AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016738.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016738.01.T01 MTR_3g094290 93.333 90 6 0 83 172 1 90 2.21e-49 157
MsG0380016738.01.T01 MTR_3g082730 38.938 113 53 5 45 145 164 272 1.40e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 49 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTTCATTTACCACGAAAT+TGG 0.221254 3:+87238731 None:intergenic
GAATCTACTCCTTCAGGTTC+TGG 0.242977 3:-87237726 MsG0380016738.01.T01:CDS
AGGTCTGACCTGTGATTAAC+TGG 0.286915 3:+87239720 None:intergenic
CCACGGCCACGACCTGAATT+AGG 0.294064 3:+87237699 None:intergenic
GGTTCTGGTTATCCTAATTC+AGG 0.295903 3:-87237711 MsG0380016738.01.T01:CDS
GGAAGCTGAGGCGTTGCTTC+TGG 0.314730 3:-87237871 MsG0380016738.01.T01:CDS
TCTTCTGAATCTACTCCTTC+AGG 0.326381 3:-87237732 MsG0380016738.01.T01:CDS
GGCCGTGGAGGAGGACGTTT+TGG 0.327430 3:-87237684 MsG0380016738.01.T01:CDS
CAGAAGAGGGAGGCACAGTT+TGG 0.347103 3:+87237748 None:intergenic
ATTGGAAGGAACCTGAGATT+TGG 0.363404 3:+87237525 None:intergenic
ACCTGTGATTAACTGGGATA+AGG 0.417963 3:+87239727 None:intergenic
GAAACTGTTGATTGAACCTA+TGG 0.464701 3:+87237607 None:intergenic
TCAGGTCGTGGCCGTGGAGG+AGG 0.466264 3:-87237693 MsG0380016738.01.T01:CDS
GCGGGACTGGCTTGAGCTGA+TGG 0.468179 3:+87237502 None:intergenic
CCTAATTCAGGTCGTGGCCG+TGG 0.468199 3:-87237699 MsG0380016738.01.T01:CDS
ATTAAAACAAGAGGCGGGAC+TGG 0.470620 3:+87237489 None:intergenic
CTCACGTCTGCACCTTCTAC+TGG 0.470668 3:-87237786 MsG0380016738.01.T01:CDS
TCTATGAGTTTCCAAATCTC+AGG 0.471542 3:-87237536 MsG0380016738.01.T01:CDS
AGAAGAGGGAGGCACAGTTT+GGG 0.480443 3:+87237749 None:intergenic
ACTGGCTTGAGCTGATGGAT+TGG 0.491525 3:+87237507 None:intergenic
TTGCATCATATTGTTACCAT+AGG 0.495835 3:-87237623 MsG0380016738.01.T01:CDS
CCTGTGATTAACTGGGATAA+GGG 0.497909 3:+87239728 None:intergenic
ACAGACATGTCACCAGTAGA+AGG 0.508224 3:+87237774 None:intergenic
CCCTTATCCCAGTTAATCAC+AGG 0.514463 3:-87239728 MsG0380016738.01.T01:intron
GTTAACCACATCCAATTTCG+TGG 0.514478 3:-87238742 MsG0380016738.01.T01:intron
GGTTATCCTAATTCAGGTCG+TGG 0.526618 3:-87237705 MsG0380016738.01.T01:CDS
CATGGTCAAGTTGGCAGAGA+CGG 0.531686 3:-87237561 MsG0380016738.01.T01:CDS
ATTTACCACGAAATTGGATG+TGG 0.533813 3:+87238737 None:intergenic
CATGAGTGTCATGGTCAAGT+TGG 0.549992 3:-87237570 MsG0380016738.01.T01:CDS
TGACACTCATGAGGTATAGC+AGG 0.557750 3:+87237582 None:intergenic
TCTAGTTCTAGTCCTAGCAC+TGG 0.574472 3:-87237466 None:intergenic
GAAGGAGTAGATTCAGAAGA+GGG 0.577256 3:+87237735 None:intergenic
TGCCAAAACGTCCTCCTCCA+CGG 0.582622 3:+87237682 None:intergenic
TGAAGGAGTAGATTCAGAAG+AGG 0.592292 3:+87237734 None:intergenic
GCTTGAGCTGATGGATTGGA+AGG 0.596979 3:+87237511 None:intergenic
TTCTATATGTAGTTGAACAC+CGG 0.598265 3:-87238774 MsG0380016738.01.T01:CDS
ACTAGAATTAAAACAAGAGG+CGG 0.599953 3:+87237483 None:intergenic
CTAGAATTAAAACAAGAGGC+GGG 0.607647 3:+87237484 None:intergenic
AGAACTAGAATTAAAACAAG+AGG 0.612154 3:+87237480 None:intergenic
TGGTTCAGCTGTGGAAGCTG+AGG 0.616469 3:-87237883 MsG0380016738.01.T01:intron
GAGGACTGTATACCAGTGCT+AGG 0.616513 3:+87237454 None:intergenic
TAACTGGGATAAGGGAGAAG+CGG 0.634020 3:+87239736 None:intergenic
GCTATACCTCATGAGTGTCA+TGG 0.637914 3:-87237579 MsG0380016738.01.T01:CDS
AATTCAGGTCGTGGCCGTGG+AGG 0.645709 3:-87237696 MsG0380016738.01.T01:CDS
TTAGGATAACCAGAACCTGA+AGG 0.655429 3:+87237717 None:intergenic
TGAGATTTGGAAACTCATAG+AGG 0.669573 3:+87237538 None:intergenic
GGAGTAGATTCAGAAGAGGG+AGG 0.674883 3:+87237738 None:intergenic
GGTCTGACCTGTGATTAACT+GGG 0.698814 3:+87239721 None:intergenic
ACTTGACCATGACACTCATG+AGG 0.698829 3:+87237573 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTCATTTATCTTTAAAT+TGG - Chr3:87238588-87238607 MsG0380016738.01.T01:intron 15.0%
!! TATTGAAAGTAAATTTCATA+TGG - Chr3:87239338-87239357 MsG0380016738.01.T01:intron 15.0%
!! ATAGTAATTAGACAGTAAAA+TGG - Chr3:87238775-87238794 MsG0380016738.01.T01:CDS 20.0%
!! TAGACTTAATGATACAATTA+GGG - Chr3:87238186-87238205 MsG0380016738.01.T01:intron 20.0%
!!! TGTGATTAAACACTATTTTA+AGG - Chr3:87238437-87238456 MsG0380016738.01.T01:intron 20.0%
!!! TTACATCTTTTGATCAAATT+AGG + Chr3:87239009-87239028 None:intergenic 20.0%
!!! TTGATTTTTTATACAGAGTT+GGG + Chr3:87237713-87237732 None:intergenic 20.0%
!!! TTTGATTTTTTATACAGAGT+TGG + Chr3:87237714-87237733 None:intergenic 20.0%
! AACTAACTCAGTACATTTAA+AGG + Chr3:87237572-87237591 None:intergenic 25.0%
! AATATGATCTCAAAGTTCAT+AGG + Chr3:87239103-87239122 None:intergenic 25.0%
! AGAACTAGAATTAAAACAAG+AGG + Chr3:87239764-87239783 None:intergenic 25.0%
! ATGTACAGATACAGAATTAT+TGG - Chr3:87237857-87237876 MsG0380016738.01.T01:CDS 25.0%
! ATTGGTAAGACAAAAGAAAA+AGG - Chr3:87238606-87238625 MsG0380016738.01.T01:intron 25.0%
! ATTTGATCAAAAGATGTAAG+TGG - Chr3:87239010-87239029 MsG0380016738.01.T01:intron 25.0%
! CTTTCAATAGCATAAATTAC+CGG + Chr3:87239327-87239346 None:intergenic 25.0%
! GTAGACTTAATGATACAATT+AGG - Chr3:87238185-87238204 MsG0380016738.01.T01:intron 25.0%
! TAACTTAATGTCGATGAAAA+GGG - Chr3:87237752-87237771 MsG0380016738.01.T01:CDS 25.0%
!! GTTCAAGTACATGAATTTTT+AGG + Chr3:87238286-87238305 None:intergenic 25.0%
!!! ACATGAATTTTTAGGACTAA+CGG + Chr3:87238278-87238297 None:intergenic 25.0%
ACTAGAATTAAAACAAGAGG+CGG + Chr3:87239761-87239780 None:intergenic 30.0%
ACTTAATGATACAATTAGGG+TGG - Chr3:87238189-87238208 MsG0380016738.01.T01:intron 30.0%
ACTTTATTACTCGCTTCATT+AGG + Chr3:87237601-87237620 None:intergenic 30.0%
CACGAAAGTTTGTCTAAATT+TGG - Chr3:87238556-87238575 MsG0380016738.01.T01:intron 30.0%
CGTAAACCACTTGAAAAAAT+TGG - Chr3:87238533-87238552 MsG0380016738.01.T01:intron 30.0%
CTTAATGATACAATTAGGGT+GGG - Chr3:87238190-87238209 MsG0380016738.01.T01:intron 30.0%
CTTCAACAAGTTATTGTTGT+TGG - Chr3:87238679-87238698 MsG0380016738.01.T01:intron 30.0%
GAAATAGAGATTGTCTAACA+GGG - Chr3:87238212-87238231 MsG0380016738.01.T01:intron 30.0%
GAGTGTACATAAGACAATAA+AGG + Chr3:87237897-87237916 None:intergenic 30.0%
GTAACTTAATGTCGATGAAA+AGG - Chr3:87237751-87237770 MsG0380016738.01.T01:CDS 30.0%
GTAATTAGACAGTAAAATGG+AGG - Chr3:87238778-87238797 MsG0380016738.01.T01:CDS 30.0%
TCTCTTATGATCCAATTACA+GGG + Chr3:87238083-87238102 None:intergenic 30.0%
TTCTATATGTAGTTGAACAC+CGG - Chr3:87238467-87238486 MsG0380016738.01.T01:intron 30.0%
TTGCATCATATTGTTACCAT+AGG - Chr3:87239618-87239637 MsG0380016738.01.T01:intron 30.0%
! ACTTTCTCAAGAATTTTCTC+CGG - Chr3:87239305-87239324 MsG0380016738.01.T01:intron 30.0%
! CAAAATAATTGCCTTGCTTT+TGG + Chr3:87238884-87238903 None:intergenic 30.0%
! GGACATCTTTTGATCAAATT+AGG + Chr3:87238921-87238940 None:intergenic 30.0%
! TGTGGTTAACTCTAATTTTC+CGG + Chr3:87238489-87238508 None:intergenic 30.0%
!! GTTGCAAGGTACTATTTTAA+GGG + Chr3:87237627-87237646 None:intergenic 30.0%
AATTTCATATGGTTCAGCTG+TGG - Chr3:87239349-87239368 MsG0380016738.01.T01:intron 35.0%
ATACAGAGTTGGGATTTGAT+GGG + Chr3:87237703-87237722 None:intergenic 35.0%
ATACCTTCTCATCTACATTG+AGG - Chr3:87237832-87237851 MsG0380016738.01.T01:CDS 35.0%
ATCAAAAACAACAACGAACG+AGG - Chr3:87238326-87238345 MsG0380016738.01.T01:intron 35.0%
ATTCATGTACTTGAACCAGT+AGG - Chr3:87238290-87238309 MsG0380016738.01.T01:intron 35.0%
ATTCCTGCCAATGATTAATG+AGG + Chr3:87238027-87238046 None:intergenic 35.0%
ATTTACCACGAAATTGGATG+TGG + Chr3:87238507-87238526 None:intergenic 35.0%
CAAATTAGGAACTTCGCAAA+AGG + Chr3:87238907-87238926 None:intergenic 35.0%
CAAATTAGGAACTTCGCAAA+GGG + Chr3:87238907-87238926 None:intergenic 35.0%
CAACACATTGATCTGACTTT+AGG - Chr3:87239282-87239301 MsG0380016738.01.T01:intron 35.0%
CAAGTTAACGATGTTCTTCA+GGG + Chr3:87237676-87237695 None:intergenic 35.0%
CAGTCACGATTATACACAAT+TGG - Chr3:87238838-87238857 MsG0380016738.01.T01:intron 35.0%
CTAGAATTAAAACAAGAGGC+GGG + Chr3:87239760-87239779 None:intergenic 35.0%
CTCGAACAGATATCCATAAT+TGG - Chr3:87238123-87238142 MsG0380016738.01.T01:intron 35.0%
CTCTCTTATGATCCAATTAC+AGG + Chr3:87238084-87238103 None:intergenic 35.0%
CTCTTATGATCCAATTACAG+GGG + Chr3:87238082-87238101 None:intergenic 35.0%
CTGTTCATTTACCACGAAAT+TGG + Chr3:87238513-87238532 None:intergenic 35.0%
GATCAAAAGATGTCCACAAT+TGG - Chr3:87238926-87238945 MsG0380016738.01.T01:intron 35.0%
GGAAATAGAGATTGTCTAAC+AGG - Chr3:87238211-87238230 MsG0380016738.01.T01:intron 35.0%
GTATCCACCTCATTAATCAT+TGG - Chr3:87238017-87238036 MsG0380016738.01.T01:intron 35.0%
GTCTACATCTCATCCAATTA+TGG + Chr3:87238139-87238158 None:intergenic 35.0%
TAATCTTCTTCCCCTGTAAT+TGG - Chr3:87238069-87238088 MsG0380016738.01.T01:intron 35.0%
TACTAGATCAGAATCAGTGT+AGG - Chr3:87238748-87238767 MsG0380016738.01.T01:CDS 35.0%
TATACAGAGTTGGGATTTGA+TGG + Chr3:87237704-87237723 None:intergenic 35.0%
TCAAATTAGGAACTTCGCAA+AGG + Chr3:87238908-87238927 None:intergenic 35.0%
TCAAGTTAACGATGTTCTTC+AGG + Chr3:87237677-87237696 None:intergenic 35.0%
TCTATGAGTTTCCAAATCTC+AGG - Chr3:87239705-87239724 MsG0380016738.01.T01:intron 35.0%
TGAGATTTGGAAACTCATAG+AGG + Chr3:87239706-87239725 None:intergenic 35.0%
TTGATTCTTTATCGTGTGCT+TGG - Chr3:87239066-87239085 MsG0380016738.01.T01:intron 35.0%
TTGTTGAAGAAATCGTGACA+AGG + Chr3:87238668-87238687 None:intergenic 35.0%
! AGATCAATGTGTTGTTGTGA+AGG + Chr3:87239276-87239295 None:intergenic 35.0%
! CAATGTAGATGAGAAGGTAT+AGG + Chr3:87237832-87237851 None:intergenic 35.0%
! GAAACTGTTGATTGAACCTA+TGG + Chr3:87239637-87239656 None:intergenic 35.0%
! TTTCTTTTACTCGAGTCACT+TGG + Chr3:87237479-87237498 None:intergenic 35.0%
! TTTTGGCAATATTCAGTGTC+GGG - Chr3:87239574-87239593 MsG0380016738.01.T01:intron 35.0%
!! ACACTGATTCTGATCTAGTA+AGG + Chr3:87238748-87238767 None:intergenic 35.0%
!! ATTCTAACTAGCTTTCCTAC+TGG + Chr3:87238308-87238327 None:intergenic 35.0%
!! GGTTGCAAGGTACTATTTTA+AGG + Chr3:87237628-87237647 None:intergenic 35.0%
!! GTTGATACACTTGCTTTTGA+AGG - Chr3:87239240-87239259 MsG0380016738.01.T01:intron 35.0%
!! GTTTTGGCAATATTCAGTGT+CGG - Chr3:87239573-87239592 MsG0380016738.01.T01:intron 35.0%
!!! TTCGTGCCAATTTTTTCAAG+TGG + Chr3:87238542-87238561 None:intergenic 35.0%
ACCTGTGATTAACTGGGATA+AGG + Chr3:87237517-87237536 None:intergenic 40.0%
ATTGGAAGGAACCTGAGATT+TGG + Chr3:87239719-87239738 None:intergenic 40.0%
CATTAAGTCTACAGACAAGC+AGG + Chr3:87238177-87238196 None:intergenic 40.0%
CCTGTGATTAACTGGGATAA+GGG + Chr3:87237516-87237535 None:intergenic 40.0%
CTAACGGAACTCTATTACAC+TGG + Chr3:87238262-87238281 None:intergenic 40.0%
GAAGGAGTAGATTCAGAAGA+GGG + Chr3:87239509-87239528 None:intergenic 40.0%
GTTAACCACATCCAATTTCG+TGG - Chr3:87238499-87238518 MsG0380016738.01.T01:intron 40.0%
TACAGAGTTGGGATTTGATG+GGG + Chr3:87237702-87237721 None:intergenic 40.0%
TCCATCATACTCCAAAAGCA+AGG - Chr3:87238958-87238977 MsG0380016738.01.T01:intron 40.0%
TCCATCATAGTCCAAAAGCA+AGG - Chr3:87238870-87238889 MsG0380016738.01.T01:intron 40.0%
TCTTCTGAATCTACTCCTTC+AGG - Chr3:87239509-87239528 MsG0380016738.01.T01:intron 40.0%
TGAAGGAGTAGATTCAGAAG+AGG + Chr3:87239510-87239529 None:intergenic 40.0%
TGATTAACGCATGTTTGTGC+AGG + Chr3:87237945-87237964 None:intergenic 40.0%
TGCACAAACATGCGTTAATC+AGG - Chr3:87237944-87237963 MsG0380016738.01.T01:intron 40.0%
TGGAACTTCTTCACCAATTG+TGG + Chr3:87238942-87238961 None:intergenic 40.0%
TTAGGATAACCAGAACCTGA+AGG + Chr3:87239527-87239546 None:intergenic 40.0%
TTGCCTCAATGTAGATGAGA+AGG + Chr3:87237838-87237857 None:intergenic 40.0%
! AAGGTTGTTACCTCTTTTGC+AGG + Chr3:87237553-87237572 None:intergenic 40.0%
! CTTCACTCAGCTTTTCTTGA+AGG - Chr3:87239177-87239196 MsG0380016738.01.T01:intron 40.0%
! GATGTAAGTGGTTTTTCGCA+TGG - Chr3:87239022-87239041 MsG0380016738.01.T01:intron 40.0%
! GGTTCTGGTTATCCTAATTC+AGG - Chr3:87239530-87239549 MsG0380016738.01.T01:intron 40.0%
!! ACCTCTAAAACCTGCAAAAG+AGG - Chr3:87237540-87237559 MsG0380016738.01.T01:CDS 40.0%
!! ACCTCTTTTGCAGGTTTTAG+AGG + Chr3:87237544-87237563 None:intergenic 40.0%
!!! GTCGGGTCTGTTTTAAGTTT+GGG - Chr3:87239591-87239610 MsG0380016738.01.T01:intron 40.0%
!!! TGTCGGGTCTGTTTTAAGTT+TGG - Chr3:87239590-87239609 MsG0380016738.01.T01:intron 40.0%
ACAGACATGTCACCAGTAGA+AGG + Chr3:87239470-87239489 None:intergenic 45.0%
ACTTGACCATGACACTCATG+AGG + Chr3:87239671-87239690 None:intergenic 45.0%
AGCCATGGAATGGACATCAT+GGG + Chr3:87238238-87238257 None:intergenic 45.0%
AGGTCTGACCTGTGATTAAC+TGG + Chr3:87237524-87237543 None:intergenic 45.0%
ATTAAAACAAGAGGCGGGAC+TGG + Chr3:87239755-87239774 None:intergenic 45.0%
CATGAGTGTCATGGTCAAGT+TGG - Chr3:87239671-87239690 MsG0380016738.01.T01:intron 45.0%
CCACCTCATTAATCATTGGC+AGG - Chr3:87238021-87238040 MsG0380016738.01.T01:intron 45.0%
CCCTTATCCCAGTTAATCAC+AGG - Chr3:87237513-87237532 MsG0380016738.01.T01:CDS 45.0%
CCTGCCAATGATTAATGAGG+TGG + Chr3:87238024-87238043 None:intergenic 45.0%
CTCTATTACACTGGTAGCCA+TGG + Chr3:87238253-87238272 None:intergenic 45.0%
GCTATACCTCATGAGTGTCA+TGG - Chr3:87239662-87239681 MsG0380016738.01.T01:intron 45.0%
GGTCTGACCTGTGATTAACT+GGG + Chr3:87237523-87237542 None:intergenic 45.0%
GGTTATCCTAATTCAGGTCG+TGG - Chr3:87239536-87239555 MsG0380016738.01.T01:intron 45.0%
TAACTGGGATAAGGGAGAAG+CGG + Chr3:87237508-87237527 None:intergenic 45.0%
TAGCCATGGAATGGACATCA+TGG + Chr3:87238239-87238258 None:intergenic 45.0%
TCGTGACTGTGCATTCATGT+TGG + Chr3:87238827-87238846 None:intergenic 45.0%
TGAATATCTGCCACGCATCA+AGG - Chr3:87239212-87239231 MsG0380016738.01.T01:intron 45.0%
TGACACTCATGAGGTATAGC+AGG + Chr3:87239662-87239681 None:intergenic 45.0%
TTACACTGGTAGCCATGGAA+TGG + Chr3:87238248-87238267 None:intergenic 45.0%
! GAATCTACTCCTTCAGGTTC+TGG - Chr3:87239515-87239534 MsG0380016738.01.T01:intron 45.0%
! GATGTGTGCTGCTGTTAAAG+AGG + Chr3:87238719-87238738 None:intergenic 45.0%
!! GCCTTGCTTTTGGACTATGA+TGG + Chr3:87238874-87238893 None:intergenic 45.0%
!!! GCCTTGCTTTTGGAGTATGA+TGG + Chr3:87238962-87238981 None:intergenic 45.0%
ATTGGCAGGAATTCAGCAGC+AGG - Chr3:87238035-87238054 MsG0380016738.01.T01:intron 50.0%
CCACGTTTGCGGTTAACTCA+TGG + Chr3:87237649-87237668 None:intergenic 50.0%
CCAGAAACTCACATGTGCGA+AGG - Chr3:87239134-87239153 MsG0380016738.01.T01:intron 50.0%
CCATGAGTTAACCGCAAACG+TGG - Chr3:87237646-87237665 MsG0380016738.01.T01:CDS 50.0%
CCTTCGCACATGTGAGTTTC+TGG + Chr3:87239137-87239156 None:intergenic 50.0%
GCGGTTAACTCATGGTTGCA+AGG + Chr3:87237641-87237660 None:intergenic 50.0%
GGAGTAGATTCAGAAGAGGG+AGG + Chr3:87239506-87239525 None:intergenic 50.0%
TCAACTAGCACCTTGATGCG+TGG + Chr3:87239225-87239244 None:intergenic 50.0%
TTCAGGGCTTTCCACGTTTG+CGG + Chr3:87237660-87237679 None:intergenic 50.0%
! AGAAGAGGGAGGCACAGTTT+GGG + Chr3:87239495-87239514 None:intergenic 50.0%
! CTACAGACAAGCAGGTACTG+TGG + Chr3:87238169-87238188 None:intergenic 50.0%
! GTGAGTTTCTGGAAGTGTGC+AGG + Chr3:87239126-87239145 None:intergenic 50.0%
! GTGTGCTGCTGTTAAAGAGG+TGG + Chr3:87238716-87238735 None:intergenic 50.0%
!! ACTGGCTTGAGCTGATGGAT+TGG + Chr3:87239737-87239756 None:intergenic 50.0%
!! CATGGTCAAGTTGGCAGAGA+CGG - Chr3:87239680-87239699 MsG0380016738.01.T01:intron 50.0%
!! GCTTGAGCTGATGGATTGGA+AGG + Chr3:87239733-87239752 None:intergenic 50.0%
CTCACGTCTGCACCTTCTAC+TGG - Chr3:87239455-87239474 MsG0380016738.01.T01:intron 55.0%
GCAGGAATTCAGCAGCAGGT+TGG - Chr3:87238039-87238058 MsG0380016738.01.T01:intron 55.0%
GGCCCATGATGTCCATTCCA+TGG - Chr3:87238233-87238252 MsG0380016738.01.T01:intron 55.0%
TGCCAAAACGTCCTCCTCCA+CGG + Chr3:87239562-87239581 None:intergenic 55.0%
TGGTTCAGCTGTGGAAGCTG+AGG - Chr3:87239358-87239377 MsG0380016738.01.T01:intron 55.0%
! CAGAAGAGGGAGGCACAGTT+TGG + Chr3:87239496-87239515 None:intergenic 55.0%
AATTCAGGTCGTGGCCGTGG+AGG - Chr3:87239545-87239564 MsG0380016738.01.T01:intron 60.0%
CCACGGCCACGACCTGAATT+AGG + Chr3:87239545-87239564 None:intergenic 60.0%
CCTAATTCAGGTCGTGGCCG+TGG - Chr3:87239542-87239561 MsG0380016738.01.T01:intron 60.0%
!! GGAAGCTGAGGCGTTGCTTC+TGG - Chr3:87239370-87239389 MsG0380016738.01.T01:intron 60.0%
! GGCCGTGGAGGAGGACGTTT+TGG - Chr3:87239557-87239576 MsG0380016738.01.T01:intron 65.0%
!! GCGGGACTGGCTTGAGCTGA+TGG + Chr3:87239742-87239761 None:intergenic 65.0%
TCAGGTCGTGGCCGTGGAGG+AGG - Chr3:87239548-87239567 MsG0380016738.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87237467 87239796 87237467 ID=MsG0380016738.01;Name=MsG0380016738.01
Chr3 mRNA 87237467 87239796 87237467 ID=MsG0380016738.01.T01;Parent=MsG0380016738.01;Name=MsG0380016738.01.T01;_AED=0.50;_eAED=1.00;_QI=0|0|0|1|0|0|3|0|187
Chr3 exon 87239729 87239796 87239729 ID=MsG0380016738.01.T01:exon:22125;Parent=MsG0380016738.01.T01
Chr3 exon 87238743 87238804 87238743 ID=MsG0380016738.01.T01:exon:22124;Parent=MsG0380016738.01.T01
Chr3 exon 87237467 87237897 87237467 ID=MsG0380016738.01.T01:exon:22123;Parent=MsG0380016738.01.T01
Chr3 CDS 87239729 87239796 87239729 ID=MsG0380016738.01.T01:cds;Parent=MsG0380016738.01.T01
Chr3 CDS 87238743 87238804 87238743 ID=MsG0380016738.01.T01:cds;Parent=MsG0380016738.01.T01
Chr3 CDS 87237467 87237897 87237467 ID=MsG0380016738.01.T01:cds;Parent=MsG0380016738.01.T01
Gene Sequence

>MsG0380016738.01.T01

ATGAACTCACCAAGTGACTCGAGTAAAAGAAAAAGTAACCGCTTCTCCCTTATCCCAGTTAATCACAGGTGTTCAATTCTATATGTAGTTGAACACCGGAAAATTAGAGTTAACCACATCCAATTTCGTGCTGTGGAAGCTGAGGCGTTGCTTCTGGCTCATGAGATGCGTCTTCAAAAGTTAAAGAAAGCTGCAAGCACTGATTCAGTGTCGATTAATCTCACGTCTGCACCTTCTACTGGTGACATGTCTGTATCCCAAACTGTGCCTCCCTCTTCTGAATCTACTCCTTCAGGTTCTGGTTATCCTAATTCAGGTCGTGGCCGTGGAGGAGGACGTTTTGGCAATATTCAGTGTCGGGTCTGTTTTAAGTTTGGGCACATTGCATCATATTGTTACCATAGGTTCAATCAACAGTTTCAACCTGCTATACCTCATGAGTGTCATGGTCAAGTTGGCAGAGACGGCCTCTATGAGTTTCCAAATCTCAGGTTCCTTCCAATCCATCAGCTCAAGCCAGTCCCGCCTCTTGTTTTAATTCTAGTTCTAGTCCTAGCACTG
Protein sequence

>MsG0380016738.01.T01

MNSPSDSSKRKSNRFSLIPVNHRCSILYVVEHRKIRVNHIQFRAVEAEALLLAHEMRLQKLKKAASTDSVSINLTSAPSTGDMSVSQTVPPSSESTPSGSGYPNSGRGRGGGRFGNIQCRVCFKFGHIASYCYHRFNQQFQPAIPHECHGQVGRDGLYEFPNLRFLPIHQLKPVPPLVLILVLVLAL