AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012835.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012835.01.T01 MTR_3g032530 84.574 376 2 2 1 376 1 320 0.0 634
MsG0380012835.01.T01 MTR_3g032530 90.461 304 1 1 73 376 2 277 0.0 562
MsG0380012835.01.T01 MTR_3g114780 40.196 306 139 4 73 375 74 338 1.05e-72 231
MsG0380012835.01.T01 MTR_7g012060 40.146 137 46 4 160 263 20 153 1.44e-22 93.2
MsG0380012835.01.T01 MTR_6g069600 32.203 118 78 1 142 259 280 395 5.77e-13 70.5
MsG0380012835.01.T01 MTR_1g014690 30.400 125 86 1 152 276 75 198 4.26e-12 66.6
MsG0380012835.01.T01 MTR_1g014690 30.400 125 86 1 152 276 130 253 4.62e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012835.01.T01 AT5G13710 72.872 376 46 2 1 376 1 320 0.0 561
MsG0380012835.01.T01 AT5G13710 72.872 376 46 2 1 376 1 320 0.0 561
MsG0380012835.01.T01 AT1G20330 40.391 307 139 4 73 376 74 339 8.43e-76 239
MsG0380012835.01.T01 AT1G76090 39.088 307 143 4 73 376 74 339 7.55e-73 231
MsG0380012835.01.T01 AT1G48600 31.176 170 105 5 139 307 272 430 2.36e-13 71.6
MsG0380012835.01.T01 AT1G48600 31.176 170 105 5 139 307 256 414 2.45e-13 71.6
MsG0380012835.01.T01 AT1G73600 35.088 114 72 1 146 259 291 402 3.66e-13 71.2
MsG0380012835.01.T01 AT1G73600 35.088 114 72 1 146 259 277 388 3.73e-13 70.9
MsG0380012835.01.T01 AT3G18000 31.288 163 103 4 145 307 277 430 4.77e-13 70.9
MsG0380012835.01.T01 AT1G64970 34.615 104 68 0 154 257 130 233 6.32e-13 69.7

Find 87 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATGTTGGTTGTGGTATT+GGG 0.139062 3:-25317519 MsG0380012835.01.T01:CDS
AATCGAGAAATTTCTCTTAA+TGG 0.184007 3:+25317493 None:intergenic
TTGGATGTTGGTTGTGGTAT+TGG 0.186951 3:-25317520 MsG0380012835.01.T01:CDS
CAGAAGCAATACCATATTTC+TGG 0.200578 3:+25314351 None:intergenic
TAAGAGAAATTTCTCGATTC+AGG 0.202299 3:-25317489 MsG0380012835.01.T01:intron
AAGTGAAATGGGAGAGAAAA+TGG 0.285743 3:+25320705 None:intergenic
TGCAGCTCGACATCTGTTAC+AGG 0.301259 3:-25317030 MsG0380012835.01.T01:intron
AGATCTTATGATGTTCCTTT+TGG 0.304861 3:+25317910 None:intergenic
ATGGACACCTTGTTGCAAAA+TGG 0.313547 3:+25317814 None:intergenic
TCTTCCTTGGTATTTGCCTT+TGG 0.319508 3:-25314431 MsG0380012835.01.T01:CDS
CAGGCACTCAATCGCAAAAC+TGG 0.331030 3:-25316643 MsG0380012835.01.T01:CDS
ATGGATTTAGCTTCGAATCT+AGG 0.353597 3:-25320600 MsG0380012835.01.T01:CDS
CACTTCCTTGCTTTACAACT+TGG 0.357247 3:-25317672 MsG0380012835.01.T01:CDS
AAAGATGAAGAAAAGTGAAA+TGG 0.358006 3:+25320693 None:intergenic
GAAAGCTAATTATAGTGATA+TGG 0.367025 3:-25318667 MsG0380012835.01.T01:intron
GGATGTTGGTTGTGGTATTG+GGG 0.388964 3:-25317518 MsG0380012835.01.T01:CDS
ATACCTTTCCCCTGGTGATC+TGG 0.394747 3:+25316989 None:intergenic
GTGAAGGCTCTGGAGTTTGT+TGG 0.407221 3:-25314026 MsG0380012835.01.T01:CDS
TAGAGCTTCAAGACACTTTG+TGG 0.411789 3:+25314938 None:intergenic
AAGATGAAGAAAAGTGAAAT+GGG 0.414271 3:+25320694 None:intergenic
GCTAAATCCATTGCTTGAAA+AGG 0.421531 3:+25320612 None:intergenic
AATATTTCACATACAGCATC+TGG 0.437219 3:+25315468 None:intergenic
TGAACCCTTTGACTCCCCTT+CGG 0.452704 3:+25313996 None:intergenic
AAAGATGAAAACCTTCTGTC+CGG 0.459180 3:+25317641 None:intergenic
CATCGGACTCTCCTCTTCCT+TGG 0.471548 3:-25314444 MsG0380012835.01.T01:CDS
TCTTCCGATGCAGATGGGTA+GGG 0.476834 3:-25317728 MsG0380012835.01.T01:CDS
TCAATTTGATCACTTCCAAA+AGG 0.479285 3:-25317925 MsG0380012835.01.T01:CDS
ATACCATATTTCTGGTGAAA+AGG 0.482576 3:+25314359 None:intergenic
CTGCAGGCAGAAATTGAGAT+TGG 0.490804 3:-25314987 MsG0380012835.01.T01:intron
GCTGCAGAGGGTCTAGTTGA+AGG 0.505379 3:-25313957 MsG0380012835.01.T01:CDS
ACATTTGTAGGTGAAGGCTC+TGG 0.507945 3:-25314036 MsG0380012835.01.T01:intron
GAGAAGTATCATGCATCCTA+TGG 0.508363 3:-25318708 MsG0380012835.01.T01:CDS
CTTCCGATGCAGATGGGTAG+GGG 0.508765 3:-25317727 MsG0380012835.01.T01:CDS
TTGCACCGAAGGGGAGTCAA+AGG 0.512975 3:-25314001 MsG0380012835.01.T01:CDS
TTTGTATGTGAAGGTCATAT+GGG 0.514447 3:-25314479 MsG0380012835.01.T01:intron
AGCTTCCGTCTAACGGCTGT+TGG 0.514924 3:-25314385 MsG0380012835.01.T01:CDS
TACAGCATCTGGTGCATGGC+AGG 0.521675 3:+25315479 None:intergenic
TAAGCAGCAAAACATTGGCC+AGG 0.524306 3:+25315147 None:intergenic
GCAGAAATTGAGATTGGTGA+TGG 0.534551 3:-25314981 MsG0380012835.01.T01:CDS
GGTTCAAGATTTCCTTGAGA+AGG 0.535966 3:-25313979 MsG0380012835.01.T01:CDS
TTCTTCCGATGCAGATGGGT+AGG 0.537612 3:-25317729 MsG0380012835.01.T01:CDS
GACCCTCTGCAGCCTTCTCA+AGG 0.541641 3:+25313967 None:intergenic
TTTGTGGTCAATCTAATGTC+AGG 0.541951 3:+25314954 None:intergenic
ACTTAGCAGCTTCCGTCTAA+CGG 0.542702 3:-25314392 MsG0380012835.01.T01:CDS
TTCATCCTCTTGACCTCCAT+AGG 0.544369 3:+25318692 None:intergenic
GGCGTCCAACAGCCGTTAGA+CGG 0.545051 3:+25314380 None:intergenic
CTTGAAGCTCTAAAGCAAGC+AGG 0.547652 3:-25314927 MsG0380012835.01.T01:CDS
TGGTCTTAAGCCCGGACAGA+AGG 0.551005 3:-25317652 MsG0380012835.01.T01:intron
TTACAACTTGGTCTTAAGCC+CGG 0.554828 3:-25317660 MsG0380012835.01.T01:CDS
TTCCTTGAGAAGGCTGCAGA+GGG 0.556231 3:-25313969 MsG0380012835.01.T01:CDS
AAGATGAAAACCTTCTGTCC+GGG 0.556269 3:+25317642 None:intergenic
ATTCATAAGCAGCAAAACAT+TGG 0.559750 3:+25315142 None:intergenic
AAAGGCAAATACCAAGGAAG+AGG 0.560010 3:+25314433 None:intergenic
ATAATGAGTACCAGATCACC+AGG 0.560207 3:-25316999 MsG0380012835.01.T01:CDS
GTTTGTTGGACTTGCACCGA+AGG 0.560690 3:-25314012 MsG0380012835.01.T01:CDS
ATGGAGGTCAAGAGGATGAA+AGG 0.562038 3:-25318689 MsG0380012835.01.T01:CDS
AGATGGTGAACTCACGTGGA+TGG 0.564117 3:+25320743 None:intergenic
CACATACAGCATCTGGTGCA+TGG 0.575106 3:+25315475 None:intergenic
TCAAAACTATTGTCTTCGAA+TGG 0.577172 3:+25315525 None:intergenic
CAGAAATTGAGATTGGTGAT+GGG 0.583752 3:-25314980 MsG0380012835.01.T01:CDS
TTTCCTTGAGAAGGCTGCAG+AGG 0.588645 3:-25313970 MsG0380012835.01.T01:CDS
GGAATCAAATGTGATAAAGA+TGG 0.592732 3:+25320726 None:intergenic
GAAAGAGACGCACTTATCGA+CGG 0.593812 3:+25320545 None:intergenic
GATGTTGGTTGTGGTATTGG+GGG 0.596492 3:-25317517 MsG0380012835.01.T01:CDS
TAAGACCAAGTTGTAAAGCA+AGG 0.600321 3:+25317667 None:intergenic
GTACCAGATCACCAGGGGAA+AGG 0.600780 3:-25316992 MsG0380012835.01.T01:intron
TTTGTTGGACTTGCACCGAA+GGG 0.601946 3:-25314011 MsG0380012835.01.T01:CDS
TGCATCCTATGGAGGTCAAG+AGG 0.610680 3:-25318697 MsG0380012835.01.T01:CDS
CAAAACACATACCTTTCCCC+TGG 0.613010 3:+25316981 None:intergenic
TGCACCGAAGGGGAGTCAAA+GGG 0.614024 3:-25314000 MsG0380012835.01.T01:CDS
AGCATCTGGTGCATGGCAGG+TGG 0.619604 3:+25315482 None:intergenic
GAGAAGTGACTCTTGTCCAA+AGG 0.629432 3:+25314415 None:intergenic
ATTCCCCTACCCATCTGCAT+CGG 0.633666 3:+25317724 None:intergenic
GCAGAGGGTCTAGTTGAAGG+TGG 0.639355 3:-25313954 MsG0380012835.01.T01:CDS
ATGGGAGAAAGATCTAGCAT+CGG 0.642273 3:-25314461 MsG0380012835.01.T01:CDS
TTGTTGGACTTGCACCGAAG+GGG 0.642356 3:-25314010 MsG0380012835.01.T01:CDS
AAGTATCATGCATCCTATGG+AGG 0.651186 3:-25318705 MsG0380012835.01.T01:CDS
CAAGACTTGCAACTTCGTCA+AGG 0.656952 3:-25316614 MsG0380012835.01.T01:intron
GATTTAGCTTCGAATCTAGG+TGG 0.658338 3:-25320597 MsG0380012835.01.T01:CDS
ATAAAGATGGTGAACTCACG+TGG 0.670107 3:+25320739 None:intergenic
ACTCAATCGCAAAACTGGAG+TGG 0.680106 3:-25316638 MsG0380012835.01.T01:CDS
TTGTCCAAAGGCAAATACCA+AGG 0.687515 3:+25314427 None:intergenic
ATATAATTAAAACTAACACA+TGG 0.689395 3:+25317948 None:intergenic
AATGAGTACCAGATCACCAG+GGG 0.700086 3:-25316997 MsG0380012835.01.T01:CDS
TAATGAGTACCAGATCACCA+GGG 0.727702 3:-25316998 MsG0380012835.01.T01:CDS
AGAGACGCACTTATCGACGG+CGG 0.740217 3:+25320548 None:intergenic
GTGTAATTTAGATCGAAACG+AGG 0.758490 3:-25320658 MsG0380012835.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTAAAAATATAATAA+TGG - Chr3:25314698-25314717 MsG0380012835.01.T01:intron 0.0%
!!! CAAAAATTTTAATAAGTTAA+TGG - Chr3:25315891-25315910 MsG0380012835.01.T01:intron 10.0%
!! AAGTATATTCTAAATTTGAT+TGG + Chr3:25316309-25316328 None:intergenic 15.0%
!! AATAAATAGTGAATAATCTA+AGG - Chr3:25319995-25320014 MsG0380012835.01.T01:intron 15.0%
!! AGATTATTCACTATTTATTT+AGG + Chr3:25319994-25320013 None:intergenic 15.0%
!! ATATAATTAAAACTAACACA+TGG + Chr3:25316744-25316763 None:intergenic 15.0%
!! TGTTATAAATTTACATTTGT+AGG - Chr3:25320641-25320660 MsG0380012835.01.T01:five_prime_UTR 15.0%
!! TTGAATAATAATGCATTTAT+TGG + Chr3:25314912-25314931 None:intergenic 15.0%
!!! AAGGTATAGAAAAAATTTTT+AGG - Chr3:25319633-25319652 MsG0380012835.01.T01:intron 15.0%
!!! AGAAATCATTGATTTATAAA+AGG + Chr3:25318105-25318124 None:intergenic 15.0%
!!! ATCAATGATTTCTATTTTTT+AGG - Chr3:25318112-25318131 MsG0380012835.01.T01:intron 15.0%
!!! ATCATTATCGTTTTATTATT+AGG + Chr3:25319083-25319102 None:intergenic 15.0%
!!! CTTTTTCTTTATTTGTTTTT+AGG - Chr3:25317144-25317163 MsG0380012835.01.T01:intron 15.0%
!!! GAGAACAATTTTAAAAATAT+TGG + Chr3:25318171-25318190 None:intergenic 15.0%
!!! TTTTTGTTTTTTGATTTTGA+AGG - Chr3:25314315-25314334 MsG0380012835.01.T01:intron 15.0%
!! AAAAAGAAATTTATCCAAAC+AGG + Chr3:25315466-25315485 None:intergenic 20.0%
!! AAAAGAAATTTATCCAAACA+GGG + Chr3:25315465-25315484 None:intergenic 20.0%
!! AAACACTAATTCCTATTTAT+AGG - Chr3:25319952-25319971 MsG0380012835.01.T01:intron 20.0%
!! AAATATATAATACTCGTGAA+AGG + Chr3:25319823-25319842 None:intergenic 20.0%
!! AAATATGCTGTATATTGAAT+TGG - Chr3:25315256-25315275 MsG0380012835.01.T01:intron 20.0%
!! AAGCTGAAAAAGTAAAAATA+AGG + Chr3:25314257-25314276 None:intergenic 20.0%
!! ATGTCCAAAAATGAATAAAA+TGG + Chr3:25316897-25316916 None:intergenic 20.0%
!! ATTAAGAATCATAATTGACA+TGG - Chr3:25319101-25319120 MsG0380012835.01.T01:intron 20.0%
!! CAAAATAATTGACAATACAT+GGG + Chr3:25319315-25319334 None:intergenic 20.0%
!! TAAGCATTTATCATGATAAA+CGG + Chr3:25315507-25315526 None:intergenic 20.0%
!! TACAATGTGAATACAAAATA+TGG + Chr3:25315434-25315453 None:intergenic 20.0%
!! TTGCTTACAAAAATCATTAA+GGG - Chr3:25317629-25317648 MsG0380012835.01.T01:intron 20.0%
!!! AAAATAAAGGTATGATATGA+AGG - Chr3:25319614-25319633 MsG0380012835.01.T01:intron 20.0%
!!! AATGATCAATACATTTTATC+AGG + Chr3:25315947-25315966 None:intergenic 20.0%
!!! ACTATTTTCATAAGATATCT+TGG - Chr3:25315598-25315617 MsG0380012835.01.T01:intron 20.0%
!!! ATAACATGATTTGTATAGAT+GGG - Chr3:25316714-25316733 MsG0380012835.01.T01:intron 20.0%
!!! ATGTTTTAGATTTTGTAGTA+AGG - Chr3:25315139-25315158 MsG0380012835.01.T01:CDS 20.0%
!!! CATATCATACCTTTATTTTT+TGG + Chr3:25319613-25319632 None:intergenic 20.0%
!!! CTTTATTTGTTTTTAGGTTT+TGG - Chr3:25317150-25317169 MsG0380012835.01.T01:intron 20.0%
!!! GATAAAATGTATTGATCATT+TGG - Chr3:25315947-25315966 MsG0380012835.01.T01:intron 20.0%
!!! GATATTATTCTAGAATATCT+TGG + Chr3:25320097-25320116 None:intergenic 20.0%
!!! GCTAATTATCAGTAATATTT+TGG + Chr3:25316071-25316090 None:intergenic 20.0%
!!! TAAGATCTTCATATATTTTC+AGG - Chr3:25316794-25316813 MsG0380012835.01.T01:intron 20.0%
!!! TATAACATGATTTGTATAGA+TGG - Chr3:25316713-25316732 MsG0380012835.01.T01:intron 20.0%
!!! TATTTTATTTAGACGTTGTT+TGG - Chr3:25318217-25318236 MsG0380012835.01.T01:intron 20.0%
!!! TTAATCTTATTTGATTATGC+AGG - Chr3:25319124-25319143 MsG0380012835.01.T01:intron 20.0%
!!! TTTTTGTATTATGCATAGTA+TGG - Chr3:25319488-25319507 MsG0380012835.01.T01:intron 20.0%
! AAACACATTATATTCACCTT+GGG - Chr3:25318557-25318576 MsG0380012835.01.T01:intron 25.0%
! AAAGATGAAGAAAAGTGAAA+TGG + Chr3:25313999-25314018 None:intergenic 25.0%
! AAATTTACATTTGTAGGTGA+AGG - Chr3:25320647-25320666 MsG0380012835.01.T01:five_prime_UTR 25.0%
! AACCAACAAAGTAAAAAATG+TGG + Chr3:25318954-25318973 None:intergenic 25.0%
! AACGTCTAAATAAAATATCC+AGG + Chr3:25318214-25318233 None:intergenic 25.0%
! AACTAAAGGTAAAACAAACA+AGG + Chr3:25317611-25317630 None:intergenic 25.0%
! AAGATGAAGAAAAGTGAAAT+GGG + Chr3:25313998-25314017 None:intergenic 25.0%
! AAGGCTAAATTTATTCTAGA+GGG + Chr3:25317917-25317936 None:intergenic 25.0%
! AATATGATGTTAGGTGAATA+AGG + Chr3:25314978-25314997 None:intergenic 25.0%
! AATCAAATGTGTTGGAAATA+GGG - Chr3:25320510-25320529 MsG0380012835.01.T01:intron 25.0%
! AATCGAGAAATTTCTCTTAA+TGG + Chr3:25317199-25317218 None:intergenic 25.0%
! AGCGAACATAAATATCATAA+AGG + Chr3:25316450-25316469 None:intergenic 25.0%
! CACAAAAAATGAGAAGAATA+CGG + Chr3:25318452-25318471 None:intergenic 25.0%
! CACAAAATTGGGTAATTAAT+AGG - Chr3:25314826-25314845 MsG0380012835.01.T01:intron 25.0%
! CACTGCAATATTTAATATTG+TGG + Chr3:25319410-25319429 None:intergenic 25.0%
! CCAAAATAATTGACAATACA+TGG + Chr3:25319316-25319335 None:intergenic 25.0%
! CTAAAATACTTTGATCTAAC+TGG - Chr3:25318005-25318024 MsG0380012835.01.T01:intron 25.0%
! GAAAGCTAATTATAGTGATA+TGG - Chr3:25316022-25316041 MsG0380012835.01.T01:intron 25.0%
! GCCTGTTAAACAAAAAAAAT+TGG + Chr3:25318031-25318050 None:intergenic 25.0%
! GTTGCTTACAAAAATCATTA+AGG - Chr3:25317628-25317647 MsG0380012835.01.T01:intron 25.0%
! TAAGGCTAAATTTATTCTAG+AGG + Chr3:25317918-25317937 None:intergenic 25.0%
! TAATCAAATGTGTTGGAAAT+AGG - Chr3:25320509-25320528 MsG0380012835.01.T01:intron 25.0%
! TAGTAAGGAAAAAAGAAGTA+TGG + Chr3:25319270-25319289 None:intergenic 25.0%
! TCATGGTTGTGTAATAAAAA+TGG + Chr3:25317825-25317844 None:intergenic 25.0%
! TGAAAAAGGGGTAAAAATTA+GGG - Chr3:25318660-25318679 MsG0380012835.01.T01:intron 25.0%
! TGCTTACAAAAATCATTAAG+GGG - Chr3:25317630-25317649 MsG0380012835.01.T01:intron 25.0%
! TGTATTCACATTGTAAACTT+GGG - Chr3:25315439-25315458 MsG0380012835.01.T01:intron 25.0%
! TTCAAAAACTAGATATGAGA+AGG + Chr3:25317764-25317783 None:intergenic 25.0%
! TTCTGTAATACTTTGTTACT+CGG - Chr3:25320432-25320451 MsG0380012835.01.T01:intron 25.0%
! TTGAAAAAGGGGTAAAAATT+AGG - Chr3:25318659-25318678 MsG0380012835.01.T01:intron 25.0%
! TTGTAATAAATAGCATATCG+CGG + Chr3:25317328-25317347 None:intergenic 25.0%
! TTGTATTCACATTGTAAACT+TGG - Chr3:25315438-25315457 MsG0380012835.01.T01:intron 25.0%
!! AAAAGTGTAAATTCACAATG+TGG + Chr3:25314187-25314206 None:intergenic 25.0%
!! ACAATAAGCTTTTCTTAGAA+AGG + Chr3:25318265-25318284 None:intergenic 25.0%
!! CCATGTATTGTCAATTATTT+TGG - Chr3:25319313-25319332 MsG0380012835.01.T01:intron 25.0%
!! GTCTATGTTTTCCTATAAAT+AGG + Chr3:25319966-25319985 None:intergenic 25.0%
!! GTGTCCATTTTATTCATTTT+TGG - Chr3:25316890-25316909 MsG0380012835.01.T01:intron 25.0%
!! TATGCCAAGATTTTAAATAG+TGG + Chr3:25319442-25319461 None:intergenic 25.0%
!! TCATTTCTTTTTGTATGTGA+AGG - Chr3:25320201-25320220 MsG0380012835.01.T01:intron 25.0%
!! TGATTTTTGTAAGCAACTAA+AGG + Chr3:25317625-25317644 None:intergenic 25.0%
!!! ACTTCTTTTTTCCTTACTAT+AGG - Chr3:25319271-25319290 MsG0380012835.01.T01:intron 25.0%
!!! ATTTATAGAGTTTTAAAGCC+TGG - Chr3:25319524-25319543 MsG0380012835.01.T01:intron 25.0%
!!! ATTTTTTTCGTTGAAGTTGT+GGG - Chr3:25319843-25319862 MsG0380012835.01.T01:intron 25.0%
!!! GAAACTTTTAGGAAACTTAA+AGG - Chr3:25318494-25318513 MsG0380012835.01.T01:intron 25.0%
!!! GATTTCTATTTTTTAGGAGT+GGG - Chr3:25318118-25318137 MsG0380012835.01.T01:intron 25.0%
!!! GCATTTTTGTTTTTGCATTT+TGG - Chr3:25320551-25320570 MsG0380012835.01.T01:intron 25.0%
!!! GCCAATTTTTTTTGTTTAAC+AGG - Chr3:25318027-25318046 MsG0380012835.01.T01:intron 25.0%
!!! TAAAAATTAGGGTTTGCTTT+TGG - Chr3:25318671-25318690 MsG0380012835.01.T01:CDS 25.0%
!!! TATTTTTTTCGTTGAAGTTG+TGG - Chr3:25319842-25319861 MsG0380012835.01.T01:intron 25.0%
!!! TCTAGTTTTTGAAGCTTTAT+AGG - Chr3:25317771-25317790 MsG0380012835.01.T01:CDS 25.0%
!!! TGATTTCTATTTTTTAGGAG+TGG - Chr3:25318117-25318136 MsG0380012835.01.T01:intron 25.0%
!!! TTTTTTCAGATTCTCTTCAT+AGG + Chr3:25315628-25315647 None:intergenic 25.0%
AAAAAGAAGCAATAATCCTG+TGG - Chr3:25314765-25314784 MsG0380012835.01.T01:intron 30.0%
AAATGTGGAGCAAATAACAA+TGG + Chr3:25318939-25318958 None:intergenic 30.0%
AAATTTCAAAGACACTGTTC+AGG + Chr3:25315845-25315864 None:intergenic 30.0%
AACTTTACATAACCAAAACG+TGG + Chr3:25315108-25315127 None:intergenic 30.0%
AATATTTCACATACAGCATC+TGG + Chr3:25319224-25319243 None:intergenic 30.0%
AATCCTTGGATCTAATCTAA+GGG - Chr3:25314632-25314651 MsG0380012835.01.T01:intron 30.0%
AATTTCCAATTGATATGGCA+TGG - Chr3:25316489-25316508 MsG0380012835.01.T01:intron 30.0%
ACTCTCTTATCTTTGTTCTT+TGG - Chr3:25318828-25318847 MsG0380012835.01.T01:intron 30.0%
ACTGAAAAAGATTGAATCCT+TGG - Chr3:25314618-25314637 MsG0380012835.01.T01:intron 30.0%
ACTGTCAACAATATGATGTT+AGG + Chr3:25314987-25315006 None:intergenic 30.0%
ATAAAGAATCTCTATGATGC+TGG - Chr3:25314484-25314503 MsG0380012835.01.T01:intron 30.0%
ATACTTATATGACAATCCTC+TGG - Chr3:25317870-25317889 MsG0380012835.01.T01:CDS 30.0%
ATCCAATCTTCATCTAACAA+TGG - Chr3:25316343-25316362 MsG0380012835.01.T01:intron 30.0%
ATGAACAACGTTACAAAACA+GGG + Chr3:25315728-25315747 None:intergenic 30.0%
ATTCATAAGCAGCAAAACAT+TGG + Chr3:25319550-25319569 None:intergenic 30.0%
ATTTAAGAGATCAGCCTAAT+TGG - Chr3:25320165-25320184 MsG0380012835.01.T01:intron 30.0%
ATTTCACATAGATCTCACTA+TGG + Chr3:25320481-25320500 None:intergenic 30.0%
CAAACGATAATCAAATGTGT+TGG - Chr3:25320502-25320521 MsG0380012835.01.T01:intron 30.0%
CATGTAGATTGCACAAAATT+GGG - Chr3:25314815-25314834 MsG0380012835.01.T01:intron 30.0%
CCAAGAACACCAAAAAATAA+AGG - Chr3:25319601-25319620 MsG0380012835.01.T01:intron 30.0%
GAAACACATTATATTCACCT+TGG - Chr3:25318556-25318575 MsG0380012835.01.T01:intron 30.0%
GAAGCAATTTCCAATTGATA+TGG - Chr3:25316484-25316503 MsG0380012835.01.T01:intron 30.0%
GGAATCAAATGTGATAAAGA+TGG + Chr3:25313966-25313985 None:intergenic 30.0%
GTAGATAGAAACCTATAGTA+AGG + Chr3:25319285-25319304 None:intergenic 30.0%
GTGTATAAAATTTATGCCAG+AGG + Chr3:25317889-25317908 None:intergenic 30.0%
GTTACACATTTATGTTGTTG+TGG - Chr3:25315376-25315395 MsG0380012835.01.T01:intron 30.0%
TAAAGAATCTCTATGATGCT+GGG - Chr3:25314485-25314504 MsG0380012835.01.T01:intron 30.0%
TAAGAGAAATTTCTCGATTC+AGG - Chr3:25317200-25317219 MsG0380012835.01.T01:intron 30.0%
TACAACTGACAACAATATGT+TGG + Chr3:25315317-25315336 None:intergenic 30.0%
TATCATCTCAAACAAAGTCT+AGG + Chr3:25315022-25315041 None:intergenic 30.0%
TATCATCTCAAACAATGTCT+AGG + Chr3:25315348-25315367 None:intergenic 30.0%
TCAAAACTATTGTCTTCGAA+TGG + Chr3:25319167-25319186 None:intergenic 30.0%
TCAATTTGATCACTTCCAAA+AGG - Chr3:25316764-25316783 MsG0380012835.01.T01:intron 30.0%
TCATGTAGATTGCACAAAAT+TGG - Chr3:25314814-25314833 MsG0380012835.01.T01:intron 30.0%
TGATCCTAAGAGATAATCTA+AGG - Chr3:25320036-25320055 MsG0380012835.01.T01:intron 30.0%
TGCTGTATATTGAATTGGAT+TGG - Chr3:25315261-25315280 MsG0380012835.01.T01:intron 30.0%
TTGTAAAGACTCATTCATAG+TGG - Chr3:25318725-25318744 MsG0380012835.01.T01:intron 30.0%
TTGTACAAAATGTGTCATGT+TGG - Chr3:25314886-25314905 MsG0380012835.01.T01:intron 30.0%
TTTAGGAAACTTAAAGGCTA+AGG - Chr3:25318500-25318519 MsG0380012835.01.T01:intron 30.0%
TTTCACATAGATCTCACTAT+GGG + Chr3:25320480-25320499 None:intergenic 30.0%
TTTCTCTCTTGATTTCTCTT+AGG - Chr3:25318612-25318631 MsG0380012835.01.T01:intron 30.0%
TTTGTATGTGAAGGTCATAT+GGG - Chr3:25320210-25320229 MsG0380012835.01.T01:intron 30.0%
! AATCTTTCCATTTTGCAACA+AGG - Chr3:25316868-25316887 MsG0380012835.01.T01:intron 30.0%
! AGATCTTATGATGTTCCTTT+TGG + Chr3:25316782-25316801 None:intergenic 30.0%
! CTTTGCATTGTGAGATTTTA+AGG + Chr3:25318296-25318315 None:intergenic 30.0%
! GCATCCACTATTTAAAATCT+TGG - Chr3:25319435-25319454 MsG0380012835.01.T01:intron 30.0%
! TGTACATAGCTGAGAATTTT+CGG - Chr3:25320578-25320597 MsG0380012835.01.T01:CDS 30.0%
! TTCCTAAAAGTTTCCACTTT+TGG + Chr3:25318488-25318507 None:intergenic 30.0%
! TTTTCAACAACAGACAATCT+AGG - Chr3:25316395-25316414 MsG0380012835.01.T01:intron 30.0%
! TTTTGTATGTGAAGGTCATA+TGG - Chr3:25320209-25320228 MsG0380012835.01.T01:intron 30.0%
!! AATGTTTTGCTGCTTATGAA+TGG - Chr3:25319549-25319568 MsG0380012835.01.T01:intron 30.0%
!! AGTGTATAGCTTTGAACTTT+GGG - Chr3:25314663-25314682 MsG0380012835.01.T01:intron 30.0%
!! ATACCATATTTCTGGTGAAA+AGG + Chr3:25320333-25320352 None:intergenic 30.0%
!! CTTAAAACCTTTTCAAGCAA+TGG - Chr3:25314070-25314089 MsG0380012835.01.T01:intron 30.0%
!! GCTAAGGTTTGATTACTTTT+GGG - Chr3:25318516-25318535 MsG0380012835.01.T01:intron 30.0%
!! TAGTGTATAGCTTTGAACTT+TGG - Chr3:25314662-25314681 MsG0380012835.01.T01:intron 30.0%
!! TTTGTTCTTTGGTTTGATTG+TGG - Chr3:25318839-25318858 MsG0380012835.01.T01:intron 30.0%
!!! ACTTTGTTGGTTTTGACAAA+GGG - Chr3:25318962-25318981 MsG0380012835.01.T01:intron 30.0%
!!! ATGTTCGCTCTTTTTCAATA+TGG - Chr3:25316461-25316480 MsG0380012835.01.T01:intron 30.0%
!!! CCTTTATTTTTTGGTGTTCT+TGG + Chr3:25319604-25319623 None:intergenic 30.0%
!!! CTCCACATTTTTTACTTTGT+TGG - Chr3:25318949-25318968 MsG0380012835.01.T01:intron 30.0%
!!! GTATTGATCATTTGGTTTTC+AGG - Chr3:25315955-25315974 MsG0380012835.01.T01:intron 30.0%
!!! TACTTTGTTGGTTTTGACAA+AGG - Chr3:25318961-25318980 MsG0380012835.01.T01:intron 30.0%
!!! TGTTCGCTCTTTTTCAATAT+GGG - Chr3:25316462-25316481 MsG0380012835.01.T01:intron 30.0%
!!! TGTTTTTAGGTTTTGGATGT+TGG - Chr3:25317157-25317176 MsG0380012835.01.T01:intron 30.0%
!!! TTTTGGTGTTCTTGGTTATT+GGG + Chr3:25319596-25319615 None:intergenic 30.0%
!!! TTTTTGGTGTTCTTGGTTAT+TGG + Chr3:25319597-25319616 None:intergenic 30.0%
AAACTCCCATTTAGCCAATT+AGG + Chr3:25320182-25320201 None:intergenic 35.0%
AAAGATGAAAACCTTCTGTC+CGG + Chr3:25317051-25317070 None:intergenic 35.0%
AACCAAATCCAAATCGGAAA+AGG + Chr3:25316205-25316224 None:intergenic 35.0%
AACCATGATGCATTGTGTTT+AGG - Chr3:25317837-25317856 MsG0380012835.01.T01:CDS 35.0%
AAGACTGTAAACTTACCCTA+GGG - Chr3:25320065-25320084 MsG0380012835.01.T01:intron 35.0%
AAGTGAAATGGGAGAGAAAA+TGG + Chr3:25313987-25314006 None:intergenic 35.0%
AATATCTTGGTTTATCCCCT+AGG + Chr3:25320084-25320103 None:intergenic 35.0%
AATATTGTGGTCAAGTGTGA+AGG + Chr3:25319397-25319416 None:intergenic 35.0%
ACTGACAACAATATGTTGGT+AGG + Chr3:25315313-25315332 None:intergenic 35.0%
AGAAGAATACGGCTGAAATA+TGG + Chr3:25318441-25318460 None:intergenic 35.0%
AGTCAACAAAACTCTGTTGT+TGG - Chr3:25316252-25316271 MsG0380012835.01.T01:intron 35.0%
ATATCTTGGTTTATCCCCTA+GGG + Chr3:25320083-25320102 None:intergenic 35.0%
ATCAGCCTAATTGGCTAAAT+GGG - Chr3:25320174-25320193 MsG0380012835.01.T01:intron 35.0%
ATCGTTCGATCTTGATCATA+TGG - Chr3:25315405-25315424 MsG0380012835.01.T01:intron 35.0%
ATGGCATGGAAACAATATCA+TGG - Chr3:25316503-25316522 MsG0380012835.01.T01:intron 35.0%
ATGTTTCCACAGCCTTAATT+AGG - Chr3:25319371-25319390 MsG0380012835.01.T01:intron 35.0%
ATTGACGAGAATTCGTAAGA+TGG + Chr3:25317238-25317257 None:intergenic 35.0%
ATTTAGACGTTGTTTGGATG+AGG - Chr3:25318223-25318242 MsG0380012835.01.T01:intron 35.0%
CAATCTTCATCTAACAATGG+AGG - Chr3:25316346-25316365 MsG0380012835.01.T01:intron 35.0%
CAGAAGCAATACCATATTTC+TGG + Chr3:25320341-25320360 None:intergenic 35.0%
CATGAACAACGTTACAAAAC+AGG + Chr3:25315729-25315748 None:intergenic 35.0%
CATTTATGTTGTTGTGGATC+TGG - Chr3:25315382-25315401 MsG0380012835.01.T01:intron 35.0%
CCAGGTGTAACATTTATAAC+TGG + Chr3:25318196-25318215 None:intergenic 35.0%
CCAGTTATAAATGTTACACC+TGG - Chr3:25318193-25318212 MsG0380012835.01.T01:intron 35.0%
CGTACCTTAGATTATCTCTT+AGG + Chr3:25320043-25320062 None:intergenic 35.0%
CTAAACTGGGTAAACAATCT+TGG - Chr3:25318790-25318809 MsG0380012835.01.T01:intron 35.0%
CTCCATTGTTAGATGAAGAT+TGG + Chr3:25316348-25316367 None:intergenic 35.0%
CTGTGGAAACATCAAAAATC+TGG + Chr3:25319363-25319382 None:intergenic 35.0%
GAACAAAGATAAGAGAGTAG+AGG + Chr3:25318826-25318845 None:intergenic 35.0%
GAATCCTTGGATCTAATCTA+AGG - Chr3:25314631-25314650 MsG0380012835.01.T01:intron 35.0%
GAGGTCAATTTCAATTAGCA+GGG - Chr3:25315801-25315820 MsG0380012835.01.T01:intron 35.0%
GCTAAATCCATTGCTTGAAA+AGG + Chr3:25314080-25314099 None:intergenic 35.0%
GGTGTAACATTTATAACTGG+AGG + Chr3:25318193-25318212 None:intergenic 35.0%
GTGTAATTTAGATCGAAACG+AGG - Chr3:25314031-25314050 MsG0380012835.01.T01:intron 35.0%
GTTGAGAGAGACTTGAAAAA+GGG - Chr3:25318647-25318666 MsG0380012835.01.T01:intron 35.0%
TAAGACCAAGTTGTAAAGCA+AGG + Chr3:25317025-25317044 None:intergenic 35.0%
TAAGACTGTAAACTTACCCT+AGG - Chr3:25320064-25320083 MsG0380012835.01.T01:intron 35.0%
TAATCTTGAGAGACCAAAAG+TGG - Chr3:25318472-25318491 MsG0380012835.01.T01:intron 35.0%
TAGAACAAATCAAGCAACCT+AGG + Chr3:25318877-25318896 None:intergenic 35.0%
TAGCATTGTAGCATCACTAT+TGG + Chr3:25317271-25317290 None:intergenic 35.0%
TCAGATGAACATAGTCACAT+CGG - Chr3:25315170-25315189 MsG0380012835.01.T01:CDS 35.0%
TCGCACTTGATTTATCAAGT+CGG - Chr3:25317508-25317527 MsG0380012835.01.T01:CDS 35.0%
TCGTTCGATCTTGATCATAT+GGG - Chr3:25315406-25315425 MsG0380012835.01.T01:intron 35.0%
TCTTGTTAGGACAACAAAAC+TGG + Chr3:25317459-25317478 None:intergenic 35.0%
TGAACAACGTTACAAAACAG+GGG + Chr3:25315727-25315746 None:intergenic 35.0%
TGAGGTCAATTTCAATTAGC+AGG - Chr3:25315800-25315819 MsG0380012835.01.T01:intron 35.0%
TGCAGTATTATTGTCAATCG+CGG + Chr3:25317416-25317435 None:intergenic 35.0%
TGTATGACTGTAAATGTGTG+AGG - Chr3:25315782-25315801 MsG0380012835.01.T01:intron 35.0%
TGTTGAGAGAGACTTGAAAA+AGG - Chr3:25318646-25318665 MsG0380012835.01.T01:intron 35.0%
TGTTTCCATGCCATATCAAT+TGG + Chr3:25316497-25316516 None:intergenic 35.0%
TTGAGAGAGACTTGAAAAAG+GGG - Chr3:25318648-25318667 MsG0380012835.01.T01:intron 35.0%
TTTGTGGTCAATCTAATGTC+AGG + Chr3:25319738-25319757 None:intergenic 35.0%
! AAGCTTTTATGAGTTTGGCT+GGG - Chr3:25316842-25316861 MsG0380012835.01.T01:intron 35.0%
! ACACTGTTCAGGTTAACTTA+AGG + Chr3:25315834-25315853 None:intergenic 35.0%
! ATATTGTTGCTTGGACTGTT+TGG - Chr3:25318903-25318922 MsG0380012835.01.T01:intron 35.0%
! ATGGATTTAGCTTCGAATCT+AGG - Chr3:25314089-25314108 MsG0380012835.01.T01:intron 35.0%
! CAGAAATTGAGATTGGTGAT+GGG - Chr3:25319709-25319728 MsG0380012835.01.T01:intron 35.0%
! CTAGGTTGAATATTGTTGCT+TGG - Chr3:25318894-25318913 MsG0380012835.01.T01:intron 35.0%
! GACCAAAAGTGGAAACTTTT+AGG - Chr3:25318483-25318502 MsG0380012835.01.T01:intron 35.0%
! GATACGAAGAAATTAGCTTC+AGG + Chr3:25318703-25318722 None:intergenic 35.0%
! GGCTAAGGTTTGATTACTTT+TGG - Chr3:25318515-25318534 MsG0380012835.01.T01:intron 35.0%
! TGTGGTTTTTCTATACACCT+AGG - Chr3:25318857-25318876 MsG0380012835.01.T01:intron 35.0%
! TTTTCGTGCTGAAAACTCAA+TGG - Chr3:25320610-25320629 MsG0380012835.01.T01:exon 35.0%
!! ACCGTTTGATTTTGATCAGA+CGG - Chr3:25315079-25315098 MsG0380012835.01.T01:intron 35.0%
!! AGTTTGTACGTCTGGAATTT+TGG - Chr3:25318314-25318333 MsG0380012835.01.T01:intron 35.0%
!! GTGTATAGCTTTGAACTTTG+GGG - Chr3:25314664-25314683 MsG0380012835.01.T01:intron 35.0%
!! TACTTTTGGGTGAGATTCTT+GGG - Chr3:25318529-25318548 MsG0380012835.01.T01:intron 35.0%
!! TAGGTTGCTTGATTTGTTCT+AGG - Chr3:25318876-25318895 MsG0380012835.01.T01:intron 35.0%
!! TTACTTTTGGGTGAGATTCT+TGG - Chr3:25318528-25318547 MsG0380012835.01.T01:intron 35.0%
!! TTTCCGATTTGGATTTGGTT+CGG - Chr3:25316205-25316224 MsG0380012835.01.T01:intron 35.0%
!!! AACCTTTTCCGATTTGGATT+TGG - Chr3:25316200-25316219 MsG0380012835.01.T01:intron 35.0%
!!! TCTTTTTTATCCAACACCAC+AGG + Chr3:25314784-25314803 None:intergenic 35.0%
!!! TTTTGAAGCTTTATAGGTGC+TGG - Chr3:25317777-25317796 MsG0380012835.01.T01:CDS 35.0%
AAAGGCAAATACCAAGGAAG+AGG + Chr3:25320259-25320278 None:intergenic 40.0%
AAATCAGAATCATTCCACGC+AGG + Chr3:25314868-25314887 None:intergenic 40.0%
AAGACAAAATTCCTTGCTGC+AGG - Chr3:25319686-25319705 MsG0380012835.01.T01:intron 40.0%
AAGATGAAAACCTTCTGTCC+GGG + Chr3:25317050-25317069 None:intergenic 40.0%
AAGCAATAATCCTGTGGTGT+TGG - Chr3:25314771-25314790 MsG0380012835.01.T01:intron 40.0%
AAGTATCATGCATCCTATGG+AGG - Chr3:25315984-25316003 MsG0380012835.01.T01:intron 40.0%
AGACTGTAAACTTACCCTAG+GGG - Chr3:25320066-25320085 MsG0380012835.01.T01:intron 40.0%
AGGTCAATTTGGGCTAAACT+GGG - Chr3:25318777-25318796 MsG0380012835.01.T01:intron 40.0%
ATAAAGATGGTGAACTCACG+TGG + Chr3:25313953-25313972 None:intergenic 40.0%
ATAATGAGTACCAGATCACC+AGG - Chr3:25317690-25317709 MsG0380012835.01.T01:CDS 40.0%
ATGGACACCTTGTTGCAAAA+TGG + Chr3:25316878-25316897 None:intergenic 40.0%
ATGGGAGAAAGATCTAGCAT+CGG - Chr3:25320228-25320247 MsG0380012835.01.T01:intron 40.0%
ATTATTCAAAACCACCGAGC+TGG - Chr3:25314923-25314942 MsG0380012835.01.T01:CDS 40.0%
CAAAAGACGAGGAAACATAG+AGG + Chr3:25317583-25317602 None:intergenic 40.0%
CAAGTGTGAAGGCCTAATTA+AGG + Chr3:25319386-25319405 None:intergenic 40.0%
CAATGCAAAGTTTGTACGTC+TGG - Chr3:25318306-25318325 MsG0380012835.01.T01:intron 40.0%
CACTTCCTTGCTTTACAACT+TGG - Chr3:25317017-25317036 MsG0380012835.01.T01:CDS 40.0%
CATGGAAACAATATCATGGC+AGG - Chr3:25316507-25316526 MsG0380012835.01.T01:intron 40.0%
CCAAATTGACCTACATCTAG+GGG + Chr3:25318769-25318788 None:intergenic 40.0%
CCCAAATTGACCTACATCTA+GGG + Chr3:25318770-25318789 None:intergenic 40.0%
CCCGTCTGATCAAAATCAAA+CGG + Chr3:25315083-25315102 None:intergenic 40.0%
CCCTAGATGTAGGTCAATTT+GGG - Chr3:25318767-25318786 MsG0380012835.01.T01:intron 40.0%
CGTTCGATCTTGATCATATG+GGG - Chr3:25315407-25315426 MsG0380012835.01.T01:intron 40.0%
GATCAGCCTAATTGGCTAAA+TGG - Chr3:25320173-25320192 MsG0380012835.01.T01:intron 40.0%
GCAGAAATTGAGATTGGTGA+TGG - Chr3:25319708-25319727 MsG0380012835.01.T01:intron 40.0%
GCTACAATGCTATTGCATAG+TGG - Chr3:25317279-25317298 MsG0380012835.01.T01:intron 40.0%
GGTTCAAGATTTCCTTGAGA+AGG - Chr3:25320710-25320729 MsG0380012835.01.T01:five_prime_UTR 40.0%
TAATGAGTACCAGATCACCA+GGG - Chr3:25317691-25317710 MsG0380012835.01.T01:CDS 40.0%
TAGAGCTTCAAGACACTTTG+TGG + Chr3:25319754-25319773 None:intergenic 40.0%
TAGGTCAATTTGGGCTAAAC+TGG - Chr3:25318776-25318795 MsG0380012835.01.T01:intron 40.0%
TCAGCAGCAAAATCCAAAAC+TGG + Chr3:25314950-25314969 None:intergenic 40.0%
TCTCCCTTAGATTAGATCCA+AGG + Chr3:25314638-25314657 None:intergenic 40.0%
TCTTCCTTGGTATTTGCCTT+TGG - Chr3:25320258-25320277 MsG0380012835.01.T01:intron 40.0%
TGCCTAAACACAATGCATCA+TGG + Chr3:25317842-25317861 None:intergenic 40.0%
TTGGATCAAGACTGTGATTC+TGG - Chr3:25319332-25319351 MsG0380012835.01.T01:intron 40.0%
TTGTCCAAAGGCAAATACCA+AGG + Chr3:25320265-25320284 None:intergenic 40.0%
! AATGCTGAAGAGAGAGCTTT+TGG - Chr3:25319011-25319030 MsG0380012835.01.T01:intron 40.0%
! ACGCCTTTTCACCAGAAATA+TGG - Chr3:25320327-25320346 MsG0380012835.01.T01:intron 40.0%
! ACTTTTCTTCCGATGCAGAT+GGG - Chr3:25316956-25316975 MsG0380012835.01.T01:intron 40.0%
! AGCACTAACCTTTTCCGATT+TGG - Chr3:25316194-25316213 MsG0380012835.01.T01:intron 40.0%
! AGCTTTTATGAGTTTGGCTG+GGG - Chr3:25316843-25316862 MsG0380012835.01.T01:intron 40.0%
! CAAGCTTTTATGAGTTTGGC+TGG - Chr3:25316841-25316860 MsG0380012835.01.T01:intron 40.0%
! GATTTAGCTTCGAATCTAGG+TGG - Chr3:25314092-25314111 MsG0380012835.01.T01:intron 40.0%
! GCGACAAGCTTTTATGAGTT+TGG - Chr3:25316837-25316856 MsG0380012835.01.T01:intron 40.0%
! GGGTTGAAAAATGGGGTTTT+AGG - Chr3:25318362-25318381 MsG0380012835.01.T01:intron 40.0%
! GTTACACAGTTGCTTTGTTG+CGG - Chr3:25315050-25315069 MsG0380012835.01.T01:intron 40.0%
! GTTACTCGGTGAAATGAATG+TGG - Chr3:25320446-25320465 MsG0380012835.01.T01:intron 40.0%
! TACTTTTCTTCCGATGCAGA+TGG - Chr3:25316955-25316974 MsG0380012835.01.T01:intron 40.0%
! TGGATGTTGGTTGTGGTATT+GGG - Chr3:25317170-25317189 MsG0380012835.01.T01:intron 40.0%
! TTGGATGTTGGTTGTGGTAT+TGG - Chr3:25317169-25317188 MsG0380012835.01.T01:intron 40.0%
!! AAGACTCATTCATAGTGGAC+CGG - Chr3:25318730-25318749 MsG0380012835.01.T01:intron 40.0%
!! CCGTTTGATTTTGATCAGAC+GGG - Chr3:25315080-25315099 MsG0380012835.01.T01:intron 40.0%
!! CGTTTGATTTTGATCAGACG+GGG - Chr3:25315081-25315100 MsG0380012835.01.T01:intron 40.0%
!! GAGAAGTATCATGCATCCTA+TGG - Chr3:25315981-25316000 MsG0380012835.01.T01:intron 40.0%
!! TCTAAAGCAAGCAGGTTTTG+AGG - Chr3:25319770-25319789 MsG0380012835.01.T01:intron 40.0%
!! TTACAACTTGGTCTTAAGCC+CGG - Chr3:25317029-25317048 MsG0380012835.01.T01:intron 40.0%
!!! TAGGTTTTGGATGTTGGTTG+TGG - Chr3:25317163-25317182 MsG0380012835.01.T01:intron 40.0%
!!! TGCTTGGACTGTTTGGTTTT+TGG - Chr3:25318910-25318929 MsG0380012835.01.T01:intron 40.0%
AATCCAAAACTGGACCAGCT+CGG + Chr3:25314940-25314959 None:intergenic 45.0%
AATGAGTACCAGATCACCAG+GGG - Chr3:25317692-25317711 MsG0380012835.01.T01:CDS 45.0%
ACAAGGAAGAGCAAAAGACG+AGG + Chr3:25317594-25317613 None:intergenic 45.0%
ACATTTGTAGGTGAAGGCTC+TGG - Chr3:25320653-25320672 MsG0380012835.01.T01:five_prime_UTR 45.0%
ACTCAATCGCAAAACTGGAG+TGG - Chr3:25318051-25318070 MsG0380012835.01.T01:intron 45.0%
ACTTAGCAGCTTCCGTCTAA+CGG - Chr3:25320297-25320316 MsG0380012835.01.T01:intron 45.0%
ACTTGCAACTTCGTCAAGGT+CGG - Chr3:25318079-25318098 MsG0380012835.01.T01:intron 45.0%
AGACGAGGAAACATAGAGGA+TGG + Chr3:25317579-25317598 None:intergenic 45.0%
AGTGAGATCTCATCAGAGGA+AGG - Chr3:25318581-25318600 MsG0380012835.01.T01:intron 45.0%
ATGGAGGTCAAGAGGATGAA+AGG - Chr3:25316000-25316019 MsG0380012835.01.T01:intron 45.0%
CAAAACACATACCTTTCCCC+TGG + Chr3:25317711-25317730 None:intergenic 45.0%
CAAGACTTGCAACTTCGTCA+AGG - Chr3:25318075-25318094 MsG0380012835.01.T01:intron 45.0%
CCCCTAGATGTAGGTCAATT+TGG - Chr3:25318766-25318785 MsG0380012835.01.T01:intron 45.0%
CGACCGAACCAAATCCAAAT+CGG + Chr3:25316211-25316230 None:intergenic 45.0%
CTGCAGGCAGAAATTGAGAT+TGG - Chr3:25319702-25319721 MsG0380012835.01.T01:intron 45.0%
GAAAGAGACGCACTTATCGA+CGG + Chr3:25314147-25314166 None:intergenic 45.0%
GAACATAGTCACATCGGTAG+AGG - Chr3:25315176-25315195 MsG0380012835.01.T01:CDS 45.0%
GAGAAGTGACTCTTGTCCAA+AGG + Chr3:25320277-25320296 None:intergenic 45.0%
GCATCACTATTGGACAGCAT+TGG + Chr3:25317261-25317280 None:intergenic 45.0%
GCCCAAATTGACCTACATCT+AGG + Chr3:25318771-25318790 None:intergenic 45.0%
GCGAGTCATCTGATCTTGTT+AGG + Chr3:25317472-25317491 None:intergenic 45.0%
GGACAACAAAACTGGCAACT+AGG + Chr3:25317451-25317470 None:intergenic 45.0%
TAAGCAGCAAAACATTGGCC+AGG + Chr3:25319545-25319564 None:intergenic 45.0%
TGAAGGCCTAATTAAGGCTG+TGG + Chr3:25319380-25319399 None:intergenic 45.0%
TGATGAGATCTCACTACCCA+AGG + Chr3:25318576-25318595 None:intergenic 45.0%
TTACAAAACAGGGGTCTGCT+TGG + Chr3:25315718-25315737 None:intergenic 45.0%
TTCATCCTCTTGACCTCCAT+AGG + Chr3:25316000-25316019 None:intergenic 45.0%
TTCTCTGACTGCTGGGAATT+TGG - Chr3:25317551-25317570 MsG0380012835.01.T01:intron 45.0%
TTGGGTGAGATTCTTGGGTT+GGG - Chr3:25318534-25318553 MsG0380012835.01.T01:intron 45.0%
TTGTAAACTTGGGCCCTGTT+TGG - Chr3:25315449-25315468 MsG0380012835.01.T01:intron 45.0%
TTTGGGTGAGATTCTTGGGT+TGG - Chr3:25318533-25318552 MsG0380012835.01.T01:intron 45.0%
TTTGTTGGACTTGCACCGAA+GGG - Chr3:25320678-25320697 MsG0380012835.01.T01:five_prime_UTR 45.0%
! CTTTTATGAGTTTGGCTGGG+GGG - Chr3:25316845-25316864 MsG0380012835.01.T01:intron 45.0%
! GATGTTGGTTGTGGTATTGG+GGG - Chr3:25317172-25317191 MsG0380012835.01.T01:intron 45.0%
! GCTTTTATGAGTTTGGCTGG+GGG - Chr3:25316844-25316863 MsG0380012835.01.T01:intron 45.0%
! GGATGTTGGTTGTGGTATTG+GGG - Chr3:25317171-25317190 MsG0380012835.01.T01:intron 45.0%
!! CTTGAAGCTCTAAAGCAAGC+AGG - Chr3:25319762-25319781 MsG0380012835.01.T01:intron 45.0%
AAACAGGGGTCTGCTTGGAT+TGG + Chr3:25315713-25315732 None:intergenic 50.0%
AGCGTGATTCTCTGACTGCT+GGG - Chr3:25317544-25317563 MsG0380012835.01.T01:intron 50.0%
ATACCTTTCCCCTGGTGATC+TGG + Chr3:25317703-25317722 None:intergenic 50.0%
ATTCCCCTACCCATCTGCAT+CGG + Chr3:25316968-25316987 None:intergenic 50.0%
CACATACAGCATCTGGTGCA+TGG + Chr3:25319217-25319236 None:intergenic 50.0%
CAGGCACTCAATCGCAAAAC+TGG - Chr3:25318046-25318065 MsG0380012835.01.T01:intron 50.0%
CCACGCAGGATGATAAAGAC+TGG + Chr3:25314854-25314873 None:intergenic 50.0%
CCAGTCTTTATCATCCTGCG+TGG - Chr3:25314851-25314870 MsG0380012835.01.T01:intron 50.0%
CTCAATTTCTGCCTGCAGCA+AGG + Chr3:25319700-25319719 None:intergenic 50.0%
GGGTAGTGAGATCTCATCAG+AGG - Chr3:25318577-25318596 MsG0380012835.01.T01:intron 50.0%
TCTTCCGATGCAGATGGGTA+GGG - Chr3:25316961-25316980 MsG0380012835.01.T01:intron 50.0%
TGAACCCTTTGACTCCCCTT+CGG + Chr3:25320696-25320715 None:intergenic 50.0%
TGCAGCTCGACATCTGTTAC+AGG - Chr3:25317659-25317678 MsG0380012835.01.T01:CDS 50.0%
TGCATCCTATGGAGGTCAAG+AGG - Chr3:25315992-25316011 MsG0380012835.01.T01:intron 50.0%
TTCCTTGAGAAGGCTGCAGA+GGG - Chr3:25320720-25320739 MsG0380012835.01.T01:five_prime_UTR 50.0%
TTCTTCCGATGCAGATGGGT+AGG - Chr3:25316960-25316979 MsG0380012835.01.T01:intron 50.0%
TTGTTGGACTTGCACCGAAG+GGG - Chr3:25320679-25320698 MsG0380012835.01.T01:five_prime_UTR 50.0%
TTTCCTTGAGAAGGCTGCAG+AGG - Chr3:25320719-25320738 MsG0380012835.01.T01:five_prime_UTR 50.0%
! AGTCACATCGGTAGAGGCAT+AGG - Chr3:25315182-25315201 MsG0380012835.01.T01:CDS 50.0%
! GTTTGTTGGACTTGCACCGA+AGG - Chr3:25320677-25320696 MsG0380012835.01.T01:five_prime_UTR 50.0%
!! GTGAAGGCTCTGGAGTTTGT+TGG - Chr3:25320663-25320682 MsG0380012835.01.T01:five_prime_UTR 50.0%
!! TGCGAGGCGGGTTGAAAAAT+GGG - Chr3:25318354-25318373 MsG0380012835.01.T01:intron 50.0%
AGAGACGCACTTATCGACGG+CGG + Chr3:25314144-25314163 None:intergenic 55.0%
AGCTTCCGTCTAACGGCTGT+TGG - Chr3:25320304-25320323 MsG0380012835.01.T01:intron 55.0%
CAGCGTGATTCTCTGACTGC+TGG - Chr3:25317543-25317562 MsG0380012835.01.T01:intron 55.0%
CATCGGACTCTCCTCTTCCT+TGG - Chr3:25320245-25320264 MsG0380012835.01.T01:intron 55.0%
CTGCTCTCTCCCCTAGATGT+AGG - Chr3:25318757-25318776 MsG0380012835.01.T01:intron 55.0%
CTTCCGATGCAGATGGGTAG+GGG - Chr3:25316962-25316981 MsG0380012835.01.T01:intron 55.0%
GCAGAGGGTCTAGTTGAAGG+TGG - Chr3:25320735-25320754 MsG0380012835.01.T01:five_prime_UTR 55.0%
GCTGCAGAGGGTCTAGTTGA+AGG - Chr3:25320732-25320751 MsG0380012835.01.T01:five_prime_UTR 55.0%
GTACCAGATCACCAGGGGAA+AGG - Chr3:25317697-25317716 MsG0380012835.01.T01:CDS 55.0%
TACAGCATCTGGTGCATGGC+AGG + Chr3:25319213-25319232 None:intergenic 55.0%
TGCACCGAAGGGGAGTCAAA+GGG - Chr3:25320689-25320708 MsG0380012835.01.T01:five_prime_UTR 55.0%
TTGACACTGCATCATCCGCG+AGG - Chr3:25318389-25318408 MsG0380012835.01.T01:intron 55.0%
TTGCACCGAAGGGGAGTCAA+AGG - Chr3:25320688-25320707 MsG0380012835.01.T01:five_prime_UTR 55.0%
TTTCAACCCGCCTCGCAGAT+GGG + Chr3:25318351-25318370 None:intergenic 55.0%
! ATCAGACGGGGTCCACGTTT+TGG - Chr3:25315093-25315112 MsG0380012835.01.T01:CDS 55.0%
! TGGTCTTAAGCCCGGACAGA+AGG - Chr3:25317037-25317056 MsG0380012835.01.T01:intron 55.0%
! TGTTGACTGATGCAGCAGCG+TGG + Chr3:25316240-25316259 None:intergenic 55.0%
! TTTTCAACCCGCCTCGCAGA+TGG + Chr3:25318352-25318371 None:intergenic 55.0%
!! CTGCGAGGCGGGTTGAAAAA+TGG - Chr3:25318353-25318372 MsG0380012835.01.T01:intron 55.0%
!! GCGAGGCGGGTTGAAAAATG+GGG - Chr3:25318355-25318374 MsG0380012835.01.T01:intron 55.0%
ACCCGGAAGAACGTTGCAGC+AGG - Chr3:25318413-25318432 MsG0380012835.01.T01:intron 60.0%
AGCATCTGGTGCATGGCAGG+TGG + Chr3:25319210-25319229 None:intergenic 60.0%
ATGCCTCTGTCCCATCTGCG+AGG - Chr3:25318338-25318357 MsG0380012835.01.T01:intron 60.0%
CCAAAACTGGACCAGCTCGG+TGG + Chr3:25314937-25314956 None:intergenic 60.0%
CGCCTGCTGCAACGTTCTTC+CGG + Chr3:25318418-25318437 None:intergenic 60.0%
GACCCTCTGCAGCCTTCTCA+AGG + Chr3:25320725-25320744 None:intergenic 60.0%
GCCTGCTGCAACGTTCTTCC+GGG + Chr3:25318417-25318436 None:intergenic 60.0%
GGCGTCCAACAGCCGTTAGA+CGG + Chr3:25320312-25320331 None:intergenic 60.0%
TAGGGGAGAGAGCAGCTCTC+CGG + Chr3:25318752-25318771 None:intergenic 60.0%
! CCACCGAGCTGGTCCAGTTT+TGG - Chr3:25314934-25314953 MsG0380012835.01.T01:CDS 60.0%
ACGTTCTTCCGGGTGCCTCG+CGG + Chr3:25318407-25318426 None:intergenic 65.0%
CCTCTGTCCCATCTGCGAGG+CGG - Chr3:25318341-25318360 MsG0380012835.01.T01:intron 65.0%
CTCTGTCCCATCTGCGAGGC+GGG - Chr3:25318342-25318361 MsG0380012835.01.T01:intron 65.0%
! TGCATCATCCGCGAGGCACC+CGG - Chr3:25318396-25318415 MsG0380012835.01.T01:intron 65.0%
CCGCCTCGCAGATGGGACAG+AGG + Chr3:25318344-25318363 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 25313947 25320764 25313947 ID=MsG0380012835.01;Name=MsG0380012835.01
Chr3 mRNA 25313947 25320764 25313947 ID=MsG0380012835.01.T01;Parent=MsG0380012835.01;Name=MsG0380012835.01.T01;_AED=0.44;_eAED=0.48;_QI=142|0.9|0.81|1|0.8|0.81|11|0|376
Chr3 exon 25313947 25314048 25313947 ID=MsG0380012835.01.T01:exon:8204;Parent=MsG0380012835.01.T01
Chr3 exon 25314363 25314488 25314363 ID=MsG0380012835.01.T01:exon:8203;Parent=MsG0380012835.01.T01
Chr3 exon 25314920 25315003 25314920 ID=MsG0380012835.01.T01:exon:8202;Parent=MsG0380012835.01.T01
Chr3 exon 25315089 25315205 25315089 ID=MsG0380012835.01.T01:exon:8201;Parent=MsG0380012835.01.T01
Chr3 exon 25315482 25315565 25315482 ID=MsG0380012835.01.T01:exon:8200;Parent=MsG0380012835.01.T01
Chr3 exon 25316615 25316662 25316615 ID=MsG0380012835.01.T01:exon:8199;Parent=MsG0380012835.01.T01
Chr3 exon 25316993 25317047 25316993 ID=MsG0380012835.01.T01:exon:8198;Parent=MsG0380012835.01.T01
Chr3 exon 25317490 25317545 25317490 ID=MsG0380012835.01.T01:exon:8197;Parent=MsG0380012835.01.T01
Chr3 exon 25317653 25317979 25317653 ID=MsG0380012835.01.T01:exon:8196;Parent=MsG0380012835.01.T01
Chr3 exon 25318668 25318734 25318668 ID=MsG0380012835.01.T01:exon:8195;Parent=MsG0380012835.01.T01
Chr3 exon 25320558 25320764 25320558 ID=MsG0380012835.01.T01:exon:8194;Parent=MsG0380012835.01.T01
Chr3 five_prime_UTR 25320623 25320764 25320623 ID=MsG0380012835.01.T01:five_prime_utr;Parent=MsG0380012835.01.T01
Chr3 CDS 25320558 25320622 25320558 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25318668 25318734 25318668 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25317653 25317979 25317653 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25317490 25317545 25317490 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25316993 25317047 25316993 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25316615 25316662 25316615 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25315482 25315565 25315482 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25315089 25315205 25315089 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25314920 25315003 25314920 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25314363 25314488 25314363 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Chr3 CDS 25313947 25314048 25313947 ID=MsG0380012835.01.T01:cds;Parent=MsG0380012835.01.T01
Gene Sequence

>MsG0380012835.01.T01

ATGGATTTAGCTTCGAATCTAGGTGGAAAGATTGAAAAAGCTGAAGTTCTCTCCGCCGTCGATAAGTATGAGAAGTATCATGCATCCTATGGAGGTCAAGAGGATGAAAGGAAAGCTAATTATAGTGATATGATGGGAATGCCATGTGTTAGTTTTAATTATATTCAATTTGATCACTTCCAAAAGGAACATCATAAGATCTTCATATATTTTCAGGTTAATAAATACTATGATCTTGCGACAAGCTTTTATGAGTTTGGCTGGGGGGAATCTTTCCATTTTGCAACAAGGTGTCCATTTTATTCATTTTTGGACATAAATATTCACAATTTCAGTGTTAATTTGTTTGTGCTGATACTTTTCTTCCGATGCAGATGGGTAGGGGAATCTCTTAGAGAGAGCATCAAGCGACATGAACACTTCCTTGCTTTACAACTTGGTCTTAAGCCCGGACAGAAGGTTTTGGATGTTGGTTGTGGTATTGGGGGACCATTAAGAGAAATTTCTCGATTCAGCTCGACATCTGTTACAGGATTGAATAATAATGAGTACCAGATCACCAGGGGAAAGGCACTCAATCGCAAAACTGGAGTGGACAAGACTTGCAACTTCGTCAAGGCTGATTTCATGAAGATGCCATTCGAAGACAATAGTTTTGATGCAGTGTATGCTATTGAAGCCACCTGCCATGCACCAGATGCTTATGGATGCTACAAAGAGATTTATAGAGTTTTAAAGCCTGGCCAATGTTTTGCTGCTTATGAATGGTGCATGACTGATTCTTTTGATCCCAATAACCAAGAACACCAAAAAATAAAGGCAGAAATTGAGATTGGTGATGGGCTTCCTGACATTAGATTGACCACAAAGTGTCTTGAAGCTCTAAAGCAAGCAGGTTTTGAGGTCATATGGGAGAAAGATCTAGCATCGGACTCTCCTCTTCCTTGGTATTTGCCTTTGGACAAGAGTCACTTCTCACTTAGCAGCTTCCGTCTAACGGCTGTTGGACGCCTTTTCACCAGAAATATGGTGAAGGCTCTGGAGTTTGTTGGACTTGCACCGAAGGGGAGTCAAAGGGTTCAAGATTTCCTTGAGAAGGCTGCAGAGGGTCTAGTTGAAGGTGGAAAGTAA
Protein sequence

>MsG0380012835.01.T01

MDLASNLGGKIEKAEVLSAVDKYEKYHASYGGQEDERKANYSDMMGMPCVSFNYIQFDHFQKEHHKIFIYFQVNKYYDLATSFYEFGWGESFHFATRCPFYSFLDINIHNFSVNLFVLILFFRCRWVGESLRESIKRHEHFLALQLGLKPGQKVLDVGCGIGGPLREISRFSSTSVTGLNNNEYQITRGKALNRKTGVDKTCNFVKADFMKMPFEDNSFDAVYAIEATCHAPDAYGCYKEIYRVLKPGQCFAAYEWCMTDSFDPNNQEHQKIKAEIEIGDGLPDIRLTTKCLEALKQAGFEVIWEKDLASDSPLPWYLPLDKSHFSLSSFRLTAVGRLFTRNMVKALEFVGLAPKGSQRVQDFLEKAAEGLVEGGK*