AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016914.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016914.01.T01 MTR_3g098140 75.188 133 12 3 1 113 1 132 7.53e-59 182
MsG0380016914.01.T01 MTR_3g098160 61.654 133 28 2 1 110 1 133 2.47e-47 153
MsG0380016914.01.T01 MTR_3g098130 62.393 117 29 1 9 110 20 136 7.48e-45 147
MsG0380016914.01.T01 MTR_3g098130 62.609 115 28 1 9 108 58 172 1.51e-44 147
MsG0380016914.01.T01 MTR_3g098180 61.538 117 30 1 9 110 15 131 9.74e-44 144
MsG0380016914.01.T01 MTR_3g098170 60.000 120 31 2 9 113 19 136 3.64e-40 134
MsG0380016914.01.T01 MTR_3g098160 44.000 175 38 4 1 167 1 123 1.78e-36 124
MsG0380016914.01.T01 MTR_3g098120 47.826 138 39 4 1 113 43 172 9.81e-32 114
MsG0380016914.01.T01 MTR_3g098170 59.000 100 24 2 9 93 19 116 1.69e-30 109
MsG0380016914.01.T01 MTR_3g098100 48.696 115 43 2 9 107 11 125 4.99e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016914.01.T01 AT1G04290 47.863 117 45 2 9 110 13 128 1.10e-27 102
MsG0380016914.01.T01 AT1G04290 43.299 97 39 2 9 90 13 108 1.08e-17 75.9

Find 44 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAATCTCTTAACTATT+TGG 0.170103 3:-89367691 MsG0380016914.01.T01:CDS
TTGATTAATTTGCAGAATTC+AGG 0.234329 3:-89367956 MsG0380016914.01.T01:intron
GCTGGAAATCCGTGGAATTC+TGG 0.267271 3:-89370370 MsG0380016914.01.T01:CDS
TTAAGAGATTGAAATATCTA+TGG 0.357329 3:+89367699 None:intergenic
ACTACTTTGGTGGATGTGAT+AGG 0.419520 3:-89367908 MsG0380016914.01.T01:CDS
CGCTGGATTTCCGTGGGAGT+CGG 0.419546 3:-89367867 MsG0380016914.01.T01:CDS
GCAGCCGCAATTCCAGCTGC+TGG 0.425993 3:-89370388 MsG0380016914.01.T01:CDS
GCAGCCGCAATTCCCGCCGC+TGG 0.458488 3:-89367884 MsG0380016914.01.T01:CDS
GCTGGATTTCCGTGGGAGTC+GGG 0.459981 3:-89367866 MsG0380016914.01.T01:CDS
TTCCACGGATTTCCAGCAGC+TGG 0.466138 3:+89370376 None:intergenic
GCATGAGATATTAATCTCAA+TGG 0.477165 3:+89370342 None:intergenic
AACCTTGCGTGGCCTACGAT+TGG 0.486916 3:-89370597 MsG0380016914.01.T01:CDS
ACAGAAGCATCAACGGAGAA+AGG 0.494655 3:-89370677 MsG0380016914.01.T01:CDS
AGAGATCAATGCCTCATGCT+TGG 0.500461 3:-89367834 MsG0380016914.01.T01:CDS
TTCCCGCCGCTGGATTTCCG+TGG 0.508980 3:-89367874 MsG0380016914.01.T01:CDS
AGCAGCATCGTCAATGGTAG+AGG 0.509056 3:-89370651 MsG0380016914.01.T01:CDS
AGGAGAAGCAGCATCGTCAA+TGG 0.514265 3:-89370657 MsG0380016914.01.T01:CDS
TCAGTTGACACATATTATGT+TGG 0.523087 3:+89367732 None:intergenic
TCCCGCCGCTGGATTTCCGT+GGG 0.531634 3:-89367873 MsG0380016914.01.T01:CDS
TGGTGCTATCACTACTTTGG+TGG 0.532173 3:-89367918 MsG0380016914.01.T01:CDS
TCCCACGGAAATCCAGCGGC+GGG 0.541204 3:+89367872 None:intergenic
CGATTGGATCTCATTGAACC+TGG 0.547930 3:-89370581 MsG0380016914.01.T01:CDS
GGTAGAGGATGAATTGCCTC+AGG 0.568322 3:-89370636 MsG0380016914.01.T01:CDS
TTGGAACATCTAACCTTGCG+TGG 0.572253 3:-89370608 MsG0380016914.01.T01:CDS
CGGTGGTGCTATCACTACTT+TGG 0.572426 3:-89367921 MsG0380016914.01.T01:CDS
AAATCCAGCGGCGGGAATTG+CGG 0.573545 3:+89367880 None:intergenic
GCATGAGGCATTGATCTCTA+CGG 0.574279 3:+89367838 None:intergenic
CGGTGGTGCTATCACTACTC+TGG 0.582009 3:-89370425 MsG0380016914.01.T01:CDS
ATTTCCAGCAGCTGGAATTG+CGG 0.590343 3:+89370384 None:intergenic
ATCCAATCGTAGGCCACGCA+AGG 0.595930 3:+89370595 None:intergenic
TGGTGCTATCACTACTCTGG+TGG 0.598552 3:-89370422 MsG0380016914.01.T01:CDS
ATAAATACGAACATTGACAT+AGG 0.602776 3:+89367805 None:intergenic
ACGGAAACTCCCGACTCCCA+CGG 0.604979 3:+89367857 None:intergenic
CTCCCACGGAAATCCAGCGG+CGG 0.613353 3:+89367871 None:intergenic
TTCCAGCTGCTGGAAATCCG+TGG 0.616973 3:-89370378 MsG0380016914.01.T01:CDS
AATTCAGGTAAGTACTTGCA+CGG 0.620247 3:-89367941 MsG0380016914.01.T01:CDS
AATTCAGGTAAGTACTTGCA+CGG 0.620247 3:-89370445 MsG0380016914.01.T01:intron
ATGGAAACTCCAGAATTCCA+CGG 0.629636 3:+89370361 None:intergenic
ACTACTCTGGTGGATATCGT+AGG 0.637840 3:-89370412 MsG0380016914.01.T01:CDS
GTTCAATGAGATCCAATCGT+AGG 0.645816 3:+89370585 None:intergenic
ATAGGCAGCATCCAAGCATG+AGG 0.668993 3:+89367823 None:intergenic
CGACTCCCACGGAAATCCAG+CGG 0.672848 3:+89367868 None:intergenic
TCAGGTAAGTACTTGCACGG+TGG 0.784220 3:-89367938 MsG0380016914.01.T01:CDS
TCAGGTAAGTACTTGCACGG+TGG 0.784220 3:-89370442 MsG0380016914.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAACATTTAATTTTTTAT+TGG + Chr3:89368869-89368888 None:intergenic 10.0%
!! AAAATGAGTTTAACATAAAA+TGG + Chr3:89368818-89368837 None:intergenic 15.0%
!! AAATGAGTTTAACATAAAAT+GGG + Chr3:89368817-89368836 None:intergenic 15.0%
!! ACTAAAAAAAACAATATATC+AGG + Chr3:89370378-89370397 None:intergenic 15.0%
!! ATCTTAAACATAATAAAACA+AGG - Chr3:89369164-89369183 MsG0380016914.01.T01:intron 15.0%
!! CTAAAAAAAACAATATATCA+GGG + Chr3:89370377-89370396 None:intergenic 15.0%
!! GAGAATTAATTAGTTAATAT+TGG + Chr3:89367898-89367917 None:intergenic 15.0%
!! GCAAATTAATCAATTAATTT+AGG + Chr3:89370402-89370421 None:intergenic 15.0%
!! TTGTATAAATTATGTTACAA+TGG + Chr3:89368716-89368735 None:intergenic 15.0%
!!! CTAAACATAAATTCTTATTT+TGG - Chr3:89370167-89370186 MsG0380016914.01.T01:intron 15.0%
!!! TGTTTTATTATGTTTAAGAT+TGG + Chr3:89369164-89369183 None:intergenic 15.0%
!! ATTTCAATCTCTTAACTATT+TGG - Chr3:89370674-89370693 MsG0380016914.01.T01:CDS 20.0%
!! CAAACAAAATGAATGTTAAA+TGG + Chr3:89368298-89368317 None:intergenic 20.0%
!! TCAAAAGAATAGTTTATCTA+GGG + Chr3:89369634-89369653 None:intergenic 20.0%
!! TTAAGAGATTGAAATATCTA+TGG + Chr3:89370669-89370688 None:intergenic 20.0%
!! TTATAGATGAGGATAATATA+TGG + Chr3:89370115-89370134 None:intergenic 20.0%
!! TTCAAAAGAATAGTTTATCT+AGG + Chr3:89369635-89369654 None:intergenic 20.0%
!!! AACATAAATTCTTATTTTGG+AGG - Chr3:89370170-89370189 MsG0380016914.01.T01:intron 20.0%
!!! AACTATTCTTTTGAAAATGA+TGG - Chr3:89369640-89369659 MsG0380016914.01.T01:intron 20.0%
!!! GGAATATTTTATTTGAATCA+TGG + Chr3:89368277-89368296 None:intergenic 20.0%
!!! TCAATCTTGTATTTTCTTAT+TGG - Chr3:89368331-89368350 MsG0380016914.01.T01:intron 20.0%
!!! TCTATCTTATGTTGTTTTAA+AGG - Chr3:89370582-89370601 MsG0380016914.01.T01:CDS 20.0%
!!! TGAAGTGAATATTTGTTTTA+GGG - Chr3:89369982-89370001 MsG0380016914.01.T01:intron 20.0%
!!! TTTCACATTTTACTTACAAA+GGG + Chr3:89368193-89368212 None:intergenic 20.0%
! AACGTCTTATAAAGTAAACA+TGG - Chr3:89368580-89368599 MsG0380016914.01.T01:intron 25.0%
! AATATCCAACATATCATGAT+TGG - Chr3:89370025-89370044 MsG0380016914.01.T01:intron 25.0%
! ACTTACAAAGGGAATATATT+TGG + Chr3:89368182-89368201 None:intergenic 25.0%
! AGATCTAAGAAAAATTCTTG+AGG + Chr3:89370231-89370250 None:intergenic 25.0%
! ATAAATACGAACATTGACAT+AGG + Chr3:89370563-89370582 None:intergenic 25.0%
! CTAATTAATTCTCAGAATTC+AGG - Chr3:89367905-89367924 MsG0380016914.01.T01:CDS 25.0%
! TAAAAAGTAGGCACTTTAAT+AGG - Chr3:89369792-89369811 MsG0380016914.01.T01:intron 25.0%
! TATGTTGGATATTTGTATGT+TGG + Chr3:89370018-89370037 None:intergenic 25.0%
! TCTGTAATTTGAGAATTACA+AGG + Chr3:89369421-89369440 None:intergenic 25.0%
! TGATCTAAGAACATTGTTTA+AGG + Chr3:89368492-89368511 None:intergenic 25.0%
! TTTATTGGATAAAACTCATG+TGG + Chr3:89368854-89368873 None:intergenic 25.0%
!! GTAGAGTGTTAGAAAAATAT+TGG + Chr3:89368752-89368771 None:intergenic 25.0%
!! GTTTCACATTTTACTTACAA+AGG + Chr3:89368194-89368213 None:intergenic 25.0%
!! TACTAACACATGTTTTCATT+GGG - Chr3:89368358-89368377 MsG0380016914.01.T01:intron 25.0%
!!! ATCCTTTCTTTTGTTTAAAG+AGG + Chr3:89368932-89368951 None:intergenic 25.0%
!!! CTGAAGTGAATATTTGTTTT+AGG - Chr3:89369981-89370000 MsG0380016914.01.T01:intron 25.0%
!!! TATTAAAGTGCCTACTTTTT+AGG + Chr3:89369793-89369812 None:intergenic 25.0%
!!! TCCTTTCTTTTGTTTAAAGA+GGG + Chr3:89368931-89368950 None:intergenic 25.0%
!!! TTGATTAATTTGCAGAATTC+AGG - Chr3:89370409-89370428 MsG0380016914.01.T01:CDS 25.0%
AATAGCCAATCATGATATGT+TGG + Chr3:89370033-89370052 None:intergenic 30.0%
ACAAATATTCACTTCAGATG+TGG + Chr3:89369978-89369997 None:intergenic 30.0%
ACCACGAATATCCTTAAAAT+CGG - Chr3:89368663-89368682 MsG0380016914.01.T01:intron 30.0%
ATATATCAGGGAAAGAGAAA+AGG + Chr3:89370365-89370384 None:intergenic 30.0%
CCAATAAGAGAATGAATGTT+GGG + Chr3:89368774-89368793 None:intergenic 30.0%
CTTTAAATACTGAAGCAAAG+CGG - Chr3:89369694-89369713 MsG0380016914.01.T01:intron 30.0%
GCAATGAGAAGAAAGTAAAT+TGG - Chr3:89368974-89368993 MsG0380016914.01.T01:intron 30.0%
GCATGAGATATTAATCTCAA+TGG + Chr3:89368026-89368045 None:intergenic 30.0%
GCATTACAAAATGTGGTATA+AGG + Chr3:89368956-89368975 None:intergenic 30.0%
GTTAATTGTGTTCTCAATGA+AGG - Chr3:89368996-89369015 MsG0380016914.01.T01:intron 30.0%
TAAGGAAACTCCTAAAAAGT+AGG - Chr3:89369780-89369799 MsG0380016914.01.T01:intron 30.0%
TCAGTTGACACATATTATGT+TGG + Chr3:89370636-89370655 None:intergenic 30.0%
TCCAATAAGAGAATGAATGT+TGG + Chr3:89368775-89368794 None:intergenic 30.0%
TCTCATTGCATTACAAAATG+TGG + Chr3:89368963-89368982 None:intergenic 30.0%
TTTAAATACTGAAGCAAAGC+GGG - Chr3:89369695-89369714 MsG0380016914.01.T01:intron 30.0%
TTTCAATCGAGTTATAGATG+AGG + Chr3:89370126-89370145 None:intergenic 30.0%
! ACATATCATGATTGGCTATT+TGG - Chr3:89370033-89370052 MsG0380016914.01.T01:intron 30.0%
! GTACTAACACATGTTTTCAT+TGG - Chr3:89368357-89368376 MsG0380016914.01.T01:intron 30.0%
! TAGAGTTTTACGAATAGGAA+AGG - Chr3:89368087-89368106 MsG0380016914.01.T01:intron 30.0%
!! CCTTTCTTTTGTTTAAAGAG+GGG + Chr3:89368930-89368949 None:intergenic 30.0%
!! TTTTTAGGAGTTTCCTTATC+CGG + Chr3:89369778-89369797 None:intergenic 30.0%
AAATGTGAAACTGAGACCAA+AGG - Chr3:89368203-89368222 MsG0380016914.01.T01:intron 35.0%
AACTCCTTGCTTAAAAGCTT+CGG - Chr3:89369522-89369541 MsG0380016914.01.T01:intron 35.0%
AATTCAGGTAAGTACTTGCA+CGG - Chr3:89367920-89367939 MsG0380016914.01.T01:CDS 35.0%
AGAACGTATGTGATTTCCTA+AGG + Chr3:89369864-89369883 None:intergenic 35.0%
ATACATCTTCTACTGTCCTT+TGG + Chr3:89368222-89368241 None:intergenic 35.0%
ATGATACAAACGAGTAAACG+TGG + Chr3:89367838-89367857 None:intergenic 35.0%
ATGGCTTGAATGATTTCTTC+AGG - Chr3:89369659-89369678 MsG0380016914.01.T01:intron 35.0%
CCACGAATATCCTTAAAATC+GGG - Chr3:89368664-89368683 MsG0380016914.01.T01:intron 35.0%
CCCAACATTCATTCTCTTAT+TGG - Chr3:89368771-89368790 MsG0380016914.01.T01:intron 35.0%
CCCCTCTTTAAACAAAAGAA+AGG - Chr3:89368927-89368946 MsG0380016914.01.T01:intron 35.0%
CGCTTTGCTTCAGTATTTAA+AGG + Chr3:89369696-89369715 None:intergenic 35.0%
GAAGATGTATGAACTTTCTG+AGG - Chr3:89368232-89368251 MsG0380016914.01.T01:intron 35.0%
GAGAAATTGTTAACCCAGTT+CGG - Chr3:89369213-89369232 MsG0380016914.01.T01:intron 35.0%
GAGCAGACAAGAAATAAAAG+AGG - Chr3:89369186-89369205 MsG0380016914.01.T01:intron 35.0%
TATGTGATTTCCTAAGGAAG+TGG + Chr3:89369858-89369877 None:intergenic 35.0%
TTCTTAGATCTAATCTTGCG+TGG - Chr3:89370240-89370259 MsG0380016914.01.T01:intron 35.0%
! AAGCTTTTAAGCAAGGAGTT+AGG + Chr3:89369522-89369541 None:intergenic 35.0%
! GACTTAGGAAAGTCTTTTGA+AGG + Chr3:89369831-89369850 None:intergenic 35.0%
! GATGCTAGAGTTTTACGAAT+AGG - Chr3:89368082-89368101 MsG0380016914.01.T01:intron 35.0%
! TAAGCCTTTCGTGTATCTTT+TGG + Chr3:89369593-89369612 None:intergenic 35.0%
! TATCTTTTGGATGCATGCTT+AGG + Chr3:89369580-89369599 None:intergenic 35.0%
! TCCTAGGTTGAAATCTTGTT+GGG + Chr3:89369350-89369369 None:intergenic 35.0%
! TTCCTAGGTTGAAATCTTGT+TGG + Chr3:89369351-89369370 None:intergenic 35.0%
! TTGCTGAGAGCTTTTGAATA+CGG + Chr3:89369296-89369315 None:intergenic 35.0%
!! AACATCTGCTTTTCTGTGTT+TGG + Chr3:89369113-89369132 None:intergenic 35.0%
!! TGCAAGTTGTTGTGTTTTGA+AGG + Chr3:89369463-89369482 None:intergenic 35.0%
!! TGCACCAAAGCTTTTAAGTA+CGG + Chr3:89369487-89369506 None:intergenic 35.0%
AAGGTTTGTGATCAGTTGTC+AGG + Chr3:89369402-89369421 None:intergenic 40.0%
ACTCCTTGCTTAAAAGCTTC+GGG - Chr3:89369523-89369542 MsG0380016914.01.T01:intron 40.0%
AGATGTTCCAAAAACTCCTG+AGG + Chr3:89367748-89367767 None:intergenic 40.0%
AGGGTATGTTCATTGAGAAG+AGG + Chr3:89370299-89370318 None:intergenic 40.0%
AGGTTTGTGATCAGTTGTCA+GGG + Chr3:89369401-89369420 None:intergenic 40.0%
ATACAAACGAGTAAACGTGG+AGG + Chr3:89367835-89367854 None:intergenic 40.0%
ATACGAACGAGTAAACGTGA+GGG + Chr3:89370318-89370337 None:intergenic 40.0%
ATGGAAACTCCAGAATTCCA+CGG + Chr3:89368007-89368026 None:intergenic 40.0%
GAGTTCAGGAAGAAAAAGAC+TGG - Chr3:89368130-89368149 MsG0380016914.01.T01:intron 40.0%
GATCCATTACTCAGTCAACA+TGG - Chr3:89369752-89369771 MsG0380016914.01.T01:intron 40.0%
GCAACCGTACTTAAAAGCTT+TGG - Chr3:89369480-89369499 MsG0380016914.01.T01:intron 40.0%
GCATCCAAAAGATACACGAA+AGG - Chr3:89369586-89369605 MsG0380016914.01.T01:intron 40.0%
GTTCAATGAGATCCAATCGT+AGG + Chr3:89367783-89367802 None:intergenic 40.0%
TAAGTCGTTACCACTTCCTT+AGG - Chr3:89369845-89369864 MsG0380016914.01.T01:intron 40.0%
TACGTTCTGATCTTCTCACA+CGG - Chr3:89369876-89369895 MsG0380016914.01.T01:intron 40.0%
TATCAGGGAAAGAGAAAAGG+AGG + Chr3:89370362-89370381 None:intergenic 40.0%
! ACTACTTTGGTGGATGTGAT+AGG - Chr3:89370457-89370476 MsG0380016914.01.T01:intron 40.0%
! ACTGGACAAGTTTTTGCTCA+AGG - Chr3:89368148-89368167 MsG0380016914.01.T01:intron 40.0%
! CCTAGGTTGAAATCTTGTTG+GGG + Chr3:89369349-89369368 None:intergenic 40.0%
! CCTTAAAATCGGGTTGCTTT+GGG - Chr3:89368674-89368693 MsG0380016914.01.T01:intron 40.0%
! CTGGACAAGTTTTTGCTCAA+GGG - Chr3:89368149-89368168 MsG0380016914.01.T01:intron 40.0%
! GAAGGACAACTTTTCATGCA+AGG - Chr3:89369014-89369033 MsG0380016914.01.T01:intron 40.0%
! TAAGGAAGTGGTAACGACTT+AGG + Chr3:89369846-89369865 None:intergenic 40.0%
! TCCTTAAAATCGGGTTGCTT+TGG - Chr3:89368673-89368692 MsG0380016914.01.T01:intron 40.0%
! TGAATTGCCTCAGGAGTTTT+TGG - Chr3:89367738-89367757 MsG0380016914.01.T01:CDS 40.0%
!! CCCGATTTTAAGGATATTCG+TGG + Chr3:89368667-89368686 None:intergenic 40.0%
!! GGGAAAAACAGAAGCATCAA+CGG - Chr3:89367681-89367700 MsG0380016914.01.T01:CDS 40.0%
!! TTGACTGAGTAATGGATCAC+CGG + Chr3:89369750-89369769 None:intergenic 40.0%
!! TTGTTTAAAGAGGGGTGTCA+TGG + Chr3:89368922-89368941 None:intergenic 40.0%
ACACGAGCTTCAGATCAAAC+CGG - Chr3:89369728-89369747 MsG0380016914.01.T01:intron 45.0%
AGAGATCAATGCCTCATGCT+TGG - Chr3:89370531-89370550 MsG0380016914.01.T01:intron 45.0%
AGGAGGAAGATGAAGAGAGT+AGG + Chr3:89370345-89370364 None:intergenic 45.0%
ATTTCCAGCAGCTGGAATTG+CGG + Chr3:89367984-89368003 None:intergenic 45.0%
CAAAAGCTCTCAGCAAACCA+CGG - Chr3:89369300-89369319 MsG0380016914.01.T01:intron 45.0%
CATTACTCAGTCAACATGGC+CGG - Chr3:89369756-89369775 MsG0380016914.01.T01:intron 45.0%
CCCCAACAAGATTTCAACCT+AGG - Chr3:89369346-89369365 MsG0380016914.01.T01:intron 45.0%
CGATTGGATCTCATTGAACC+TGG - Chr3:89367784-89367803 MsG0380016914.01.T01:CDS 45.0%
CTCCTTGCTTAAAAGCTTCG+GGG - Chr3:89369524-89369543 MsG0380016914.01.T01:intron 45.0%
GATACGAACGAGTAAACGTG+AGG + Chr3:89370319-89370338 None:intergenic 45.0%
GCACGTGTTCGCTTGATTTA+AGG + Chr3:89369930-89369949 None:intergenic 45.0%
GCTGAATGAGATCCAATCGT+AGG + Chr3:89370266-89370285 None:intergenic 45.0%
GGAAGATGAAGAGAGTAGGT+AGG + Chr3:89370341-89370360 None:intergenic 45.0%
GGTTGAAATCTTGTTGGGGT+AGG + Chr3:89369345-89369364 None:intergenic 45.0%
TCTCAGATCTAGGAGTTCCT+AGG + Chr3:89369366-89369385 None:intergenic 45.0%
TGAGATGGGATCTCAGATCT+AGG + Chr3:89369376-89369395 None:intergenic 45.0%
TTGGAACATCTAACCTTGCG+TGG - Chr3:89367757-89367776 MsG0380016914.01.T01:CDS 45.0%
! ACTACTCTGGTGGATATCGT+AGG - Chr3:89367953-89367972 MsG0380016914.01.T01:intron 45.0%
! AGTGGATTTCCTTCCTGACT+TGG + Chr3:89369265-89369284 None:intergenic 45.0%
! CCCAAAGCAACCCGATTTTA+AGG + Chr3:89368677-89368696 None:intergenic 45.0%
! TACCCCGAAGCTTTTAAGCA+AGG + Chr3:89369529-89369548 None:intergenic 45.0%
! TTGAATACGGACTGCACTAG+TGG + Chr3:89369283-89369302 None:intergenic 45.0%
!! ACAGAAGCATCAACGGAGAA+AGG - Chr3:89367688-89367707 MsG0380016914.01.T01:CDS 45.0%
!! CGGTTTTGACCAACATAAGC+TGG - Chr3:89369896-89369915 MsG0380016914.01.T01:intron 45.0%
!! GCATGAGGCATTGATCTCTA+CGG + Chr3:89370530-89370549 None:intergenic 45.0%
!! TGGTGCTATCACTACTTTGG+TGG - Chr3:89370447-89370466 MsG0380016914.01.T01:intron 45.0%
!!! AAAACAAAAATTTATTTTTA+TGG - Chr3:89368463-89368482 MsG0380016914.01.T01:intron 5.0%
AATCTTGCGTGGCCTACGAT+TGG - Chr3:89370251-89370270 MsG0380016914.01.T01:intron 50.0%
AGCAGCATCGTCAATGGTAG+AGG - Chr3:89367714-89367733 MsG0380016914.01.T01:CDS 50.0%
AGGAGAAGCAGCATCGTCAA+TGG - Chr3:89367708-89367727 MsG0380016914.01.T01:CDS 50.0%
ATAGGCAGCATCCAAGCATG+AGG + Chr3:89370545-89370564 None:intergenic 50.0%
ATTGAGAAGACGACACGACC+AGG + Chr3:89367805-89367824 None:intergenic 50.0%
ATTGAGAAGAGGACACGACC+AGG + Chr3:89370288-89370307 None:intergenic 50.0%
CACGTGCGTAAACATAGGCA+AGG - Chr3:89369943-89369962 MsG0380016914.01.T01:intron 50.0%
CAGTTGTCAGGGAGTGAGAT+GGG + Chr3:89369390-89369409 None:intergenic 50.0%
CGATTGGATCTCATTCAGCC+TGG - Chr3:89370267-89370286 MsG0380016914.01.T01:CDS 50.0%
CTAGATCATCAGTGCAACCG+TGG + Chr3:89369320-89369339 None:intergenic 50.0%
CTGTTGTAAGCGTGGAGTTC+AGG - Chr3:89368116-89368135 MsG0380016914.01.T01:intron 50.0%
GAATCCACGCCAGCTTATGT+TGG + Chr3:89369908-89369927 None:intergenic 50.0%
GCGAACACGTGCGTAAACAT+AGG - Chr3:89369938-89369957 MsG0380016914.01.T01:intron 50.0%
GCTGGAAATCCGTGGAATTC+TGG - Chr3:89367995-89368014 MsG0380016914.01.T01:intron 50.0%
GGTAGAGGATGAATTGCCTC+AGG - Chr3:89367729-89367748 MsG0380016914.01.T01:CDS 50.0%
TCAGGTAAGTACTTGCACGG+TGG - Chr3:89367923-89367942 MsG0380016914.01.T01:CDS 50.0%
TCAGTCAACATGGCCGGATA+AGG - Chr3:89369762-89369781 MsG0380016914.01.T01:intron 50.0%
TCAGTTGTCAGGGAGTGAGA+TGG + Chr3:89369391-89369410 None:intergenic 50.0%
TTGACCAACATAAGCTGGCG+TGG - Chr3:89369901-89369920 MsG0380016914.01.T01:intron 50.0%
! AATCGGGTTGCTTTGGGTGA+TGG - Chr3:89368680-89368699 MsG0380016914.01.T01:intron 50.0%
! ATCGGGTTGCTTTGGGTGAT+GGG - Chr3:89368681-89368700 MsG0380016914.01.T01:intron 50.0%
! CACGGTTGCACTGATGATCT+AGG - Chr3:89369318-89369337 MsG0380016914.01.T01:intron 50.0%
! CGGCCATGTTGACTGAGTAA+TGG + Chr3:89369758-89369777 None:intergenic 50.0%
!! CGGTGGTGCTATCACTACTT+TGG - Chr3:89370444-89370463 MsG0380016914.01.T01:intron 50.0%
!! TGGTGCTATCACTACTCTGG+TGG - Chr3:89367943-89367962 MsG0380016914.01.T01:CDS 50.0%
AAATCCAGCGGCGGGAATTG+CGG + Chr3:89370488-89370507 None:intergenic 55.0%
AACCTTGCGTGGCCTACGAT+TGG - Chr3:89367768-89367787 MsG0380016914.01.T01:CDS 55.0%
AGGTGACGTTGCACCGAACT+GGG + Chr3:89369229-89369248 None:intergenic 55.0%
ATCCAATCGTAGGCCACGCA+AGG + Chr3:89367773-89367792 None:intergenic 55.0%
GGCTGTAGCTGTTGTAAGCG+TGG - Chr3:89368108-89368127 MsG0380016914.01.T01:intron 55.0%
GGTGCAACGTCACCTACTCT+GGG - Chr3:89369234-89369253 MsG0380016914.01.T01:intron 55.0%
GTGCAACGTCACCTACTCTG+GGG - Chr3:89369235-89369254 MsG0380016914.01.T01:intron 55.0%
TAGGTGACGTTGCACCGAAC+TGG + Chr3:89369230-89369249 None:intergenic 55.0%
TGCAACGTCACCTACTCTGG+GGG - Chr3:89369236-89369255 MsG0380016914.01.T01:intron 55.0%
TTCCACGGATTTCCAGCAGC+TGG + Chr3:89367992-89368011 None:intergenic 55.0%
TTCCAGCTGCTGGAAATCCG+TGG - Chr3:89367987-89368006 MsG0380016914.01.T01:intron 55.0%
!! CGGTGGTGCTATCACTACTC+TGG - Chr3:89367940-89367959 MsG0380016914.01.T01:CDS 55.0%
ACGGAAACTCCCGACTCCCA+CGG + Chr3:89370511-89370530 None:intergenic 60.0%
CGACTCCCACGGAAATCCAG+CGG + Chr3:89370500-89370519 None:intergenic 60.0%
CGCTGGATTTCCGTGGGAGT+CGG - Chr3:89370498-89370517 MsG0380016914.01.T01:intron 60.0%
CGGTGCAACGTCACCTACTC+TGG - Chr3:89369233-89369252 MsG0380016914.01.T01:intron 60.0%
GCTGGATTTCCGTGGGAGTC+GGG - Chr3:89370499-89370518 MsG0380016914.01.T01:intron 60.0%
TGGGGGCTACCAAGTCAGGA+AGG - Chr3:89369253-89369272 MsG0380016914.01.T01:intron 60.0%
! ACTCTGGGGGCTACCAAGTC+AGG - Chr3:89369249-89369268 MsG0380016914.01.T01:intron 60.0%
! GACTTGGTAGCCCCCAGAGT+AGG + Chr3:89369249-89369268 None:intergenic 60.0%
CTCCCACGGAAATCCAGCGG+CGG + Chr3:89370497-89370516 None:intergenic 65.0%
GCAGCCGCAATTCCAGCTGC+TGG - Chr3:89367977-89367996 MsG0380016914.01.T01:intron 65.0%
TCCCACGGAAATCCAGCGGC+GGG + Chr3:89370496-89370515 None:intergenic 65.0%
TCCCGCCGCTGGATTTCCGT+GGG - Chr3:89370492-89370511 MsG0380016914.01.T01:intron 65.0%
TTCCCGCCGCTGGATTTCCG+TGG - Chr3:89370491-89370510 MsG0380016914.01.T01:intron 65.0%
GCAGCCGCAATTCCCGCCGC+TGG - Chr3:89370481-89370500 MsG0380016914.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 89367679 89370708 89367679 ID=MsG0380016914.01;Name=MsG0380016914.01
Chr3 mRNA 89367679 89370708 89367679 ID=MsG0380016914.01.T01;Parent=MsG0380016914.01;Name=MsG0380016914.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|202
Chr3 exon 89370579 89370708 89370579 ID=MsG0380016914.01.T01:exon:12277;Parent=MsG0380016914.01.T01
Chr3 exon 89370267 89370460 89370267 ID=MsG0380016914.01.T01:exon:12276;Parent=MsG0380016914.01.T01
Chr3 exon 89367679 89367963 89367679 ID=MsG0380016914.01.T01:exon:12275;Parent=MsG0380016914.01.T01
Chr3 CDS 89370579 89370708 89370579 ID=MsG0380016914.01.T01:cds;Parent=MsG0380016914.01.T01
Chr3 CDS 89370267 89370460 89370267 ID=MsG0380016914.01.T01:cds;Parent=MsG0380016914.01.T01
Chr3 CDS 89367679 89367963 89367679 ID=MsG0380016914.01.T01:cds;Parent=MsG0380016914.01.T01
Gene Sequence

>MsG0380016914.01.T01

ATGGGAAAAACAGAAGCATCAACGGAGAAAGGAGAAGCAGCATCGTCAATGGTAGAGGATGAATTGCCTCAGGAGTTTTTGGAACATCTAACCTTGCGTGGCCTACGATTGGATCTCATTGAACCTGGTCGTAAGTACTTGCACGGTGGTGCTATCACTACTCTGGTGGATATCGTAGGCGCAGCCGCAATTCCAGCTGCTGGAAATCCGTGGAATTCTGGAGTTTCCATTGAGATTAATATCTCATGCTTTGATGCTGCTTATGTCAATGAAGAGATTGAGATTGATGCTAGAGTTTTACGAATAGGAAAGGCTGTAGCTGTTAATTCAGGTAAGTACTTGCACGGTGGTGCTATCACTACTTTGGTGGATGTGATAGGCGCAGCCGCAATTCCCGCCGCTGGATTTCCGTGGGAGTCGGGAGTTTCCGTAGAGATCAATGCCTCATGCTTGGATGCTGCCTATGTCAATGTTCGTATTTATCTATCTTATGTTGTTTTAAAGGAATGCATATTTATATCAATAAAAGATGACCAACATAATATGTGTCAACTGACAATGACTAACCATAGATATTTCAATCTCTTAACTATTTGGCTTAAAATTTGA
Protein sequence

>MsG0380016914.01.T01

MGKTEASTEKGEAASSMVEDELPQEFLEHLTLRGLRLDLIEPGRKYLHGGAITTLVDIVGAAAIPAAGNPWNSGVSIEINISCFDAAYVNEEIEIDARVLRIGKAVAVNSGKYLHGGAITTLVDVIGAAAIPAAGFPWESGVSVEINASCLDAAYVNVRIYLSYVVLKECIFISIKDDQHNMCQLTMTNHRYFNLLTIWLKI*