AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017243.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017243.01.T01 MTR_3g103520 81.875 160 26 2 8 165 1 159 4.79e-89 259
MsG0380017243.01.T01 MTR_3g103530 51.786 168 56 6 20 165 17 181 7.34e-43 142
MsG0380017243.01.T01 MTR_1g017260 32.620 187 99 7 8 174 1 180 3.90e-21 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017243.01.T01 AT4G07990 37.870 169 83 6 14 162 21 187 5.59e-25 97.1
MsG0380017243.01.T01 AT4G07990 38.095 168 70 6 14 162 21 173 4.82e-22 89.0
MsG0380017243.01.T01 AT4G07990 38.095 168 70 6 14 162 21 173 5.77e-22 88.2

Find 81 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGTATCCATTTCTGTTTA+TGG 0.125156 3:+93953207 None:intergenic
TTTGATTGTAATTTGGTAAA+AGG 0.182241 3:-93953003 MsG0380017243.01.T01:three_prime_UTR
CTTATTCCTTTCTCTGTTAA+AGG 0.183497 3:+93955216 None:intergenic
TTCTTTCTTTCCTGTTTATA+TGG 0.202517 3:+93954205 None:intergenic
TGCAATACCTAACATCCTTT+TGG 0.237443 3:+93954139 None:intergenic
AGGGACCTTGTTACTTTGTT+TGG 0.261482 3:-93954454 MsG0380017243.01.T01:three_prime_UTR
TACCTCTGCAGTTAGCATTT+AGG 0.264963 3:-93954410 MsG0380017243.01.T01:three_prime_UTR
ACAGAAAAGGCATCCCTAAA+AGG 0.291117 3:-93954592 MsG0380017243.01.T01:three_prime_UTR
AAGAAATGAGAGAATGATAG+AGG 0.315419 3:-93955687 MsG0380017243.01.T01:five_prime_UTR
CTTGATCTCATCATCTGAAT+AGG 0.317040 3:+93955006 None:intergenic
GACTAAGATAATAGTTCGTT+TGG 0.344740 3:+93955585 None:intergenic
TTCTCTGTTAAAGGCGTCTT+GGG 0.350582 3:+93955225 None:intergenic
TTGAGAGAATGGAGAATAAA+CGG 0.353985 3:-93955642 MsG0380017243.01.T01:exon
TCCGATAGGAATCTTCTGTT+TGG 0.362344 3:+93955143 None:intergenic
ACTAAGATAATAGTTCGTTT+GGG 0.371749 3:+93955586 None:intergenic
CAATGCAAGAGGAACGAATA+AGG 0.377454 3:-93955252 MsG0380017243.01.T01:CDS
CTGGGATTAATGGGCATAGT+TGG 0.381707 3:+93954165 None:intergenic
TCTGTTTGGAAATGCTGATT+GGG 0.394030 3:+93955157 None:intergenic
TTTCTCTGTTAAAGGCGTCT+TGG 0.394131 3:+93955224 None:intergenic
TTCTGTTTGGAAATGCTGAT+TGG 0.394374 3:+93955156 None:intergenic
CCAGAGCCCAAAAGGATGTT+AGG 0.397932 3:-93954146 MsG0380017243.01.T01:intron
TTGATCTCATCATCTGAATA+GGG 0.399561 3:+93955007 None:intergenic
GTGTAGGTTTGTTGAGAGAA+TGG 0.400038 3:-93955653 MsG0380017243.01.T01:exon
GCATAGTTTCCGCTATCTCT+TGG 0.406682 3:+93955079 None:intergenic
CTCTTCCTTCTCAATGCATT+AGG 0.407124 3:+93955307 None:intergenic
TTATTATCCCGGTTCTGATC+AGG 0.411577 3:+93954366 None:intergenic
ACAATAGAGGCTTTGAAAGC+TGG 0.414782 3:-93955192 MsG0380017243.01.T01:CDS
CTTATTCGTTCCTCTTGCAT+TGG 0.416428 3:+93955253 None:intergenic
TCATTTGAGGCCATATAAAC+AGG 0.417103 3:-93954215 MsG0380017243.01.T01:three_prime_UTR
ATGGAAGCCATAAACAGAAA+TGG 0.438635 3:-93953214 MsG0380017243.01.T01:three_prime_UTR
AGTATCATCCTGATCAGAAC+CGG 0.438736 3:-93954374 MsG0380017243.01.T01:three_prime_UTR
TTTCATCCTGATTTGATGTC+CGG 0.441246 3:-93954550 MsG0380017243.01.T01:intron
GATCAGAACCGGGATAATAA+AGG 0.449348 3:-93954363 MsG0380017243.01.T01:intron
AGAGGGTTTGTTTATAGTGT+AGG 0.457028 3:-93955669 MsG0380017243.01.T01:five_prime_UTR
AGTTGGGCAATTACTGACTT+TGG 0.458669 3:+93954182 None:intergenic
CATTAATCCCAGAGCCCAAA+AGG 0.459121 3:-93954154 MsG0380017243.01.T01:three_prime_UTR
AATAGGGCGCTTTCCTATAC+CGG 0.466649 3:+93955023 None:intergenic
CAATGCATTAGGCCGAGACT+TGG 0.476282 3:+93955318 None:intergenic
AGGAAGAGTGGTAATTCTTA+CGG 0.478272 3:-93955292 MsG0380017243.01.T01:CDS
AGACTACCGGACATCAAATC+AGG 0.480232 3:+93954544 None:intergenic
TGAGAGAATGGAGAATAAAC+GGG 0.487735 3:-93955641 MsG0380017243.01.T01:exon
TGGGATTAATGGGCATAGTT+GGG 0.489499 3:+93954166 None:intergenic
AGAAGTGATGACTTCATTTG+AGG 0.490829 3:-93954228 MsG0380017243.01.T01:three_prime_UTR
GAAAGGAATAAGTACAATAG+AGG 0.495604 3:-93955205 MsG0380017243.01.T01:CDS
GCAAACATTCAAGGTGAAGA+TGG 0.496000 3:-93953233 MsG0380017243.01.T01:three_prime_UTR
TAATGTAGTTATCCAAGTCT+CGG 0.502343 3:-93955330 MsG0380017243.01.T01:intron
CAGAAAAGGCATCCCTAAAA+GGG 0.506723 3:-93954591 MsG0380017243.01.T01:three_prime_UTR
AACCGAAAAGGAAACAGAAA+AGG 0.510996 3:-93954605 MsG0380017243.01.T01:three_prime_UTR
AAGACGCCTTTAACAGAGAA+AGG 0.512810 3:-93955222 MsG0380017243.01.T01:CDS
CGGCGTTCATACATGACAAT+GGG 0.516968 3:+93953258 None:intergenic
AACGCCGCGGCAAACATTCA+AGG 0.523636 3:-93953242 MsG0380017243.01.T01:three_prime_UTR
CGCCGCCGTCTGTACTATCA+TGG 0.531151 3:-93955552 MsG0380017243.01.T01:intron
AGGACCTAAACTAACCGAAA+AGG 0.539801 3:-93954617 MsG0380017243.01.T01:exon
CTATTCAGATGATGAGATCA+AGG 0.541793 3:-93955005 MsG0380017243.01.T01:CDS
TTTGCACAGTTCACGTTCAG+TGG 0.555114 3:-93955463 MsG0380017243.01.T01:intron
GAGACCTACCTTTATTATCC+CGG 0.558038 3:+93954355 None:intergenic
AACAATAACAGTAATGTGGA+AGG 0.562535 3:+93954960 None:intergenic
GCATTTGTGTGCATAAGTGT+TGG 0.566960 3:-93953134 MsG0380017243.01.T01:three_prime_UTR
TCGAGCTGTACAAAGAAAGA+TGG 0.569201 3:-93953326 MsG0380017243.01.T01:three_prime_UTR
TCCAAACAGAAGATTCCTAT+CGG 0.578708 3:-93955144 MsG0380017243.01.T01:CDS
AGAAATGAGAGAATGATAGA+GGG 0.582056 3:-93955686 MsG0380017243.01.T01:five_prime_UTR
ACATAACAAGCCAATGCAAG+AGG 0.587337 3:-93955263 MsG0380017243.01.T01:CDS
TGAAGTATCATTCTTCCGAT+AGG 0.588015 3:+93955129 None:intergenic
GTCCTAAATGCTAACTGCAG+AGG 0.593151 3:+93954408 None:intergenic
GCAGTTAGCATTTAGGACAA+AGG 0.594396 3:-93954403 MsG0380017243.01.T01:three_prime_UTR
GCAAAACAATAACAGTAATG+TGG 0.604096 3:+93954956 None:intergenic
GCGGCGTTCATACATGACAA+TGG 0.610981 3:+93953257 None:intergenic
CGAGAAACTCCAAGAGATAG+CGG 0.616837 3:-93955088 MsG0380017243.01.T01:CDS
TTCACCTTGAATGTTTGCCG+CGG 0.623617 3:+93953238 None:intergenic
GTCAGCACAACTTCATTGAG+TGG 0.626869 3:-93953285 MsG0380017243.01.T01:three_prime_UTR
CTCGGCCTAATGCATTGAGA+AGG 0.629484 3:-93955312 MsG0380017243.01.T01:CDS
CTAAGATAATAGTTCGTTTG+GGG 0.632044 3:+93955587 None:intergenic
GCTTACCATGATAGTACAGA+CGG 0.635737 3:+93955547 None:intergenic
GTATCATCCTGATCAGAACC+GGG 0.648104 3:-93954373 MsG0380017243.01.T01:three_prime_UTR
TAGAGGCTTTGAAAGCTGGA+AGG 0.650610 3:-93955188 MsG0380017243.01.T01:CDS
CAAAACCAAACAAAGTAACA+AGG 0.652444 3:+93954449 None:intergenic
AATGCATTGAGAAGGAAGAG+TGG 0.692166 3:-93955304 MsG0380017243.01.T01:CDS
ATTGTCATGTATGAACGCCG+CGG 0.738955 3:-93953255 MsG0380017243.01.T01:three_prime_UTR
TGATAGTACAGACGGCGGCG+CGG 0.741856 3:+93955555 None:intergenic
AGAATGATACTTCATACACG+AGG 0.760998 3:-93955120 MsG0380017243.01.T01:CDS
TACCATGATAGTACAGACGG+CGG 0.805874 3:+93955550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGTACATAAATTATTTT+AGG + Chr3:93953902-93953921 None:intergenic 10.0%
!!! AAATTTTCTATGAACTATTT+TGG + Chr3:93955613-93955632 None:intergenic 15.0%
!!! AATTTTCTATGAACTATTTT+GGG + Chr3:93955612-93955631 None:intergenic 15.0%
!!! TAGTTTGTCTAATTAATATT+TGG + Chr3:93954954-93954973 None:intergenic 15.0%
!! ACACATTATAATAATCTGAA+AGG + Chr3:93954143-93954162 None:intergenic 20.0%
!! ATTATCACATAATCATGTTA+TGG - Chr3:93954372-93954391 MsG0380017243.01.T01:three_prime_UTR 20.0%
!! TACAGATTATATTTGTGTTT+CGG - Chr3:93954623-93954642 MsG0380017243.01.T01:intron 20.0%
!! TTATCACATAATCATGTTAT+GGG - Chr3:93954373-93954392 MsG0380017243.01.T01:three_prime_UTR 20.0%
!! TTTGATTGTAATTTGGTAAA+AGG - Chr3:93955653-93955672 MsG0380017243.01.T01:exon 20.0%
!!! AAAGGAAAAGTTATATCTTT+TGG - Chr3:93955149-93955168 MsG0380017243.01.T01:CDS 20.0%
!!! GATATATTTGATGGTAATAA+AGG - Chr3:93955131-93955150 MsG0380017243.01.T01:CDS 20.0%
!!! TGCATTTAATTTCGTTTTTT+AGG - Chr3:93953133-93953152 MsG0380017243.01.T01:three_prime_UTR 20.0%
!!! TTTTCTCTTTGATTGTAATT+TGG - Chr3:93955646-93955665 MsG0380017243.01.T01:exon 20.0%
! AAACTAGTTGTTCAAGAATA+GGG + Chr3:93953826-93953845 None:intergenic 25.0%
! ACTAAGATAATAGTTCGTTT+GGG + Chr3:93953073-93953092 None:intergenic 25.0%
! CAGGAAAATGATATATTTGA+TGG - Chr3:93955122-93955141 MsG0380017243.01.T01:CDS 25.0%
! TAAGTATCCATTTCTGTTTA+TGG + Chr3:93955452-93955471 None:intergenic 25.0%
! TATCACATAATCATGTTATG+GGG - Chr3:93954374-93954393 MsG0380017243.01.T01:three_prime_UTR 25.0%
! TTCTTTCTTTCCTGTTTATA+TGG + Chr3:93954454-93954473 None:intergenic 25.0%
!! TATCATAGAAGCTTCAATTT+TGG + Chr3:93953778-93953797 None:intergenic 25.0%
!!! AACACTTTTAAGATCATACA+AGG + Chr3:93954977-93954996 None:intergenic 25.0%
!!! GTACATAAATTATTTTAGGC+TGG + Chr3:93953898-93953917 None:intergenic 25.0%
AACAATAACAGTAATGTGGA+AGG + Chr3:93953699-93953718 None:intergenic 30.0%
AAGAAATGAGAGAATGATAG+AGG - Chr3:93952969-93952988 MsG0380017243.01.T01:three_prime_UTR 30.0%
AAGTTTAAACAAAGTGTGAG+AGG + Chr3:93954860-93954879 None:intergenic 30.0%
AATCATATGAAACGATGTCA+TGG - Chr3:93953871-93953890 MsG0380017243.01.T01:intron 30.0%
AATTGTGTATCTAATACACG+TGG + Chr3:93955064-93955083 None:intergenic 30.0%
AGAAATGAGAGAATGATAGA+GGG - Chr3:93952970-93952989 MsG0380017243.01.T01:three_prime_UTR 30.0%
AGCTTCATTTCCAGAAAAAA+GGG + Chr3:93955194-93955213 None:intergenic 30.0%
ATTTGTCAGTAAGAATCCAA+AGG + Chr3:93954909-93954928 None:intergenic 30.0%
CAAAACCAAACAAAGTAACA+AGG + Chr3:93954210-93954229 None:intergenic 30.0%
CAGAAAACTCATAATTTAGC+TGG + Chr3:93954581-93954600 None:intergenic 30.0%
CTAAGATAATAGTTCGTTTG+GGG + Chr3:93953072-93953091 None:intergenic 30.0%
CTTATTCCTTTCTCTGTTAA+AGG + Chr3:93953443-93953462 None:intergenic 30.0%
GAAACTAGTTGTTCAAGAAT+AGG + Chr3:93953827-93953846 None:intergenic 30.0%
GAAAGGAATAAGTACAATAG+AGG - Chr3:93953451-93953470 MsG0380017243.01.T01:intron 30.0%
GAACTGTGCAAATTGAAATT+AGG + Chr3:93953185-93953204 None:intergenic 30.0%
GACTAAGATAATAGTTCGTT+TGG + Chr3:93953074-93953093 None:intergenic 30.0%
GCAAAACAATAACAGTAATG+TGG + Chr3:93953703-93953722 None:intergenic 30.0%
GTTAAATTCGTTCAAAGCAT+AGG - Chr3:93955009-93955028 MsG0380017243.01.T01:CDS 30.0%
TAATGTAGTTATCCAAGTCT+CGG - Chr3:93953326-93953345 MsG0380017243.01.T01:three_prime_UTR 30.0%
TGGCTTTCTGATATAATGTT+GGG - Chr3:93954783-93954802 MsG0380017243.01.T01:intron 30.0%
TGTGCAAATTGAAATTAGGA+TGG + Chr3:93953181-93953200 None:intergenic 30.0%
TTGAGAGAATGGAGAATAAA+CGG - Chr3:93953014-93953033 MsG0380017243.01.T01:three_prime_UTR 30.0%
TTGATCTCATCATCTGAATA+GGG + Chr3:93953652-93953671 None:intergenic 30.0%
TTTGTCAGTAAGAATCCAAA+GGG + Chr3:93954908-93954927 None:intergenic 30.0%
! CATTCTCTCATTTCTTTTGT+GGG + Chr3:93952965-93952984 None:intergenic 30.0%
! TCATTCTCTCATTTCTTTTG+TGG + Chr3:93952966-93952985 None:intergenic 30.0%
!! GATTTTGATGCACATATGAA+TGG + Chr3:93953743-93953762 None:intergenic 30.0%
AACCGAAAAGGAAACAGAAA+AGG - Chr3:93954051-93954070 MsG0380017243.01.T01:intron 35.0%
ACTTCACTAACCTATGATAC+TGG - Chr3:93954007-93954026 MsG0380017243.01.T01:intron 35.0%
ACTTTAACCAAATCGTTACG+AGG - Chr3:93954876-93954895 MsG0380017243.01.T01:intron 35.0%
AGAAGTGATGACTTCATTTG+AGG - Chr3:93954428-93954447 MsG0380017243.01.T01:three_prime_UTR 35.0%
AGAATGATACTTCATACACG+AGG - Chr3:93953536-93953555 MsG0380017243.01.T01:intron 35.0%
AGCTTCTATGATACTAAGAC+AGG - Chr3:93953785-93953804 MsG0380017243.01.T01:intron 35.0%
AGGAAGAGTGGTAATTCTTA+CGG - Chr3:93953364-93953383 MsG0380017243.01.T01:intron 35.0%
ATGGAAGCCATAAACAGAAA+TGG - Chr3:93955442-93955461 MsG0380017243.01.T01:CDS 35.0%
CAATATGTCAATATTGCTGC+TGG - Chr3:93954763-93954782 MsG0380017243.01.T01:intron 35.0%
CAGCTTCATTTCCAGAAAAA+AGG + Chr3:93955195-93955214 None:intergenic 35.0%
CTATTCAGATGATGAGATCA+AGG - Chr3:93953651-93953670 MsG0380017243.01.T01:intron 35.0%
CTTGATCTCATCATCTGAAT+AGG + Chr3:93953653-93953672 None:intergenic 35.0%
GCTTCATTTCCAGAAAAAAG+GGG + Chr3:93955193-93955212 None:intergenic 35.0%
TCCAAACAGAAGATTCCTAT+CGG - Chr3:93953512-93953531 MsG0380017243.01.T01:intron 35.0%
TGAGAGAATGGAGAATAAAC+GGG - Chr3:93953015-93953034 MsG0380017243.01.T01:three_prime_UTR 35.0%
TGTGAAAACAACACACACAA+AGG - Chr3:93955099-93955118 MsG0380017243.01.T01:CDS 35.0%
TTCTGTTTGGAAATGCTGAT+TGG + Chr3:93953503-93953522 None:intergenic 35.0%
! AGAGAATGTAGTCCCTTTTA+GGG + Chr3:93954080-93954099 None:intergenic 35.0%
! AGAGGGTTTGTTTATAGTGT+AGG - Chr3:93952987-93953006 MsG0380017243.01.T01:three_prime_UTR 35.0%
! CTGGCTTTCTGATATAATGT+TGG - Chr3:93954782-93954801 MsG0380017243.01.T01:intron 35.0%
! GCAATACCTAACATCCTTTT+GGG + Chr3:93954519-93954538 None:intergenic 35.0%
! TAGAGAATGTAGTCCCTTTT+AGG + Chr3:93954081-93954100 None:intergenic 35.0%
! TCACATCACTACTCAGTTTT+AGG - Chr3:93953604-93953623 MsG0380017243.01.T01:intron 35.0%
! TCATTTGAGGCCATATAAAC+AGG - Chr3:93954441-93954460 MsG0380017243.01.T01:three_prime_UTR 35.0%
! TCTGTTTGGAAATGCTGATT+GGG + Chr3:93953502-93953521 None:intergenic 35.0%
! TCTTTTGTTCCCCTTTTTTC+TGG - Chr3:93955181-93955200 MsG0380017243.01.T01:CDS 35.0%
! TGAAGTATCATTCTTCCGAT+AGG + Chr3:93953530-93953549 None:intergenic 35.0%
! TGCAATACCTAACATCCTTT+TGG + Chr3:93954520-93954539 None:intergenic 35.0%
! TGCCTTTTCTGTTTCCTTTT+CGG + Chr3:93954056-93954075 None:intergenic 35.0%
! TTTCATCCTGATTTGATGTC+CGG - Chr3:93954106-93954125 MsG0380017243.01.T01:intron 35.0%
!! TTTTCGATGGTTCTATGATG+AGG - Chr3:93953223-93953242 MsG0380017243.01.T01:three_prime_UTR 35.0%
!!! CTTTTTTCTGGAAATGAAGC+TGG - Chr3:93955193-93955212 MsG0380017243.01.T01:CDS 35.0%
!!! GTTTCCTTTTCGGTTAGTTT+AGG + Chr3:93954046-93954065 None:intergenic 35.0%
AAAACAACACACACAAAGGC+AGG - Chr3:93955103-93955122 MsG0380017243.01.T01:CDS 40.0%
AACACTTCCACTCTCTATCA+AGG + Chr3:93953936-93953955 None:intergenic 40.0%
AAGACGCCTTTAACAGAGAA+AGG - Chr3:93953434-93953453 MsG0380017243.01.T01:intron 40.0%
AATGCATTGAGAAGGAAGAG+TGG - Chr3:93953352-93953371 MsG0380017243.01.T01:three_prime_UTR 40.0%
ACATAACAAGCCAATGCAAG+AGG - Chr3:93953393-93953412 MsG0380017243.01.T01:intron 40.0%
AGAACCGGGATAATAAAGGT+AGG - Chr3:93954297-93954316 MsG0380017243.01.T01:intron 40.0%
AGGACCTAAACTAACCGAAA+AGG - Chr3:93954039-93954058 MsG0380017243.01.T01:intron 40.0%
AGTATCATCCTGATCAGAAC+CGG - Chr3:93954282-93954301 MsG0380017243.01.T01:intron 40.0%
ATAGGTTAGTGAAGTGACGA+GGG + Chr3:93954002-93954021 None:intergenic 40.0%
CAATGCAAGAGGAACGAATA+AGG - Chr3:93953404-93953423 MsG0380017243.01.T01:intron 40.0%
CTCTTCCTTCTCAATGCATT+AGG + Chr3:93953352-93953371 None:intergenic 40.0%
CTTATTCGTTCCTCTTGCAT+TGG + Chr3:93953406-93953425 None:intergenic 40.0%
GAAAATGCCTCGTAACGATT+TGG + Chr3:93954886-93954905 None:intergenic 40.0%
GAGACCTACCTTTATTATCC+CGG + Chr3:93954304-93954323 None:intergenic 40.0%
GATCAGAACCGGGATAATAA+AGG - Chr3:93954293-93954312 MsG0380017243.01.T01:intron 40.0%
GCAAACATTCAAGGTGAAGA+TGG - Chr3:93955423-93955442 MsG0380017243.01.T01:intron 40.0%
GCATTTGTGTGCATAAGTGT+TGG - Chr3:93955522-93955541 MsG0380017243.01.T01:intron 40.0%
GCTTACCATGATAGTACAGA+CGG + Chr3:93953112-93953131 None:intergenic 40.0%
GCTTATTGCTCTCTTTGCTA+GGG - Chr3:93954183-93954202 MsG0380017243.01.T01:three_prime_UTR 40.0%
TACCTCTGCAGTTAGCATTT+AGG - Chr3:93954246-93954265 MsG0380017243.01.T01:three_prime_UTR 40.0%
TCCAACTGAGTACAATACAG+AGG + Chr3:93954711-93954730 None:intergenic 40.0%
TCCGATAGGAATCTTCTGTT+TGG + Chr3:93953516-93953535 None:intergenic 40.0%
TCGAGCTGTACAAAGAAAGA+TGG - Chr3:93955330-93955349 MsG0380017243.01.T01:intron 40.0%
TGCTTATTGCTCTCTTTGCT+AGG - Chr3:93954182-93954201 MsG0380017243.01.T01:three_prime_UTR 40.0%
! CAGTGGTCAAAACTTTTCGA+TGG - Chr3:93953210-93953229 MsG0380017243.01.T01:three_prime_UTR 40.0%
! GCAGTTAGCATTTAGGACAA+AGG - Chr3:93954253-93954272 MsG0380017243.01.T01:three_prime_UTR 40.0%
! TGGGATTAATGGGCATAGTT+GGG + Chr3:93954493-93954512 None:intergenic 40.0%
! TTATTATCCCGGTTCTGATC+AGG + Chr3:93954293-93954312 None:intergenic 40.0%
!! ACAATAGAGGCTTTGAAAGC+TGG - Chr3:93953464-93953483 MsG0380017243.01.T01:intron 40.0%
!! ACAGAAAAGGCATCCCTAAA+AGG - Chr3:93954064-93954083 MsG0380017243.01.T01:intron 40.0%
!! ACAGAGGCATTGCATATGAT+TGG + Chr3:93954695-93954714 None:intergenic 40.0%
!! AGGGACCTTGTTACTTTGTT+TGG - Chr3:93954202-93954221 MsG0380017243.01.T01:three_prime_UTR 40.0%
!! AGTTGGGCAATTACTGACTT+TGG + Chr3:93954477-93954496 None:intergenic 40.0%
!! CAGAAAAGGCATCCCTAAAA+GGG - Chr3:93954065-93954084 MsG0380017243.01.T01:intron 40.0%
!! GTGTAGGTTTGTTGAGAGAA+TGG - Chr3:93953003-93953022 MsG0380017243.01.T01:three_prime_UTR 40.0%
!! TAACCTATGATACTGGCTCT+TGG - Chr3:93954014-93954033 MsG0380017243.01.T01:intron 40.0%
!! TTCTCTGTTAAAGGCGTCTT+GGG + Chr3:93953434-93953453 None:intergenic 40.0%
!! TTTCTCTGTTAAAGGCGTCT+TGG + Chr3:93953435-93953454 None:intergenic 40.0%
!! TTTTAGGTCTTGACCGGTAT+AGG - Chr3:93953620-93953639 MsG0380017243.01.T01:intron 40.0%
!!! ACTCAGTTTTAGGTCTTGAC+CGG - Chr3:93953614-93953633 MsG0380017243.01.T01:intron 40.0%
!!! TTTTGGGCTCTGGGATTAAT+GGG + Chr3:93954503-93954522 None:intergenic 40.0%
AGACTACCGGACATCAAATC+AGG + Chr3:93954115-93954134 None:intergenic 45.0%
ATTGTCATGTATGAACGCCG+CGG - Chr3:93955401-93955420 MsG0380017243.01.T01:intron 45.0%
CATAGGTTAGTGAAGTGACG+AGG + Chr3:93954003-93954022 None:intergenic 45.0%
CATTAATCCCAGAGCCCAAA+AGG - Chr3:93954502-93954521 MsG0380017243.01.T01:intron 45.0%
CGAGAAACTCCAAGAGATAG+CGG - Chr3:93953568-93953587 MsG0380017243.01.T01:intron 45.0%
CGGCGTTCATACATGACAAT+GGG + Chr3:93955401-93955420 None:intergenic 45.0%
CTATTCGCCTTGATAGAGAG+TGG - Chr3:93953926-93953945 MsG0380017243.01.T01:intron 45.0%
CTGAAAGGAGAACAGACTAC+CGG + Chr3:93954128-93954147 None:intergenic 45.0%
GCATAGTTTCCGCTATCTCT+TGG + Chr3:93953580-93953599 None:intergenic 45.0%
GCCTCTGTATTGTACTCAGT+TGG - Chr3:93954707-93954726 MsG0380017243.01.T01:intron 45.0%
GTATCATCCTGATCAGAACC+GGG - Chr3:93954283-93954302 MsG0380017243.01.T01:intron 45.0%
GTCAGCACAACTTCATTGAG+TGG - Chr3:93955371-93955390 MsG0380017243.01.T01:intron 45.0%
GTCCTAAATGCTAACTGCAG+AGG + Chr3:93954251-93954270 None:intergenic 45.0%
TACCATGATAGTACAGACGG+CGG + Chr3:93953109-93953128 None:intergenic 45.0%
TCAGGTCTTTCTCAACCAGA+TGG + Chr3:93953959-93953978 None:intergenic 45.0%
TGACCAAGAGCCAGTATCAT+AGG + Chr3:93954020-93954039 None:intergenic 45.0%
TTAGTGAAGTGACGAGGGTA+CGG + Chr3:93953997-93954016 None:intergenic 45.0%
TTCACCTTGAATGTTTGCCG+CGG + Chr3:93955421-93955440 None:intergenic 45.0%
TTTGCACAGTTCACGTTCAG+TGG - Chr3:93953193-93953212 MsG0380017243.01.T01:three_prime_UTR 45.0%
! AATAGGGCGCTTTCCTATAC+CGG + Chr3:93953636-93953655 None:intergenic 45.0%
! CTAACATCCTTTTGGGCTCT+GGG + Chr3:93954512-93954531 None:intergenic 45.0%
! CTGGGATTAATGGGCATAGT+TGG + Chr3:93954494-93954513 None:intergenic 45.0%
!! GTTACGAGGCATTTTCCCTT+TGG - Chr3:93954890-93954909 MsG0380017243.01.T01:intron 45.0%
!! TAGAGGCTTTGAAAGCTGGA+AGG - Chr3:93953468-93953487 MsG0380017243.01.T01:intron 45.0%
!! TATGATACTGGCTCTTGGTC+AGG - Chr3:93954019-93954038 MsG0380017243.01.T01:intron 45.0%
!!! CTTTTGGGCTCTGGGATTAA+TGG + Chr3:93954504-93954523 None:intergenic 45.0%
CAATGCATTAGGCCGAGACT+TGG + Chr3:93953341-93953360 None:intergenic 50.0%
CAGTTGGAGCTCGTCATACT+AGG - Chr3:93954723-93954742 MsG0380017243.01.T01:intron 50.0%
CCAGAGCCCAAAAGGATGTT+AGG - Chr3:93954510-93954529 MsG0380017243.01.T01:intron 50.0%
CGGAAGCTCTCAACAAGTTC+AGG + Chr3:93953977-93953996 None:intergenic 50.0%
CTCGGCCTAATGCATTGAGA+AGG - Chr3:93953344-93953363 MsG0380017243.01.T01:three_prime_UTR 50.0%
GCGGCGTTCATACATGACAA+TGG + Chr3:93955402-93955421 None:intergenic 50.0%
! CCTAACATCCTTTTGGGCTC+TGG + Chr3:93954513-93954532 None:intergenic 50.0%
!! GAGAGTGGAAGTGTTCCATC+TGG - Chr3:93953941-93953960 MsG0380017243.01.T01:intron 50.0%
AACGCCGCGGCAAACATTCA+AGG - Chr3:93955414-93955433 MsG0380017243.01.T01:intron 55.0%
CGCCGCCGTCTGTACTATCA+TGG - Chr3:93953104-93953123 MsG0380017243.01.T01:three_prime_UTR 60.0%
TGATAGTACAGACGGCGGCG+CGG + Chr3:93953104-93953123 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93952953 93955725 93952953 ID=MsG0380017243.01;Name=MsG0380017243.01
Chr3 mRNA 93952953 93955725 93952953 ID=MsG0380017243.01.T01;Parent=MsG0380017243.01;Name=MsG0380017243.01.T01;_AED=0.39;_eAED=0.40;_QI=69|0.66|0.57|0.85|0|0|7|749|174
Chr3 exon 93952953 93953379 93952953 ID=MsG0380017243.01.T01:exon:1998;Parent=MsG0380017243.01.T01
Chr3 exon 93954147 93954272 93954147 ID=MsG0380017243.01.T01:exon:1997;Parent=MsG0380017243.01.T01
Chr3 exon 93954364 93954474 93954364 ID=MsG0380017243.01.T01:exon:1996;Parent=MsG0380017243.01.T01
Chr3 exon 93954551 93954637 93954551 ID=MsG0380017243.01.T01:exon:1995;Parent=MsG0380017243.01.T01
Chr3 exon 93954969 93955344 93954969 ID=MsG0380017243.01.T01:exon:1994;Parent=MsG0380017243.01.T01
Chr3 exon 93955434 93955476 93955434 ID=MsG0380017243.01.T01:exon:1993;Parent=MsG0380017243.01.T01
Chr3 exon 93955553 93955725 93955553 ID=MsG0380017243.01.T01:exon:1992;Parent=MsG0380017243.01.T01
Chr3 five_prime_UTR 93955657 93955725 93955657 ID=MsG0380017243.01.T01:five_prime_utr;Parent=MsG0380017243.01.T01
Chr3 CDS 93955553 93955656 93955553 ID=MsG0380017243.01.T01:cds;Parent=MsG0380017243.01.T01
Chr3 CDS 93955434 93955476 93955434 ID=MsG0380017243.01.T01:cds;Parent=MsG0380017243.01.T01
Chr3 CDS 93954969 93955344 93954969 ID=MsG0380017243.01.T01:cds;Parent=MsG0380017243.01.T01
Chr3 CDS 93954636 93954637 93954636 ID=MsG0380017243.01.T01:cds;Parent=MsG0380017243.01.T01
Chr3 three_prime_UTR 93954551 93954635 93954551 ID=MsG0380017243.01.T01:three_prime_utr;Parent=MsG0380017243.01.T01
Chr3 three_prime_UTR 93954364 93954474 93954364 ID=MsG0380017243.01.T01:three_prime_utr;Parent=MsG0380017243.01.T01
Chr3 three_prime_UTR 93954147 93954272 93954147 ID=MsG0380017243.01.T01:three_prime_utr;Parent=MsG0380017243.01.T01
Chr3 three_prime_UTR 93952953 93953379 93952953 ID=MsG0380017243.01.T01:three_prime_utr;Parent=MsG0380017243.01.T01
Gene Sequence

>MsG0380017243.01.T01

ATGGAGAATAAACGGGAAGAAATGAAGAAAGACGATGAAGATAACGACCCCAAACGAACTATTATCTTAGTCGTAGTTACCGCGCCGCCGTCTGTACTATCATGTTCACGTTCAGTGGTCAAAACTTTTCGATGGTTCTATGATGAGTTATCCAAGTCTCGGCCTAATGCATTGAGAAGGAAGAGTGGTAATTCTTACGGAACAAAACATAACAAGCCAATGCAAGAGGAACGAATAAGGCGCGCCCAAGACGCCTTTAACAGAGAAAGGAATAAGTACAATAGAGGCTTTGAAAGCTGGAAGGAACATGCTCCCAATCAGCATTTCCAAACAGAAGATTCCTATCGGAAGAATGATACTTCATACACGAGGACTAGTTATCGAGAAACTCCAAGAGATAGCGGAAACTATGCATTATCACATCACTACTCAGTTTTAGGTCTTGACCGGTATAGGAAAGCGCCCTATTCAGATGATGAGATCAAGGTAACTTTGTTTTTCTCACAATGCCTTCCACATTACTGA
Protein sequence

>MsG0380017243.01.T01

MENKREEMKKDDEDNDPKRTIILVVVTAPPSVLSCSRSVVKTFRWFYDELSKSRPNALRRKSGNSYGTKHNKPMQEERIRRAQDAFNRERNKYNRGFESWKEHAPNQHFQTEDSYRKNDTSYTRTSYRETPRDSGNYALSHHYSVLGLDRYRKAPYSDDEIKVTLFFSQCLPHY*