01.T01:CDS 45.0%
!! AACATGGGTGGTGTTATTGG+TGG - Chr3:86568998-86569017 MsG0380016685.01.T01:intron 45.0%
!!! GAGTCTGGTTCTGATTTTGC+TGG - Chr3:86569547-86569566 MsG0380016685.01.T01:intron 45.0%
!! ATTTATTAACAAATAAAAAA+AGG + Chr3:86570089-86570108 None:intergenic 5.0%
GCAGTGTTTGGTATCCTAGG+TGG - Chr3:86568734-86568753 MsG0380016685.01.T01:CDS 50.0%
GCATCGGAGCAGGTCTATTA+TGG - Chr3:86568894-86568913 MsG0380016685.01.T01:intron 50.0%
GGTGGCATCTACAACATCCT+CGG - Chr3:86568755-86568774 MsG0380016685.01.T01:CDS 50.0%
GTGTTTGGTATCCTAGGTGG+TGG - Chr3:86568737-86568756 MsG0380016685.01.T01:CDS 50.0%
TGTTGTAGATGCCACCACCT+AGG + Chr3:86568751-86568770 None:intergenic 50.0%
! CGTTAGAGCTTTAGTGCACG+TGG - Chr3:86570058-86570077 MsG0380016685.01.T01:CDS 50.0%
! GCTCTAACGGATCCGTGAAA+TGG + Chr3:86570047-86570066 None:intergenic 50.0%
! GGTCTATTATGGGCTGCACA+AGG - Chr3:86568905-86568924 MsG0380016685.01.T01:intron 50.0%
! GTGCCATTGGAGACACGTTA+TGG + Chr3:86570510-86570529 None:intergenic 50.0%
!! AAGTGCGGTTAAGGCGTTGT+TGG + Chr3:86568702-86568721 None:intergenic 50.0%
CCGTAGCAGCTTGATCACCA+CGG + Chr3:86569051-86569070 None:intergenic 55.0%
CCGTGGTGATCAAGCTGCTA+CGG - Chr3:86569048-86569067 MsG0380016685.01.T01:intron 55.0%
CTTTCAGGAATGGGAGGTGG+TGG - Chr3:86568656-86568675 MsG0380016685.01.T01:CDS 55.0%
GCTCTTTCAGGAATGGGAGG+TGG - Chr3:86568653-86568672 MsG0380016685.01.T01:CDS 55.0%
ACCTGCTCCGATGCCGAGAA+GGG + Chr3:86568888-86568907 None:intergenic 60.0%
ATAGTTGCCGGCGCCCTTCT+CGG - Chr3:86568872-86568891 MsG0380016685.01.T01:intron 60.0%
GACCTGCTCCGATGCCGAGA+AGG + Chr3:86568889-86568908 None:intergenic 65.0%
GTGCAGGGGCTGCAGTTGCA+TGG - Chr3:86570473-86570492 MsG0380016685.01.T01:CDS 65.0%
! GCCCTTCTCGGCATCGGAGC+AGG - Chr3:86568884-86568903 MsG0380016685.01.T01:intron 70.0%
! TCCGATGCCGAGAAGGGCGC+CGG + Chr3:86568882-86568901 None:intergenic 70.0%
GCCGGCGCCCTTCTCGGCAT+CGG - Chr3:86568878-86568897 MsG0380016685.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 86568644 86570675 86568644 ID=MsG0380016685.01;Name=MsG0380016685.01
Chr3 mRNA 86568644 86570675 86568644 ID=MsG0380016685.01.T01;Parent=MsG0380016685.01;Name=MsG0380016685.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|2|0|420
Chr3 exon 86569645 86570675 86569645 ID=MsG0380016685.01.T01:exon:21901;Parent=MsG0380016685.01.T01
Chr3 exon 86568644 86568875 86568644 ID=MsG0380016685.01.T01:exon:21900;Parent=MsG0380016685.01.T01
Chr3 CDS 86569645 86570675 86569645 ID=MsG0380016685.01.T01:cds;Parent=MsG0380016685.01.T01
Chr3 CDS 86568644 86568875 86568644 ID=MsG0380016685.01.T01:cds;Parent=MsG0380016685.01.T01
Gene Sequence

>MsG0380016685.01.T01

ATGTTCAATGCTCTTTCAGGAATGGGAGGTGGTGGTCAAGTCAATGCAACAGCTTCCAACAACGCCTTAACCGCACTTTACACAACCTTTGCAGTGTTTGGTATCCTAGGTGGTGGCATCTACAACATCCTCGGACCTCACTTAACTCTTTTCGCAGGTTGTTCAACTTATGTACTCTACGCTGGTTCTTTCCTTTACTATAATCATAAACAACACCAAGCTTTTGCTATAGTTGCCGGCGCCCTTCTCGGCATCGGAGCAGGTCTATTATGGGCTGCACAAGGTGCTATTATGACATCTTATCCACCCATGAATCGTAAAGGAACTTACATTTCAATTTTTTGGAGTATTTTCAACATGGGTGGTGTTATTGGTGGTTTGATTCCTTTTATTCTTAATTACAACCGTGGTGATCAAGCTGCTACGGTTAATGATGGAACTTATATAGGTTTCATGGCTTTTATGTCACTAGGGACTGTTTTGTCTCTAACTATTTTACCTGCTAGTAAAGTTATTCGTGATGATGGAACAAAGTGTACAAATATGTTGTACTCAAATGTTGCAACTGAGTGTGTGGAGATTCTTAAATTGTTCTATAATTGGAAGATGCTTCTCATGATTCCTGCAGCTTGGTCTAGTAATTTCTTTTACACATACCAGTTTAATCATGTTAATAAGACACAGTTTAGTTTGAGAACAAGAGGGTTGAACAATGTGTTCTATTGGGGAGCACAAATGATAGGGTCAATTGGGATTGGTTACACTATGGATTTCAGTTTTAAGAGTAGAAAGAAAAGAGGAATTGTGGGAATTAGTGTGGTTGCTGTTCTTGGATCTATTATATGGGGTGGTGCATTGGCTAATCAGATTAAACATAAACATGGCAAGGTCTTGGATTTTAAGGAGTCTGGTTCTGATTTTGCTGGTCCTTTTGTTTTGTATTTTTCTTTTGGGTTGTTGGATGCTATGTTTCAGAGTATGGTTTACTGGTCCATTGGAGCTCTAGCTAATGACTCTGAAGTTCTTAGCAGGTACACTGGATTCTATAAAGGAATACAGAGTGCAGGGGCTGCAGTTGCATGGCAAATTGATAACCATAACGTGTCTCCAATGGCACAGTTGATAGTGAATTGGGTACTAACTACATTAAGTTATCCCTTATTGTTAGTTTTGATGGTTTTGGCTGTGAAAGAGAACAATGAGGAAGAGGAGGAACCTGTCAAACAAGTTGCTCCTTCAAATAACAATGGGTCTGTCCATTGA
Protein sequence

>MsG0380016685.01.T01

MFNALSGMGGGGQVNATASNNALTALYTTFAVFGILGGGIYNILGPHLTLFAGCSTYVLYAGSFLYYNHKQHQAFAIVAGALLGIGAGLLWAAQGAIMTSYPPMNRKGTYISIFWSIFNMGGVIGGLIPFILNYNRGDQAATVNDGTYIGFMAFMSLGTVLSLTILPASKVIRDDGTKCTNMLYSNVATECVEILKLFYNWKMLLMIPAAWSSNFFYTYQFNHVNKTQFSLRTRGLNNVFYWGAQMIGSIGIGYTMDFSFKSRKKRGIVGISVVAVLGSIIWGGALANQIKHKHGKVLDFKESGSDFAGPFVLYFSFGLLDAMFQSMVYWSIGALANDSEVLSRYTGFYKGIQSAGAAVAWQIDNHNVSPMAQLIVNWVLTTLSYPLLLVLMVLAVKENNEEEEEPVKQVAPSNNNGSVH*