Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016686.01.T01 | XP_003602432.1 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0 | 903 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016686.01.T01 | Q56WD3 | 67.749 | 431 | 134 | 2 | 16 | 442 | 19 | 448 | 0 | 614 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016686.01.T01 | G7J9P1 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 903 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048845.01 | MsG0380016686.01 | 0.834038 | 3.775857e-56 | 4.427392e-53 |
MsG0080049130.01 | MsG0380016686.01 | 0.814177 | 1.759639e-51 | 1.172351e-48 |
MsG0180000246.01 | MsG0380016686.01 | 0.803154 | 3.991944e-49 | 1.991486e-46 |
MsG0180000646.01 | MsG0380016686.01 | 0.813679 | 2.265920e-51 | 1.489443e-48 |
MsG0180000647.01 | MsG0380016686.01 | 0.806723 | 7.161187e-50 | 3.915390e-47 |
MsG0180000843.01 | MsG0380016686.01 | 0.834453 | 2.971827e-56 | 3.528467e-53 |
MsG0180001064.01 | MsG0380016686.01 | 0.802608 | 5.175858e-49 | 2.546329e-46 |
MsG0180001100.01 | MsG0380016686.01 | 0.819736 | 9.932459e-53 | 7.707125e-50 |
MsG0180001371.01 | MsG0380016686.01 | 0.818111 | 2.324617e-52 | 1.724408e-49 |
MsG0180003316.01 | MsG0380016686.01 | 0.828973 | 6.672871e-55 | 6.736273e-52 |
MsG0180003633.01 | MsG0380016686.01 | 0.811122 | 8.200144e-51 | 5.033715e-48 |
MsG0180004103.01 | MsG0380016686.01 | 0.825316 | 5.009502e-54 | 4.550377e-51 |
MsG0180004246.01 | MsG0380016686.01 | 0.804094 | 2.548123e-49 | 1.302270e-46 |
MsG0180004934.01 | MsG0380016686.01 | 0.846246 | 2.450343e-59 | 4.191130e-56 |
MsG0180005039.01 | MsG0380016686.01 | 0.803777 | 2.964969e-49 | 1.502994e-46 |
MsG0180005803.01 | MsG0380016686.01 | 0.837410 | 5.284594e-57 | 6.858185e-54 |
MsG0180005807.01 | MsG0380016686.01 | 0.833834 | 4.245921e-56 | 4.948600e-53 |
MsG0180005821.01 | MsG0380016686.01 | 0.814908 | 1.212572e-51 | 8.239473e-49 |
MsG0180005969.01 | MsG0380016686.01 | 0.809688 | 1.671737e-50 | 9.881022e-48 |
MsG0280010611.01 | MsG0380016686.01 | 0.803906 | 2.787381e-49 | 1.417753e-46 |
MsG0280010904.01 | MsG0380016686.01 | 0.840552 | 8.116389e-58 | 1.160255e-54 |
MsG0280010975.01 | MsG0380016686.01 | 0.808821 | 2.565738e-50 | 1.481753e-47 |
MsG0280011270.01 | MsG0380016686.01 | 0.818630 | 1.773248e-52 | 1.334343e-49 |
MsG0280011411.01 | MsG0380016686.01 | 0.846474 | 2.123395e-59 | 3.659485e-56 |
MsG0380014624.01 | MsG0380016686.01 | 0.818568 | 1.831508e-52 | 1.375832e-49 |
MsG0380015501.01 | MsG0380016686.01 | 0.800281 | 1.551403e-48 | 7.195182e-46 |
MsG0380016284.01 | MsG0380016686.01 | 0.829788 | 4.232142e-55 | 4.376570e-52 |
MsG0380016527.01 | MsG0380016686.01 | 0.800471 | 1.418943e-48 | 6.612384e-46 |
MsG0380016686.01 | MsG0380016751.01 | 0.803929 | 2.756982e-49 | 1.403142e-46 |
MsG0380016686.01 | MsG0380016762.01 | 0.848198 | 7.139245e-60 | 1.299891e-56 |
MsG0380016686.01 | MsG0380017033.01 | 0.801879 | 7.309459e-49 | 3.530114e-46 |
MsG0380016686.01 | MsG0380018069.01 | 0.804435 | 2.162808e-49 | 1.115062e-46 |
MsG0380016686.01 | MsG0480018232.01 | 0.834925 | 2.260163e-56 | 2.721734e-53 |
MsG0380016686.01 | MsG0480018324.01 | 0.804764 | 1.846650e-49 | 9.602298e-47 |
MsG0380016686.01 | MsG0480018848.01 | 0.835640 | 1.491365e-56 | 1.834716e-53 |
MsG0380016686.01 | MsG0480019971.01 | 0.807740 | 4.360613e-50 | 2.448000e-47 |
MsG0380016686.01 | MsG0480020783.01 | 0.817902 | 2.591888e-52 | 1.911650e-49 |
MsG0380016686.01 | MsG0480021060.01 | 0.802096 | 6.597754e-49 | 3.203865e-46 |
MsG0380016686.01 | MsG0480021207.01 | 0.840293 | 9.490632e-58 | 1.345735e-54 |
MsG0380016686.01 | MsG0480021406.01 | 0.808717 | 2.699429e-50 | 1.554680e-47 |
MsG0380016686.01 | MsG0480022260.01 | 0.806892 | 6.596142e-50 | 3.622173e-47 |
MsG0380016686.01 | MsG0480022537.01 | 0.837258 | 5.778299e-57 | 7.463864e-54 |
MsG0380016686.01 | MsG0480022617.01 | 0.849998 | 2.255235e-60 | 4.354411e-57 |
MsG0380016686.01 | MsG0480022624.01 | 0.803551 | 3.303619e-49 | 1.665044e-46 |
MsG0380016686.01 | MsG0480022918.01 | 0.829216 | 5.828677e-55 | 5.927206e-52 |
MsG0380016686.01 | MsG0480023565.01 | 0.837434 | 5.210825e-57 | 6.767812e-54 |
MsG0380016686.01 | MsG0480023641.01 | 0.810444 | 1.149117e-50 | 6.927750e-48 |
MsG0380016686.01 | MsG0480023845.01 | 0.804843 | 1.778391e-49 | 9.266265e-47 |
MsG0380016686.01 | MsG0480023990.01 | 0.810752 | 9.857880e-51 | 5.992419e-48 |
MsG0380016686.01 | MsG0580024679.01 | 0.809705 | 1.657966e-50 | 9.803960e-48 |
MsG0380016686.01 | MsG0580024717.01 | 0.814677 | 1.364023e-51 | 9.211664e-49 |
MsG0380016686.01 | MsG0580024873.01 | 0.810688 | 1.017790e-50 | 6.176297e-48 |
MsG0380016686.01 | MsG0580025845.01 | 0.805535 | 1.273904e-49 | 6.756285e-47 |
MsG0380016686.01 | MsG0580025906.01 | 0.812954 | 3.269194e-51 | 2.106941e-48 |
MsG0380016686.01 | MsG0580027082.01 | 0.812805 | 3.524608e-51 | 2.262566e-48 |
MsG0380016686.01 | MsG0580027236.01 | 0.816576 | 5.151180e-52 | 3.663803e-49 |
MsG0380016686.01 | MsG0580028024.01 | 0.827255 | 1.730999e-54 | 1.662295e-51 |
MsG0380016686.01 | MsG0580028353.01 | 0.813802 | 2.128348e-51 | 1.403706e-48 |
MsG0380016686.01 | MsG0580028723.01 | 0.825841 | 3.761677e-54 | 3.468567e-51 |
MsG0380016686.01 | MsG0580028925.01 | 0.853316 | 2.590255e-61 | 5.573892e-58 |
MsG0380016686.01 | MsG0580029276.01 | 0.807374 | 5.214825e-50 | 2.899709e-47 |
MsG0380016686.01 | MsG0580029414.01 | 0.808016 | 3.808929e-50 | 2.153778e-47 |
MsG0380016686.01 | MsG0580029912.01 | 0.827090 | 1.895003e-54 | 1.810975e-51 |
MsG0380016686.01 | MsG0580029967.01 | 0.812752 | 3.619155e-51 | 2.320190e-48 |
MsG0380016686.01 | MsG0680030464.01 | 0.823773 | 1.156580e-53 | 1.005437e-50 |
MsG0380016686.01 | MsG0680030680.01 | 0.811842 | 5.719974e-51 | 3.578646e-48 |
MsG0380016686.01 | MsG0680032006.01 | 0.818094 | 2.344965e-52 | 1.738599e-49 |
MsG0380016686.01 | MsG0680032254.01 | 0.828173 | 1.041298e-54 | 1.027088e-51 |
MsG0380016686.01 | MsG0680032413.01 | 0.815513 | 8.894983e-52 | 6.145561e-49 |
MsG0380016686.01 | MsG0680035307.01 | 0.818396 | 2.003238e-52 | 1.497874e-49 |
MsG0380016686.01 | MsG0680035308.01 | 0.839398 | 1.623255e-57 | 2.239055e-54 |
MsG0380016686.01 | MsG0680035664.01 | 0.800027 | 1.746842e-48 | 8.049392e-46 |
MsG0380016686.01 | MsG0780037946.01 | 0.823470 | 1.361386e-53 | 1.173220e-50 |
MsG0380016686.01 | MsG0780039233.01 | 0.818761 | 1.655945e-52 | 1.250670e-49 |
MsG0380016686.01 | MsG0780039795.01 | 0.812345 | 4.442534e-51 | 2.817726e-48 |
MsG0380016686.01 | MsG0780039975.01 | 0.835368 | 1.747743e-56 | 2.132903e-53 |
MsG0380016686.01 | MsG0780040278.01 | 0.807942 | 3.950148e-50 | 2.229230e-47 |
MsG0380016686.01 | MsG0780041272.01 | 0.813134 | 2.984792e-51 | 1.933022e-48 |
MsG0380016686.01 | MsG0780041302.01 | 0.820758 | 5.792310e-53 | 4.623974e-50 |
MsG0380016686.01 | MsG0880042256.01 | 0.804065 | 2.582655e-49 | 1.319014e-46 |
MsG0380016686.01 | MsG0880042343.01 | 0.822087 | 2.857498e-53 | 2.367793e-50 |
MsG0380016686.01 | MsG0880042690.01 | 0.808329 | 3.267259e-50 | 1.862912e-47 |
MsG0380016686.01 | MsG0880043009.01 | 0.823982 | 1.033053e-53 | 9.032583e-51 |
MsG0380016686.01 | MsG0880043235.01 | 0.813581 | 2.381355e-51 | 1.561160e-48 |
MsG0380016686.01 | MsG0880043250.01 | 0.830580 | 2.710196e-55 | 2.867178e-52 |
MsG0380016686.01 | MsG0880044105.01 | 0.802943 | 4.413277e-49 | 2.189762e-46 |
MsG0380016686.01 | MsG0880044538.01 | 0.819653 | 1.037278e-52 | 8.030246e-50 |
MsG0380016686.01 | MsG0880044884.01 | 0.838670 | 2.505087e-57 | 3.379137e-54 |
MsG0380016686.01 | MsG0880045044.01 | 0.809740 | 1.629965e-50 | 9.647471e-48 |
MsG0380016686.01 | MsG0880045223.01 | 0.816133 | 6.471730e-52 | 4.547621e-49 |
MsG0380016686.01 | MsG0880045668.01 | 0.813914 | 2.011360e-51 | 1.330512e-48 |
MsG0380016686.01 | MsG0880047111.01 | 0.830636 | 2.626777e-55 | 2.783653e-52 |
MsG0380016686.01 | MsG0880047156.01 | 0.846442 | 2.165846e-59 | 3.728770e-56 |
MsG0380016686.01 | MsG0880047160.01 | 0.812653 | 3.805173e-51 | 2.433074e-48 |
MsG0280008101.01 | MsG0380016686.01 | 0.809310 | 2.016143e-50 | 1.179688e-47 |
MsG0280008419.01 | MsG0380016686.01 | 0.807405 | 5.136984e-50 | 2.858832e-47 |
MsG0280009869.01 | MsG0380016686.01 | 0.811535 | 6.670788e-51 | 4.139860e-48 |
MsG0280010198.01 | MsG0380016686.01 | 0.808150 | 3.567209e-50 | 2.024337e-47 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0380016686.01 | MsG0380016685.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016686.01.T01 | MTR_3g093290 | 97.556 | 450 | 11 | 0 | 1 | 450 | 1 | 450 | 0.0 | 903 |
MsG0380016686.01.T01 | MTR_3g093270 | 93.541 | 449 | 28 | 1 | 3 | 450 | 2 | 450 | 0.0 | 846 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380016686.01.T01 | AT1G18010 | 67.749 | 431 | 134 | 2 | 16 | 442 | 19 | 448 | 0.0 | 614 |
MsG0380016686.01.T01 | AT1G18000 | 67.749 | 431 | 134 | 2 | 16 | 442 | 19 | 448 | 0.0 | 614 |
Find 97 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTTCACAAATCATCCTTAT+TGG | 0.164299 | 3:-86579091 | MsG0380016686.01.T01:CDS |
GGCATGTTCAATGCTCTTTC+AGG | 0.180358 | 3:-86579046 | MsG0380016686.01.T01:CDS |
AGATGCCATGTTTCAGAGTA+TGG | 0.258685 | 3:-86578084 | MsG0380016686.01.T01:CDS |
TGTTTCAGAGTATGGTTTAC+TGG | 0.266519 | 3:-86578076 | MsG0380016686.01.T01:CDS |
ATTAGTGTGGTTGCTATTCT+TGG | 0.268061 | 3:-86578233 | MsG0380016686.01.T01:CDS |
CTATTCTTGGATCTATTATA+TGG | 0.272979 | 3:-86578220 | MsG0380016686.01.T01:CDS |
TTTCACAAATCATCCTTATT+GGG | 0.293770 | 3:-86579090 | MsG0380016686.01.T01:CDS |
GCATCGGAGCTGGACTATTA+TGG | 0.301187 | 3:-86578793 | MsG0380016686.01.T01:CDS |
GTTAATGATGGAACTTATAT+AGG | 0.307736 | 3:-86578617 | MsG0380016686.01.T01:CDS |
TTCAACATGGGTGGTGTTAT+TGG | 0.313659 | 3:-86578692 | MsG0380016686.01.T01:CDS |
CGATTGTAATTAAGAATAAA+AGG | 0.315237 | 3:+86578659 | None:intergenic |
GTAAGTTCCTTTACGATTCA+TGG | 0.318909 | 3:+86578736 | None:intergenic |
TGGAACTTATATAGGTTTCA+TGG | 0.341520 | 3:-86578609 | MsG0380016686.01.T01:CDS |
AGGTACACAGGATTCTATAA+AGG | 0.355926 | 3:-86577630 | MsG0380016686.01.T01:CDS |
AGTATGGTTTACTGGTCTAT+TGG | 0.363404 | 3:-86578068 | MsG0380016686.01.T01:CDS |
GCTGTTCTCGGCATCGGAGC+TGG | 0.372968 | 3:-86578803 | MsG0380016686.01.T01:CDS |
ACATAAACATGGCAAGGTCT+TGG | 0.373279 | 3:-86578171 | MsG0380016686.01.T01:CDS |
TATTCTTGGATCTATTATAT+GGG | 0.375257 | 3:-86578219 | MsG0380016686.01.T01:CDS |
TATTGGGGAGCACAAATGAT+AGG | 0.383645 | 3:-86578323 | MsG0380016686.01.T01:CDS |
TTCTTAAATTGTTCTACAAT+TGG | 0.385721 | 3:-86578463 | MsG0380016686.01.T01:CDS |
TTCACAATCAACTGTGTCAT+TGG | 0.386175 | 3:+86577552 | None:intergenic |
TTCTCATGATTCCTGCTGCT+TGG | 0.392569 | 3:-86578433 | MsG0380016686.01.T01:CDS |
TATTATATGGGGTGGTGCAC+TGG | 0.396545 | 3:-86578207 | MsG0380016686.01.T01:CDS |
TCCGGTGCTGTTCTCGGCAT+CGG | 0.396725 | 3:-86578809 | MsG0380016686.01.T01:CDS |
AATTGGGATTGGATACACTA+TGG | 0.400852 | 3:-86578297 | MsG0380016686.01.T01:CDS |
TTCAATGCTCTTTCAGGAAT+GGG | 0.404295 | 3:-86579040 | MsG0380016686.01.T01:CDS |
TGACACAGTTGATTGTGAAT+TGG | 0.408150 | 3:-86577548 | MsG0380016686.01.T01:CDS |
GCACAAATGATAGGGTCAAT+TGG | 0.413131 | 3:-86578314 | MsG0380016686.01.T01:CDS |
GCTTGTGTAGAGTGCGGTTA+AGG | 0.415646 | 3:+86578979 | None:intergenic |
GTAGTTTCCGGTGCTGTTCT+CGG | 0.424731 | 3:-86578815 | MsG0380016686.01.T01:CDS |
TTACTGGTCTATTGGAGCAT+TGG | 0.434243 | 3:-86578060 | MsG0380016686.01.T01:CDS |
TTCAAGAGTAGAAAGAAAAG+AGG | 0.434777 | 3:-86578266 | MsG0380016686.01.T01:CDS |
TAGAAAGAAAAGAGGGATTG+TGG | 0.440451 | 3:-86578258 | MsG0380016686.01.T01:CDS |
CACAAATGATAGGGTCAATT+GGG | 0.440466 | 3:-86578313 | MsG0380016686.01.T01:CDS |
AGAAAGAAAAGAGGGATTGT+GGG | 0.444597 | 3:-86578257 | MsG0380016686.01.T01:CDS |
GACACAGTTGATTGTGAATT+GGG | 0.445991 | 3:-86577547 | MsG0380016686.01.T01:CDS |
ACTAAGCTATCCGTTATTGT+TGG | 0.457774 | 3:-86577514 | MsG0380016686.01.T01:CDS |
GGTACACAGGATTCTATAAA+GGG | 0.462985 | 3:-86577629 | MsG0380016686.01.T01:CDS |
CTTTCAGGAATGGGTGGTGG+TGG | 0.463947 | 3:-86579031 | MsG0380016686.01.T01:CDS |
AGTAAAGTTATTCGTGATGA+TGG | 0.467385 | 3:-86578539 | MsG0380016686.01.T01:CDS |
TCCTCCTATGTCCTTTACAC+TGG | 0.471720 | 3:-86578881 | MsG0380016686.01.T01:CDS |
GTTCAATGCTCTTTCAGGAA+TGG | 0.477707 | 3:-86579041 | MsG0380016686.01.T01:CDS |
AGATGTCATAATAGCACCTT+GGG | 0.481690 | 3:+86578766 | None:intergenic |
ATCATTAAAACCAACAATAA+CGG | 0.482912 | 3:+86577504 | None:intergenic |
TCAAGAGTAGAAAGAAAAGA+GGG | 0.484800 | 3:-86578265 | MsG0380016686.01.T01:CDS |
ACAAATCATCCTTATTGGGT+TGG | 0.488006 | 3:-86579086 | MsG0380016686.01.T01:CDS |
ATGATAGGGTCAATTGGGAT+TGG | 0.489200 | 3:-86578308 | MsG0380016686.01.T01:CDS |
AACATGGGTGGTGTTATTGG+TGG | 0.496677 | 3:-86578689 | MsG0380016686.01.T01:CDS |
GAAAGAGCATTGAACATGCC+TGG | 0.498347 | 3:+86579049 | None:intergenic |
ATAAGGATGATTTGTGAAAG+AGG | 0.505507 | 3:+86579094 | None:intergenic |
GAGTGCGGTTAAGGCGTTGT+TGG | 0.510267 | 3:+86578988 | None:intergenic |
TAAGTTCCTTTACGATTCAT+GGG | 0.510847 | 3:+86578737 | None:intergenic |
TTCCTTTACGATTCATGGGT+GGG | 0.515970 | 3:+86578741 | None:intergenic |
GCTCTTTCAGGAATGGGTGG+TGG | 0.525680 | 3:-86579034 | MsG0380016686.01.T01:CDS |
CTTGGATCTATTATATGGGG+TGG | 0.527962 | 3:-86578215 | MsG0380016686.01.T01:CDS |
AGAGGAAAGAACCAGTGTAA+AGG | 0.529052 | 3:+86578870 | None:intergenic |
TCCGATGCCGAGAACAGCAC+CGG | 0.530799 | 3:+86578808 | None:intergenic |
ATTGGGGAGCACAAATGATA+GGG | 0.533554 | 3:-86578322 | MsG0380016686.01.T01:CDS |
CATCATTAACAGTAGCAGCT+TGG | 0.533655 | 3:+86578630 | None:intergenic |
GTTGTTTATGATTGTAGTAG+AGG | 0.539382 | 3:+86578852 | None:intergenic |
ATGACTCTGAAGTTCTTAGC+AGG | 0.541389 | 3:-86578034 | MsG0380016686.01.T01:intron |
ACCTGCGAAAAGAGTTAAGT+GGG | 0.545077 | 3:+86578907 | None:intergenic |
TTTATTCTTAATTACAATCG+TGG | 0.549060 | 3:-86578656 | MsG0380016686.01.T01:CDS |
CAAGCTGCTACTGTTAATGA+TGG | 0.549832 | 3:-86578629 | MsG0380016686.01.T01:CDS |
CAGGTTAGTTTGAGAACAAG+AGG | 0.552749 | 3:-86578362 | MsG0380016686.01.T01:CDS |
ATTCTTGGATCTATTATATG+GGG | 0.555375 | 3:-86578218 | MsG0380016686.01.T01:CDS |
TACCCACCCATGAATCGTAA+AGG | 0.557859 | 3:-86578743 | MsG0380016686.01.T01:CDS |
TGTTCAACGACACCACCCAT+TGG | 0.559220 | 3:+86579181 | None:intergenic |
TCACGAATAACTTTACTAGC+AGG | 0.559403 | 3:+86578545 | None:intergenic |
GTTCCTTTACGATTCATGGG+TGG | 0.571188 | 3:+86578740 | None:intergenic |
TATAAAGGGATACAAAGCGC+GGG | 0.581338 | 3:-86577615 | MsG0380016686.01.T01:CDS |
AGAACCAGTGTAAAGGACAT+AGG | 0.581796 | 3:+86578877 | None:intergenic |
AACCTGCGAAAAGAGTTAAG+TGG | 0.585770 | 3:+86578906 | None:intergenic |
AATGCTCTTTCAGGAATGGG+TGG | 0.595210 | 3:-86579037 | MsG0380016686.01.T01:CDS |
AAATTACTAGACCAAGCAGC+AGG | 0.595856 | 3:+86578422 | None:intergenic |
TAATCATGTTAATAAGACAC+AGG | 0.598174 | 3:-86578381 | MsG0380016686.01.T01:CDS |
AAGATGTCATAATAGCACCT+TGG | 0.600718 | 3:+86578765 | None:intergenic |
GATTAAACATAAACATGGCA+AGG | 0.600741 | 3:-86578177 | MsG0380016686.01.T01:CDS |
TGAGGTTTCCGGTGGTTGAG+TGG | 0.602501 | 3:+86579147 | None:intergenic |
AGAATCAGCCACTCAACCAC+CGG | 0.603694 | 3:-86579155 | MsG0380016686.01.T01:CDS |
GGTGGCATCTATAACATCCT+CGG | 0.603879 | 3:-86578932 | MsG0380016686.01.T01:CDS |
TGTTATAGATGCCACCACCT+AGG | 0.620884 | 3:+86578939 | None:intergenic |
AGGGATTGTGGGAATTAGTG+TGG | 0.623531 | 3:-86578246 | MsG0380016686.01.T01:CDS |
GGACTATTATGGAGTGCCCA+AGG | 0.624792 | 3:-86578782 | MsG0380016686.01.T01:CDS |
TTGGACTTACACAGGTACAC+AGG | 0.625881 | 3:-86577642 | MsG0380016686.01.T01:intron |
AAATGTTGCAACTGAGTGTG+TGG | 0.638201 | 3:-86578489 | MsG0380016686.01.T01:CDS |
ATAAAGGGATACAAAGCGCG+GGG | 0.639353 | 3:-86577614 | MsG0380016686.01.T01:CDS |
ACCAGTGTAAAGGACATAGG+AGG | 0.645176 | 3:+86578880 | None:intergenic |
AATCAGATTAAACATAAACA+TGG | 0.664350 | 3:-86578182 | MsG0380016686.01.T01:CDS |
AAAGAGTTAAGTGGGGTCCG+AGG | 0.668411 | 3:+86578915 | None:intergenic |
CTATAAAGGGATACAAAGCG+CGG | 0.671823 | 3:-86577616 | MsG0380016686.01.T01:CDS |
GTAAACCATACTCTGAAACA+TGG | 0.672850 | 3:+86578079 | None:intergenic |
AGGTTAGTTTGAGAACAAGA+GGG | 0.673209 | 3:-86578361 | MsG0380016686.01.T01:CDS |
TGTGAAGCTTGTGTAGAGTG+CGG | 0.751066 | 3:+86578973 | None:intergenic |
CCTGCGAAAAGAGTTAAGTG+GGG | 0.759382 | 3:+86578908 | None:intergenic |
TAAAGGGATACAAAGCGCGG+GGG | 0.777135 | 3:-86577613 | MsG0380016686.01.T01:CDS |
TGTGAAAGAGGACAATAACG+AGG | 0.786049 | 3:-86577475 | MsG0380016686.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAGAAAAATACAAAACAAA+AGG | + | Chr3:86578529-86578548 | None:intergenic | 15.0% |
!!! | TTGTTTTGTATTTTTCTTTT+GGG | - | Chr3:86578530-86578549 | MsG0380016686.01.T01:CDS | 15.0% |
!!! | TTTGTTTTGTATTTTTCTTT+TGG | - | Chr3:86578529-86578548 | MsG0380016686.01.T01:CDS | 15.0% |
!! | AATAATCCACAAAAAAATAC+TGG | + | Chr3:86578851-86578870 | None:intergenic | 20.0% |
!! | AATCAGATTAAACATAAACA+TGG | - | Chr3:86578460-86578479 | MsG0380016686.01.T01:CDS | 20.0% |
!! | ATCATTAAAACCAACAATAA+CGG | + | Chr3:86579141-86579160 | None:intergenic | 20.0% |
!! | CGATTGTAATTAAGAATAAA+AGG | + | Chr3:86577986-86578005 | None:intergenic | 20.0% |
!! | TATTCTTGGATCTATTATAT+GGG | - | Chr3:86578423-86578442 | MsG0380016686.01.T01:CDS | 20.0% |
!! | TGAAACTTCAAGAAAATATT+TGG | - | Chr3:86578785-86578804 | MsG0380016686.01.T01:CDS | 20.0% |
!! | TTCTTAAATTGTTCTACAAT+TGG | - | Chr3:86578179-86578198 | MsG0380016686.01.T01:CDS | 20.0% |
!! | TTTATTCTTAATTACAATCG+TGG | - | Chr3:86577986-86578005 | MsG0380016686.01.T01:intron | 20.0% |
!!! | ATTGTTGGTTTTAATGATTT+TGG | - | Chr3:86579143-86579162 | MsG0380016686.01.T01:CDS | 20.0% |
!!! | TAATTTGTAGTTTTAGTGAT+TGG | - | Chr3:86578908-86578927 | MsG0380016686.01.T01:CDS | 20.0% |
! | ATTCTTGGATCTATTATATG+GGG | - | Chr3:86578424-86578443 | MsG0380016686.01.T01:CDS | 25.0% |
! | ATTTCCAAATTTCAACTATC+AGG | + | Chr3:86578952-86578971 | None:intergenic | 25.0% |
! | CTATTCTTGGATCTATTATA+TGG | - | Chr3:86578422-86578441 | MsG0380016686.01.T01:CDS | 25.0% |
! | TAATCATGTTAATAAGACAC+AGG | - | Chr3:86578261-86578280 | MsG0380016686.01.T01:CDS | 25.0% |
! | TTTCACAAATCATCCTTATT+GGG | - | Chr3:86577552-86577571 | MsG0380016686.01.T01:CDS | 25.0% |
! | TTTCCAAATTTCAACTATCA+GGG | + | Chr3:86578951-86578970 | None:intergenic | 25.0% |
!! | GAACTTACATTTCAATTTTC+TGG | - | Chr3:86577921-86577940 | MsG0380016686.01.T01:intron | 25.0% |
!! | GTTAATGATGGAACTTATAT+AGG | - | Chr3:86578025-86578044 | MsG0380016686.01.T01:intron | 25.0% |
!!! | GTTGAACAATGTGTTTTATT+GGG | - | Chr3:86578303-86578322 | MsG0380016686.01.T01:CDS | 25.0% |
!!! | TATCAACCAGTATTTTTTTG+TGG | - | Chr3:86578842-86578861 | MsG0380016686.01.T01:CDS | 25.0% |
!!! | TTGAACAATGTGTTTTATTG+GGG | - | Chr3:86578304-86578323 | MsG0380016686.01.T01:CDS | 25.0% |
AAAAACAAACCAACCCAATA+AGG | + | Chr3:86577568-86577587 | None:intergenic | 30.0% | |
AGTAAAGTTATTCGTGATGA+TGG | - | Chr3:86578103-86578122 | MsG0380016686.01.T01:CDS | 30.0% | |
CTTTCACAAATCATCCTTAT+TGG | - | Chr3:86577551-86577570 | MsG0380016686.01.T01:CDS | 30.0% | |
GATTAAACATAAACATGGCA+AGG | - | Chr3:86578465-86578484 | MsG0380016686.01.T01:CDS | 30.0% | |
GTTGTTTATGATTGTAGTAG+AGG | + | Chr3:86577793-86577812 | None:intergenic | 30.0% | |
TAAGTTCCTTTACGATTCAT+GGG | + | Chr3:86577908-86577927 | None:intergenic | 30.0% | |
TATCCCTGATAGTTGAAATT+TGG | - | Chr3:86578945-86578964 | MsG0380016686.01.T01:CDS | 30.0% | |
TCAAGAGTAGAAAGAAAAGA+GGG | - | Chr3:86578377-86578396 | MsG0380016686.01.T01:CDS | 30.0% | |
TGGAACTTATATAGGTTTCA+TGG | - | Chr3:86578033-86578052 | MsG0380016686.01.T01:intron | 30.0% | |
TTAACTATTCCATTTGTTCG+TGG | - | Chr3:86578667-86578686 | MsG0380016686.01.T01:CDS | 30.0% | |
TTAGTGATTGGCATTTCATT+TGG | - | Chr3:86578920-86578939 | MsG0380016686.01.T01:CDS | 30.0% | |
TTCAAGAGTAGAAAGAAAAG+AGG | - | Chr3:86578376-86578395 | MsG0380016686.01.T01:CDS | 30.0% | |
! | AAGAAGTGATGAAGTTTTTG+AGG | + | Chr3:86577516-86577535 | None:intergenic | 30.0% |
! | ATAAGGATGATTTGTGAAAG+AGG | + | Chr3:86577551-86577570 | None:intergenic | 30.0% |
! | GGTTGAACAATGTGTTTTAT+TGG | - | Chr3:86578302-86578321 | MsG0380016686.01.T01:CDS | 30.0% |
! | TACACAAGCTTCACAATTTT+CGG | - | Chr3:86577677-86577696 | MsG0380016686.01.T01:intron | 30.0% |
!!! | AATGATTTTGGTTGTGAAAG+AGG | - | Chr3:86579155-86579174 | MsG0380016686.01.T01:CDS | 30.0% |
!!! | TTCTGGAGTATTTTCAACAT+GGG | - | Chr3:86577938-86577957 | MsG0380016686.01.T01:intron | 30.0% |
!!! | TTTCTGGAGTATTTTCAACA+TGG | - | Chr3:86577937-86577956 | MsG0380016686.01.T01:intron | 30.0% |
AAAATGCAACCACGAACAAA+TGG | + | Chr3:86578679-86578698 | None:intergenic | 35.0% | |
AAGATGTCATAATAGCACCT+TGG | + | Chr3:86577880-86577899 | None:intergenic | 35.0% | |
AATTGGGATTGGATACACTA+TGG | - | Chr3:86578345-86578364 | MsG0380016686.01.T01:CDS | 35.0% | |
ACAAATCATCCTTATTGGGT+TGG | - | Chr3:86577556-86577575 | MsG0380016686.01.T01:CDS | 35.0% | |
ACTAAGCTATCCGTTATTGT+TGG | - | Chr3:86579128-86579147 | MsG0380016686.01.T01:CDS | 35.0% | |
ACTAATGTTTGGACTTACAC+AGG | - | Chr3:86578992-86579011 | MsG0380016686.01.T01:CDS | 35.0% | |
AGAAAGAAAAGAGGGATTGT+GGG | - | Chr3:86578385-86578404 | MsG0380016686.01.T01:CDS | 35.0% | |
AGATGTCATAATAGCACCTT+GGG | + | Chr3:86577879-86577898 | None:intergenic | 35.0% | |
AGGTACACAGGATTCTATAA+AGG | - | Chr3:86579012-86579031 | MsG0380016686.01.T01:CDS | 35.0% | |
CACAAATGATAGGGTCAATT+GGG | - | Chr3:86578329-86578348 | MsG0380016686.01.T01:CDS | 35.0% | |
CTACTGCTAGTACTAATGTT+TGG | - | Chr3:86578981-86579000 | MsG0380016686.01.T01:CDS | 35.0% | |
GACACAGTTGATTGTGAATT+GGG | - | Chr3:86579095-86579114 | MsG0380016686.01.T01:CDS | 35.0% | |
GGTACACAGGATTCTATAAA+GGG | - | Chr3:86579013-86579032 | MsG0380016686.01.T01:CDS | 35.0% | |
GTAAGTTCCTTTACGATTCA+TGG | + | Chr3:86577909-86577928 | None:intergenic | 35.0% | |
TAGAAAGAAAAGAGGGATTG+TGG | - | Chr3:86578384-86578403 | MsG0380016686.01.T01:CDS | 35.0% | |
TCACGAATAACTTTACTAGC+AGG | + | Chr3:86578100-86578119 | None:intergenic | 35.0% | |
TGACACAGTTGATTGTGAAT+TGG | - | Chr3:86579094-86579113 | MsG0380016686.01.T01:CDS | 35.0% | |
TGTTTCAGAGTATGGTTTAC+TGG | - | Chr3:86578566-86578585 | MsG0380016686.01.T01:CDS | 35.0% | |
TTCAATGCTCTTTCAGGAAT+GGG | - | Chr3:86577602-86577621 | MsG0380016686.01.T01:CDS | 35.0% | |
TTCACAATCAACTGTGTCAT+TGG | + | Chr3:86579093-86579112 | None:intergenic | 35.0% | |
! | AGTATGGTTTACTGGTCTAT+TGG | - | Chr3:86578574-86578593 | MsG0380016686.01.T01:CDS | 35.0% |
! | ATTAGTGTGGTTGCTATTCT+TGG | - | Chr3:86578409-86578428 | MsG0380016686.01.T01:CDS | 35.0% |
! | TCATGGCTTTTATGTCACTA+GGG | - | Chr3:86578050-86578069 | MsG0380016686.01.T01:CDS | 35.0% |
! | TTCACAATTTTCGGAATCCT+AGG | - | Chr3:86577686-86577705 | MsG0380016686.01.T01:intron | 35.0% |
! | TTCATGGCTTTTATGTCACT+AGG | - | Chr3:86578049-86578068 | MsG0380016686.01.T01:CDS | 35.0% |
!! | AGGTTAGTTTGAGAACAAGA+GGG | - | Chr3:86578281-86578300 | MsG0380016686.01.T01:CDS | 35.0% |
!! | GTAAACCATACTCTGAAACA+TGG | + | Chr3:86578566-86578585 | None:intergenic | 35.0% |
!!! | GATGAAGTTTTTGAGGTTTC+CGG | + | Chr3:86577509-86577528 | None:intergenic | 35.0% |
!!! | TTGGTTTGTTTTTGTTGTCC+AGG | - | Chr3:86577575-86577594 | MsG0380016686.01.T01:CDS | 35.0% |
AAATGTTGCAACTGAGTGTG+TGG | - | Chr3:86578153-86578172 | MsG0380016686.01.T01:CDS | 40.0% | |
AAATTACTAGACCAAGCAGC+AGG | + | Chr3:86578223-86578242 | None:intergenic | 40.0% | |
AACCTGCGAAAAGAGTTAAG+TGG | + | Chr3:86577739-86577758 | None:intergenic | 40.0% | |
ACATAAACATGGCAAGGTCT+TGG | - | Chr3:86578471-86578490 | MsG0380016686.01.T01:CDS | 40.0% | |
ACCTGCGAAAAGAGTTAAGT+GGG | + | Chr3:86577738-86577757 | None:intergenic | 40.0% | |
AGAACCAGTGTAAAGGACAT+AGG | + | Chr3:86577768-86577787 | None:intergenic | 40.0% | |
AGAGGAAAGAACCAGTGTAA+AGG | + | Chr3:86577775-86577794 | None:intergenic | 40.0% | |
AGATGCCATGTTTCAGAGTA+TGG | - | Chr3:86578558-86578577 | MsG0380016686.01.T01:CDS | 40.0% | |
ATGATAGGGTCAATTGGGAT+TGG | - | Chr3:86578334-86578353 | MsG0380016686.01.T01:CDS | 40.0% | |
CAAGCTGCTACTGTTAATGA+TGG | - | Chr3:86578013-86578032 | MsG0380016686.01.T01:intron | 40.0% | |
CATCATTAACAGTAGCAGCT+TGG | + | Chr3:86578015-86578034 | None:intergenic | 40.0% | |
CTATAAAGGGATACAAAGCG+CGG | - | Chr3:86579026-86579045 | MsG0380016686.01.T01:CDS | 40.0% | |
CTTGGATCTATTATATGGGG+TGG | - | Chr3:86578427-86578446 | MsG0380016686.01.T01:CDS | 40.0% | |
GCACAAATGATAGGGTCAAT+TGG | - | Chr3:86578328-86578347 | MsG0380016686.01.T01:CDS | 40.0% | |
GTTCAATGCTCTTTCAGGAA+TGG | - | Chr3:86577601-86577620 | MsG0380016686.01.T01:CDS | 40.0% | |
TATAAAGGGATACAAAGCGC+GGG | - | Chr3:86579027-86579046 | MsG0380016686.01.T01:CDS | 40.0% | |
TGTGAAAGAGGACAATAACG+AGG | - | Chr3:86579167-86579186 | MsG0380016686.01.T01:CDS | 40.0% | |
TTCCTTTACGATTCATGGGT+GGG | + | Chr3:86577904-86577923 | None:intergenic | 40.0% | |
! | ACAATTTTCGGAATCCTAGG+TGG | - | Chr3:86577689-86577708 | MsG0380016686.01.T01:intron | 40.0% |
! | ATTGGGGAGCACAAATGATA+GGG | - | Chr3:86578320-86578339 | MsG0380016686.01.T01:CDS | 40.0% |
! | TATTGGGGAGCACAAATGAT+AGG | - | Chr3:86578319-86578338 | MsG0380016686.01.T01:CDS | 40.0% |
! | TGGCAAGGTCTTGGATTTTA+AGG | - | Chr3:86578480-86578499 | MsG0380016686.01.T01:CDS | 40.0% |
! | TTACTGGTCTATTGGAGCAT+TGG | - | Chr3:86578582-86578601 | MsG0380016686.01.T01:CDS | 40.0% |
!! | ATGACTCTGAAGTTCTTAGC+AGG | - | Chr3:86578608-86578627 | MsG0380016686.01.T01:CDS | 40.0% |
!! | CAAGCTTTTGCTGTAGTTTC+CGG | - | Chr3:86577815-86577834 | MsG0380016686.01.T01:intron | 40.0% |
!! | CAGGTTAGTTTGAGAACAAG+AGG | - | Chr3:86578280-86578299 | MsG0380016686.01.T01:CDS | 40.0% |
!! | GTCTTGGATTTTAAGGAGTC+TGG | - | Chr3:86578487-86578506 | MsG0380016686.01.T01:CDS | 40.0% |
!! | TGGAGTATTTTCAACATGGG+TGG | - | Chr3:86577941-86577960 | MsG0380016686.01.T01:intron | 40.0% |
!! | TTCAACATGGGTGGTGTTAT+TGG | - | Chr3:86577950-86577969 | MsG0380016686.01.T01:intron | 40.0% |
AATGCTCTTTCAGGAATGGG+TGG | - | Chr3:86577605-86577624 | MsG0380016686.01.T01:CDS | 45.0% | |
ACCAGTGTAAAGGACATAGG+AGG | + | Chr3:86577765-86577784 | None:intergenic | 45.0% | |
AGGGATTGTGGGAATTAGTG+TGG | - | Chr3:86578396-86578415 | MsG0380016686.01.T01:CDS | 45.0% | |
ATAAAGGGATACAAAGCGCG+GGG | - | Chr3:86579028-86579047 | MsG0380016686.01.T01:CDS | 45.0% | |
CCTGCGAAAAGAGTTAAGTG+GGG | + | Chr3:86577737-86577756 | None:intergenic | 45.0% | |
GGCATGTTCAATGCTCTTTC+AGG | - | Chr3:86577596-86577615 | MsG0380016686.01.T01:CDS | 45.0% | |
GGTGGCATCTATAACATCCT+CGG | - | Chr3:86577710-86577729 | MsG0380016686.01.T01:intron | 45.0% | |
GTTCCTTTACGATTCATGGG+TGG | + | Chr3:86577905-86577924 | None:intergenic | 45.0% | |
TACCCACCCATGAATCGTAA+AGG | - | Chr3:86577899-86577918 | MsG0380016686.01.T01:intron | 45.0% | |
TATTATATGGGGTGGTGCAC+TGG | - | Chr3:86578435-86578454 | MsG0380016686.01.T01:CDS | 45.0% | |
TCCTCCTATGTCCTTTACAC+TGG | - | Chr3:86577761-86577780 | MsG0380016686.01.T01:intron | 45.0% | |
TGTGAAGCTTGTGTAGAGTG+CGG | + | Chr3:86577672-86577691 | None:intergenic | 45.0% | |
TGTTATAGATGCCACCACCT+AGG | + | Chr3:86577706-86577725 | None:intergenic | 45.0% | |
TTCTCATGATTCCTGCTGCT+TGG | - | Chr3:86578209-86578228 | MsG0380016686.01.T01:CDS | 45.0% | |
TTGGACTTACACAGGTACAC+AGG | - | Chr3:86579000-86579019 | MsG0380016686.01.T01:CDS | 45.0% | |
! | ATTTTCGGAATCCTAGGTGG+TGG | - | Chr3:86577692-86577711 | MsG0380016686.01.T01:intron | 45.0% |
!! | AACATGGGTGGTGTTATTGG+TGG | - | Chr3:86577953-86577972 | MsG0380016686.01.T01:intron | 45.0% |
!! | GAAAGAGCATTGAACATGCC+TGG | + | Chr3:86577596-86577615 | None:intergenic | 45.0% |
!!! | GAAGTTTTTGAGGTTTCCGG+TGG | + | Chr3:86577506-86577525 | None:intergenic | 45.0% |
!!! | ATTTAAAAAATATTATGTTT+TGG | + | Chr3:86578758-86578777 | None:intergenic | 5.0% |
AAAGAGTTAAGTGGGGTCCG+AGG | + | Chr3:86577730-86577749 | None:intergenic | 50.0% | |
AGAATCAGCCACTCAACCAC+CGG | - | Chr3:86577487-86577506 | MsG0380016686.01.T01:CDS | 50.0% | |
GCATCGGAGCTGGACTATTA+TGG | - | Chr3:86577849-86577868 | MsG0380016686.01.T01:intron | 50.0% | |
GCTTGTGTAGAGTGCGGTTA+AGG | + | Chr3:86577666-86577685 | None:intergenic | 50.0% | |
TAAAGGGATACAAAGCGCGG+GGG | - | Chr3:86579029-86579048 | MsG0380016686.01.T01:CDS | 50.0% | |
! | CCCCACTTAACTCTTTTCGC+AGG | - | Chr3:86577734-86577753 | MsG0380016686.01.T01:intron | 50.0% |
! | GGACTATTATGGAGTGCCCA+AGG | - | Chr3:86577860-86577879 | MsG0380016686.01.T01:intron | 50.0% |
!! | GTAGTTTCCGGTGCTGTTCT+CGG | - | Chr3:86577827-86577846 | MsG0380016686.01.T01:intron | 50.0% |
!!! | GAGTCTGGTTCTGCTTTTGC+TGG | - | Chr3:86578502-86578521 | MsG0380016686.01.T01:CDS | 50.0% |
GCTCTTTCAGGAATGGGTGG+TGG | - | Chr3:86577608-86577627 | MsG0380016686.01.T01:CDS | 55.0% | |
TGAGGTTTCCGGTGGTTGAG+TGG | + | Chr3:86577498-86577517 | None:intergenic | 55.0% | |
! | CTTTCAGGAATGGGTGGTGG+TGG | - | Chr3:86577611-86577630 | MsG0380016686.01.T01:CDS | 55.0% |
!! | GAGTGCGGTTAAGGCGTTGT+TGG | + | Chr3:86577657-86577676 | None:intergenic | 55.0% |
TCCGATGCCGAGAACAGCAC+CGG | + | Chr3:86577837-86577856 | None:intergenic | 60.0% | |
!! | TCCGGTGCTGTTCTCGGCAT+CGG | - | Chr3:86577833-86577852 | MsG0380016686.01.T01:intron | 60.0% |
! | GCTGTTCTCGGCATCGGAGC+TGG | - | Chr3:86577839-86577858 | MsG0380016686.01.T01:intron | 65.0% |
GCGCGGGGGCTGCAGTTGCA+TGG | - | Chr3:86579043-86579062 | MsG0380016686.01.T01:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 86577464 | 86579200 | 86577464 | ID=MsG0380016686.01;Name=MsG0380016686.01 |
Chr3 | mRNA | 86577464 | 86579200 | 86577464 | ID=MsG0380016686.01.T01;Parent=MsG0380016686.01;Name=MsG0380016686.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|2|0|450 |
Chr3 | exon | 86578035 | 86579200 | 86578035 | ID=MsG0380016686.01.T01:exon:21903;Parent=MsG0380016686.01.T01 |
Chr3 | exon | 86577464 | 86577650 | 86577464 | ID=MsG0380016686.01.T01:exon:21902;Parent=MsG0380016686.01.T01 |
Chr3 | CDS | 86578035 | 86579200 | 86578035 | ID=MsG0380016686.01.T01:cds;Parent=MsG0380016686.01.T01 |
Chr3 | CDS | 86577464 | 86577650 | 86577464 | ID=MsG0380016686.01.T01:cds;Parent=MsG0380016686.01.T01 |
Gene Sequence |
Protein sequence |