Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017281.01.T01 | XP_039687742.1 | 96.85 | 381 | 9 | 1 | 1 | 381 | 1 | 378 | 0 | 759 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017281.01.T01 | O80982 | 52.125 | 353 | 117 | 7 | 36 | 379 | 31 | 340 | 3.19E-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017281.01.T01 | G7J7P1 | 96.850 | 381 | 9 | 1 | 1 | 381 | 1 | 378 | 0.0 | 759 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0380017281.01.T01 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0380017281.01 | MsG0480020858.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017281.01.T01 | MTR_3g104550 | 96.850 | 381 | 9 | 1 | 1 | 381 | 1 | 378 | 0.0 | 759 |
| MsG0380017281.01.T01 | MTR_7g095680 | 56.126 | 253 | 103 | 2 | 8 | 252 | 8 | 260 | 6.24e-93 | 283 |
| MsG0380017281.01.T01 | MTR_1g102860 | 62.500 | 216 | 74 | 4 | 36 | 246 | 27 | 240 | 6.38e-91 | 276 |
| MsG0380017281.01.T01 | MTR_5g029680 | 54.911 | 224 | 85 | 4 | 36 | 247 | 21 | 240 | 9.27e-80 | 253 |
| MsG0380017281.01.T01 | MTR_1g071360 | 44.224 | 303 | 143 | 8 | 36 | 331 | 19 | 302 | 5.88e-73 | 231 |
| MsG0380017281.01.T01 | MTR_1g071360 | 44.224 | 303 | 143 | 8 | 36 | 331 | 16 | 299 | 1.36e-72 | 231 |
| MsG0380017281.01.T01 | MTR_4g077970 | 54.327 | 208 | 87 | 2 | 48 | 247 | 11 | 218 | 2.36e-72 | 234 |
| MsG0380017281.01.T01 | MTR_1g061170 | 45.161 | 279 | 147 | 4 | 35 | 310 | 35 | 310 | 1.36e-71 | 231 |
| MsG0380017281.01.T01 | MTR_6g086805 | 45.274 | 201 | 106 | 2 | 49 | 249 | 11 | 207 | 6.24e-53 | 179 |
| MsG0380017281.01.T01 | MTR_8g105780 | 46.392 | 194 | 97 | 2 | 49 | 235 | 22 | 215 | 6.34e-50 | 172 |
| MsG0380017281.01.T01 | MTR_8g087540 | 42.308 | 208 | 116 | 1 | 48 | 255 | 11 | 214 | 2.52e-48 | 169 |
| MsG0380017281.01.T01 | MTR_2g100680 | 39.604 | 202 | 117 | 2 | 47 | 247 | 29 | 226 | 5.79e-48 | 169 |
| MsG0380017281.01.T01 | MTR_2g100670 | 41.146 | 192 | 109 | 1 | 44 | 235 | 28 | 215 | 5.36e-46 | 160 |
| MsG0380017281.01.T01 | MTR_6g043060 | 42.365 | 203 | 107 | 5 | 49 | 248 | 22 | 217 | 7.16e-46 | 160 |
| MsG0380017281.01.T01 | MTR_8g083100 | 43.284 | 201 | 104 | 5 | 50 | 247 | 23 | 216 | 8.08e-46 | 164 |
| MsG0380017281.01.T01 | MTR_2g100670 | 40.933 | 193 | 110 | 1 | 43 | 235 | 135 | 323 | 3.71e-45 | 160 |
| MsG0380017281.01.T01 | MTR_2g017890 | 41.243 | 177 | 101 | 1 | 48 | 221 | 14 | 190 | 2.50e-43 | 155 |
| MsG0380017281.01.T01 | MTR_5g010680 | 62.766 | 94 | 35 | 0 | 47 | 140 | 22 | 115 | 6.74e-38 | 140 |
| MsG0380017281.01.T01 | MTR_7g091370 | 45.062 | 162 | 76 | 3 | 40 | 188 | 9 | 170 | 2.55e-37 | 135 |
| MsG0380017281.01.T01 | MTR_3g101870 | 56.757 | 111 | 43 | 1 | 43 | 153 | 18 | 123 | 1.08e-36 | 137 |
| MsG0380017281.01.T01 | MTR_5g017470 | 55.882 | 102 | 45 | 0 | 46 | 147 | 6 | 107 | 1.15e-36 | 135 |
| MsG0380017281.01.T01 | MTR_0020s0020 | 58.511 | 94 | 39 | 0 | 47 | 140 | 31 | 124 | 1.25e-34 | 130 |
| MsG0380017281.01.T01 | MTR_1g100777 | 54.206 | 107 | 49 | 0 | 47 | 153 | 16 | 122 | 1.59e-34 | 129 |
| MsG0380017281.01.T01 | MTR_1g061170 | 38.537 | 205 | 120 | 4 | 109 | 310 | 14 | 215 | 5.92e-34 | 129 |
| MsG0380017281.01.T01 | MTR_5g089170 | 60.638 | 94 | 37 | 0 | 47 | 140 | 23 | 116 | 9.28e-34 | 126 |
| MsG0380017281.01.T01 | MTR_4g088900 | 36.957 | 184 | 101 | 5 | 28 | 204 | 17 | 192 | 7.34e-29 | 112 |
| MsG0380017281.01.T01 | MTR_4g045757 | 50.746 | 67 | 33 | 0 | 40 | 106 | 5 | 71 | 8.49e-18 | 77.8 |
| MsG0380017281.01.T01 | MTR_5g047190 | 45.977 | 87 | 40 | 2 | 57 | 136 | 1 | 87 | 3.61e-15 | 71.2 |
| MsG0380017281.01.T01 | MTR_2g043940 | 32.168 | 143 | 79 | 5 | 85 | 221 | 7 | 137 | 1.89e-11 | 65.5 |
| MsG0380017281.01.T01 | MTR_6g044340 | 29.299 | 157 | 101 | 4 | 95 | 248 | 8 | 157 | 1.99e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017281.01.T01 | AT2G26150 | 52.125 | 353 | 117 | 7 | 36 | 379 | 31 | 340 | 3.25e-120 | 352 |
| MsG0380017281.01.T01 | AT2G26150 | 52.125 | 353 | 117 | 7 | 36 | 379 | 31 | 340 | 3.25e-120 | 352 |
| MsG0380017281.01.T01 | AT3G22830 | 43.978 | 357 | 159 | 8 | 36 | 359 | 48 | 396 | 8.36e-88 | 271 |
| MsG0380017281.01.T01 | AT3G51910 | 55.357 | 224 | 79 | 3 | 39 | 256 | 19 | 227 | 1.55e-76 | 238 |
| MsG0380017281.01.T01 | AT4G17750 | 51.121 | 223 | 92 | 2 | 47 | 252 | 50 | 272 | 2.49e-75 | 242 |
| MsG0380017281.01.T01 | AT1G32330 | 46.931 | 277 | 122 | 7 | 15 | 274 | 3 | 271 | 2.37e-74 | 239 |
| MsG0380017281.01.T01 | AT1G32330 | 46.931 | 277 | 122 | 7 | 15 | 274 | 3 | 271 | 2.51e-74 | 239 |
| MsG0380017281.01.T01 | AT5G16820 | 50.218 | 229 | 98 | 3 | 27 | 244 | 10 | 233 | 6.45e-74 | 238 |
| MsG0380017281.01.T01 | AT5G16820 | 50.218 | 229 | 98 | 3 | 27 | 244 | 10 | 233 | 6.45e-74 | 238 |
| MsG0380017281.01.T01 | AT3G02990 | 43.929 | 280 | 141 | 6 | 48 | 318 | 22 | 294 | 8.83e-73 | 234 |
| MsG0380017281.01.T01 | AT3G63350 | 43.175 | 315 | 119 | 7 | 25 | 331 | 4 | 266 | 1.50e-69 | 220 |
| MsG0380017281.01.T01 | AT5G43840 | 43.011 | 279 | 125 | 5 | 36 | 297 | 6 | 267 | 2.04e-68 | 217 |
| MsG0380017281.01.T01 | AT2G26150 | 44.484 | 281 | 102 | 8 | 109 | 379 | 49 | 285 | 3.12e-67 | 214 |
| MsG0380017281.01.T01 | AT2G26150 | 44.484 | 281 | 102 | 8 | 109 | 379 | 49 | 285 | 3.12e-67 | 214 |
| MsG0380017281.01.T01 | AT5G03720 | 45.815 | 227 | 111 | 4 | 17 | 240 | 24 | 241 | 1.29e-60 | 201 |
| MsG0380017281.01.T01 | AT5G03720 | 45.815 | 227 | 111 | 4 | 17 | 240 | 24 | 241 | 1.29e-60 | 201 |
| MsG0380017281.01.T01 | AT1G67970 | 47.340 | 188 | 98 | 1 | 49 | 235 | 19 | 206 | 2.21e-55 | 186 |
| MsG0380017281.01.T01 | AT5G54070 | 42.857 | 217 | 109 | 3 | 42 | 257 | 63 | 265 | 2.71e-55 | 185 |
| MsG0380017281.01.T01 | AT4G13980 | 40.201 | 199 | 114 | 2 | 50 | 247 | 24 | 218 | 9.03e-48 | 169 |
| MsG0380017281.01.T01 | AT3G24520 | 45.894 | 207 | 85 | 5 | 49 | 251 | 17 | 200 | 2.40e-47 | 164 |
| MsG0380017281.01.T01 | AT5G45710 | 31.419 | 296 | 184 | 5 | 48 | 333 | 12 | 298 | 2.37e-37 | 138 |
| MsG0380017281.01.T01 | AT5G45710 | 31.419 | 296 | 184 | 5 | 48 | 333 | 12 | 298 | 2.37e-37 | 138 |
| MsG0380017281.01.T01 | AT4G36990 | 52.632 | 114 | 48 | 1 | 47 | 160 | 12 | 119 | 1.51e-36 | 134 |
| MsG0380017281.01.T01 | AT1G46264 | 38.191 | 199 | 70 | 3 | 39 | 187 | 24 | 219 | 3.00e-36 | 135 |
| MsG0380017281.01.T01 | AT2G41690 | 48.889 | 135 | 52 | 2 | 6 | 140 | 14 | 131 | 6.34e-36 | 132 |
| MsG0380017281.01.T01 | AT4G18880 | 44.000 | 175 | 97 | 1 | 48 | 221 | 14 | 188 | 1.37e-35 | 134 |
| MsG0380017281.01.T01 | AT5G62020 | 55.882 | 102 | 45 | 0 | 47 | 148 | 21 | 122 | 1.94e-35 | 132 |
| MsG0380017281.01.T01 | AT4G11660 | 58.511 | 94 | 39 | 0 | 47 | 140 | 57 | 150 | 2.15e-34 | 131 |
| MsG0380017281.01.T01 | AT4G18870 | 34.711 | 121 | 75 | 1 | 49 | 165 | 146 | 266 | 1.35e-20 | 91.3 |
| MsG0380017281.01.T01 | AT4G18870 | 43.678 | 87 | 48 | 1 | 50 | 136 | 14 | 99 | 6.49e-18 | 83.6 |
| MsG0380017281.01.T01 | AT1G77570 | 36.667 | 90 | 54 | 2 | 50 | 136 | 27 | 116 | 6.28e-13 | 66.2 |
Find 138 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCCTGCTCAAAGAAATT+TGG | 0.147116 | 3:-94433057 | None:intergenic |
| GGTGGTGCTTGTATTGAATT+AGG | 0.178257 | 3:+94431783 | MsG0380017281.01.T01:CDS |
| GAGAATTTGCAAAATGATTC+TGG | 0.205764 | 3:+94432086 | MsG0380017281.01.T01:CDS |
| CTCGTAATAGCTTTGTTGTT+TGG | 0.240497 | 3:+94431262 | MsG0380017281.01.T01:CDS |
| TCAATGCTTACAATTGATTA+TGG | 0.241232 | 3:+94433333 | MsG0380017281.01.T01:three_prime_UTR |
| GCTTGGATCAAAATATATTA+AGG | 0.245107 | 3:+94433254 | MsG0380017281.01.T01:three_prime_UTR |
| AAGTGGTAATGAGAGTAATT+TGG | 0.259305 | 3:+94432271 | MsG0380017281.01.T01:CDS |
| TTCAACAACATCAAAGGTTT+TGG | 0.271463 | 3:-94431202 | None:intergenic |
| TCGGCCGATTCTGTTCCTTT+TGG | 0.271891 | 3:+94432973 | MsG0380017281.01.T01:three_prime_UTR |
| TGCAATCCTTCCATTGGTTT+TGG | 0.278910 | 3:-94431153 | None:intergenic |
| AATAAATAATTGCTTTACTT+TGG | 0.287949 | 3:-94432818 | None:intergenic |
| CCACTGATTCCATTGTTTCA+TGG | 0.288131 | 3:+94431232 | MsG0380017281.01.T01:CDS |
| TTGAGTGAATATTAGTGATT+TGG | 0.288171 | 3:+94433393 | MsG0380017281.01.T01:three_prime_UTR |
| TCGTAATAGCTTTGTTGTTT+GGG | 0.292309 | 3:+94431263 | MsG0380017281.01.T01:CDS |
| GGACTTGCTGAGCTTTATTA+TGG | 0.294653 | 3:+94433463 | MsG0380017281.01.T01:three_prime_UTR |
| GCGTTTGTGATAATCGATTT+TGG | 0.303135 | 3:-94430993 | None:intergenic |
| ATAAATAATTGCTTTACTTT+GGG | 0.306574 | 3:-94432817 | None:intergenic |
| AACTCTTCATCTTCCTCTTC+GGG | 0.307939 | 3:+94431117 | MsG0380017281.01.T01:CDS |
| TGTATTGAATTAGGGGAGTA+TGG | 0.320828 | 3:+94431792 | MsG0380017281.01.T01:CDS |
| TAACTCTTCATCTTCCTCTT+CGG | 0.322245 | 3:+94431116 | MsG0380017281.01.T01:CDS |
| TCACTTGAGTTGCACCTTGC+TGG | 0.323733 | 3:+94432510 | MsG0380017281.01.T01:three_prime_UTR |
| TACGAAAGGTAGTTATGTTA+TGG | 0.339386 | 3:-94430945 | None:intergenic |
| TGGTAGAAAAGAATGATAAT+TGG | 0.355979 | 3:+94432402 | MsG0380017281.01.T01:CDS |
| GCAGAACCTTGTTGATCAAA+TGG | 0.360342 | 3:+94432436 | MsG0380017281.01.T01:CDS |
| ATGATGTGTTGCACGCAATT+TGG | 0.362150 | 3:-94432898 | None:intergenic |
| GCTCACTGCTAGTTCGAGTT+TGG | 0.362423 | 3:+94432064 | MsG0380017281.01.T01:CDS |
| TTAGCATATGTCAGTGTTGT+TGG | 0.370710 | 3:+94431081 | MsG0380017281.01.T01:CDS |
| TGATGTGCCCGTGGAGGATT+TGG | 0.372993 | 3:+94432382 | MsG0380017281.01.T01:CDS |
| CTGATGGAGTGATGGTTGTC+AGG | 0.381286 | 3:+94433526 | MsG0380017281.01.T01:three_prime_UTR |
| GTGGTGCTTGTATTGAATTA+GGG | 0.384837 | 3:+94431784 | MsG0380017281.01.T01:CDS |
| TGAATCAAGCAGTGAAGTTA+AGG | 0.388539 | 3:+94432223 | MsG0380017281.01.T01:CDS |
| AAAATGATTCTGGAGCTATA+AGG | 0.395328 | 3:+94432096 | MsG0380017281.01.T01:CDS |
| GGTTGTGAATTGAGTGTTGC+TGG | 0.398252 | 3:+94433439 | MsG0380017281.01.T01:three_prime_UTR |
| AATGGAAGGATTGCACGAAA+TGG | 0.400329 | 3:+94431161 | MsG0380017281.01.T01:CDS |
| AGTGGTAATGAGAGTAATTT+GGG | 0.400460 | 3:+94432272 | MsG0380017281.01.T01:CDS |
| GATGATTGAATGGGAAAAGT+TGG | 0.400946 | 3:+94432847 | MsG0380017281.01.T01:three_prime_UTR |
| ATTAGATAGATAGATAGATT+AGG | 0.404081 | 3:-94430901 | None:intergenic |
| TATTTGTCAAGATGATTGAA+TGG | 0.413414 | 3:+94432837 | MsG0380017281.01.T01:three_prime_UTR |
| CAGAACCTTGTTGATCAAAT+GGG | 0.416106 | 3:+94432437 | MsG0380017281.01.T01:CDS |
| TGGCTGAGATTGTGAAGTTA+AGG | 0.421096 | 3:+94431862 | MsG0380017281.01.T01:CDS |
| GGATCCAAATTTCTTTGAGC+AGG | 0.425783 | 3:+94433053 | MsG0380017281.01.T01:three_prime_UTR |
| TTCTACAACCAATTTGACTA+AGG | 0.426171 | 3:-94432467 | None:intergenic |
| AAATGATTCTGGAGCTATAA+GGG | 0.430722 | 3:+94432097 | MsG0380017281.01.T01:CDS |
| ATTTGTCAAGATGATTGAAT+GGG | 0.451022 | 3:+94432838 | MsG0380017281.01.T01:three_prime_UTR |
| TTAGGGGAGTATGGTCTTGA+AGG | 0.455498 | 3:+94431801 | MsG0380017281.01.T01:CDS |
| ATGATTGAATGGGAAAAGTT+GGG | 0.459488 | 3:+94432848 | MsG0380017281.01.T01:three_prime_UTR |
| GAAGGGAATTAGAGTGAAAG+AGG | 0.460183 | 3:+94431050 | MsG0380017281.01.T01:CDS |
| CTCTTGTAAACGGGGACTGA+TGG | 0.460861 | 3:+94433510 | MsG0380017281.01.T01:three_prime_UTR |
| ACTTCAAGAGGCATTGGTGG+GGG | 0.463645 | 3:+94433580 | MsG0380017281.01.T01:three_prime_UTR |
| GTGAGATTGAGAGGTTGAGA+AGG | 0.465030 | 3:+94431823 | MsG0380017281.01.T01:CDS |
| CTTGGATCAAAATATATTAA+GGG | 0.466517 | 3:+94433255 | MsG0380017281.01.T01:three_prime_UTR |
| GATTCCCACCAACCAACTCT+TGG | 0.469023 | 3:-94432322 | None:intergenic |
| TGATGGTTGTCAGGTGGAGT+TGG | 0.469041 | 3:+94433535 | MsG0380017281.01.T01:three_prime_UTR |
| CATTGTTCGCGGGTCAGTCT+AGG | 0.473031 | 3:+94433114 | MsG0380017281.01.T01:three_prime_UTR |
| ATGGAAGGATTGCACGAAAT+GGG | 0.473051 | 3:+94431162 | MsG0380017281.01.T01:CDS |
| CCAATCACAACTTCATCCTC+TGG | 0.476628 | 3:-94432344 | None:intergenic |
| AATCTCGGCGGAGGAGGGTA+TGG | 0.476788 | 3:+94433197 | MsG0380017281.01.T01:three_prime_UTR |
| TAATCAACCACAGACTCAAT+TGG | 0.480632 | 3:-94432125 | None:intergenic |
| ATTTCGTGCAATCCTTCCAT+TGG | 0.481224 | 3:-94431159 | None:intergenic |
| CATTAGGATAGAATAAGAAA+TGG | 0.486421 | 3:-94432766 | None:intergenic |
| GCGTTGAAATGAAGCGAAAA+CGG | 0.487154 | 3:+94432039 | MsG0380017281.01.T01:CDS |
| ATCCTCTTTGACAAGTCTAA+AGG | 0.490378 | 3:-94433034 | None:intergenic |
| CGTGCAACACATCATTCGTT+AGG | 0.492867 | 3:+94432906 | MsG0380017281.01.T01:three_prime_UTR |
| TGAGATTGAGAGGTTGAGAA+GGG | 0.495911 | 3:+94431824 | MsG0380017281.01.T01:CDS |
| AAGGGAGCAATTATCTGCTA+TGG | 0.496135 | 3:+94431902 | MsG0380017281.01.T01:CDS |
| GGCAGCAGCAGCATAATTCA+AGG | 0.500409 | 3:+94431883 | MsG0380017281.01.T01:CDS |
| CGATGGGAGTTTGCGAACGA+AGG | 0.501252 | 3:+94431675 | MsG0380017281.01.T01:CDS |
| AGCATCAACTAACTCAATGA+AGG | 0.501749 | 3:+94431032 | MsG0380017281.01.T01:exon |
| CAGAGATAACAGTTCCCAAA+AGG | 0.501766 | 3:-94432988 | None:intergenic |
| TTTGTTAATCTCGGCGGAGG+AGG | 0.504378 | 3:+94433191 | MsG0380017281.01.T01:three_prime_UTR |
| TTGAGAGGTTGAGAAGGGAC+AGG | 0.504469 | 3:+94431829 | MsG0380017281.01.T01:CDS |
| TTCGCAAACTCCCATCGATC+CGG | 0.510214 | 3:-94431669 | None:intergenic |
| TTGTTAATCTCGGCGGAGGA+GGG | 0.513306 | 3:+94433192 | MsG0380017281.01.T01:three_prime_UTR |
| TAACTTCAAGAGGCATTGGT+GGG | 0.521478 | 3:+94433578 | MsG0380017281.01.T01:three_prime_UTR |
| AATTATCTGCTATGGAAGCT+AGG | 0.522811 | 3:+94431910 | MsG0380017281.01.T01:CDS |
| CTCCTTTAGACTTGTCAAAG+AGG | 0.523253 | 3:+94433032 | MsG0380017281.01.T01:three_prime_UTR |
| TGATTAACTTCAAGAGGCAT+TGG | 0.524783 | 3:+94433574 | MsG0380017281.01.T01:three_prime_UTR |
| TTATGGTCGTTGTTATGTGT+TGG | 0.531900 | 3:+94433480 | MsG0380017281.01.T01:three_prime_UTR |
| GACTACTATTGAGTCTGAGA+TGG | 0.532873 | 3:+94432175 | MsG0380017281.01.T01:CDS |
| CTGAACCAAGAGTTGGTTGG+TGG | 0.536158 | 3:+94432317 | MsG0380017281.01.T01:CDS |
| TTTGAGAGCATATATATGAA+GGG | 0.537966 | 3:+94433288 | MsG0380017281.01.T01:three_prime_UTR |
| CAAAACCCATTTGATCAACA+AGG | 0.537986 | 3:-94432442 | None:intergenic |
| AAAAGTTGATCCGGATCGAT+GGG | 0.538609 | 3:+94431659 | MsG0380017281.01.T01:CDS |
| GAAAAGTTGATCCGGATCGA+TGG | 0.539674 | 3:+94431658 | MsG0380017281.01.T01:CDS |
| GATGGGAGTTTGCGAACGAA+GGG | 0.539714 | 3:+94431676 | MsG0380017281.01.T01:CDS |
| AATAAAGGATACACATGTGA+TGG | 0.541183 | 3:-94432667 | None:intergenic |
| CAAGCTATGCAGCAAGAGAC+CGG | 0.541548 | 3:+94431762 | MsG0380017281.01.T01:CDS |
| GTTCCCAAAAGGAACAGAAT+CGG | 0.541652 | 3:-94432977 | None:intergenic |
| GGATAGAATAAGAAATGGTA+TGG | 0.543377 | 3:-94432761 | None:intergenic |
| GGATTTACTGAACCAAGAGT+TGG | 0.543897 | 3:+94432310 | MsG0380017281.01.T01:CDS |
| GGAAAGTTGGTAAGTACGAA+AGG | 0.544447 | 3:-94430959 | None:intergenic |
| TTATGGTGATTAACTTCAAG+AGG | 0.544814 | 3:+94433568 | MsG0380017281.01.T01:three_prime_UTR |
| TTTGGGTGATGCTGTGTGGG+AGG | 0.547697 | 3:+94432289 | MsG0380017281.01.T01:CDS |
| CCAGAGGATGAAGTTGTGAT+TGG | 0.548861 | 3:+94432344 | MsG0380017281.01.T01:CDS |
| CTTCAAGAGGCATTGGTGGG+GGG | 0.555126 | 3:+94433581 | MsG0380017281.01.T01:three_prime_UTR |
| TAATTTGGGTGATGCTGTGT+GGG | 0.557732 | 3:+94432286 | MsG0380017281.01.T01:CDS |
| TGGATCTTCAACAACATCAA+AGG | 0.559140 | 3:-94431208 | None:intergenic |
| AACTTCAAGAGGCATTGGTG+GGG | 0.559432 | 3:+94433579 | MsG0380017281.01.T01:three_prime_UTR |
| TTAACTTCAAGAGGCATTGG+TGG | 0.565099 | 3:+94433577 | MsG0380017281.01.T01:three_prime_UTR |
| AAATTACTCTCATTACCACT+TGG | 0.571022 | 3:-94432269 | None:intergenic |
| AAATCTTACACCAAAACCAA+TGG | 0.575232 | 3:+94431143 | MsG0380017281.01.T01:CDS |
| GGAGGAGGGTATGGTGTGCA+TGG | 0.575427 | 3:+94433206 | MsG0380017281.01.T01:three_prime_UTR |
| GTCTTGAAGGTGAGATTGAG+AGG | 0.580331 | 3:+94431814 | MsG0380017281.01.T01:CDS |
| GGCTGTGCCAATTGAGTCTG+TGG | 0.580769 | 3:+94432118 | MsG0380017281.01.T01:CDS |
| GGAAGATTGTACTGCAGAAG+AGG | 0.582683 | 3:+94432644 | MsG0380017281.01.T01:three_prime_UTR |
| CTCTTGTCAAGAACAGCAAG+AGG | 0.589029 | 3:+94432148 | MsG0380017281.01.T01:CDS |
| CCATGAAACAATGGAATCAG+TGG | 0.596228 | 3:-94431232 | None:intergenic |
| TGTGAATTGAGTGTTGCTGG+TGG | 0.601608 | 3:+94433442 | MsG0380017281.01.T01:three_prime_UTR |
| GAAACAATGGAATCAGTGGA+TGG | 0.602123 | 3:-94431228 | None:intergenic |
| CATCAGTCCCCGTTTACAAG+AGG | 0.603177 | 3:-94433509 | None:intergenic |
| TGGTGCTTGTATTGAATTAG+GGG | 0.604898 | 3:+94431785 | MsG0380017281.01.T01:CDS |
| GCATCAACTAACTCAATGAA+GGG | 0.610881 | 3:+94431033 | MsG0380017281.01.T01:exon |
| TGAGAGGTTGAGAAGGGACA+GGG | 0.615785 | 3:+94431830 | MsG0380017281.01.T01:CDS |
| TGAACCAAGAGTTGGTTGGT+GGG | 0.615910 | 3:+94432318 | MsG0380017281.01.T01:CDS |
| TAATTCAATACAAGCACCAC+CGG | 0.616513 | 3:-94431781 | None:intergenic |
| GATTCCATTGTTTCATGGAG+CGG | 0.618876 | 3:+94431237 | MsG0380017281.01.T01:CDS |
| AAAGAATGATAATTGGACTG+TGG | 0.619356 | 3:+94432409 | MsG0380017281.01.T01:CDS |
| TGTAAGATTTGAACCCGAAG+AGG | 0.623342 | 3:-94431130 | None:intergenic |
| GCAGCAGCAGCATAATTCAA+GGG | 0.624420 | 3:+94431884 | MsG0380017281.01.T01:CDS |
| TTCTCAAATTGATGTGCCCG+TGG | 0.628790 | 3:+94432373 | MsG0380017281.01.T01:CDS |
| GTAACGAGGTAAAATAGCAG+TGG | 0.630092 | 3:-94431301 | None:intergenic |
| AGCTCCGCTCCATGAAACAA+TGG | 0.631104 | 3:-94431241 | None:intergenic |
| CTTACACCAAAACCAATGGA+AGG | 0.637289 | 3:+94431147 | MsG0380017281.01.T01:CDS |
| TCAAATTGATGTGCCCGTGG+AGG | 0.639975 | 3:+94432376 | MsG0380017281.01.T01:CDS |
| GCACATAATAGAGAGTTGAA+AGG | 0.641025 | 3:+94432017 | MsG0380017281.01.T01:CDS |
| GAGTTGTAAATCGAATAGCT+TGG | 0.641459 | 3:+94433237 | MsG0380017281.01.T01:three_prime_UTR |
| TTACTGAACCAAGAGTTGGT+TGG | 0.648299 | 3:+94432314 | MsG0380017281.01.T01:CDS |
| TCTTGTCAAGAACAGCAAGA+GGG | 0.653894 | 3:+94432149 | MsG0380017281.01.T01:CDS |
| AACGGGGACTGATGGAGTGA+TGG | 0.660857 | 3:+94433518 | MsG0380017281.01.T01:three_prime_UTR |
| ATGGAGTGATGGTTGTCAGG+TGG | 0.670866 | 3:+94433529 | MsG0380017281.01.T01:three_prime_UTR |
| GTAATTTGGGTGATGCTGTG+TGG | 0.674970 | 3:+94432285 | MsG0380017281.01.T01:CDS |
| TAACAAAGTTCATACCAGCA+AGG | 0.675115 | 3:-94432524 | None:intergenic |
| TTGAAATGAAGCGAAAACGG+AGG | 0.685238 | 3:+94432042 | MsG0380017281.01.T01:CDS |
| GTTGGTTGGTGGGAATCCAG+AGG | 0.687367 | 3:+94432328 | MsG0380017281.01.T01:CDS |
| GCATTGAGTTCAGTTCCAAG+TGG | 0.687922 | 3:+94432254 | MsG0380017281.01.T01:CDS |
| TTACTGTGTTTGAAGTAACG+AGG | 0.690403 | 3:-94431315 | None:intergenic |
| CCACAAAACCCAGATACCCG+CGG | 0.723121 | 3:+94432935 | MsG0380017281.01.T01:three_prime_UTR |
| GCTATGCAGCAAGAGACCGG+TGG | 0.749743 | 3:+94431765 | MsG0380017281.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAATTGCTTTACTT+TGG | - | Chr3:94432821-94432840 | None:intergenic | 15.0% |
| !! | AATGTAGTTAAAAAAACATT+AGG | - | Chr3:94432785-94432804 | None:intergenic | 15.0% |
| !! | ATAAATAATTGCTTTACTTT+GGG | - | Chr3:94432820-94432839 | None:intergenic | 15.0% |
| !! | TAATTGATGTAAAATATGAA+TGG | + | Chr3:94432606-94432625 | MsG0380017281.01.T01:intron | 15.0% |
| !! | AAGTAATAGTTAACTTACAT+AGG | - | Chr3:94431370-94431389 | None:intergenic | 20.0% |
| !! | CTTGGATCAAAATATATTAA+GGG | + | Chr3:94433255-94433274 | MsG0380017281.01.T01:three_prime_UTR | 20.0% |
| !!! | ATGAACTTTGTTATTGTTAT+TGG | + | Chr3:94432534-94432553 | MsG0380017281.01.T01:intron | 20.0% |
| !!! | TCAATCTTTTATACAACAAT+TGG | + | Chr3:94431995-94432014 | MsG0380017281.01.T01:CDS | 20.0% |
| !!! | TGTTGTTTTGTTCAAAATAA+AGG | - | Chr3:94432685-94432704 | None:intergenic | 20.0% |
| !!! | TTTTTTTAACTACATTTTGC+AGG | + | Chr3:94432789-94432808 | MsG0380017281.01.T01:three_prime_UTR | 20.0% |
| ! | ATTTGTCAAGATGATTGAAT+GGG | + | Chr3:94432838-94432857 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| ! | CATTAGGATAGAATAAGAAA+TGG | - | Chr3:94432769-94432788 | None:intergenic | 25.0% |
| ! | GCTTGGATCAAAATATATTA+AGG | + | Chr3:94433254-94433273 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| ! | TATTTGTCAAGATGATTGAA+TGG | + | Chr3:94432837-94432856 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| ! | TCAATGCTTACAATTGATTA+TGG | + | Chr3:94433333-94433352 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| ! | TGGTAGAAAAGAATGATAAT+TGG | + | Chr3:94432402-94432421 | MsG0380017281.01.T01:CDS | 25.0% |
| ! | TTGAATGTAATCATATGTGT+CGG | - | Chr3:94431503-94431522 | None:intergenic | 25.0% |
| ! | TTGAGTGAATATTAGTGATT+TGG | + | Chr3:94433393-94433412 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| !! | AATTTTTGTGTTCATATGCA+GGG | + | Chr3:94431630-94431649 | MsG0380017281.01.T01:intron | 25.0% |
| !! | TTTGAGAGCATATATATGAA+GGG | + | Chr3:94433288-94433307 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| !!! | GGTTTGTTTGTTTTAGTTTT+GGG | - | Chr3:94430927-94430946 | None:intergenic | 25.0% |
| !!! | TCTGATTGTTTTGTTAATCT+CGG | + | Chr3:94433182-94433201 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| !!! | TGGTTTGTTTGTTTTAGTTT+TGG | - | Chr3:94430928-94430947 | None:intergenic | 25.0% |
| !!! | TTTTGAGAGCATATATATGA+AGG | + | Chr3:94433287-94433306 | MsG0380017281.01.T01:three_prime_UTR | 25.0% |
| AAAGAATGATAATTGGACTG+TGG | + | Chr3:94432409-94432428 | MsG0380017281.01.T01:CDS | 30.0% | |
| AAATCTTACACCAAAACCAA+TGG | + | Chr3:94431143-94431162 | MsG0380017281.01.T01:CDS | 30.0% | |
| AAATTACTCTCATTACCACT+TGG | - | Chr3:94432272-94432291 | None:intergenic | 30.0% | |
| AAGAACAAATTCACAAACAC+CGG | - | Chr3:94431566-94431585 | None:intergenic | 30.0% | |
| AATAAAGGATACACATGTGA+TGG | - | Chr3:94432670-94432689 | None:intergenic | 30.0% | |
| ATGATTGAATGGGAAAAGTT+GGG | + | Chr3:94432848-94432867 | MsG0380017281.01.T01:three_prime_UTR | 30.0% | |
| GAGAATTTGCAAAATGATTC+TGG | + | Chr3:94432086-94432105 | MsG0380017281.01.T01:CDS | 30.0% | |
| GGATAGAATAAGAAATGGTA+TGG | - | Chr3:94432764-94432783 | None:intergenic | 30.0% | |
| TACGAAAGGTAGTTATGTTA+TGG | - | Chr3:94430948-94430967 | None:intergenic | 30.0% | |
| TTATCCTGCTCAAAGAAATT+TGG | - | Chr3:94433060-94433079 | None:intergenic | 30.0% | |
| TTATGGTGATTAACTTCAAG+AGG | + | Chr3:94433568-94433587 | MsG0380017281.01.T01:three_prime_UTR | 30.0% | |
| TTCTACAACCAATTTGACTA+AGG | - | Chr3:94432470-94432489 | None:intergenic | 30.0% | |
| ! | AAGTGGTAATGAGAGTAATT+TGG | + | Chr3:94432271-94432290 | MsG0380017281.01.T01:CDS | 30.0% |
| ! | AGTGGTAATGAGAGTAATTT+GGG | + | Chr3:94432272-94432291 | MsG0380017281.01.T01:CDS | 30.0% |
| ! | GAATTTTTGTGTTCATATGC+AGG | + | Chr3:94431629-94431648 | MsG0380017281.01.T01:intron | 30.0% |
| ! | TGGTATTTTCCTCTTGTAAA+CGG | + | Chr3:94433500-94433519 | MsG0380017281.01.T01:three_prime_UTR | 30.0% |
| ! | TTCAACAACATCAAAGGTTT+TGG | - | Chr3:94431205-94431224 | None:intergenic | 30.0% |
| !! | AAAATGATTCTGGAGCTATA+AGG | + | Chr3:94432096-94432115 | MsG0380017281.01.T01:CDS | 30.0% |
| !! | AAATGATTCTGGAGCTATAA+GGG | + | Chr3:94432097-94432116 | MsG0380017281.01.T01:CDS | 30.0% |
| !! | ATGTTTTTGTACATTGTTCG+CGG | + | Chr3:94433103-94433122 | MsG0380017281.01.T01:three_prime_UTR | 30.0% |
| !! | GTTTTGAACCTTAGTCAAAT+TGG | + | Chr3:94432459-94432478 | MsG0380017281.01.T01:exon | 30.0% |
| !! | TCGTAATAGCTTTGTTGTTT+GGG | + | Chr3:94431263-94431282 | MsG0380017281.01.T01:CDS | 30.0% |
| !!! | TCGATTTTGGAGCTTAATTT+TGG | - | Chr3:94430983-94431002 | None:intergenic | 30.0% |
| AATTATCTGCTATGGAAGCT+AGG | + | Chr3:94431910-94431929 | MsG0380017281.01.T01:CDS | 35.0% | |
| AGCATCAACTAACTCAATGA+AGG | + | Chr3:94431032-94431051 | MsG0380017281.01.T01:exon | 35.0% | |
| ATCCTCTTTGACAAGTCTAA+AGG | - | Chr3:94433037-94433056 | None:intergenic | 35.0% | |
| CAAAACCCATTTGATCAACA+AGG | - | Chr3:94432445-94432464 | None:intergenic | 35.0% | |
| CAGAACCTTGTTGATCAAAT+GGG | + | Chr3:94432437-94432456 | MsG0380017281.01.T01:CDS | 35.0% | |
| GAGTTGTAAATCGAATAGCT+TGG | + | Chr3:94433237-94433256 | MsG0380017281.01.T01:three_prime_UTR | 35.0% | |
| GATGATTGAATGGGAAAAGT+TGG | + | Chr3:94432847-94432866 | MsG0380017281.01.T01:three_prime_UTR | 35.0% | |
| GCACATAATAGAGAGTTGAA+AGG | + | Chr3:94432017-94432036 | MsG0380017281.01.T01:CDS | 35.0% | |
| GCATCAACTAACTCAATGAA+GGG | + | Chr3:94431033-94431052 | MsG0380017281.01.T01:exon | 35.0% | |
| GTGGTGCTTGTATTGAATTA+GGG | + | Chr3:94431784-94431803 | MsG0380017281.01.T01:CDS | 35.0% | |
| TAACAAAGTTCATACCAGCA+AGG | - | Chr3:94432527-94432546 | None:intergenic | 35.0% | |
| TAACTCTTCATCTTCCTCTT+CGG | + | Chr3:94431116-94431135 | MsG0380017281.01.T01:CDS | 35.0% | |
| TAATCAACCACAGACTCAAT+TGG | - | Chr3:94432128-94432147 | None:intergenic | 35.0% | |
| TAATTCAATACAAGCACCAC+CGG | - | Chr3:94431784-94431803 | None:intergenic | 35.0% | |
| TGAATCAAGCAGTGAAGTTA+AGG | + | Chr3:94432223-94432242 | MsG0380017281.01.T01:CDS | 35.0% | |
| TGGATCTTCAACAACATCAA+AGG | - | Chr3:94431211-94431230 | None:intergenic | 35.0% | |
| TGGTGCTTGTATTGAATTAG+GGG | + | Chr3:94431785-94431804 | MsG0380017281.01.T01:CDS | 35.0% | |
| TGTATTGAATTAGGGGAGTA+TGG | + | Chr3:94431792-94431811 | MsG0380017281.01.T01:CDS | 35.0% | |
| TTAGCATATGTCAGTGTTGT+TGG | + | Chr3:94431081-94431100 | MsG0380017281.01.T01:CDS | 35.0% | |
| TTATGGTCGTTGTTATGTGT+TGG | + | Chr3:94433480-94433499 | MsG0380017281.01.T01:three_prime_UTR | 35.0% | |
| ! | GGTATTTTCCTCTTGTAAAC+GGG | + | Chr3:94433501-94433520 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| ! | GTATTTTCCTCTTGTAAACG+GGG | + | Chr3:94433502-94433521 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| ! | TGATTAACTTCAAGAGGCAT+TGG | + | Chr3:94433574-94433593 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| ! | TTACTGTGTTTGAAGTAACG+AGG | - | Chr3:94431318-94431337 | None:intergenic | 35.0% |
| !! | CTCGTAATAGCTTTGTTGTT+TGG | + | Chr3:94431262-94431281 | MsG0380017281.01.T01:CDS | 35.0% |
| !! | GATTGTTTTGTTAATCTCGG+CGG | + | Chr3:94433185-94433204 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| !! | GCGTTTGTGATAATCGATTT+TGG | - | Chr3:94430996-94431015 | None:intergenic | 35.0% |
| !! | GGAGCTTAATTTTGGAAAGT+TGG | - | Chr3:94430975-94430994 | None:intergenic | 35.0% |
| !! | TCAAAGGTTTTGGTGAGAAA+TGG | - | Chr3:94431195-94431214 | None:intergenic | 35.0% |
| !! | TGTTTTTGTACATTGTTCGC+GGG | + | Chr3:94433104-94433123 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| !!! | GAACTGCAGCTTTATTTTTG+AGG | + | Chr3:94433415-94433434 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| !!! | GAGTTGGCTTGTATCTTTTA+TGG | + | Chr3:94433551-94433570 | MsG0380017281.01.T01:three_prime_UTR | 35.0% |
| !!! | GGGTTTTAGAAAAGTTGATC+CGG | + | Chr3:94431650-94431669 | MsG0380017281.01.T01:intron | 35.0% |
| AACTCTTCATCTTCCTCTTC+GGG | + | Chr3:94431117-94431136 | MsG0380017281.01.T01:CDS | 40.0% | |
| AAGGGAGCAATTATCTGCTA+TGG | + | Chr3:94431902-94431921 | MsG0380017281.01.T01:CDS | 40.0% | |
| AATGGAAGGATTGCACGAAA+TGG | + | Chr3:94431161-94431180 | MsG0380017281.01.T01:CDS | 40.0% | |
| ATGATGTGTTGCACGCAATT+TGG | - | Chr3:94432901-94432920 | None:intergenic | 40.0% | |
| ATGGAAGGATTGCACGAAAT+GGG | + | Chr3:94431162-94431181 | MsG0380017281.01.T01:CDS | 40.0% | |
| ATTTCGTGCAATCCTTCCAT+TGG | - | Chr3:94431162-94431181 | None:intergenic | 40.0% | |
| CAGAGATAACAGTTCCCAAA+AGG | - | Chr3:94432991-94433010 | None:intergenic | 40.0% | |
| CCAGACAATGTTGATGTATC+CGG | + | Chr3:94431544-94431563 | MsG0380017281.01.T01:intron | 40.0% | |
| CCATGAAACAATGGAATCAG+TGG | - | Chr3:94431235-94431254 | None:intergenic | 40.0% | |
| CTCCTTTAGACTTGTCAAAG+AGG | + | Chr3:94433032-94433051 | MsG0380017281.01.T01:three_prime_UTR | 40.0% | |
| CTTACACCAAAACCAATGGA+AGG | + | Chr3:94431147-94431166 | MsG0380017281.01.T01:CDS | 40.0% | |
| GAAACAATGGAATCAGTGGA+TGG | - | Chr3:94431231-94431250 | None:intergenic | 40.0% | |
| GAAGGGAATTAGAGTGAAAG+AGG | + | Chr3:94431050-94431069 | MsG0380017281.01.T01:CDS | 40.0% | |
| GACTACTATTGAGTCTGAGA+TGG | + | Chr3:94432175-94432194 | MsG0380017281.01.T01:CDS | 40.0% | |
| GATTCCATTGTTTCATGGAG+CGG | + | Chr3:94431237-94431256 | MsG0380017281.01.T01:CDS | 40.0% | |
| GCAGAACCTTGTTGATCAAA+TGG | + | Chr3:94432436-94432455 | MsG0380017281.01.T01:CDS | 40.0% | |
| GCGTTGAAATGAAGCGAAAA+CGG | + | Chr3:94432039-94432058 | MsG0380017281.01.T01:CDS | 40.0% | |
| GGATCCAAATTTCTTTGAGC+AGG | + | Chr3:94433053-94433072 | MsG0380017281.01.T01:three_prime_UTR | 40.0% | |
| GGATTTACTGAACCAAGAGT+TGG | + | Chr3:94432310-94432329 | MsG0380017281.01.T01:CDS | 40.0% | |
| GGTGGTGCTTGTATTGAATT+AGG | + | Chr3:94431783-94431802 | MsG0380017281.01.T01:CDS | 40.0% | |
| GTAACGAGGTAAAATAGCAG+TGG | - | Chr3:94431304-94431323 | None:intergenic | 40.0% | |
| GTTCCCAAAAGGAACAGAAT+CGG | - | Chr3:94432980-94432999 | None:intergenic | 40.0% | |
| TAATTTGGGTGATGCTGTGT+GGG | + | Chr3:94432286-94432305 | MsG0380017281.01.T01:CDS | 40.0% | |
| TCTTGTCAAGAACAGCAAGA+GGG | + | Chr3:94432149-94432168 | MsG0380017281.01.T01:CDS | 40.0% | |
| TGAGATTGAGAGGTTGAGAA+GGG | + | Chr3:94431824-94431843 | MsG0380017281.01.T01:CDS | 40.0% | |
| TGGCTGAGATTGTGAAGTTA+AGG | + | Chr3:94431862-94431881 | MsG0380017281.01.T01:CDS | 40.0% | |
| TGTAAGATTTGAACCCGAAG+AGG | - | Chr3:94431133-94431152 | None:intergenic | 40.0% | |
| TTGAAATGAAGCGAAAACGG+AGG | + | Chr3:94432042-94432061 | MsG0380017281.01.T01:CDS | 40.0% | |
| ! | AAAAGTTGATCCGGATCGAT+GGG | + | Chr3:94431659-94431678 | MsG0380017281.01.T01:CDS | 40.0% |
| ! | CTTTTCTACCAAATCCTCCA+CGG | - | Chr3:94432393-94432412 | None:intergenic | 40.0% |
| ! | TTACTGAACCAAGAGTTGGT+TGG | + | Chr3:94432314-94432333 | MsG0380017281.01.T01:CDS | 40.0% |
| ! | TTTTCTACCAAATCCTCCAC+GGG | - | Chr3:94432392-94432411 | None:intergenic | 40.0% |
| !! | AAGGTTTTGGTGAGAAATGG+AGG | - | Chr3:94431192-94431211 | None:intergenic | 40.0% |
| !! | CCACTGATTCCATTGTTTCA+TGG | + | Chr3:94431232-94431251 | MsG0380017281.01.T01:CDS | 40.0% |
| !! | CTTTTGGGAACTGTTATCTC+TGG | + | Chr3:94432989-94433008 | MsG0380017281.01.T01:three_prime_UTR | 40.0% |
| !! | GGAAAGTTGGTAAGTACGAA+AGG | - | Chr3:94430962-94430981 | None:intergenic | 40.0% |
| !! | GGACTTGCTGAGCTTTATTA+TGG | + | Chr3:94433463-94433482 | MsG0380017281.01.T01:three_prime_UTR | 40.0% |
| !! | TAACTTCAAGAGGCATTGGT+GGG | + | Chr3:94433578-94433597 | MsG0380017281.01.T01:three_prime_UTR | 40.0% |
| !! | TTAACTTCAAGAGGCATTGG+TGG | + | Chr3:94433577-94433596 | MsG0380017281.01.T01:three_prime_UTR | 40.0% |
| !!! | CTGCAGCTTTATTTTTGAGG+TGG | + | Chr3:94433418-94433437 | MsG0380017281.01.T01:three_prime_UTR | 40.0% |
| !!! | TGCAATCCTTCCATTGGTTT+TGG | - | Chr3:94431156-94431175 | None:intergenic | 40.0% |
| AAACGCAAAAAAACTGCCGC+GGG | - | Chr3:94432954-94432973 | None:intergenic | 45.0% | |
| CCAATCACAACTTCATCCTC+TGG | - | Chr3:94432347-94432366 | None:intergenic | 45.0% | |
| CCAGAGGATGAAGTTGTGAT+TGG | + | Chr3:94432344-94432363 | MsG0380017281.01.T01:CDS | 45.0% | |
| CCGGATACATCAACATTGTC+TGG | - | Chr3:94431547-94431566 | None:intergenic | 45.0% | |
| CGTGCAACACATCATTCGTT+AGG | + | Chr3:94432906-94432925 | MsG0380017281.01.T01:three_prime_UTR | 45.0% | |
| CTCTTGTCAAGAACAGCAAG+AGG | + | Chr3:94432148-94432167 | MsG0380017281.01.T01:CDS | 45.0% | |
| GAAACGCAAAAAAACTGCCG+CGG | - | Chr3:94432955-94432974 | None:intergenic | 45.0% | |
| GCAGCAGCAGCATAATTCAA+GGG | + | Chr3:94431884-94431903 | MsG0380017281.01.T01:CDS | 45.0% | |
| GCATTGAGTTCAGTTCCAAG+TGG | + | Chr3:94432254-94432273 | MsG0380017281.01.T01:CDS | 45.0% | |
| GGAAGATTGTACTGCAGAAG+AGG | + | Chr3:94432644-94432663 | MsG0380017281.01.T01:three_prime_UTR | 45.0% | |
| GTAATTTGGGTGATGCTGTG+TGG | + | Chr3:94432285-94432304 | MsG0380017281.01.T01:CDS | 45.0% | |
| GTCTTGAAGGTGAGATTGAG+AGG | + | Chr3:94431814-94431833 | MsG0380017281.01.T01:CDS | 45.0% | |
| GTGAGATTGAGAGGTTGAGA+AGG | + | Chr3:94431823-94431842 | MsG0380017281.01.T01:CDS | 45.0% | |
| TTCTCAAATTGATGTGCCCG+TGG | + | Chr3:94432373-94432392 | MsG0380017281.01.T01:CDS | 45.0% | |
| ! | GAAAAGTTGATCCGGATCGA+TGG | + | Chr3:94431658-94431677 | MsG0380017281.01.T01:CDS | 45.0% |
| ! | GGTTGTGAATTGAGTGTTGC+TGG | + | Chr3:94433439-94433458 | MsG0380017281.01.T01:three_prime_UTR | 45.0% |
| ! | TGAACCAAGAGTTGGTTGGT+GGG | + | Chr3:94432318-94432337 | MsG0380017281.01.T01:CDS | 45.0% |
| ! | TGTGAATTGAGTGTTGCTGG+TGG | + | Chr3:94433442-94433461 | MsG0380017281.01.T01:three_prime_UTR | 45.0% |
| ! | TTAGGGGAGTATGGTCTTGA+AGG | + | Chr3:94431801-94431820 | MsG0380017281.01.T01:CDS | 45.0% |
| !! | AACTTCAAGAGGCATTGGTG+GGG | + | Chr3:94433579-94433598 | MsG0380017281.01.T01:three_prime_UTR | 45.0% |
| !! | AAGGGACAGGGCTGTTTTAA+TGG | + | Chr3:94431842-94431861 | MsG0380017281.01.T01:CDS | 45.0% |
| !! | GAATGGCTTTGTATGCAGCA+GGG | + | Chr3:94432623-94432642 | MsG0380017281.01.T01:intron | 45.0% |
| !! | GGTATCTGGGTTTTGTGGAA+TGG | - | Chr3:94432933-94432952 | None:intergenic | 45.0% |
| !! | GTTTTGGTGAGAAATGGAGG+TGG | - | Chr3:94431189-94431208 | None:intergenic | 45.0% |
| !! | TGAATGGCTTTGTATGCAGC+AGG | + | Chr3:94432622-94432641 | MsG0380017281.01.T01:intron | 45.0% |
| !! | TGTTTTGTTAATCTCGGCGG+AGG | + | Chr3:94433188-94433207 | MsG0380017281.01.T01:three_prime_UTR | 45.0% |
| !!! | CGAACGAAGGGTTTTTAGCT+GGG | + | Chr3:94431688-94431707 | MsG0380017281.01.T01:CDS | 45.0% |
| !!! | GCGGCAGTTTTTTTGCGTTT+CGG | + | Chr3:94432954-94432973 | MsG0380017281.01.T01:three_prime_UTR | 45.0% |
| AAAAAACTGCCGCGGGTATC+TGG | - | Chr3:94432947-94432966 | None:intergenic | 50.0% | |
| AAAAACTGCCGCGGGTATCT+GGG | - | Chr3:94432946-94432965 | None:intergenic | 50.0% | |
| AGCTCCGCTCCATGAAACAA+TGG | - | Chr3:94431244-94431263 | None:intergenic | 50.0% | |
| ATGGAGTGATGGTTGTCAGG+TGG | + | Chr3:94433529-94433548 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| CAAGCTATGCAGCAAGAGAC+CGG | + | Chr3:94431762-94431781 | MsG0380017281.01.T01:CDS | 50.0% | |
| CATCAGTCCCCGTTTACAAG+AGG | - | Chr3:94433512-94433531 | None:intergenic | 50.0% | |
| CTCTTGTAAACGGGGACTGA+TGG | + | Chr3:94433510-94433529 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| CTGATGGAGTGATGGTTGTC+AGG | + | Chr3:94433526-94433545 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| GATGGGAGTTTGCGAACGAA+GGG | + | Chr3:94431676-94431695 | MsG0380017281.01.T01:CDS | 50.0% | |
| GATTCCCACCAACCAACTCT+TGG | - | Chr3:94432325-94432344 | None:intergenic | 50.0% | |
| GGCAGCAGCAGCATAATTCA+AGG | + | Chr3:94431883-94431902 | MsG0380017281.01.T01:CDS | 50.0% | |
| TCAAATTGATGTGCCCGTGG+AGG | + | Chr3:94432376-94432395 | MsG0380017281.01.T01:CDS | 50.0% | |
| TGAGAGGTTGAGAAGGGACA+GGG | + | Chr3:94431830-94431849 | MsG0380017281.01.T01:CDS | 50.0% | |
| TGATGGTTGTCAGGTGGAGT+TGG | + | Chr3:94433535-94433554 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| TTCGCAAACTCCCATCGATC+CGG | - | Chr3:94431672-94431691 | None:intergenic | 50.0% | |
| TTGAGAGGTTGAGAAGGGAC+AGG | + | Chr3:94431829-94431848 | MsG0380017281.01.T01:CDS | 50.0% | |
| TTGTTAATCTCGGCGGAGGA+GGG | + | Chr3:94433192-94433211 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| TTTGTTAATCTCGGCGGAGG+AGG | + | Chr3:94433191-94433210 | MsG0380017281.01.T01:three_prime_UTR | 50.0% | |
| ! | CTGAACCAAGAGTTGGTTGG+TGG | + | Chr3:94432317-94432336 | MsG0380017281.01.T01:CDS | 50.0% |
| ! | GCTCACTGCTAGTTCGAGTT+TGG | + | Chr3:94432064-94432083 | MsG0380017281.01.T01:CDS | 50.0% |
| ! | TCACTTGAGTTGCACCTTGC+TGG | + | Chr3:94432510-94432529 | MsG0380017281.01.T01:three_prime_UTR | 50.0% |
| !! | ACTTCAAGAGGCATTGGTGG+GGG | + | Chr3:94433580-94433599 | MsG0380017281.01.T01:three_prime_UTR | 50.0% |
| !! | CGGCCGATTCTGTTCCTTTT+GGG | + | Chr3:94432974-94432993 | MsG0380017281.01.T01:three_prime_UTR | 50.0% |
| !! | TCGGCCGATTCTGTTCCTTT+TGG | + | Chr3:94432973-94432992 | MsG0380017281.01.T01:three_prime_UTR | 50.0% |
| !!! | AAGGGTTTTTAGCTGGGCAG+AGG | + | Chr3:94431694-94431713 | MsG0380017281.01.T01:CDS | 50.0% |
| !!! | GCGAACGAAGGGTTTTTAGC+TGG | + | Chr3:94431687-94431706 | MsG0380017281.01.T01:CDS | 50.0% |
| AACGGGGACTGATGGAGTGA+TGG | + | Chr3:94433518-94433537 | MsG0380017281.01.T01:three_prime_UTR | 55.0% | |
| CATTGTTCGCGGGTCAGTCT+AGG | + | Chr3:94433114-94433133 | MsG0380017281.01.T01:three_prime_UTR | 55.0% | |
| CCACAAAACCCAGATACCCG+CGG | + | Chr3:94432935-94432954 | MsG0380017281.01.T01:three_prime_UTR | 55.0% | |
| CGATGGGAGTTTGCGAACGA+AGG | + | Chr3:94431675-94431694 | MsG0380017281.01.T01:CDS | 55.0% | |
| GGCTGTGCCAATTGAGTCTG+TGG | + | Chr3:94432118-94432137 | MsG0380017281.01.T01:CDS | 55.0% | |
| TGATGTGCCCGTGGAGGATT+TGG | + | Chr3:94432382-94432401 | MsG0380017281.01.T01:CDS | 55.0% | |
| TTTGGGTGATGCTGTGTGGG+AGG | + | Chr3:94432289-94432308 | MsG0380017281.01.T01:CDS | 55.0% | |
| !! | CTTCAAGAGGCATTGGTGGG+GGG | + | Chr3:94433581-94433600 | MsG0380017281.01.T01:three_prime_UTR | 55.0% |
| !! | GTTGGTTGGTGGGAATCCAG+AGG | + | Chr3:94432328-94432347 | MsG0380017281.01.T01:CDS | 55.0% |
| AATCTCGGCGGAGGAGGGTA+TGG | + | Chr3:94433197-94433216 | MsG0380017281.01.T01:three_prime_UTR | 60.0% | |
| GCTATGCAGCAAGAGACCGG+TGG | + | Chr3:94431765-94431784 | MsG0380017281.01.T01:CDS | 60.0% | |
| ! | CCGCGGGTATCTGGGTTTTG+TGG | - | Chr3:94432938-94432957 | None:intergenic | 60.0% |
| ! | GGAGGAGGGTATGGTGTGCA+TGG | + | Chr3:94433206-94433225 | MsG0380017281.01.T01:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 94430904 | 94433609 | 94430904 | ID=MsG0380017281.01;Name=MsG0380017281.01 |
| Chr3 | mRNA | 94430904 | 94433609 | 94430904 | ID=MsG0380017281.01.T01;Parent=MsG0380017281.01;Name=MsG0380017281.01.T01;_AED=0.13;_eAED=0.13;_QI=144|1|1|1|0.5|0.33|3|1025|381 |
| Chr3 | exon | 94430904 | 94431371 | 94430904 | ID=MsG0380017281.01.T01:exon:12945;Parent=MsG0380017281.01.T01 |
| Chr3 | exon | 94431651 | 94432531 | 94431651 | ID=MsG0380017281.01.T01:exon:12946;Parent=MsG0380017281.01.T01 |
| Chr3 | exon | 94432644 | 94433609 | 94432644 | ID=MsG0380017281.01.T01:exon:12947;Parent=MsG0380017281.01.T01 |
| Chr3 | five_prime_UTR | 94430904 | 94431047 | 94430904 | ID=MsG0380017281.01.T01:five_prime_utr;Parent=MsG0380017281.01.T01 |
| Chr3 | CDS | 94431048 | 94431371 | 94431048 | ID=MsG0380017281.01.T01:cds;Parent=MsG0380017281.01.T01 |
| Chr3 | CDS | 94431651 | 94432472 | 94431651 | ID=MsG0380017281.01.T01:cds;Parent=MsG0380017281.01.T01 |
| Chr3 | three_prime_UTR | 94432473 | 94432531 | 94432473 | ID=MsG0380017281.01.T01:three_prime_utr;Parent=MsG0380017281.01.T01 |
| Chr3 | three_prime_UTR | 94432644 | 94433609 | 94432644 | ID=MsG0380017281.01.T01:three_prime_utr;Parent=MsG0380017281.01.T01 |
| Gene Sequence |
| Protein sequence |
