AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017581.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017581.01.T01 MTR_3g109330 94.077 439 5 1 1 418 1 439 0.0 815
MsG0380017581.01.T01 MTR_3g109330 94.366 426 11 3 1 418 1 421 0.0 782
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017581.01.T01 AT4G31340 56.968 409 149 5 31 418 35 437 8.49e-154 442
MsG0380017581.01.T01 AT2G24420 52.448 429 172 6 17 418 17 440 9.01e-147 424
MsG0380017581.01.T01 AT2G24420 52.448 429 172 6 17 418 17 440 9.01e-147 424
MsG0380017581.01.T01 AT4G31340 56.883 385 141 3 31 394 35 415 4.80e-144 417
MsG0380017581.01.T01 AT4G30090 32.292 384 212 8 40 416 44 386 6.19e-49 171

Find 117 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAATTGAGTTGATCTAAT+TGG 0.198323 3:-98087359 None:intergenic
AAGAAGGTTGTTCTCGCTTA+TGG 0.201487 3:+98090444 MsG0380017581.01.T01:CDS
AAGAATAAACCAAATGAAAA+AGG 0.209802 3:-98093132 None:intergenic
AAGTAACGAAGGAGAAAATT+AGG 0.226102 3:-98087287 None:intergenic
AAAAGGCACAAGCTGGAAAA+TGG 0.236033 3:+98089823 MsG0380017581.01.T01:CDS
GTTTGGGTGTTCATGTATTA+TGG 0.244150 3:+98092908 MsG0380017581.01.T01:three_prime_UTR
ACTCTAGCTATTAAGATAAT+AGG 0.265678 3:-98091390 None:intergenic
TATGCAGGCCTCTGCCCTTC+TGG 0.268328 3:+98091362 MsG0380017581.01.T01:intron
GAAACTTATACCTGATAATA+AGG 0.301355 3:-98090262 None:intergenic
AACACAAGAATTGAAGAAAA+AGG 0.318070 3:+98087682 MsG0380017581.01.T01:CDS
TTGGATTGATACCGAGGAAT+TGG 0.318579 3:-98087386 None:intergenic
GAATGAGGTTGCTTCTCTTC+AGG 0.323946 3:+98087769 MsG0380017581.01.T01:CDS
ATTCTAGGCCCTAGAGAAAA+AGG 0.331966 3:+98089806 MsG0380017581.01.T01:intron
ACCTCTTGCTACTAAAGAAT+TGG 0.345133 3:+98091239 MsG0380017581.01.T01:CDS
GAATGCTACTCAACTTATCT+TGG 0.345760 3:-98087736 None:intergenic
ATCTAAGACTAACCAGAAAA+TGG 0.347393 3:-98091421 None:intergenic
TCTCGCTTATGGGAATTTCT+TGG 0.348918 3:+98090455 MsG0380017581.01.T01:CDS
CACACAAAGAAACTGATTCA+TGG 0.362511 3:+98093080 MsG0380017581.01.T01:three_prime_UTR
AGCTTTGTTGGCGGTGTTGA+TGG 0.364823 3:+98087227 MsG0380017581.01.T01:exon
ATTCATGGTTTATTCTTTGT+TGG 0.369797 3:+98093095 MsG0380017581.01.T01:three_prime_UTR
CTTCATGTTATCTACTTGTC+TGG 0.380045 3:-98091651 None:intergenic
TTCTGTATCTTGCAGATGGC+TGG 0.383427 3:+98092778 MsG0380017581.01.T01:intron
ATGGTGCTTGGCTTCCTCCT+TGG 0.385003 3:+98089469 MsG0380017581.01.T01:CDS
TATCATCTGCAGCAGCAAAA+AGG 0.397213 3:+98091566 MsG0380017581.01.T01:intron
AGAAGGTTGTTCTCGCTTAT+GGG 0.403445 3:+98090445 MsG0380017581.01.T01:CDS
ATGTGTAGATCCTTATTATC+AGG 0.406758 3:+98090252 MsG0380017581.01.T01:CDS
AATCTTGATACCAAACCCTT+TGG 0.421657 3:+98087120 MsG0380017581.01.T01:five_prime_UTR
GATACCGAGGAATTGGATCT+TGG 0.433047 3:-98087379 None:intergenic
GTTGGGTGCACAATATTGTT+TGG 0.433654 3:+98092891 MsG0380017581.01.T01:three_prime_UTR
TTGGGTGCACAATATTGTTT+GGG 0.444050 3:+98092892 MsG0380017581.01.T01:three_prime_UTR
GTCATTGGATGCCGAGGAGC+AGG 0.448017 3:+98087964 MsG0380017581.01.T01:CDS
AAACTTATAGTACAGACAAC+TGG 0.452466 3:-98093055 None:intergenic
TTGCAGATGGCTGGCACATG+TGG 0.454398 3:+98092787 MsG0380017581.01.T01:intron
GGACGTTTCACTGTAGAGTT+GGG 0.456000 3:+98092874 MsG0380017581.01.T01:three_prime_UTR
GGGAGCAAGTGCGTCCTTTG+AGG 0.460893 3:-98090209 None:intergenic
AGAAAGTGAACTGGGAATCT+CGG 0.463402 3:+98088146 MsG0380017581.01.T01:CDS
AAAGGCACAAGCTGGAAAAT+GGG 0.463620 3:+98089824 MsG0380017581.01.T01:CDS
TGCAGATGGCTGGCACATGT+GGG 0.465313 3:+98092788 MsG0380017581.01.T01:intron
GACCACTGTTCTTTCACAGC+TGG 0.466702 3:-98090118 None:intergenic
TAAAGAATTGGAATGGTTTG+CGG 0.470283 3:+98091251 MsG0380017581.01.T01:CDS
CAGTGCTTGCACATGAGGTT+CGG 0.473641 3:-98090158 None:intergenic
TAGCAAGCCATACATTGATC+AGG 0.474392 3:+98090362 MsG0380017581.01.T01:CDS
AGTAACGAAGGAGAAAATTA+GGG 0.474409 3:-98087286 None:intergenic
AAAACAGTGAGAAAGTGAAC+TGG 0.480727 3:+98088137 MsG0380017581.01.T01:CDS
TCCGAACGAAGCTTTGTTGG+CGG 0.488781 3:+98087218 MsG0380017581.01.T01:five_prime_UTR
AATAAACATATACTTGAAAG+TGG 0.489711 3:-98093014 None:intergenic
AGGACGTTTCACTGTAGAGT+TGG 0.491038 3:+98092873 MsG0380017581.01.T01:three_prime_UTR
AGAACAACCTTCTTTGTGTA+GGG 0.494541 3:-98090435 None:intergenic
GAAGTCAGTGCTTGCACATG+AGG 0.495088 3:-98090163 None:intergenic
AACATAAAAGAGTGAGTACC+AGG 0.495735 3:-98092951 None:intergenic
TGTACACTATATTCGTAGTA+AGG 0.505415 3:+98089497 MsG0380017581.01.T01:CDS
GAAAGTGAACTGGGAATCTC+GGG 0.506911 3:+98088147 MsG0380017581.01.T01:CDS
CATTCAATCCTTGCAGAATG+AGG 0.508270 3:+98087754 MsG0380017581.01.T01:CDS
ATGATCAGACTCATGGTGCT+TGG 0.513875 3:+98089457 MsG0380017581.01.T01:intron
ACGTCTCTTGGACAGTAGCT+TGG 0.519002 3:-98091194 None:intergenic
GTTATATTTGTTATTAAACC+TGG 0.519899 3:+98092933 MsG0380017581.01.T01:three_prime_UTR
TTGCTACTAAAGAATTGGAA+TGG 0.520379 3:+98091244 MsG0380017581.01.T01:CDS
TATTTAGGAAGAAATGTTGA+AGG 0.522472 3:+98089064 MsG0380017581.01.T01:intron
ACCGCCAACAAAGCTTCGTT+CGG 0.522762 3:-98087219 None:intergenic
ACAAGTAGATAACATGAAGT+TGG 0.525848 3:+98091655 MsG0380017581.01.T01:exon
AGATAATAGGCAAGGCCAGA+AGG 0.525870 3:-98091377 None:intergenic
TCCAATTCTTTAGTAGCAAG+AGG 0.528573 3:-98091240 None:intergenic
AGCCACTGCATATCATCGCC+AGG 0.534905 3:+98090482 MsG0380017581.01.T01:CDS
GTAGCGACCTGATCAATGTA+TGG 0.537102 3:-98090369 None:intergenic
AGCTTTACGACGAGTGTGGT+GGG 0.538967 3:-98091616 None:intergenic
CTACATATTTATTTGAACGT+GGG 0.542254 3:+98092812 MsG0380017581.01.T01:three_prime_UTR
TGCCGGTGAACTACAGAAGC+AGG 0.548974 3:+98088006 MsG0380017581.01.T01:CDS
AGGCAAGGCCAGAAGGGCAG+AGG 0.549576 3:-98091370 None:intergenic
GGAAAGGCTCATGCACGTGC+CGG 0.552710 3:+98087989 MsG0380017581.01.T01:CDS
GATAACATGAAGTTGGCTCC+TGG 0.552779 3:+98091662 MsG0380017581.01.T01:exon
TTTCTCCTTCGTTACTTCCG+AGG 0.559854 3:+98087293 MsG0380017581.01.T01:CDS
TGCCGAGGAGCAGGTTGGAA+AGG 0.563199 3:+98087973 MsG0380017581.01.T01:CDS
TACATATTTATTTGAACGTG+GGG 0.566874 3:+98092813 MsG0380017581.01.T01:three_prime_UTR
ACAGGTTCAAAAGATAAATG+AGG 0.567365 3:+98088897 MsG0380017581.01.T01:intron
TAGCTTTACGACGAGTGTGG+TGG 0.567556 3:-98091617 None:intergenic
GAGAACAACCTTCTTTGTGT+AGG 0.572587 3:-98090436 None:intergenic
GATAATAGGCAAGGCCAGAA+GGG 0.576847 3:-98091376 None:intergenic
ATAGCGAAGACGAAAAGCTT+CGG 0.580873 3:-98087255 None:intergenic
GCAGATGGCTGGCACATGTG+GGG 0.581179 3:+98092789 MsG0380017581.01.T01:intron
GACCTGCTTCTGTAGTTCAC+CGG 0.583896 3:-98088008 None:intergenic
TGGGTGTTTCCACTTCGAGC+GGG 0.584384 3:-98091597 None:intergenic
GCTTAGCTTTACGACGAGTG+TGG 0.588964 3:-98091620 None:intergenic
AATTCCAAGATCCAATTCCT+CGG 0.589768 3:+98087375 MsG0380017581.01.T01:CDS
AAAATGGGCTGAACCTCACG+TGG 0.592865 3:+98089839 MsG0380017581.01.T01:CDS
ACTTGCTCCCCACTTGAACA+AGG 0.596960 3:+98090222 MsG0380017581.01.T01:CDS
AGCCTTTCCAACCTGCTCCT+CGG 0.598082 3:-98087975 None:intergenic
AGCTATTAAGATAATAGGCA+AGG 0.602545 3:-98091385 None:intergenic
TCTGAAGCCCTACACAAAGA+AGG 0.603321 3:+98090428 MsG0380017581.01.T01:CDS
ACTTGTATATTCTCAACATG+AGG 0.604598 3:-98090402 None:intergenic
GCAAGTAAACCCGCTCGAAG+TGG 0.604975 3:+98091588 MsG0380017581.01.T01:CDS
GCTACATATTTATTTGAACG+TGG 0.607894 3:+98092811 MsG0380017581.01.T01:three_prime_UTR
TGAAGTTTACAAGTCCTCAA+AGG 0.607940 3:+98090195 MsG0380017581.01.T01:CDS
GAAGGAGAAAATTAGGGCAA+CGG 0.609746 3:-98087280 None:intergenic
TTGGATGCCGAGGAGCAGGT+TGG 0.613773 3:+98087968 MsG0380017581.01.T01:CDS
AGAGGAATCAGAATCTTCGA+TGG 0.619773 3:-98087325 None:intergenic
AAAAGGGTCATTGGATGCCG+AGG 0.621224 3:+98087958 MsG0380017581.01.T01:CDS
TGATTTGAACTCAAAACTAG+AGG 0.624974 3:+98088195 MsG0380017581.01.T01:CDS
AAACAGTGAGAAAGTGAACT+GGG 0.625922 3:+98088138 MsG0380017581.01.T01:CDS
AATGTTGAAGGCAAAGCTAG+AGG 0.629492 3:+98089076 MsG0380017581.01.T01:CDS
GTGGGTGTTTCCACTTCGAG+CGG 0.630465 3:-98091598 None:intergenic
TTCGATGGAAACATCGACCT+CGG 0.634140 3:-98087310 None:intergenic
CATTGATCAGGTCGCTACTG+CGG 0.635282 3:+98090374 MsG0380017581.01.T01:CDS
TAATTGGATCTTAAGAGCAG+AGG 0.640351 3:-98087343 None:intergenic
AGAAGCAACCTCATTCTGCA+AGG 0.645724 3:-98087762 None:intergenic
TCATGTTGAGAATATACAAG+TGG 0.650587 3:+98090404 MsG0380017581.01.T01:CDS
ATCGACCTCGGAAGTAACGA+AGG 0.651869 3:-98087298 None:intergenic
ATATAGTGTACAGCAAGCCA+AGG 0.657714 3:-98089486 None:intergenic
GGTGTTAATGATCAGACTCA+TGG 0.658662 3:+98089450 MsG0380017581.01.T01:intron
TAGTGTACAGCAAGCCAAGG+AGG 0.659126 3:-98089483 None:intergenic
GCGAAGACGAAAAGCTTCGG+AGG 0.668584 3:-98087252 None:intergenic
GTGGTCTGTGGTGAAAACAA+AGG 0.688492 3:+98090135 MsG0380017581.01.T01:CDS
CAAAGCAAAAGAGCTGAGCG+AGG 0.693194 3:+98089106 MsG0380017581.01.T01:CDS
AACCTGGCGATGATATGCAG+TGG 0.697941 3:-98090484 None:intergenic
ACGTGCTCTTAAAGTCGCCG+AGG 0.698226 3:+98088948 MsG0380017581.01.T01:CDS
TGTGAAAGAACAGTGGTCTG+TGG 0.702105 3:+98090123 MsG0380017581.01.T01:CDS
TTCCAGCTGTGAAAGAACAG+TGG 0.708355 3:+98090116 MsG0380017581.01.T01:CDS
ACTCGTCGTAAAGCTAAGCG+AGG 0.711196 3:+98091624 MsG0380017581.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATATATAAATAAATAGT+AGG - Chr3:98090523-98090542 None:intergenic 10.0%
!!! GAAAAAATAATAATTTTGAA+GGG - Chr3:98087931-98087950 None:intergenic 10.0%
!! AAAAAAAAACAATTCAGTAT+GGG - Chr3:98091467-98091486 None:intergenic 15.0%
!! ACTAAAATATAAATATGGTT+AGG + Chr3:98091311-98091330 MsG0380017581.01.T01:intron 15.0%
!! ATTCAAAAAAATAATACAAG+AGG - Chr3:98090553-98090572 None:intergenic 15.0%
!!! ATATAAGGAATTTTTTTACT+AGG - Chr3:98089327-98089346 None:intergenic 15.0%
!!! CTTAATTTTTTTTCATTAAG+TGG - Chr3:98088763-98088782 None:intergenic 15.0%
!!! GGAAAAAATAATAATTTTGA+AGG - Chr3:98087932-98087951 None:intergenic 15.0%
!!! GTAGATCTAATTTTTTATTT+GGG + Chr3:98091852-98091871 MsG0380017581.01.T01:intron 15.0%
!!! TAGATCTAATTTTTTATTTG+GGG + Chr3:98091853-98091872 MsG0380017581.01.T01:intron 15.0%
!!! TATCAAAACATAATTTTGTT+AGG + Chr3:98088846-98088865 MsG0380017581.01.T01:intron 15.0%
!!! TCTTGTATTATTTTTTTGAA+TGG + Chr3:98090552-98090571 MsG0380017581.01.T01:intron 15.0%
!!! TGTAGATCTAATTTTTTATT+TGG + Chr3:98091851-98091870 MsG0380017581.01.T01:intron 15.0%
!!! TTATTTTATAGTAAACTATC+AGG - Chr3:98089377-98089396 None:intergenic 15.0%
!!! TTCTATTGATATTCTTATTT+AGG + Chr3:98089049-98089068 MsG0380017581.01.T01:intron 15.0%
!! AAAATATAAATATGGTTAGG+TGG + Chr3:98091314-98091333 MsG0380017581.01.T01:intron 20.0%
!! AAATGCTTCAAAAATAATAC+AGG - Chr3:98087853-98087872 None:intergenic 20.0%
!! AAGAAGTTCATAAAAAAACT+TGG - Chr3:98087496-98087515 None:intergenic 20.0%
!! AATAAACATATACTTGAAAG+TGG - Chr3:98093017-98093036 None:intergenic 20.0%
!! AATAAACTGACATTATTAGA+TGG - Chr3:98088827-98088846 None:intergenic 20.0%
!! AATATACTCTTCTAATCAAA+TGG - Chr3:98092406-98092425 None:intergenic 20.0%
!! AGATAAATATGATAGACTTA+CGG - Chr3:98089877-98089896 None:intergenic 20.0%
!! ATAAAATAAACTATCAGACA+AGG + Chr3:98089388-98089407 MsG0380017581.01.T01:intron 20.0%
!! ATATCAAATTGAAATTATGC+AGG + Chr3:98091347-98091366 MsG0380017581.01.T01:intron 20.0%
!! ATTATTAGATGATGTGAATA+AGG - Chr3:98089563-98089582 None:intergenic 20.0%
!! CAACATTTAAAAAGATTACA+TGG - Chr3:98089159-98089178 None:intergenic 20.0%
!! GAAAAAAAAACAATTCAGTA+TGG - Chr3:98091468-98091487 None:intergenic 20.0%
!! TAAAAAGATTACATGGTTTA+GGG - Chr3:98089152-98089171 None:intergenic 20.0%
!! TACCAATATCACATAATATA+AGG - Chr3:98089342-98089361 None:intergenic 20.0%
!! TTAAAAAGATTACATGGTTT+AGG - Chr3:98089153-98089172 None:intergenic 20.0%
!! TTCAAATCATCTAAAAAGAA+AGG + Chr3:98087080-98087099 MsG0380017581.01.T01:five_prime_UTR 20.0%
!! TTCATCTATATACAAGAAAA+TGG - Chr3:98089271-98089290 None:intergenic 20.0%
!! TTCCTTATATTATGTGATAT+TGG + Chr3:98089337-98089356 MsG0380017581.01.T01:intron 20.0%
!! TTTAAACAGAGAAAATGAAA+TGG - Chr3:98092494-98092513 None:intergenic 20.0%
!!! AATATTTTTCTCAAACGTTT+TGG - Chr3:98092434-98092453 None:intergenic 20.0%
!!! AATTATGATAACTGAGATTT+TGG - Chr3:98087408-98087427 None:intergenic 20.0%
!!! AGATTCTATTTTCAATTATC+TGG - Chr3:98090804-98090823 None:intergenic 20.0%
!!! ATAATCATGGATAACTTTTA+AGG - Chr3:98089197-98089216 None:intergenic 20.0%
!!! GTATTATTTTTGAAGCATTT+TGG + Chr3:98087853-98087872 MsG0380017581.01.T01:intron 20.0%
!!! GTTATATTTGTTATTAAACC+TGG + Chr3:98092933-98092952 MsG0380017581.01.T01:three_prime_UTR 20.0%
!!! TAATTTTGTTTCCTTTTTCA+AGG - Chr3:98092532-98092551 None:intergenic 20.0%
!!! TATTATGTGATATTGGTAAT+TGG + Chr3:98089344-98089363 MsG0380017581.01.T01:intron 20.0%
!!! TATTTTTTCCTCAGAAAAAA+GGG + Chr3:98087942-98087961 MsG0380017581.01.T01:intron 20.0%
!!! TTATTTTTTCCTCAGAAAAA+AGG + Chr3:98087941-98087960 MsG0380017581.01.T01:intron 20.0%
!!! TTCATTTTCTCTGTTTAAAT+AGG + Chr3:98092495-98092514 MsG0380017581.01.T01:intron 20.0%
!!! TTGATTAGAAGAGTATATTT+AGG + Chr3:98092407-98092426 MsG0380017581.01.T01:intron 20.0%
!!! TTTTATTAATTGATGCTTAC+TGG + Chr3:98089429-98089448 MsG0380017581.01.T01:intron 20.0%
!!! TTTTTTTTCATTAAGTGGTT+AGG - Chr3:98088758-98088777 None:intergenic 20.0%
! AAAAAATATCAAAGCATGCT+AGG - Chr3:98091747-98091766 None:intergenic 25.0%
! AAAAAGATTACATGGTTTAG+GGG - Chr3:98089151-98089170 None:intergenic 25.0%
! AAAAATATCAAAGCATGCTA+GGG - Chr3:98091746-98091765 None:intergenic 25.0%
! AACACAAGAATTGAAGAAAA+AGG + Chr3:98087682-98087701 MsG0380017581.01.T01:CDS 25.0%
! ACTCTAGCTATTAAGATAAT+AGG - Chr3:98091393-98091412 None:intergenic 25.0%
! ATCGCTGAATAAAAAATTCA+AGG - Chr3:98092043-98092062 None:intergenic 25.0%
! ATTCATGGTTTATTCTTTGT+TGG + Chr3:98093095-98093114 MsG0380017581.01.T01:three_prime_UTR 25.0%
! CAAATACAACTAGAAATATC+AGG - Chr3:98091512-98091531 None:intergenic 25.0%
! CTACATATTTATTTGAACGT+GGG + Chr3:98092812-98092831 MsG0380017581.01.T01:three_prime_UTR 25.0%
! CTTAAATATGCATATTTGAC+CGG + Chr3:98092119-98092138 MsG0380017581.01.T01:intron 25.0%
! CTTCAATAAATTATAGATCC+AGG + Chr3:98089714-98089733 MsG0380017581.01.T01:intron 25.0%
! GAAACTTATACCTGATAATA+AGG - Chr3:98090265-98090284 None:intergenic 25.0%
! GGCTAGTAATTTACAAATTT+AGG + Chr3:98087584-98087603 MsG0380017581.01.T01:intron 25.0%
! TAAATAAAATCACACATTGC+AGG - Chr3:98090747-98090766 None:intergenic 25.0%
! TACATATTTATTTGAACGTG+GGG + Chr3:98092813-98092832 MsG0380017581.01.T01:three_prime_UTR 25.0%
! TATTTAGGAAGAAATGTTGA+AGG + Chr3:98089064-98089083 MsG0380017581.01.T01:intron 25.0%
! TCAATTAGTTGAAATTACTG+AGG + Chr3:98087551-98087570 MsG0380017581.01.T01:intron 25.0%
! TCTTGTATATAGATGAATGA+AGG + Chr3:98089274-98089293 MsG0380017581.01.T01:intron 25.0%
! TTCAAAAACATAGATTTCAG+AGG + Chr3:98092363-98092382 MsG0380017581.01.T01:intron 25.0%
! TTGAAAATAGAATCTTCAGT+TGG + Chr3:98090809-98090828 MsG0380017581.01.T01:intron 25.0%
! TTTAAGCAAATAACAACAAG+TGG - Chr3:98087908-98087927 None:intergenic 25.0%
! TTTGTGAAAATCCTTGAAAA+AGG + Chr3:98092518-98092537 MsG0380017581.01.T01:intron 25.0%
!! AAAAATTCAAAGCATCTAGT+CGG - Chr3:98092337-98092356 None:intergenic 25.0%
!! AATTACTGAGGAAATTTTTG+TGG + Chr3:98087563-98087582 MsG0380017581.01.T01:intron 25.0%
!! ATGAATCTTTTTCTCTAACT+TGG - Chr3:98088176-98088195 None:intergenic 25.0%
!! ATGGTGCTTTTATAGTTAAA+AGG - Chr3:98092475-98092494 None:intergenic 25.0%
!! CTTTCATACTTTTGATCTTT+AGG + Chr3:98089895-98089914 MsG0380017581.01.T01:intron 25.0%
!! GTTTGTTTATGTTTTTCTTG+AGG + Chr3:98090305-98090324 MsG0380017581.01.T01:intron 25.0%
!! TAATCAAATGGAGAAGTATA+GGG - Chr3:98092394-98092413 None:intergenic 25.0%
!! TCTTTTCATGATATGCTTTT+TGG + Chr3:98090954-98090973 MsG0380017581.01.T01:intron 25.0%
!! TGAAGTAAATCTGAGTTTTA+TGG + Chr3:98088259-98088278 MsG0380017581.01.T01:intron 25.0%
!! TGAATATTGCACTTCTTTTT+GGG + Chr3:98092838-98092857 MsG0380017581.01.T01:three_prime_UTR 25.0%
!! TTGAATATTGCACTTCTTTT+TGG + Chr3:98092837-98092856 MsG0380017581.01.T01:three_prime_UTR 25.0%
!!! TCCAAGTTTGTTAAATACTT+GGG + Chr3:98090039-98090058 MsG0380017581.01.T01:intron 25.0%
!!! TTAGGGATTTTTCAATCATT+AGG + Chr3:98087818-98087837 MsG0380017581.01.T01:intron 25.0%
!!! TTTTTGGGTTAGGTAAATTT+AGG + Chr3:98092853-98092872 MsG0380017581.01.T01:three_prime_UTR 25.0%
AAACTTATAGTACAGACAAC+TGG - Chr3:98093058-98093077 None:intergenic 30.0%
AAGTAACGAAGGAGAAAATT+AGG - Chr3:98087290-98087309 None:intergenic 30.0%
ACAACAACAACAAATACAAG+AGG - Chr3:98090698-98090717 None:intergenic 30.0%
ACAAGTAGATAACATGAAGT+TGG + Chr3:98091655-98091674 MsG0380017581.01.T01:exon 30.0%
ACAGGTTCAAAAGATAAATG+AGG + Chr3:98088897-98088916 MsG0380017581.01.T01:intron 30.0%
ACTTGTATATTCTCAACATG+AGG - Chr3:98090405-98090424 None:intergenic 30.0%
AGAAGAAGAAGAATTAAACC+TGG - Chr3:98089735-98089754 None:intergenic 30.0%
AGACAATTCAACACTCAAAA+AGG - Chr3:98091159-98091178 None:intergenic 30.0%
AGCTATTAAGATAATAGGCA+AGG - Chr3:98091388-98091407 None:intergenic 30.0%
AGTAACGAAGGAGAAAATTA+GGG - Chr3:98087289-98087308 None:intergenic 30.0%
AGTTTCTTCATTGAACTGTA+TGG + Chr3:98090279-98090298 MsG0380017581.01.T01:intron 30.0%
ATGTGTAGATCCTTATTATC+AGG + Chr3:98090252-98090271 MsG0380017581.01.T01:CDS 30.0%
ATTGCAACATGATATAGACA+TGG + Chr3:98090979-98090998 MsG0380017581.01.T01:intron 30.0%
CACAAAATGATAAGCAGAAA+GGG - Chr3:98091011-98091030 None:intergenic 30.0%
CAGATAAAAAAAGTTAGCAG+AGG - Chr3:98088607-98088626 None:intergenic 30.0%
CATGTCAATAACATAGCTTA+TGG - Chr3:98091772-98091791 None:intergenic 30.0%
CATTTCTTCAGTTGAAAACA+GGG - Chr3:98090094-98090113 None:intergenic 30.0%
CTTAAAAACTTGTGAAAACC+AGG + Chr3:98092250-98092269 MsG0380017581.01.T01:intron 30.0%
GAATTGTCTTTCGTTATTCA+AGG + Chr3:98091170-98091189 MsG0380017581.01.T01:intron 30.0%
GATTGAAAAATCCCTAAAGA+GGG - Chr3:98087815-98087834 None:intergenic 30.0%
GCTACATATTTATTTGAACG+TGG + Chr3:98092811-98092830 MsG0380017581.01.T01:three_prime_UTR 30.0%
GTGATGTCATAATATCAAGT+TGG - Chr3:98090896-98090915 None:intergenic 30.0%
TAAAGAATTGGAATGGTTTG+CGG + Chr3:98091251-98091270 MsG0380017581.01.T01:CDS 30.0%
TATTAGTTCCAGATCTTGAA+CGG + Chr3:98091092-98091111 MsG0380017581.01.T01:intron 30.0%
TCACAAAATGATAAGCAGAA+AGG - Chr3:98091012-98091031 None:intergenic 30.0%
TCATGTTGAGAATATACAAG+TGG + Chr3:98090404-98090423 MsG0380017581.01.T01:CDS 30.0%
TGAGCGAGGTAATAATTTAT+TGG + Chr3:98089120-98089139 MsG0380017581.01.T01:intron 30.0%
TGATTGAAAAATCCCTAAAG+AGG - Chr3:98087816-98087835 None:intergenic 30.0%
TGATTTGAACTCAAAACTAG+AGG + Chr3:98088195-98088214 MsG0380017581.01.T01:CDS 30.0%
TGTACACTATATTCGTAGTA+AGG + Chr3:98089497-98089516 MsG0380017581.01.T01:CDS 30.0%
TTGACTAGATTTCAGATTGT+GGG - Chr3:98090871-98090890 None:intergenic 30.0%
TTGCTACTAAAGAATTGGAA+TGG + Chr3:98091244-98091263 MsG0380017581.01.T01:CDS 30.0%
TTTGACTAGATTTCAGATTG+TGG - Chr3:98090872-98090891 None:intergenic 30.0%
! AACTTTCACATTGCCTATTT+TGG + Chr3:98088659-98088678 MsG0380017581.01.T01:intron 30.0%
! ACTTTCACATTGCCTATTTT+GGG + Chr3:98088660-98088679 MsG0380017581.01.T01:intron 30.0%
! ATCTAAGACTAACCAGAAAA+TGG - Chr3:98091424-98091443 None:intergenic 30.0%
! CTAATCAAATGGAGAAGTAT+AGG - Chr3:98092395-98092414 None:intergenic 30.0%
! CTGTTTTCAACTGAAGAAAT+GGG + Chr3:98090093-98090112 MsG0380017581.01.T01:intron 30.0%
! TAGTCTGAAATTCTTAATGC+AGG + Chr3:98088084-98088103 MsG0380017581.01.T01:intron 30.0%
! TATTTGGGGAAAACTGTTTT+GGG + Chr3:98091867-98091886 MsG0380017581.01.T01:intron 30.0%
! TCATTTATCTTTTGAACCTG+TGG - Chr3:98088898-98088917 None:intergenic 30.0%
! TCTGCTTATCATTTTGTGAT+GGG + Chr3:98091013-98091032 MsG0380017581.01.T01:intron 30.0%
! TGCATATTTAAGATCACACA+AGG - Chr3:98092111-98092130 None:intergenic 30.0%
! TTATTTGGGGAAAACTGTTT+TGG + Chr3:98091866-98091885 MsG0380017581.01.T01:intron 30.0%
! TTCTGCTTATCATTTTGTGA+TGG + Chr3:98091012-98091031 MsG0380017581.01.T01:intron 30.0%
! TTTGTGAATCGTGATTTTTG+TGG + Chr3:98087617-98087636 MsG0380017581.01.T01:intron 30.0%
!! CATGTTTTCCCTTTTTCATT+TGG + Chr3:98093123-98093142 MsG0380017581.01.T01:three_prime_UTR 30.0%
!! CTCCAAGTTTGTTAAATACT+TGG + Chr3:98090038-98090057 MsG0380017581.01.T01:intron 30.0%
!! TGGAATTGAGTTGATCTAAT+TGG - Chr3:98087362-98087381 None:intergenic 30.0%
!! TTTTCTTTTTTGTTAGTCCG+TGG + Chr3:98089587-98089606 MsG0380017581.01.T01:intron 30.0%
!!! AGTTTTTTTTCTCCTTCATC+CGG + Chr3:98090602-98090621 MsG0380017581.01.T01:intron 30.0%
!!! GGATAACTTTTAAGGTTTTC+TGG - Chr3:98089189-98089208 None:intergenic 30.0%
!!! TAACTTTTAAGGTTTTCTGG+TGG - Chr3:98089186-98089205 None:intergenic 30.0%
!!! TTTTTTTCGGAGAGAAGTTT+AGG + Chr3:98091689-98091708 MsG0380017581.01.T01:three_prime_UTR 30.0%
AAAACAAACCGTTCAAGATC+TGG - Chr3:98091103-98091122 None:intergenic 35.0%
AAAACAGTGAGAAAGTGAAC+TGG + Chr3:98088137-98088156 MsG0380017581.01.T01:CDS 35.0%
AAACAGTGAGAAAGTGAACT+GGG + Chr3:98088138-98088157 MsG0380017581.01.T01:CDS 35.0%
AAATATGCATATTTGACCGG+TGG + Chr3:98092122-98092141 MsG0380017581.01.T01:intron 35.0%
AACATAAAAGAGTGAGTACC+AGG - Chr3:98092954-98092973 None:intergenic 35.0%
AATAGGCAATGTGAAAGTTG+TGG - Chr3:98088658-98088677 None:intergenic 35.0%
AATCATTACACCTGCACATT+TGG - Chr3:98088720-98088739 None:intergenic 35.0%
AATCTTGATACCAAACCCTT+TGG + Chr3:98087120-98087139 MsG0380017581.01.T01:five_prime_UTR 35.0%
AATTCCAAGATCCAATTCCT+CGG + Chr3:98087375-98087394 MsG0380017581.01.T01:CDS 35.0%
ACAACAAATACAAGAGGATC+AGG - Chr3:98090692-98090711 None:intergenic 35.0%
ACACGCACATAAACAAGAAT+AGG - Chr3:98088291-98088310 None:intergenic 35.0%
ACCTCTTGCTACTAAAGAAT+TGG + Chr3:98091239-98091258 MsG0380017581.01.T01:CDS 35.0%
ACGATGAGGAAACATTAGTA+TGG - Chr3:98090918-98090937 None:intergenic 35.0%
ACTAATGTTTCCTCATCGTA+GGG + Chr3:98090919-98090938 MsG0380017581.01.T01:intron 35.0%
AGAACAACCTTCTTTGTGTA+GGG - Chr3:98090438-98090457 None:intergenic 35.0%
AGAGTCATTGGAATGAACAT+GGG + Chr3:98089613-98089632 MsG0380017581.01.T01:intron 35.0%
ATAGGCAATGTGAAAGTTGT+GGG - Chr3:98088657-98088676 None:intergenic 35.0%
ATCAGGAGTAAGTGCATATA+TGG - Chr3:98091495-98091514 None:intergenic 35.0%
CACACTGTTGCTAATAATCA+TGG - Chr3:98089210-98089229 None:intergenic 35.0%
CATAAGCTTATGTCTGGTAT+GGG + Chr3:98091982-98092001 MsG0380017581.01.T01:intron 35.0%
CATGATTATTAGCAACAGTG+TGG + Chr3:98089208-98089227 MsG0380017581.01.T01:intron 35.0%
CCAATGTTGAAACTCCTAAA+TGG - Chr3:98090011-98090030 None:intergenic 35.0%
CCATTTAGGAGTTTCAACAT+TGG + Chr3:98090008-98090027 MsG0380017581.01.T01:intron 35.0%
CCATTTCTTCAGTTGAAAAC+AGG - Chr3:98090095-98090114 None:intergenic 35.0%
CGGGTAAAACAAACAAATTG+TGG - Chr3:98089968-98089987 None:intergenic 35.0%
CTCTCCGAAAAAAATAAACC+AGG - Chr3:98091683-98091702 None:intergenic 35.0%
CTTCATGTTATCTACTTGTC+TGG - Chr3:98091654-98091673 None:intergenic 35.0%
GAATGCTACTCAACTTATCT+TGG - Chr3:98087739-98087758 None:intergenic 35.0%
GACACGTTAATAAAGCAATG+AGG - Chr3:98088491-98088510 None:intergenic 35.0%
GAGACATGTTTCGTAAAAGT+CGG - Chr3:98091943-98091962 None:intergenic 35.0%
GAGTAAGTGCATATATGGAA+AGG - Chr3:98091490-98091509 None:intergenic 35.0%
GCCCAAGTATTTAACAAACT+TGG - Chr3:98090043-98090062 None:intergenic 35.0%
GTAATGCATAAGCTTATGTC+TGG + Chr3:98091976-98091995 MsG0380017581.01.T01:intron 35.0%
GTTGGAAGTGATATCTCAAA+AGG + Chr3:98089644-98089663 MsG0380017581.01.T01:intron 35.0%
GTTTGGGTGTTCATGTATTA+TGG + Chr3:98092908-98092927 MsG0380017581.01.T01:three_prime_UTR 35.0%
TAAATGGTCAACAAGCTATC+AGG - Chr3:98089995-98090014 None:intergenic 35.0%
TAATTGGATCTTAAGAGCAG+AGG - Chr3:98087346-98087365 None:intergenic 35.0%
TACTAATGTTTCCTCATCGT+AGG + Chr3:98090918-98090937 MsG0380017581.01.T01:intron 35.0%
TCCAATTCTTTAGTAGCAAG+AGG - Chr3:98091243-98091262 None:intergenic 35.0%
TCTGGTGTAGATATACAGTA+TGG - Chr3:98090786-98090805 None:intergenic 35.0%
TGAAGTTTACAAGTCCTCAA+AGG + Chr3:98090195-98090214 MsG0380017581.01.T01:CDS 35.0%
TTCCTAAATCGATGTTACTG+TGG + Chr3:98087517-98087536 MsG0380017581.01.T01:intron 35.0%
TTGGGTGCACAATATTGTTT+GGG + Chr3:98092892-98092911 MsG0380017581.01.T01:three_prime_UTR 35.0%
! AATGTGAGAACTGAGAGTAT+TGG + Chr3:98092605-98092624 MsG0380017581.01.T01:intron 35.0%
! CACACAAAGAAACTGATTCA+TGG + Chr3:98093080-98093099 MsG0380017581.01.T01:three_prime_UTR 35.0%
! CCTGTTTTCAACTGAAGAAA+TGG + Chr3:98090092-98090111 MsG0380017581.01.T01:intron 35.0%
! TGCACATTTAAGATCACACA+AGG - Chr3:98091917-98091936 None:intergenic 35.0%
! TTTCTTGAGGTATTCTCAAC+CGG + Chr3:98090318-98090337 MsG0380017581.01.T01:intron 35.0%
! TTTTCACTAGACCCTCTTTA+GGG + Chr3:98087801-98087820 MsG0380017581.01.T01:intron 35.0%
! TTTTCTTGCCAATGTTGTGT+AGG + Chr3:98088995-98089014 MsG0380017581.01.T01:intron 35.0%
!! ATTCTTTTGCCTTGTTCAAG+TGG - Chr3:98090234-98090253 None:intergenic 35.0%
!! TGATAGCTTGTTGACCATTT+AGG + Chr3:98089994-98090013 MsG0380017581.01.T01:intron 35.0%
!! TTCTTTTGCCTTGTTCAAGT+GGG - Chr3:98090233-98090252 None:intergenic 35.0%
!!! ATTGCACTTCTTTTTGGGTT+AGG + Chr3:98092843-98092862 MsG0380017581.01.T01:three_prime_UTR 35.0%
!!! CAATTTGTTTGTTTTACCCG+TGG + Chr3:98089968-98089987 MsG0380017581.01.T01:intron 35.0%
!!! GAGTTTTTTCTGCCATTTTC+TGG + Chr3:98091409-98091428 MsG0380017581.01.T01:CDS 35.0%
!!! GGCTCCTGGTTTATTTTTTT+CGG + Chr3:98091676-98091695 MsG0380017581.01.T01:three_prime_UTR 35.0%
!!! GTTTTTTTTCTCCTTCATCC+GGG + Chr3:98090603-98090622 MsG0380017581.01.T01:intron 35.0%
AAATACAAGAGGATCAGGAG+GGG - Chr3:98090687-98090706 None:intergenic 40.0%
AAATCCACCATCTAACCACA+GGG - Chr3:98089938-98089957 None:intergenic 40.0%
AAGAAGGTTGTTCTCGCTTA+TGG + Chr3:98090444-98090463 MsG0380017581.01.T01:CDS 40.0%
AATGTTGAAGGCAAAGCTAG+AGG + Chr3:98089076-98089095 MsG0380017581.01.T01:CDS 40.0%
ACAAATACAAGAGGATCAGG+AGG - Chr3:98090689-98090708 None:intergenic 40.0%
AGAAAGTGAACTGGGAATCT+CGG + Chr3:98088146-98088165 MsG0380017581.01.T01:CDS 40.0%
AGAAGGTTGTTCTCGCTTAT+GGG + Chr3:98090445-98090464 MsG0380017581.01.T01:CDS 40.0%
AGAGGAATCAGAATCTTCGA+TGG - Chr3:98087328-98087347 None:intergenic 40.0%
AGGAAAGTAAAGTCTGAACC+TGG - Chr3:98090503-98090522 None:intergenic 40.0%
AGTGAGCATCTTATTGGTAG+AGG + Chr3:98092160-98092179 MsG0380017581.01.T01:intron 40.0%
ATAGCGAAGACGAAAAGCTT+CGG - Chr3:98087258-98087277 None:intergenic 40.0%
ATATAGTGTACAGCAAGCCA+AGG - Chr3:98089489-98089508 None:intergenic 40.0%
ATCATTAACTGTCTCCACAG+TGG + Chr3:98092274-98092293 MsG0380017581.01.T01:intron 40.0%
ATGTTATTGACATGCGTGTC+TGG + Chr3:98091778-98091797 MsG0380017581.01.T01:intron 40.0%
ATTCTAGGCCCTAGAGAAAA+AGG + Chr3:98089806-98089825 MsG0380017581.01.T01:intron 40.0%
CAAATACAAGAGGATCAGGA+GGG - Chr3:98090688-98090707 None:intergenic 40.0%
CAATCAACTAAGAGACTGCT+CGG - Chr3:98092575-98092594 None:intergenic 40.0%
CACTTTCTGTATCTTGCAGA+TGG + Chr3:98092774-98092793 MsG0380017581.01.T01:intron 40.0%
CATCTTATTGGTAGAGGGAA+GGG + Chr3:98092166-98092185 MsG0380017581.01.T01:intron 40.0%
CATTCAATCCTTGCAGAATG+AGG + Chr3:98087754-98087773 MsG0380017581.01.T01:CDS 40.0%
CTATCAGACAAGGTGTATTG+TGG + Chr3:98089398-98089417 MsG0380017581.01.T01:intron 40.0%
GAAGGAGAAAATTAGGGCAA+CGG - Chr3:98087283-98087302 None:intergenic 40.0%
GAGAACAACCTTCTTTGTGT+AGG - Chr3:98090439-98090458 None:intergenic 40.0%
GAGAGTCATTGGAATGAACA+TGG + Chr3:98089612-98089631 MsG0380017581.01.T01:intron 40.0%
GAGGATGTAAGTTGTACACT+TGG + Chr3:98088214-98088233 MsG0380017581.01.T01:intron 40.0%
GCATAAGCTTATGTCTGGTA+TGG + Chr3:98091981-98092000 MsG0380017581.01.T01:intron 40.0%
GGTGTAGATATACAGTATGG+AGG - Chr3:98090783-98090802 None:intergenic 40.0%
GGTGTTAATGATCAGACTCA+TGG + Chr3:98089450-98089469 MsG0380017581.01.T01:intron 40.0%
GGTGTTCAATTGAACACCTT+TGG + Chr3:98091888-98091907 MsG0380017581.01.T01:intron 40.0%
GTGAGCATCTTATTGGTAGA+GGG + Chr3:98092161-98092180 MsG0380017581.01.T01:intron 40.0%
GTTGGGTGCACAATATTGTT+TGG + Chr3:98092891-98092910 MsG0380017581.01.T01:three_prime_UTR 40.0%
TAGCAAGCCATACATTGATC+AGG + Chr3:98090362-98090381 MsG0380017581.01.T01:CDS 40.0%
TATCATCTGCAGCAGCAAAA+AGG + Chr3:98091566-98091585 MsG0380017581.01.T01:intron 40.0%
TCATTAACTGTCTCCACAGT+GGG + Chr3:98092275-98092294 MsG0380017581.01.T01:intron 40.0%
TCCTCAGAAAAAAGGGTCAT+TGG + Chr3:98087949-98087968 MsG0380017581.01.T01:intron 40.0%
TCTCGCTTATGGGAATTTCT+TGG + Chr3:98090455-98090474 MsG0380017581.01.T01:CDS 40.0%
TGAGATATCACTTCCAACAG+AGG - Chr3:98089642-98089661 None:intergenic 40.0%
TGCACTGCTCAAAAACCAAA+GGG - Chr3:98087138-98087157 None:intergenic 40.0%
TGCTCAAAAACCAAAGGGTT+TGG - Chr3:98087133-98087152 None:intergenic 40.0%
TGGAGACAGTTAATGATTCC+TGG - Chr3:98092271-98092290 None:intergenic 40.0%
TGTCTGAGTGAGCATCTTAT+TGG + Chr3:98092154-98092173 MsG0380017581.01.T01:intron 40.0%
TTATACATCATGCACACCCT+TGG + Chr3:98092082-98092101 MsG0380017581.01.T01:intron 40.0%
TTGCACTGCTCAAAAACCAA+AGG - Chr3:98087139-98087158 None:intergenic 40.0%
TTGGATTGATACCGAGGAAT+TGG - Chr3:98087389-98087408 None:intergenic 40.0%
! AAAAGGCACAAGCTGGAAAA+TGG + Chr3:98089823-98089842 MsG0380017581.01.T01:CDS 40.0%
! AAAGGCACAAGCTGGAAAAT+GGG + Chr3:98089824-98089843 MsG0380017581.01.T01:CDS 40.0%
! AAGTTGTGGGAGTGTAGTAA+AGG - Chr3:98088644-98088663 None:intergenic 40.0%
! ACGCTTTTCCTATGCATTCT+AGG + Chr3:98089791-98089810 MsG0380017581.01.T01:intron 40.0%
! AGCTTGTGCCTTTTTCTCTA+GGG - Chr3:98089817-98089836 None:intergenic 40.0%
! CTTTTCACTAGACCCTCTTT+AGG + Chr3:98087800-98087819 MsG0380017581.01.T01:intron 40.0%
! GAATGGTTTGCGGTATGTAT+CGG + Chr3:98091261-98091280 MsG0380017581.01.T01:intron 40.0%
! GAGATTTTGGATTGATACCG+AGG - Chr3:98087395-98087414 None:intergenic 40.0%
! TGCGCATTTAAGATCACACA+AGG - Chr3:98092311-98092330 None:intergenic 40.0%
! TTTCTTTTCCCCTCTTGTCT+TGG + Chr3:98088515-98088534 MsG0380017581.01.T01:intron 40.0%
!! CACCACAGTAACATCGATTT+AGG - Chr3:98087522-98087541 None:intergenic 40.0%
!! GTTTTAATCGTTTCCACGTG+AGG - Chr3:98089855-98089874 None:intergenic 40.0%
!! TAAGAGCACGTTCAGTTTTG+CGG - Chr3:98088939-98088958 None:intergenic 40.0%
!! TCTTTTGCCTTGTTCAAGTG+GGG - Chr3:98090232-98090251 None:intergenic 40.0%
!! TTGGTTTTTGAGCAGTGCAA+TGG + Chr3:98087139-98087158 MsG0380017581.01.T01:five_prime_UTR 40.0%
!! TTTTCCGAACGAAGCTTTGT+TGG + Chr3:98087215-98087234 MsG0380017581.01.T01:five_prime_UTR 40.0%
!!! TCCAATGACCCTTTTTTCTG+AGG - Chr3:98087953-98087972 None:intergenic 40.0%
ACCACCATCCTACACAACAT+TGG - Chr3:98089006-98089025 None:intergenic 45.0%
ACTCACAGTCTCACATACCT+CGG - Chr3:98088968-98088987 None:intergenic 45.0%
AGAAACCACCAAGACAAGAG+GGG - Chr3:98088526-98088545 None:intergenic 45.0%
AGAAGCAACCTCATTCTGCA+AGG - Chr3:98087765-98087784 None:intergenic 45.0%
AGATAATAGGCAAGGCCAGA+AGG - Chr3:98091380-98091399 None:intergenic 45.0%
AGCTAGAGTGGAGGAAATTC+AGG + Chr3:98092190-98092209 MsG0380017581.01.T01:intron 45.0%
AGGACGTTTCACTGTAGAGT+TGG + Chr3:98092873-98092892 MsG0380017581.01.T01:three_prime_UTR 45.0%
ATCGTTAACTGTCTCAGCAG+TGG + Chr3:98092214-98092233 MsG0380017581.01.T01:intron 45.0%
ATGATCAGACTCATGGTGCT+TGG + Chr3:98089457-98089476 MsG0380017581.01.T01:intron 45.0%
ATTCCAATGACTCTCAGCCA+CGG - Chr3:98089607-98089626 None:intergenic 45.0%
ATTGACATGCGTGTCTGGTA+TGG + Chr3:98091783-98091802 MsG0380017581.01.T01:intron 45.0%
CAAATCCACCATCTAACCAC+AGG - Chr3:98089939-98089958 None:intergenic 45.0%
CAGAAACCACCAAGACAAGA+GGG - Chr3:98088527-98088546 None:intergenic 45.0%
CCACAGCAATGACCCAAAAT+AGG - Chr3:98088675-98088694 None:intergenic 45.0%
CTTGCCAATGTTGTGTAGGA+TGG + Chr3:98088999-98089018 MsG0380017581.01.T01:intron 45.0%
GAAAGTGAACTGGGAATCTC+GGG + Chr3:98088147-98088166 MsG0380017581.01.T01:CDS 45.0%
GAATGAGGTTGCTTCTCTTC+AGG + Chr3:98087769-98087788 MsG0380017581.01.T01:CDS 45.0%
GATAATAGGCAAGGCCAGAA+GGG - Chr3:98091379-98091398 None:intergenic 45.0%
GATACCGAGGAATTGGATCT+TGG - Chr3:98087382-98087401 None:intergenic 45.0%
GCATCTTATTGGTAGAGGGA+AGG + Chr3:98092165-98092184 MsG0380017581.01.T01:intron 45.0%
GGACGTTTCACTGTAGAGTT+GGG + Chr3:98092874-98092893 MsG0380017581.01.T01:three_prime_UTR 45.0%
GTAGCGACCTGATCAATGTA+TGG - Chr3:98090372-98090391 None:intergenic 45.0%
GTGGTCTGTGGTGAAAACAA+AGG + Chr3:98090135-98090154 MsG0380017581.01.T01:CDS 45.0%
TAATGATTCGTGGCCGCTAT+GGG + Chr3:98088732-98088751 MsG0380017581.01.T01:intron 45.0%
TCAACAAGCTATCAGGACCA+CGG - Chr3:98089988-98090007 None:intergenic 45.0%
TCATCACTAGCCAAATGTGC+AGG + Chr3:98088707-98088726 MsG0380017581.01.T01:intron 45.0%
TCGTTAACTGTCTCAGCAGT+GGG + Chr3:98092215-98092234 MsG0380017581.01.T01:intron 45.0%
TGAGCTAAGGGATAAGGAGT+TGG - Chr3:98090645-98090664 None:intergenic 45.0%
TGGTTTCTGCTGAAAGTTGC+TGG + Chr3:98088538-98088557 MsG0380017581.01.T01:intron 45.0%
TGTGAAAGAACAGTGGTCTG+TGG + Chr3:98090123-98090142 MsG0380017581.01.T01:CDS 45.0%
TGTGCAGGTGTAATGATTCG+TGG + Chr3:98088722-98088741 MsG0380017581.01.T01:intron 45.0%
TTAAGTGGTTAGGCCCATAG+CGG - Chr3:98088748-98088767 None:intergenic 45.0%
TTCCAGCTGTGAAAGAACAG+TGG + Chr3:98090116-98090135 MsG0380017581.01.T01:CDS 45.0%
TTCGATGGAAACATCGACCT+CGG - Chr3:98087313-98087332 None:intergenic 45.0%
TTCTGTATCTTGCAGATGGC+TGG + Chr3:98092778-98092797 MsG0380017581.01.T01:intron 45.0%
TTGACATGCGTGTCTGGTAT+GGG + Chr3:98091784-98091803 MsG0380017581.01.T01:intron 45.0%
TTGAGTAGTGTATGCTCCAC+AGG + Chr3:98088879-98088898 MsG0380017581.01.T01:intron 45.0%
TTTCTCCTTCGTTACTTCCG+AGG + Chr3:98087293-98087312 MsG0380017581.01.T01:CDS 45.0%
! AAGATCACACAAGGCATCCA+AGG - Chr3:98091908-98091927 None:intergenic 45.0%
! AGATCACACAAGGCATCCAA+AGG - Chr3:98091907-98091926 None:intergenic 45.0%
! AGATCACACAAGGCATCCAA+GGG - Chr3:98091907-98091926 None:intergenic 45.0%
! CAGCTTGTGCCTTTTTCTCT+AGG - Chr3:98089818-98089837 None:intergenic 45.0%
! CTAGAGAAAAAGGCACAAGC+TGG + Chr3:98089816-98089835 MsG0380017581.01.T01:CDS 45.0%
! CTGGTTTGAGCTAAGGGATA+AGG - Chr3:98090651-98090670 None:intergenic 45.0%
! GATAACATGAAGTTGGCTCC+TGG + Chr3:98091662-98091681 MsG0380017581.01.T01:exon 45.0%
! TCTGAAGCCCTACACAAAGA+AGG + Chr3:98090428-98090447 MsG0380017581.01.T01:CDS 45.0%
! TGTGGGAGTGTAGTAAAGGT+GGG - Chr3:98088640-98088659 None:intergenic 45.0%
! TTGTGGGAGTGTAGTAAAGG+TGG - Chr3:98088641-98088660 None:intergenic 45.0%
!! AGCTCAACTGGTTTGAGCTA+AGG - Chr3:98090658-98090677 None:intergenic 45.0%
!! CCTATTTTGGGTCATTGCTG+TGG + Chr3:98088672-98088691 MsG0380017581.01.T01:intron 45.0%
!! GCTCAACTGGTTTGAGCTAA+GGG - Chr3:98090657-98090676 None:intergenic 45.0%
!!! CGTGCTTTTTCAACGTCTCT+TGG - Chr3:98091209-98091228 None:intergenic 45.0%
!! TTATTACTAAAATATAAATA+TGG + Chr3:98091306-98091325 MsG0380017581.01.T01:intron 5.0%
!!! ATATTTTAGTAATAATATTT+AGG - Chr3:98091301-98091320 None:intergenic 5.0%
AAAAGGGTCATTGGATGCCG+AGG + Chr3:98087958-98087977 MsG0380017581.01.T01:CDS 50.0%
AACCTGGCGATGATATGCAG+TGG - Chr3:98090487-98090506 None:intergenic 50.0%
ACCGCCAACAAAGCTTCGTT+CGG - Chr3:98087222-98087241 None:intergenic 50.0%
ACGTCTCTTGGACAGTAGCT+TGG - Chr3:98091197-98091216 None:intergenic 50.0%
ACTCGTCGTAAAGCTAAGCG+AGG + Chr3:98091624-98091643 MsG0380017581.01.T01:CDS 50.0%
ACTGCAATTACTGTGCCCTG+TGG + Chr3:98089920-98089939 MsG0380017581.01.T01:intron 50.0%
ACTTGCTCCCCACTTGAACA+AGG + Chr3:98090222-98090241 MsG0380017581.01.T01:CDS 50.0%
AGCTTTACGACGAGTGTGGT+GGG - Chr3:98091619-98091638 None:intergenic 50.0%
ATCGACCTCGGAAGTAACGA+AGG - Chr3:98087301-98087320 None:intergenic 50.0%
CAAAGCAAAAGAGCTGAGCG+AGG + Chr3:98089106-98089125 MsG0380017581.01.T01:CDS 50.0%
CAACAAGCTATCAGGACCAC+GGG - Chr3:98089987-98090006 None:intergenic 50.0%
CAGTGCTTGCACATGAGGTT+CGG - Chr3:98090161-98090180 None:intergenic 50.0%
CATTGATCAGGTCGCTACTG+CGG + Chr3:98090374-98090393 MsG0380017581.01.T01:CDS 50.0%
CTCAATGCTCATGCCTGGAA+GGG + Chr3:98088459-98088478 MsG0380017581.01.T01:intron 50.0%
CTTTCGAGCTTCCTGTCAAC+CGG - Chr3:98090340-98090359 None:intergenic 50.0%
GAAGTCAGTGCTTGCACATG+AGG - Chr3:98090166-98090185 None:intergenic 50.0%
GACCACTGTTCTTTCACAGC+TGG - Chr3:98090121-98090140 None:intergenic 50.0%
GACCTGCTTCTGTAGTTCAC+CGG - Chr3:98088011-98088030 None:intergenic 50.0%
GATAAGGAGTTGGAGGTCCT+GGG - Chr3:98090635-98090654 None:intergenic 50.0%
GCAGAAACCACCAAGACAAG+AGG - Chr3:98088528-98088547 None:intergenic 50.0%
GCATATTTGACCGGTGGCAT+TGG + Chr3:98092128-98092147 MsG0380017581.01.T01:intron 50.0%
GCCAATGTTGTGTAGGATGG+TGG + Chr3:98089002-98089021 MsG0380017581.01.T01:intron 50.0%
GCTAAGGGATAAGGAGTTGG+AGG - Chr3:98090642-98090661 None:intergenic 50.0%
GGTATTCTCAACCGGTTGAC+AGG + Chr3:98090326-98090345 MsG0380017581.01.T01:intron 50.0%
GTAATGATTCGTGGCCGCTA+TGG + Chr3:98088731-98088750 MsG0380017581.01.T01:intron 50.0%
TACTGTGCCCTGTGGTTAGA+TGG + Chr3:98089928-98089947 MsG0380017581.01.T01:intron 50.0%
TAGTGTACAGCAAGCCAAGG+AGG - Chr3:98089486-98089505 None:intergenic 50.0%
TCAGACAATGCCAATGCCAC+CGG - Chr3:98092141-98092160 None:intergenic 50.0%
TGAACATGGGAAGCCTCTGT+TGG + Chr3:98089626-98089645 MsG0380017581.01.T01:intron 50.0%
TGCTGCTGCTGTTGTTAGCA+AGG + Chr3:98090721-98090740 MsG0380017581.01.T01:intron 50.0%
! CTCGCTCAGCTCTTTTGCTT+TGG - Chr3:98089108-98089127 None:intergenic 50.0%
! CTTTTCCCCTCTTGTCTTGG+TGG + Chr3:98088518-98088537 MsG0380017581.01.T01:intron 50.0%
! TAGCTTTACGACGAGTGTGG+TGG - Chr3:98091620-98091639 None:intergenic 50.0%
!! AAAATGGGCTGAACCTCACG+TGG + Chr3:98089839-98089858 MsG0380017581.01.T01:CDS 50.0%
!! AGCTTTGTTGGCGGTGTTGA+TGG + Chr3:98087227-98087246 MsG0380017581.01.T01:exon 50.0%
!! CATGAGCATTGAGCATGGCA+AGG - Chr3:98088452-98088471 None:intergenic 50.0%
!! CTCTAGGGCCTAGAATGCAT+AGG - Chr3:98089802-98089821 None:intergenic 50.0%
!! GCTTAGCTTTACGACGAGTG+TGG - Chr3:98091623-98091642 None:intergenic 50.0%
!! TCCGAACGAAGCTTTGTTGG+CGG + Chr3:98087218-98087237 MsG0380017581.01.T01:five_prime_UTR 50.0%
AATGAGGACGATGCCCTTCC+AGG - Chr3:98088475-98088494 None:intergenic 55.0%
ACAAGAGGATCAGGAGGGGT+TGG - Chr3:98090683-98090702 None:intergenic 55.0%
ACACACAGCTCCCTACGATG+AGG - Chr3:98090932-98090951 None:intergenic 55.0%
ACGTGCTCTTAAAGTCGCCG+AGG + Chr3:98088948-98088967 MsG0380017581.01.T01:CDS 55.0%
ACTGTCTCAGCAGTGGGACT+TGG + Chr3:98092221-98092240 MsG0380017581.01.T01:intron 55.0%
AGAGGGAAGGGTAGCTAGAG+TGG + Chr3:98092178-98092197 MsG0380017581.01.T01:intron 55.0%
AGCCACTGCATATCATCGCC+AGG + Chr3:98090482-98090501 MsG0380017581.01.T01:CDS 55.0%
AGCCTTTCCAACCTGCTCCT+CGG - Chr3:98087978-98087997 None:intergenic 55.0%
AGTCCGTGGCTGAGAGTCAT+TGG + Chr3:98089601-98089620 MsG0380017581.01.T01:intron 55.0%
ATGGTGCTTGGCTTCCTCCT+TGG + Chr3:98089469-98089488 MsG0380017581.01.T01:CDS 55.0%
CAAGAGGATCAGGAGGGGTT+GGG - Chr3:98090682-98090701 None:intergenic 55.0%
CCATGCTCAATGCTCATGCC+TGG + Chr3:98088454-98088473 MsG0380017581.01.T01:intron 55.0%
CTTCATCCGGGTTTCAACCC+AGG + Chr3:98090615-98090634 MsG0380017581.01.T01:intron 55.0%
GCAAGTAAACCCGCTCGAAG+TGG + Chr3:98091588-98091607 MsG0380017581.01.T01:CDS 55.0%
GCGAAGACGAAAAGCTTCGG+AGG - Chr3:98087255-98087274 None:intergenic 55.0%
GCTCAATGCTCATGCCTGGA+AGG + Chr3:98088458-98088477 MsG0380017581.01.T01:intron 55.0%
GGATAAGGAGTTGGAGGTCC+TGG - Chr3:98090636-98090655 None:intergenic 55.0%
GTGGGTGTTTCCACTTCGAG+CGG - Chr3:98091601-98091620 None:intergenic 55.0%
TGCAGATGGCTGGCACATGT+GGG + Chr3:98092788-98092807 MsG0380017581.01.T01:intron 55.0%
TGCCGGTGAACTACAGAAGC+AGG + Chr3:98088006-98088025 MsG0380017581.01.T01:CDS 55.0%
TGGGTGTTTCCACTTCGAGC+GGG - Chr3:98091600-98091619 None:intergenic 55.0%
TGTGCCCTGTGGTTAGATGG+TGG + Chr3:98089931-98089950 MsG0380017581.01.T01:intron 55.0%
TTGCAGATGGCTGGCACATG+TGG + Chr3:98092787-98092806 MsG0380017581.01.T01:intron 55.0%
! CTGGGTTGAAACCCGGATGA+AGG - Chr3:98090617-98090636 None:intergenic 55.0%
!! CCAGGCATGAGCATTGAGCA+TGG - Chr3:98088457-98088476 None:intergenic 55.0%
AGGCATCCTGAGTCCCACTG+TGG - Chr3:98092291-98092310 None:intergenic 60.0%
CTGTCTCCACAGTGGGACTC+AGG + Chr3:98092282-98092301 MsG0380017581.01.T01:intron 60.0%
GAGGGGTTGGGTAGCTCAAC+TGG - Chr3:98090670-98090689 None:intergenic 60.0%
GCAGATGGCTGGCACATGTG+GGG + Chr3:98092789-98092808 MsG0380017581.01.T01:intron 60.0%
GGAAAGGCTCATGCACGTGC+CGG + Chr3:98087989-98088008 MsG0380017581.01.T01:CDS 60.0%
GGGAAGGGTAGCTAGAGTGG+AGG + Chr3:98092181-98092200 MsG0380017581.01.T01:intron 60.0%
GGGAGCAAGTGCGTCCTTTG+AGG - Chr3:98090212-98090231 None:intergenic 60.0%
GTCATTGGATGCCGAGGAGC+AGG + Chr3:98087964-98087983 MsG0380017581.01.T01:CDS 60.0%
TATGCAGGCCTCTGCCCTTC+TGG + Chr3:98091362-98091381 MsG0380017581.01.T01:intron 60.0%
TTGGATGCCGAGGAGCAGGT+TGG + Chr3:98087968-98087987 MsG0380017581.01.T01:CDS 60.0%
! GGAGGTCCTGGGTTGAAACC+CGG - Chr3:98090624-98090643 None:intergenic 60.0%
! TGCCGAGGAGCAGGTTGGAA+AGG + Chr3:98087973-98087992 MsG0380017581.01.T01:CDS 60.0%
AGGCAAGGCCAGAAGGGCAG+AGG - Chr3:98091373-98091392 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98087069 98093146 98087069 ID=MsG0380017581.01;Name=MsG0380017581.01
Chr3 mRNA 98087069 98093146 98087069 ID=MsG0380017581.01.T01;Parent=MsG0380017581.01;Name=MsG0380017581.01.T01;_AED=0.39;_eAED=0.39;_QI=177|0.92|1|1|0.84|0.78|14|402|418
Chr3 exon 98087069 98087396 98087069 ID=MsG0380017581.01.T01:exon:6156;Parent=MsG0380017581.01.T01
Chr3 exon 98087663 98087790 98087663 ID=MsG0380017581.01.T01:exon:6157;Parent=MsG0380017581.01.T01
Chr3 exon 98087956 98088027 98087956 ID=MsG0380017581.01.T01:exon:6158;Parent=MsG0380017581.01.T01
Chr3 exon 98088106 98088219 98088106 ID=MsG0380017581.01.T01:exon:6159;Parent=MsG0380017581.01.T01
Chr3 exon 98088901 98088969 98088901 ID=MsG0380017581.01.T01:exon:6160;Parent=MsG0380017581.01.T01
Chr3 exon 98089071 98089127 98089071 ID=MsG0380017581.01.T01:exon:6161;Parent=MsG0380017581.01.T01
Chr3 exon 98089465 98089518 98089465 ID=MsG0380017581.01.T01:exon:6162;Parent=MsG0380017581.01.T01
Chr3 exon 98089813 98089875 98089813 ID=MsG0380017581.01.T01:exon:6163;Parent=MsG0380017581.01.T01
Chr3 exon 98090109 98090273 98090109 ID=MsG0380017581.01.T01:exon:6164;Parent=MsG0380017581.01.T01
Chr3 exon 98090348 98090503 98090348 ID=MsG0380017581.01.T01:exon:6165;Parent=MsG0380017581.01.T01
Chr3 exon 98091192 98091272 98091192 ID=MsG0380017581.01.T01:exon:6166;Parent=MsG0380017581.01.T01
Chr3 exon 98091369 98091430 98091369 ID=MsG0380017581.01.T01:exon:6167;Parent=MsG0380017581.01.T01
Chr3 exon 98091578 98091710 98091578 ID=MsG0380017581.01.T01:exon:6168;Parent=MsG0380017581.01.T01
Chr3 exon 98092793 98093146 98092793 ID=MsG0380017581.01.T01:exon:6169;Parent=MsG0380017581.01.T01
Chr3 five_prime_UTR 98087069 98087245 98087069 ID=MsG0380017581.01.T01:five_prime_utr;Parent=MsG0380017581.01.T01
Chr3 CDS 98087246 98087396 98087246 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98087663 98087790 98087663 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98087956 98088027 98087956 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98088106 98088219 98088106 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98088901 98088969 98088901 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98089071 98089127 98089071 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98089465 98089518 98089465 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98089813 98089875 98089813 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98090109 98090273 98090109 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98090348 98090503 98090348 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98091192 98091272 98091192 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98091369 98091430 98091369 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 CDS 98091578 98091662 98091578 ID=MsG0380017581.01.T01:cds;Parent=MsG0380017581.01.T01
Chr3 three_prime_UTR 98091663 98091710 98091663 ID=MsG0380017581.01.T01:three_prime_utr;Parent=MsG0380017581.01.T01
Chr3 three_prime_UTR 98092793 98093146 98092793 ID=MsG0380017581.01.T01:three_prime_utr;Parent=MsG0380017581.01.T01
Gene Sequence

>MsG0380017581.01.T01

ATGGCGCCTCCGAAGCTTTTCGTCTTCGCTATTTCCGTTGCCCTAATTTTCTCCTTCGTTACTTCCGAGGTCGATGTTTCCATCGAAGATTCTGATTCCTCTGCTCTTAAGATCCAATTAGATCAACTCAATTCCAAGATCCAATTCCTCGAGTCTCAAATCAGTGAGAAAACACAAGAATTGAAGAAAAAGGATCAAGTAATTGCAGAAAAAGAAAAACTTTTCCAAGATAAGTTGAGTAGCATTCAATCCTTGCAGAATGAGGTTGCTTCTCTTCAGAAAAAAGGGTCATTGGATGCCGAGGAGCAGGTTGGAAAGGCTCATGCACGTGCCGGTGAACTACAGAAGCAGGTTGACAAGCTTAAAAGCGAACTTGAAGCACAAAACAGTGAGAAAGTGAACTGGGAATCTCGGGTAGCCAAGTTAGAGAAAAAGATTCATGATTTGAACTCAAAACTAGAGGATGTTCAAAAGATAAATGAGGAACAAAAGAAACAAATCCGCAAAACTGAACGTGCTCTTAAAGTCGCCGAGGAAGAAATGTTGAAGGCAAAGCTAGAGGCAACTACCAAAGCAAAAGAGCTGAGCGAGACTCATGGTGCTTGGCTTCCTCCTTGGCTTGCTGTACACTATATTCGTAGTAAGGCCCTAGAGAAAAAGGCACAAGCTGGAAAATGGGCTGAACCTCACGTGGAAACGATTAAAACCAAATGGGTTCCAGCTGTGAAAGAACAGTGGTCTGTGGTGAAAACAAAGGCCGAACCTCATGTGCAAGCACTGACTTCAAAGACTGTTGAAGTTTACAAGTCCTCAAAGGACGCACTTGCTCCCCACTTGAACAAGGCAAAAGAATGTGTAGATCCTTATTATCAGGAAGCTCGAAAGTTTAGCAAGCCATACATTGATCAGGTCGCTACTGCGGCTAAGCCTCATGTTGAGAATATACAAGTGGTTCTGAAGCCCTACACAAAGAAGGTTGTTCTCGCTTATGGGAATTTCTTGGAATCAGCCACTGCATATCATCGCCAGGTCCAAGCTACTGTCCAAGAGACGTTGAAAAAGCACGAGCTTACTAGACCTCTTGCTACTAAAGAATTGGAATGGTTTGCGGCCTCTGCCCTTCTGGCCTTGCCTATTATCTTAATAGCTAGAGTTTTTTCTGCCATTTTCTGCAGCAAAAAGGCAAGTAAACCCGCTCGAAGTGGAAACACCCACCACACTCGTCGTAAAGCTAAGCGAGGTCATCCAGACAAGTAG
Protein sequence

>MsG0380017581.01.T01

MAPPKLFVFAISVALIFSFVTSEVDVSIEDSDSSALKIQLDQLNSKIQFLESQISEKTQELKKKDQVIAEKEKLFQDKLSSIQSLQNEVASLQKKGSLDAEEQVGKAHARAGELQKQVDKLKSELEAQNSEKVNWESRVAKLEKKIHDLNSKLEDVQKINEEQKKQIRKTERALKVAEEEMLKAKLEATTKAKELSETHGAWLPPWLAVHYIRSKALEKKAQAGKWAEPHVETIKTKWVPAVKEQWSVVKTKAEPHVQALTSKTVEVYKSSKDALAPHLNKAKECVDPYYQEARKFSKPYIDQVATAAKPHVENIQVVLKPYTKKVVLAYGNFLESATAYHRQVQATVQETLKKHELTRPLATKELEWFAASALLALPIILIARVFSAIFCSKKASKPARSGNTHHTRRKAKRGHPDK*