AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016719.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016719.01.T01 MTR_3g094020 82.692 312 13 2 1 272 1 311 0.0 507
MsG0380016719.01.T01 MTR_5g075390 41.009 317 127 10 7 272 51 358 3.98e-57 187
MsG0380016719.01.T01 MTR_3g467120 36.676 349 129 13 7 272 38 377 2.00e-52 175
MsG0380016719.01.T01 MTR_6g034945 46.591 176 69 6 7 159 28 201 1.27e-30 116
MsG0380016719.01.T01 MTR_2g099050 39.524 210 60 7 7 159 72 271 6.63e-27 108
MsG0380016719.01.T01 MTR_4g072090 63.750 80 29 0 90 169 341 420 5.78e-24 100
MsG0380016719.01.T01 MTR_4g072090 63.750 80 29 0 90 169 341 420 8.15e-24 100
MsG0380016719.01.T01 MTR_1g023690 70.000 50 15 0 92 141 370 419 1.77e-14 73.6
MsG0380016719.01.T01 MTR_1g099030 28.358 201 129 4 24 222 51 238 1.10e-12 67.0
MsG0380016719.01.T01 MTR_2g090900 50.000 64 32 0 108 171 190 253 3.40e-11 63.2
MsG0380016719.01.T01 MTR_2g090900 50.000 64 32 0 108 171 190 253 5.73e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016719.01.T01 AT2G40620 38.788 330 100 11 5 248 32 345 3.63e-47 161
MsG0380016719.01.T01 AT1G06850 38.095 231 76 6 78 261 116 326 2.60e-34 127
MsG0380016719.01.T01 AT1G06850 66.667 84 27 1 78 160 116 199 3.03e-31 116
MsG0380016719.01.T01 AT1G06070 37.154 253 102 8 7 217 73 310 1.32e-30 118
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 2.79e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT2G31370 36.471 255 97 9 7 212 58 296 4.40e-29 114
MsG0380016719.01.T01 AT1G43700 54.867 113 32 3 74 173 146 252 2.64e-24 100
MsG0380016719.01.T01 AT4G38900 73.529 68 18 0 92 159 377 444 5.10e-24 101
MsG0380016719.01.T01 AT4G38900 73.529 68 18 0 92 159 377 444 5.10e-24 101
MsG0380016719.01.T01 AT4G38900 67.568 74 18 1 92 159 377 450 9.41e-22 94.7
MsG0380016719.01.T01 AT2G21230 54.255 94 42 1 66 159 328 420 8.96e-21 91.7
MsG0380016719.01.T01 AT2G21230 54.255 94 42 1 66 159 328 420 1.08e-20 91.7
MsG0380016719.01.T01 AT2G21230 54.255 94 42 1 66 159 328 420 1.08e-20 91.7
MsG0380016719.01.T01 AT2G21230 54.255 94 42 1 66 159 328 420 1.14e-20 91.7
MsG0380016719.01.T01 AT3G58120 50.794 63 31 0 109 171 202 264 1.04e-11 64.3
MsG0380016719.01.T01 AT3G58120 50.794 63 31 0 109 171 202 264 1.86e-11 63.9
MsG0380016719.01.T01 AT2G42380 32.374 139 80 3 108 236 185 319 7.00e-11 62.0

Find 98 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCTATCGGCCAATTTC+AGG 0.184834 3:+87027014 MsG0380016719.01.T01:CDS
AACATGGTCCAAACGATCTT+AGG 0.241223 3:+87026884 MsG0380016719.01.T01:CDS
TTTGATTTGATTCAGGATTC+TGG 0.271099 3:+87024780 MsG0380016719.01.T01:intron
CAATGTCCAGCCCCTGAAAT+TGG 0.281734 3:-87027026 None:intergenic
CACAATTGAGCAAGTTTATC+AGG 0.289271 3:-87024659 None:intergenic
TTTCATTCCCTCTCATCTAA+TGG 0.291764 3:+87026925 MsG0380016719.01.T01:CDS
GTTGCGGTGGTGGTGGATCT+TGG 0.360501 3:-87024478 None:intergenic
AAAGAAGGTTAAGTTCAAAA+AGG 0.362449 3:-87024223 None:intergenic
AGGGGCTGGACATTGGCAAC+AGG 0.370603 3:+87027034 MsG0380016719.01.T01:CDS
AAGCTTGAGAATATGAAAAT+TGG 0.377609 3:-87026840 None:intergenic
TGCATGGCCCTAAGATCGTT+TGG 0.389186 3:-87026892 None:intergenic
CCATGCTGATACCTATGGTT+TGG 0.391118 3:+87026810 MsG0380016719.01.T01:CDS
AAAGACCTCTTGGCGCGTTT+AGG 0.396524 3:-87024692 None:intergenic
GGTCGAAATCGTCGGGGATT+CGG 0.403638 3:-87024412 None:intergenic
GAGTTTGGATCCGGAATTAT+CGG 0.405371 3:-87024534 None:intergenic
TTTGCATCAAAAGGCGTTGT+TGG 0.405645 3:-87027106 None:intergenic
CGACGATTTCGACCTCGAAA+TGG 0.407698 3:+87024421 MsG0380016719.01.T01:CDS
TACATCGATTCCGATAATTC+CGG 0.408499 3:+87024524 MsG0380016719.01.T01:CDS
CATGCTGATACCTATGGTTT+GGG 0.409516 3:+87026811 MsG0380016719.01.T01:CDS
TTAGTAAAATTTGCATCAAA+AGG 0.417524 3:-87027115 None:intergenic
AAACTGAGGCTGGTGGGGAC+TGG 0.421487 3:-87026950 None:intergenic
ACCCACTTCGTATGATTTGT+CGG 0.426091 3:+87026978 MsG0380016719.01.T01:CDS
GATTCTATCGGCCAATTTCA+GGG 0.428325 3:+87027015 MsG0380016719.01.T01:CDS
GTGGTGGTGGATCTTGGAAC+TGG 0.429585 3:-87024472 None:intergenic
TATCGGCCAATTTCAGGGGC+TGG 0.448809 3:+87027020 MsG0380016719.01.T01:CDS
CATCGTTGCGGTTACCGATC+CGG 0.453334 3:-87024345 None:intergenic
GATAGGCTCAAGCTTGCTAC+TGG 0.454169 3:+87026776 MsG0380016719.01.T01:intron
ATTGAGATCGACGGTGGAAC+GGG 0.455173 3:-87024376 None:intergenic
ATTTCGAGGTCGAAATCGTC+GGG 0.457489 3:-87024419 None:intergenic
TCTCATGTTCTGATGCCTGA+TGG 0.464397 3:+87027060 MsG0380016719.01.T01:CDS
GAAGACGACGGGATTCAAAC+CGG 0.472913 3:+87024326 MsG0380016719.01.T01:five_prime_UTR
GGCGGTAGGAGAATTGAGTT+TGG 0.473174 3:-87024549 None:intergenic
CTGATAAACTTGCTCAATTG+TGG 0.489201 3:+87024660 MsG0380016719.01.T01:CDS
ACAGAAACGGAGGGACCATC+AGG 0.491647 3:-87027075 None:intergenic
AGGAGAATTGAGTTTGGATC+CGG 0.498325 3:-87024543 None:intergenic
GGAATTGCTACGGCGGTGAC+CGG 0.499947 3:-87024579 None:intergenic
TCTTCTTCCTTGTTGTCTGA+AGG 0.501718 3:+87024611 MsG0380016719.01.T01:CDS
CAATTTCAGGGGCTGGACAT+TGG 0.506474 3:+87027027 MsG0380016719.01.T01:CDS
AGATCAAACTGAGGCTGGTG+GGG 0.510809 3:-87026955 None:intergenic
GTTCCACCGTCGATCTCAAT+CGG 0.512206 3:+87024379 MsG0380016719.01.T01:CDS
ATTATCGGAATCGATGTAAG+AGG 0.514373 3:-87024519 None:intergenic
ACATGGTCCAAACGATCTTA+GGG 0.515048 3:+87026885 MsG0380016719.01.T01:CDS
TAGATCAAACTGAGGCTGGT+GGG 0.518122 3:-87026956 None:intergenic
TCGTCGTGTTGTTGCGGTGG+TGG 0.518420 3:-87024488 None:intergenic
TCGTGTTGTTGCGGTGGTGG+TGG 0.524797 3:-87024485 None:intergenic
TCTCCTACCGCCGCTAATGC+CGG 0.526393 3:+87024560 MsG0380016719.01.T01:CDS
ACCATAGGTATCAGCATGGT+TGG 0.529412 3:-87026806 None:intergenic
CATTTCGAGGTCGAAATCGT+CGG 0.531230 3:-87024420 None:intergenic
TGGGTAGATCAAACTGAGGC+TGG 0.537417 3:-87026960 None:intergenic
ACGGCGGTGACCGGCATTAG+CGG 0.537421 3:-87024570 None:intergenic
CGTTTGGACCATGTTGTGGT+TGG 0.540715 3:-87026876 None:intergenic
ACCAACCATGCTGATACCTA+TGG 0.544230 3:+87026805 MsG0380016719.01.T01:CDS
GTTATGTGGTTGAGCTTGAA+AGG 0.547036 3:+87024845 MsG0380016719.01.T01:CDS
CGGAGAAGCGTCGAAGTCGA+AGG 0.552256 3:-87024447 None:intergenic
ATGAAAATGTTGCATTTGCA+TGG 0.556228 3:-87026908 None:intergenic
GGGGCTGGACATTGGCAACA+GGG 0.559117 3:+87027035 MsG0380016719.01.T01:CDS
GATTGAGATCGACGGTGGAA+CGG 0.569204 3:-87024377 None:intergenic
CGGAATCGATGTAAGAGGAA+AGG 0.570255 3:-87024514 None:intergenic
AGGAGATCGTCGTGTTGTTG+CGG 0.570948 3:-87024494 None:intergenic
ATGTATCGGCGGAATTGCTA+CGG 0.574251 3:-87024589 None:intergenic
AGATCGTTTGGACCATGTTG+TGG 0.576424 3:-87026880 None:intergenic
AGAGAGGAAAGCTTGTTATG+TGG 0.577168 3:+87024831 MsG0380016719.01.T01:CDS
GACTGGATCCATTAGATGAG+AGG 0.584227 3:-87026933 None:intergenic
AGTCGAAGGGATCCATTTCG+AGG 0.586525 3:-87024433 None:intergenic
TTGGTGCATTCCCAAACCAT+AGG 0.592111 3:-87026821 None:intergenic
CAACAAGGAAGAAGATGTAT+CGG 0.593104 3:-87024603 None:intergenic
CCGCGGCGAGGTCGAAAGAG+AGG 0.593130 3:+87024815 MsG0380016719.01.T01:CDS
ACTGGATCCATTAGATGAGA+GGG 0.595904 3:-87026932 None:intergenic
GTAGATCAAACTGAGGCTGG+TGG 0.597370 3:-87026957 None:intergenic
TTCCGACAAATCATACGAAG+TGG 0.598591 3:-87026980 None:intergenic
ATTCTATCGGCCAATTTCAG+GGG 0.601347 3:+87027016 MsG0380016719.01.T01:CDS
ATGTTGTGGTTGGTGCATGA+AGG 0.606809 3:-87026866 None:intergenic
TTCGATTCCTTCAGACAACA+AGG 0.616363 3:-87024618 None:intergenic
GGAGAAGCGTCGAAGTCGAA+GGG 0.620947 3:-87024446 None:intergenic
AGATCGTCGTGTTGTTGCGG+TGG 0.629335 3:-87024491 None:intergenic
CTTGGCGCGTTTAGGATCAA+CGG 0.630373 3:-87024684 None:intergenic
CCTCTCTTTCGACCTCGCCG+CGG 0.634132 3:-87024815 None:intergenic
TCCGACAAATCATACGAAGT+GGG 0.636300 3:-87026979 None:intergenic
TTCATGCACCAACCACAACA+TGG 0.648904 3:+87026868 MsG0380016719.01.T01:CDS
CTCTCTCACACACACTCGCG+CGG 0.652014 3:-87024269 None:intergenic
GGTGGATCTTGGAACTGGAG+CGG 0.658797 3:-87024467 None:intergenic
CGGGAACGACGACATCGTTG+CGG 0.659963 3:-87024357 None:intergenic
CGAATCGTCAATCCGCGGCG+AGG 0.660871 3:+87024803 MsG0380016719.01.T01:CDS
TTGATCCTAAACGCGCCAAG+AGG 0.666281 3:+87024687 MsG0380016719.01.T01:CDS
GCTCAAGCTTGCTACTGGAG+AGG 0.667501 3:+87026781 MsG0380016719.01.T01:CDS
CCTCCGATTGAGATCGACGG+TGG 0.668695 3:-87024382 None:intergenic
CAAGGAAGAAGATGTATCGG+CGG 0.669677 3:-87024600 None:intergenic
CGACGGGATTCAAACCGGAT+CGG 0.671774 3:+87024331 MsG0380016719.01.T01:five_prime_UTR
TGACCGGCATTAGCGGCGGT+AGG 0.676875 3:-87024563 None:intergenic
ATGTTGTCAAGTGATTCTAT+CGG 0.677885 3:+87027003 MsG0380016719.01.T01:CDS
CCAAACCATAGGTATCAGCA+TGG 0.689450 3:-87026810 None:intergenic
TATCGGCGGAATTGCTACGG+CGG 0.692611 3:-87024586 None:intergenic
CCACCGTCGATCTCAATCGG+AGG 0.695045 3:+87024382 MsG0380016719.01.T01:CDS
GCGGTGACCGGCATTAGCGG+CGG 0.701383 3:-87024567 None:intergenic
GTACCTCCGATTGAGATCGA+CGG 0.703198 3:-87024385 None:intergenic
TTTCGAGGTCGAAATCGTCG+GGG 0.718515 3:-87024418 None:intergenic
TCTGGCGAATCGTCAATCCG+CGG 0.722384 3:+87024798 MsG0380016719.01.T01:CDS
GAAGTGGGTAGATCAAACTG+AGG 0.775188 3:-87026964 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATTTTTGATTCAACTT+AGG - Chr3:87024948-87024967 None:intergenic 15.0%
!!! TAATTTTAGTCTCTTAAATT+TGG + Chr3:87025927-87025946 MsG0380016719.01.T01:intron 15.0%
!! AAAAAAAATAACCAAAGGAT+AGG - Chr3:87025485-87025504 None:intergenic 20.0%
!! AAAAAAATAACCAAAGGATA+GGG - Chr3:87025484-87025503 None:intergenic 20.0%
!! AATAAGAGTGAGAATTATTT+AGG + Chr3:87025185-87025204 MsG0380016719.01.T01:intron 20.0%
!! AATAGACAAACATTAATGTT+TGG - Chr3:87026092-87026111 None:intergenic 20.0%
!! ATATAAGGAATTTAACAAAC+TGG - Chr3:87025598-87025617 None:intergenic 20.0%
!! ATGGAAAAAAAAATAACCAA+AGG - Chr3:87025490-87025509 None:intergenic 20.0%
!! TATAAGTTATCTTGTAGTAT+CGG + Chr3:87026028-87026047 MsG0380016719.01.T01:intron 20.0%
!! TGTTAAATTCCTTATATTAG+TGG + Chr3:87025601-87025620 MsG0380016719.01.T01:intron 20.0%
!!! TGGTTATTTTTTTTTCCATT+GGG + Chr3:87025491-87025510 MsG0380016719.01.T01:intron 20.0%
!!! TTGGTTATTTTTTTTTCCAT+TGG + Chr3:87025490-87025509 MsG0380016719.01.T01:intron 20.0%
! AAAAAAAAAAAGAAGACGAC+GGG + Chr3:87024315-87024334 MsG0380016719.01.T01:five_prime_UTR 25.0%
! AAAAAATTACATGTCAAACG+AGG - Chr3:87026252-87026271 None:intergenic 25.0%
! AAAGAAGGTTAAGTTCAAAA+AGG - Chr3:87024226-87024245 None:intergenic 25.0%
! AAATTCCTTATATTAGTGGT+GGG + Chr3:87025605-87025624 MsG0380016719.01.T01:intron 25.0%
! AAGCTTGAGAATATGAAAAT+TGG - Chr3:87026843-87026862 None:intergenic 25.0%
! AAGTTCAATAAAGGAAACAA+AGG - Chr3:87025570-87025589 None:intergenic 25.0%
! CAAGTAAAATAAAAACCGAA+AGG - Chr3:87026446-87026465 None:intergenic 25.0%
! CATATTCTAACAGAAACTAT+AGG - Chr3:87025971-87025990 None:intergenic 25.0%
! GAAAAAAAAAAAGAAGACGA+CGG + Chr3:87024314-87024333 MsG0380016719.01.T01:five_prime_UTR 25.0%
! TAAATTCCTTATATTAGTGG+TGG + Chr3:87025604-87025623 MsG0380016719.01.T01:intron 25.0%
! TACAGCATTTATCCTTTAAA+TGG - Chr3:87026182-87026201 None:intergenic 25.0%
! TAGCTTACATTCTTAGTAAT+TGG + Chr3:87026327-87026346 MsG0380016719.01.T01:intron 25.0%
! TCCTTTCAATGATAAAAAGA+AGG - Chr3:87024241-87024260 None:intergenic 25.0%
! TTACATTCTTAGTAATTGGA+TGG + Chr3:87026331-87026350 MsG0380016719.01.T01:intron 25.0%
! TTCCATCAGTATAATATGAA+AGG + Chr3:87025842-87025861 MsG0380016719.01.T01:intron 25.0%
! TTTGTTTCCTTTATTGAACT+TGG + Chr3:87025569-87025588 MsG0380016719.01.T01:intron 25.0%
!! ACCTTCTTTTTATCATTGAA+AGG + Chr3:87024237-87024256 MsG0380016719.01.T01:five_prime_UTR 25.0%
!! TCATTGAATTGAAAAGTATG+AGG - Chr3:87026062-87026081 None:intergenic 25.0%
!!! AAAACAGAAACACTACTTTT+AGG - Chr3:87026636-87026655 None:intergenic 25.0%
!!! ACTCCCTTTTTTTTTTTTGA+AGG - Chr3:87025436-87025455 None:intergenic 25.0%
!!! GTTGGTTTTATTAACAGAAA+CGG - Chr3:87027091-87027110 None:intergenic 25.0%
AGTCTCTTAAATTTGGTAGA+TGG + Chr3:87025934-87025953 MsG0380016719.01.T01:intron 30.0%
ATGAAAATGTTGCATTTGCA+TGG - Chr3:87026911-87026930 None:intergenic 30.0%
ATGTACAACGATTTGAAAAC+TGG - Chr3:87026604-87026623 None:intergenic 30.0%
ATGTTGTCAAGTGATTCTAT+CGG + Chr3:87027003-87027022 MsG0380016719.01.T01:CDS 30.0%
CAATTACAAACTAAATGAGC+TGG + Chr3:87026204-87026223 MsG0380016719.01.T01:intron 30.0%
CATATGAAGATTCTGTTCAA+GGG + Chr3:87025360-87025379 MsG0380016719.01.T01:intron 30.0%
GGGCCTTCAAAAAAAAAAAA+GGG + Chr3:87025430-87025449 MsG0380016719.01.T01:intron 30.0%
GTCTCTTAAATTTGGTAGAT+GGG + Chr3:87025935-87025954 MsG0380016719.01.T01:intron 30.0%
GTTCAAAAAGGAAATCTCTA+CGG - Chr3:87024214-87024233 None:intergenic 30.0%
TAAAGTGTAGCATATTAGCA+TGG - Chr3:87025780-87025799 None:intergenic 30.0%
TATTAATATTTGAGCCTACG+TGG + Chr3:87026112-87026131 MsG0380016719.01.T01:intron 30.0%
TCAGGGTTAAACTAAGTAAA+TGG - Chr3:87025868-87025887 None:intergenic 30.0%
TCATATGAAGATTCTGTTCA+AGG + Chr3:87025359-87025378 MsG0380016719.01.T01:intron 30.0%
TGGGCCTTCAAAAAAAAAAA+AGG + Chr3:87025429-87025448 MsG0380016719.01.T01:intron 30.0%
TTATGGTAAAACGTTATGGA+AGG + Chr3:87025272-87025291 MsG0380016719.01.T01:intron 30.0%
TTGGATGGTATATTAACACT+TGG + Chr3:87026346-87026365 MsG0380016719.01.T01:intron 30.0%
! ATTGAAAGAACGAAGTTGAT+AGG + Chr3:87026759-87026778 MsG0380016719.01.T01:intron 30.0%
! TGCTCAATTAAATCTTTTCC+AGG + Chr3:87024906-87024925 MsG0380016719.01.T01:CDS 30.0%
! TTCATTCATTTGGAAAGTGT+GGG + Chr3:87026376-87026395 MsG0380016719.01.T01:intron 30.0%
!! ACTTGTTGTGAAGCTTAAAT+GGG + Chr3:87025028-87025047 MsG0380016719.01.T01:intron 30.0%
!! CAGCTCATTTAGTTTGTAAT+TGG - Chr3:87026206-87026225 None:intergenic 30.0%
!! GTTTTATTAACAGAAACGGA+GGG - Chr3:87027087-87027106 None:intergenic 30.0%
!! TACTTGTTGTGAAGCTTAAA+TGG + Chr3:87025027-87025046 MsG0380016719.01.T01:intron 30.0%
!! TGGCAGTTCATTTTTCAAAA+TGG + Chr3:87025539-87025558 MsG0380016719.01.T01:intron 30.0%
!! TTTGATTTGATTCAGGATTC+TGG + Chr3:87024780-87024799 MsG0380016719.01.T01:intron 30.0%
!!! GAACTTGTTTTTATAGATCG+TGG + Chr3:87024756-87024775 MsG0380016719.01.T01:intron 30.0%
!!! TTTTTTTTCCATTGGGCTAT+TGG + Chr3:87025498-87025517 MsG0380016719.01.T01:intron 30.0%
ACCGATGCTTACATTAATTC+AGG - Chr3:87025886-87025905 None:intergenic 35.0%
ACTAGTCATTGAAGTAGTGA+AGG - Chr3:87026581-87026600 None:intergenic 35.0%
ATTATCGGAATCGATGTAAG+AGG - Chr3:87024522-87024541 None:intergenic 35.0%
CAACAAGGAAGAAGATGTAT+CGG - Chr3:87024606-87024625 None:intergenic 35.0%
CACAATTGAGCAAGTTTATC+AGG - Chr3:87024662-87024681 None:intergenic 35.0%
CCCTGAATTAATGTAAGCAT+CGG + Chr3:87025882-87025901 MsG0380016719.01.T01:intron 35.0%
CCGATGCTTACATTAATTCA+GGG - Chr3:87025885-87025904 None:intergenic 35.0%
CTGGAAACCAAGTTCAATAA+AGG - Chr3:87025579-87025598 None:intergenic 35.0%
CTTCATTCATTTGGAAAGTG+TGG + Chr3:87026375-87026394 MsG0380016719.01.T01:intron 35.0%
GAAATCCCACCACTAATATA+AGG - Chr3:87025613-87025632 None:intergenic 35.0%
GAAGTAGTGATAGATGAACA+TGG - Chr3:87026524-87026543 None:intergenic 35.0%
GCATTAAAAGAAAGACCTCT+TGG - Chr3:87024705-87024724 None:intergenic 35.0%
GGCCTTTCATATTATACTGA+TGG - Chr3:87025847-87025866 None:intergenic 35.0%
TGACATGGTAGTCCATTTAA+AGG + Chr3:87026167-87026186 MsG0380016719.01.T01:intron 35.0%
TGGTCTAGACTTCATTCATT+TGG + Chr3:87026366-87026385 MsG0380016719.01.T01:intron 35.0%
TTTCATTCCCTCTCATCTAA+TGG + Chr3:87026925-87026944 MsG0380016719.01.T01:CDS 35.0%
! AAAATACCGAGTTGAAGCTT+CGG + Chr3:87025706-87025725 MsG0380016719.01.T01:intron 35.0%
! CTGATAAACTTGCTCAATTG+TGG + Chr3:87024660-87024679 MsG0380016719.01.T01:CDS 35.0%
!! TACATCGATTCCGATAATTC+CGG + Chr3:87024524-87024543 MsG0380016719.01.T01:CDS 35.0%
!! TCGTGGATTTGATTTGATTC+AGG + Chr3:87024773-87024792 MsG0380016719.01.T01:intron 35.0%
!!! CTTTTTCAGAGAGATACAAC+TGG + Chr3:87025672-87025691 MsG0380016719.01.T01:intron 35.0%
!!! GGTTTTATTAACAGAAACGG+AGG - Chr3:87027088-87027107 None:intergenic 35.0%
!!! GGTTTTGATTCATGGTTCAT+TGG - Chr3:87026560-87026579 None:intergenic 35.0%
!!! GTAGTGAAGGTTTTGATTCA+TGG - Chr3:87026568-87026587 None:intergenic 35.0%
AACATGGTCCAAACGATCTT+AGG + Chr3:87026884-87026903 MsG0380016719.01.T01:CDS 40.0%
ACATGGTCCAAACGATCTTA+GGG + Chr3:87026885-87026904 MsG0380016719.01.T01:CDS 40.0%
ACTGGATCCATTAGATGAGA+GGG - Chr3:87026935-87026954 None:intergenic 40.0%
AGGAGAATTGAGTTTGGATC+CGG - Chr3:87024546-87024565 None:intergenic 40.0%
AGTGATAAATCCGATCAGAG+AGG + Chr3:87025077-87025096 MsG0380016719.01.T01:intron 40.0%
AGTTGTTGTGGCCATTAATG+AGG + Chr3:87025321-87025340 MsG0380016719.01.T01:intron 40.0%
ATAAATCCGATCAGAGAGGT+AGG + Chr3:87025081-87025100 MsG0380016719.01.T01:intron 40.0%
ATTCAACCTACCTCTCTGAT+CGG - Chr3:87025090-87025109 None:intergenic 40.0%
ATTCTATCGGCCAATTTCAG+GGG + Chr3:87027016-87027035 MsG0380016719.01.T01:CDS 40.0%
CAACAAGCTAAGCTATGTGA+TGG + Chr3:87025744-87025763 MsG0380016719.01.T01:intron 40.0%
CACCATACGCATTACACAAA+CGG - Chr3:87025225-87025244 None:intergenic 40.0%
CATGCTGATACCTATGGTTT+GGG + Chr3:87026811-87026830 MsG0380016719.01.T01:CDS 40.0%
CTACAGTGATTGAAGCCTTT+CGG + Chr3:87026428-87026447 MsG0380016719.01.T01:intron 40.0%
GAGTTTGGATCCGGAATTAT+CGG - Chr3:87024537-87024556 None:intergenic 40.0%
GATTCTATCGGCCAATTTCA+GGG + Chr3:87027015-87027034 MsG0380016719.01.T01:CDS 40.0%
GGCAATGATGAGTAATAACC+TGG - Chr3:87024927-87024946 None:intergenic 40.0%
GGGGTTATGGTAAAACGTTA+TGG + Chr3:87025268-87025287 MsG0380016719.01.T01:intron 40.0%
GTTATGTGGTTGAGCTTGAA+AGG + Chr3:87024845-87024864 MsG0380016719.01.T01:CDS 40.0%
GTTGTTGTGGCCATTAATGA+GGG + Chr3:87025322-87025341 MsG0380016719.01.T01:intron 40.0%
TACCGTTTGTGTAATGCGTA+TGG + Chr3:87025220-87025239 MsG0380016719.01.T01:intron 40.0%
TCACAAACCATAATCCACGT+AGG - Chr3:87026129-87026148 None:intergenic 40.0%
TCCGACAAATCATACGAAGT+GGG - Chr3:87026982-87027001 None:intergenic 40.0%
TGATTCTATCGGCCAATTTC+AGG + Chr3:87027014-87027033 MsG0380016719.01.T01:CDS 40.0%
TTATGGAAGGCAACCTCAAA+CGG + Chr3:87025285-87025304 MsG0380016719.01.T01:intron 40.0%
TTCCGACAAATCATACGAAG+TGG - Chr3:87026983-87027002 None:intergenic 40.0%
TTCGATTCCTTCAGACAACA+AGG - Chr3:87024621-87024640 None:intergenic 40.0%
TTGTAACCGAAGCTTCAACT+CGG - Chr3:87025715-87025734 None:intergenic 40.0%
TTTCTTCCACGTAGTTGTTG+TGG + Chr3:87025309-87025328 MsG0380016719.01.T01:intron 40.0%
! ACCCACTTCGTATGATTTGT+CGG + Chr3:87026978-87026997 MsG0380016719.01.T01:CDS 40.0%
! ATCAGAGAGGTAGGTTGAAT+TGG + Chr3:87025090-87025109 MsG0380016719.01.T01:intron 40.0%
! ATTTGAGCCTACGTGGATTA+TGG + Chr3:87026119-87026138 MsG0380016719.01.T01:intron 40.0%
! TCTTCTTCCTTGTTGTCTGA+AGG + Chr3:87024611-87024630 MsG0380016719.01.T01:CDS 40.0%
!! AGAGAGGAAAGCTTGTTATG+TGG + Chr3:87024831-87024850 MsG0380016719.01.T01:CDS 40.0%
AAAGGATAGGGCAACTGTTC+TGG - Chr3:87025472-87025491 None:intergenic 45.0%
AACGTCCCAACCCTCATTAA+TGG - Chr3:87025335-87025354 None:intergenic 45.0%
AAGCAACACCAATAGCCCAA+TGG - Chr3:87025509-87025528 None:intergenic 45.0%
AATTGGACTCCATTCACAGG+TGG + Chr3:87025404-87025423 MsG0380016719.01.T01:intron 45.0%
ACCAACCATGCTGATACCTA+TGG + Chr3:87026805-87026824 MsG0380016719.01.T01:CDS 45.0%
ACCATAGGTATCAGCATGGT+TGG - Chr3:87026809-87026828 None:intergenic 45.0%
ACGTGGAAGAAATCCGTTTG+AGG - Chr3:87025301-87025320 None:intergenic 45.0%
AGAACAGTTGCCCTATCCTT+TGG + Chr3:87025471-87025490 MsG0380016719.01.T01:intron 45.0%
AGATCGTTTGGACCATGTTG+TGG - Chr3:87026883-87026902 None:intergenic 45.0%
AGCACTCTGACGCTTAAGTT+AGG + Chr3:87025154-87025173 MsG0380016719.01.T01:intron 45.0%
ATTTCGAGGTCGAAATCGTC+GGG - Chr3:87024422-87024441 None:intergenic 45.0%
CAAGGAAGAAGATGTATCGG+CGG - Chr3:87024603-87024622 None:intergenic 45.0%
CATTTCGAGGTCGAAATCGT+CGG - Chr3:87024423-87024442 None:intergenic 45.0%
CCAAACCATAGGTATCAGCA+TGG - Chr3:87026813-87026832 None:intergenic 45.0%
CCAGCAAAACAAGAGAAACG+AGG - Chr3:87025806-87025825 None:intergenic 45.0%
CCATGCTGATACCTATGGTT+TGG + Chr3:87026810-87026829 MsG0380016719.01.T01:CDS 45.0%
CGGAATCGATGTAAGAGGAA+AGG - Chr3:87024517-87024536 None:intergenic 45.0%
CGTCTGTAGCGATGAGATTA+GGG + Chr3:87025120-87025139 MsG0380016719.01.T01:intron 45.0%
GAAGCTTCGGTTACAAACCA+TGG + Chr3:87025719-87025738 MsG0380016719.01.T01:intron 45.0%
GAAGTGGGTAGATCAAACTG+AGG - Chr3:87026967-87026986 None:intergenic 45.0%
GACTGGATCCATTAGATGAG+AGG - Chr3:87026936-87026955 None:intergenic 45.0%
GCACTCTGACGCTTAAGTTA+GGG + Chr3:87025155-87025174 MsG0380016719.01.T01:intron 45.0%
GTCAACTGTCTCAGATGACA+TGG + Chr3:87026152-87026171 MsG0380016719.01.T01:intron 45.0%
GTCTGTAGCGATGAGATTAG+GGG + Chr3:87025121-87025140 MsG0380016719.01.T01:intron 45.0%
GTTCAAGGGAATCTGTGTGT+GGG + Chr3:87025374-87025393 MsG0380016719.01.T01:intron 45.0%
TAATGAGGGTTGGGACGTTA+TGG + Chr3:87025336-87025355 MsG0380016719.01.T01:intron 45.0%
TAATGGCCACAACAACTACG+TGG - Chr3:87025318-87025337 None:intergenic 45.0%
TAGATCAAACTGAGGCTGGT+GGG - Chr3:87026959-87026978 None:intergenic 45.0%
TCGAATTGGACTCCATTCAC+AGG + Chr3:87025401-87025420 MsG0380016719.01.T01:intron 45.0%
TCTCATGTTCTGATGCCTGA+TGG + Chr3:87027060-87027079 MsG0380016719.01.T01:CDS 45.0%
TGTGGCCATTAATGAGGGTT+GGG + Chr3:87025327-87025346 MsG0380016719.01.T01:intron 45.0%
TGTTCAAGGGAATCTGTGTG+TGG + Chr3:87025373-87025392 MsG0380016719.01.T01:intron 45.0%
TTCATGCACCAACCACAACA+TGG + Chr3:87026868-87026887 MsG0380016719.01.T01:CDS 45.0%
TTGGTGCATTCCCAAACCAT+AGG - Chr3:87026824-87026843 None:intergenic 45.0%
TTGTGGCCATTAATGAGGGT+TGG + Chr3:87025326-87025345 MsG0380016719.01.T01:intron 45.0%
! ATAGGGCAACTGTTCTGGAT+TGG - Chr3:87025467-87025486 None:intergenic 45.0%
! ATGTATCGGCGGAATTGCTA+CGG - Chr3:87024592-87024611 None:intergenic 45.0%
! ATGTTGTGGTTGGTGCATGA+AGG - Chr3:87026869-87026888 None:intergenic 45.0%
! GTTTTACCATAACCCCTCCT+GGG - Chr3:87025264-87025283 None:intergenic 45.0%
!! TAGCTTAGCTTGTTGCTCCA+TGG - Chr3:87025739-87025758 None:intergenic 45.0%
!!! CCTCGTTTCTCTTGTTTTGC+TGG + Chr3:87025803-87025822 MsG0380016719.01.T01:intron 45.0%
!!! GGTGTTGCTTTTCACTCTTG+TGG + Chr3:87025519-87025538 MsG0380016719.01.T01:intron 45.0%
!!! ATAATTATTATTTTTAAAAC+TGG - Chr3:87026712-87026731 None:intergenic 5.0%
AAAGACCTCTTGGCGCGTTT+AGG - Chr3:87024695-87024714 None:intergenic 50.0%
ACTCCATTCACAGGTGGAGT+GGG + Chr3:87025410-87025429 MsG0380016719.01.T01:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+CGG + Chr3:87024286-87024305 MsG0380016719.01.T01:five_prime_UTR 50.0%
AGATCAAACTGAGGCTGGTG+GGG - Chr3:87026958-87026977 None:intergenic 50.0%
AGTCGAAGGGATCCATTTCG+AGG - Chr3:87024436-87024455 None:intergenic 50.0%
ATGTCGAAGGAATCCCAGGA+GGG + Chr3:87025248-87025267 MsG0380016719.01.T01:intron 50.0%
ATTGAGATCGACGGTGGAAC+GGG - Chr3:87024379-87024398 None:intergenic 50.0%
CAATGTCCAGCCCCTGAAAT+TGG - Chr3:87027029-87027048 None:intergenic 50.0%
CAATTTCAGGGGCTGGACAT+TGG + Chr3:87027027-87027046 MsG0380016719.01.T01:CDS 50.0%
CGACGATTTCGACCTCGAAA+TGG + Chr3:87024421-87024440 MsG0380016719.01.T01:CDS 50.0%
CGTTTGGACCATGTTGTGGT+TGG - Chr3:87026879-87026898 None:intergenic 50.0%
GAAGACGACGGGATTCAAAC+CGG + Chr3:87024326-87024345 MsG0380016719.01.T01:five_prime_UTR 50.0%
GATTGAGATCGACGGTGGAA+CGG - Chr3:87024380-87024399 None:intergenic 50.0%
GCATATGTCGAAGGAATCCC+AGG + Chr3:87025244-87025263 MsG0380016719.01.T01:intron 50.0%
GCGTATGGTGCATATGTCGA+AGG + Chr3:87025235-87025254 MsG0380016719.01.T01:intron 50.0%
GCGTCTGTAGCGATGAGATT+AGG + Chr3:87025119-87025138 MsG0380016719.01.T01:intron 50.0%
GGCGGTAGGAGAATTGAGTT+TGG - Chr3:87024552-87024571 None:intergenic 50.0%
GTACCTCCGATTGAGATCGA+CGG - Chr3:87024388-87024407 None:intergenic 50.0%
GTAGATCAAACTGAGGCTGG+TGG - Chr3:87026960-87026979 None:intergenic 50.0%
GTTCCACCGTCGATCTCAAT+CGG + Chr3:87024379-87024398 MsG0380016719.01.T01:CDS 50.0%
TATGTCGAAGGAATCCCAGG+AGG + Chr3:87025247-87025266 MsG0380016719.01.T01:intron 50.0%
TGCAACGACTTGAGCTGACA+TGG - Chr3:87026284-87026303 None:intergenic 50.0%
TGCATGGCCCTAAGATCGTT+TGG - Chr3:87026895-87026914 None:intergenic 50.0%
TGGGTAGATCAAACTGAGGC+TGG - Chr3:87026963-87026982 None:intergenic 50.0%
TGTAGCGATGAGATTAGGGG+TGG + Chr3:87025124-87025143 MsG0380016719.01.T01:intron 50.0%
TGTGTGTGGGAACGTCGAAT+TGG + Chr3:87025387-87025406 MsG0380016719.01.T01:intron 50.0%
TTGATCCTAAACGCGCCAAG+AGG + Chr3:87024687-87024706 MsG0380016719.01.T01:CDS 50.0%
TTTCGAGGTCGAAATCGTCG+GGG - Chr3:87024421-87024440 None:intergenic 50.0%
! AGGAGATCGTCGTGTTGTTG+CGG - Chr3:87024497-87024516 None:intergenic 50.0%
! CGTTTTACCATAACCCCTCC+TGG - Chr3:87025265-87025284 None:intergenic 50.0%
! CTTGGCGCGTTTAGGATCAA+CGG - Chr3:87024687-87024706 None:intergenic 50.0%
!! GATAGGCTCAAGCTTGCTAC+TGG + Chr3:87026776-87026795 MsG0380016719.01.T01:intron 50.0%
ACAGAAACGGAGGGACCATC+AGG - Chr3:87027078-87027097 None:intergenic 55.0%
AGGAATCCCAGGAGGGGTTA+TGG + Chr3:87025255-87025274 MsG0380016719.01.T01:intron 55.0%
CATCGTTGCGGTTACCGATC+CGG - Chr3:87024348-87024367 None:intergenic 55.0%
CGACGGGATTCAAACCGGAT+CGG + Chr3:87024331-87024350 MsG0380016719.01.T01:five_prime_UTR 55.0%
GACTCCATTCACAGGTGGAG+TGG + Chr3:87025409-87025428 MsG0380016719.01.T01:intron 55.0%
GGTCGAAATCGTCGGGGATT+CGG - Chr3:87024415-87024434 None:intergenic 55.0%
GGTGGATCTTGGAACTGGAG+CGG - Chr3:87024470-87024489 None:intergenic 55.0%
TATCGGCCAATTTCAGGGGC+TGG + Chr3:87027020-87027039 MsG0380016719.01.T01:CDS 55.0%
TATCGGCGGAATTGCTACGG+CGG - Chr3:87024589-87024608 None:intergenic 55.0%
TCTGGCGAATCGTCAATCCG+CGG + Chr3:87024798-87024817 MsG0380016719.01.T01:CDS 55.0%
TGTCGAAGGAATCCCAGGAG+GGG + Chr3:87025249-87025268 MsG0380016719.01.T01:intron 55.0%
! AGATCGTCGTGTTGTTGCGG+TGG - Chr3:87024494-87024513 None:intergenic 55.0%
!! GCTCAAGCTTGCTACTGGAG+AGG + Chr3:87026781-87026800 MsG0380016719.01.T01:CDS 55.0%
!! GGAGAAGCGTCGAAGTCGAA+GGG - Chr3:87024449-87024468 None:intergenic 55.0%
!! GTGGTGGTGGATCTTGGAAC+TGG - Chr3:87024475-87024494 None:intergenic 55.0%
AAACTGAGGCTGGTGGGGAC+TGG - Chr3:87026953-87026972 None:intergenic 60.0%
AGGCCCACTCCACCTGTGAA+TGG - Chr3:87025416-87025435 None:intergenic 60.0%
AGGGGCTGGACATTGGCAAC+AGG + Chr3:87027034-87027053 MsG0380016719.01.T01:CDS 60.0%
CCACCGTCGATCTCAATCGG+AGG + Chr3:87024382-87024401 MsG0380016719.01.T01:CDS 60.0%
CCTCCGATTGAGATCGACGG+TGG - Chr3:87024385-87024404 None:intergenic 60.0%
CGGGAACGACGACATCGTTG+CGG - Chr3:87024360-87024379 None:intergenic 60.0%
CTCTCTCACACACACTCGCG+CGG - Chr3:87024272-87024291 None:intergenic 60.0%
GGAATTGCTACGGCGGTGAC+CGG - Chr3:87024582-87024601 None:intergenic 60.0%
GGGGCTGGACATTGGCAACA+GGG + Chr3:87027035-87027054 MsG0380016719.01.T01:CDS 60.0%
TCTCCTACCGCCGCTAATGC+CGG + Chr3:87024560-87024579 MsG0380016719.01.T01:CDS 60.0%
! TCGTCGTGTTGTTGCGGTGG+TGG - Chr3:87024491-87024510 None:intergenic 60.0%
! TCGTGTTGTTGCGGTGGTGG+TGG - Chr3:87024488-87024507 None:intergenic 60.0%
!! CGGAGAAGCGTCGAAGTCGA+AGG - Chr3:87024450-87024469 None:intergenic 60.0%
!! GTTGCGGTGGTGGTGGATCT+TGG - Chr3:87024481-87024500 None:intergenic 60.0%
ACGGCGGTGACCGGCATTAG+CGG - Chr3:87024573-87024592 None:intergenic 65.0%
CCTCTCTTTCGACCTCGCCG+CGG - Chr3:87024818-87024837 None:intergenic 65.0%
CGAATCGTCAATCCGCGGCG+AGG + Chr3:87024803-87024822 MsG0380016719.01.T01:CDS 65.0%
TGACCGGCATTAGCGGCGGT+AGG - Chr3:87024566-87024585 None:intergenic 65.0%
CCGCGGCGAGGTCGAAAGAG+AGG + Chr3:87024815-87024834 MsG0380016719.01.T01:CDS 70.0%
GCGGTGACCGGCATTAGCGG+CGG - Chr3:87024570-87024589 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87024202 87027122 87024202 ID=MsG0380016719.01;Name=MsG0380016719.01
Chr3 mRNA 87024202 87027122 87024202 ID=MsG0380016719.01.T01;Parent=MsG0380016719.01;Name=MsG0380016719.01.T01;_AED=0.48;_eAED=0.48;_QI=163|0.5|0.66|1|1|1|3|0|272
Chr3 exon 87024202 87024708 87024202 ID=MsG0380016719.01.T01:exon:22040;Parent=MsG0380016719.01.T01
Chr3 exon 87024795 87024927 87024795 ID=MsG0380016719.01.T01:exon:22041;Parent=MsG0380016719.01.T01
Chr3 exon 87026781 87027122 87026781 ID=MsG0380016719.01.T01:exon:22042;Parent=MsG0380016719.01.T01
Chr3 five_prime_UTR 87024202 87024364 87024202 ID=MsG0380016719.01.T01:five_prime_utr;Parent=MsG0380016719.01.T01
Chr3 CDS 87024365 87024708 87024365 ID=MsG0380016719.01.T01:cds;Parent=MsG0380016719.01.T01
Chr3 CDS 87024795 87024927 87024795 ID=MsG0380016719.01.T01:cds;Parent=MsG0380016719.01.T01
Chr3 CDS 87026781 87027122 87026781 ID=MsG0380016719.01.T01:cds;Parent=MsG0380016719.01.T01
Gene Sequence

>MsG0380016719.01.T01

ATGTCGTCGTTCCCGTTCCACCGTCGATCTCAATCGGAGGTACATTTCCGAATCCCCGACGATTTCGACCTCGAAATGGATCCCTTCGACTTCGACGCTTCTCCGCTCCAGTTCCAAGATCCACCACCACCGCAACAACACGACGATCTCCTTTCCTCTTACATCGATTCCGATAATTCCGGATCCAAACTCAATTCTCCTACCGCCGCTAATGCCGGTCACCGCCGTAGCAATTCCGCCGATACATCTTCTTCCTTGTTGTCTGAAGGAATCGAATCTAAGAAAGCTATGTCTCCTGATAAACTTGCTCAATTGTGGACCGTTGATCCTAAACGCGCCAAGAGGATTCTGGCGAATCGTCAATCCGCGGCGAGGTCGAAAGAGAGGAAAGCTTGTTATGTGGTTGAGCTTGAAAGGAAAATTCATACTCTTCAAACTGAAGCAACTACTCTTTCTGCTCAATTAAATCTTTTCCAGGCTCAAGCTTGCTACTGGAGAGGTACCAACCATGCTGATACCTATGGTTTGGGAATGCACCAATTTTCATATTCTCAAGCTTCATCCTTCATGCACCAACCACAACATGGTCCAAACGATCTTAGGGCCATGCAAATGCAACATTTTCATTCCCTCTCATCTAATGGATCCAGTCCCCACCAGCCTCAGTTTGATCTACCCACTTCGTATGATTTGTCGGAAATGTTGTCAAGTGATTCTATCGGCCAATTTCAGGGGCTGGACATTGGCAACAGGGTTTCTCATGTTCTGATGCCTGATGGTCCCTCCGTTTCTGTTAATAAAACCAACAACGCCTTTTGA
Protein sequence

>MsG0380016719.01.T01

MSSFPFHRRSQSEVHFRIPDDFDLEMDPFDFDASPLQFQDPPPPQQHDDLLSSYIDSDNSGSKLNSPTAANAGHRRSNSADTSSSLLSEGIESKKAMSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVVELERKIHTLQTEATTLSAQLNLFQAQACYWRGTNHADTYGLGMHQFSYSQASSFMHQPQHGPNDLRAMQMQHFHSLSSNGSSPHQPQFDLPTSYDLSEMLSSDSIGQFQGLDIGNRVSHVLMPDGPSVSVNKTNNAF*