AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017686.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017686.01.T01 MTR_3g110330 89.706 612 4 2 1 587 1 578 0.0 1098
MsG0380017686.01.T01 MTR_8g102620 76.860 605 81 2 8 587 21 591 0.0 937
MsG0380017686.01.T01 MTR_2g101040 74.917 602 92 2 11 587 108 675 0.0 909
MsG0380017686.01.T01 MTR_8g014390 74.295 603 96 2 10 587 20 588 0.0 907
MsG0380017686.01.T01 MTR_2g101040 71.746 630 91 3 11 587 74 669 0.0 895
MsG0380017686.01.T01 MTR_2g101040 74.831 592 90 2 11 577 74 631 0.0 890
MsG0380017686.01.T01 MTR_2g101040 74.739 574 86 2 11 559 74 613 0.0 857
MsG0380017686.01.T01 MTR_7g076650 38.087 596 287 9 39 583 30 594 4.88e-135 407
MsG0380017686.01.T01 MTR_8g032040 37.770 601 282 10 39 583 33 597 1.10e-133 403
MsG0380017686.01.T01 MTR_8g009500 38.629 598 280 11 42 583 54 620 2.89e-133 403
MsG0380017686.01.T01 MTR_7g076650 35.647 634 288 9 39 583 30 632 8.15e-128 389
MsG0380017686.01.T01 MTR_8g009500 40.494 526 267 10 76 583 29 526 3.64e-127 384
MsG0380017686.01.T01 MTR_7g076650 39.499 519 244 7 39 517 30 518 1.00e-123 375
MsG0380017686.01.T01 MTR_8g009500 38.413 479 219 8 42 475 54 501 1.16e-109 338
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017686.01.T01 AT5G25880 76.529 605 83 2 8 587 18 588 0.0 946
MsG0380017686.01.T01 AT5G11670 75.164 608 92 2 5 587 15 588 0.0 912
MsG0380017686.01.T01 AT2G19900 73.366 612 104 2 1 587 4 581 0.0 899
MsG0380017686.01.T01 AT1G79750 72.968 603 104 2 10 587 78 646 0.0 899
MsG0380017686.01.T01 AT5G25880 76.256 577 78 2 8 559 18 560 0.0 896
MsG0380017686.01.T01 AT2G19900 77.930 512 79 1 76 587 5 482 0.0 807
MsG0380017686.01.T01 AT5G25880 75.105 478 60 2 8 460 18 461 0.0 730
MsG0380017686.01.T01 AT4G00570 38.963 598 276 10 39 583 39 600 4.95e-137 412
MsG0380017686.01.T01 AT2G13560 39.138 603 278 11 38 583 45 615 7.84e-137 412

Find 137 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGTTCCTCCAACTAATTTA+AGG 0.155600 3:-99546379 None:intergenic
AATTACCAATTTCAAAATAT+TGG 0.203264 3:+99548702 MsG0380017686.01.T01:three_prime_UTR
TCATAATGCTTTCGATCTTC+TGG 0.247214 3:+99546181 MsG0380017686.01.T01:CDS
TGTTCAACATAAATCGAAAA+TGG 0.278947 3:-99548770 None:intergenic
TTCTCAATCTGCAGTGTTAT+AGG 0.280415 3:+99548574 MsG0380017686.01.T01:three_prime_UTR
CAGTTGCTCGCTTCTGTCTA+AGG 0.286661 3:-99545864 None:intergenic
GGTGGTGTTAAGGACCTTTA+TGG 0.303206 3:+99544152 MsG0380017686.01.T01:CDS
GACCACACATTCTTATTCTT+AGG 0.314902 3:+99546407 MsG0380017686.01.T01:CDS
CTTTCTCTCTATACTGCATT+AGG 0.318484 3:+99545643 MsG0380017686.01.T01:CDS
CTTGCTTCCCTTAAATTAGT+TGG 0.327881 3:+99546371 MsG0380017686.01.T01:CDS
GTGTTTGGTTTATTATTACT+TGG 0.339443 3:+99544030 MsG0380017686.01.T01:five_prime_UTR
TACTAGAAGTGTGGTATATA+AGG 0.342182 3:+99548627 MsG0380017686.01.T01:three_prime_UTR
CATGCAGTTAAGCAGAACTA+TGG 0.350006 3:+99546039 MsG0380017686.01.T01:CDS
CTTAGACAGAAGCGAGCAAC+TGG 0.354222 3:+99545865 MsG0380017686.01.T01:CDS
ATTTCAAAATATTGGCTTGT+AGG 0.354754 3:+99548710 MsG0380017686.01.T01:three_prime_UTR
TGTCTTCACTCAAGAGCTTC+AGG 0.358072 3:+99544836 MsG0380017686.01.T01:CDS
GTGCCAACATCAATGGTTAT+AGG 0.362681 3:-99545802 None:intergenic
AGTTCCTCCAACTAATTTAA+GGG 0.376258 3:-99546378 None:intergenic
GATCAAACCCAAACCAAATC+CGG 0.382208 3:-99547903 None:intergenic
AGCTCTTGAGATTTCAAAAC+AGG 0.383791 3:+99546745 MsG0380017686.01.T01:CDS
ACTGATGGTGAGCGAATATT+AGG 0.389539 3:+99545443 MsG0380017686.01.T01:CDS
CAACGGTAGCTTCGATAGCC+TGG 0.390240 3:-99548515 None:intergenic
ATTTAAAACAGCTGAAGCTT+TGG 0.390871 3:+99548221 MsG0380017686.01.T01:intron
TTCTTAGTTCTTACTGAAGA+AGG 0.391345 3:-99545676 None:intergenic
TCATATTCAACGGGATCAAA+TGG 0.392063 3:-99547730 None:intergenic
CCTTCACAGGTTCATGCTCA+TGG 0.394386 3:-99547210 None:intergenic
GGTTTATTATTACTTGGCTT+AGG 0.402357 3:+99544036 MsG0380017686.01.T01:five_prime_UTR
ATATTAGGACTAGGCGATCT+TGG 0.402691 3:+99545458 MsG0380017686.01.T01:CDS
CTCAAAGTCGACTGTGGAAC+AGG 0.414186 3:-99548679 None:intergenic
TGAAGAATTTAAAGTTCAAA+TGG 0.418364 3:-99548655 None:intergenic
GGTTTGGGTTTGATCATCTC+TGG 0.424457 3:+99547911 MsG0380017686.01.T01:CDS
TGCACTCAGATTGTGAAGTT+GGG 0.436411 3:-99547558 None:intergenic
ATTGTTTGTGCCAACATCAA+TGG 0.437244 3:-99545809 None:intergenic
TGGTGTTGGTGGTGGTGTTA+AGG 0.439696 3:+99544142 MsG0380017686.01.T01:CDS
GTGCACTCAGATTGTGAAGT+TGG 0.441100 3:-99547559 None:intergenic
TAGAGAGAAAGTTTCCCAAC+AGG 0.441390 3:-99545631 None:intergenic
TCTAGTATTACAATTCTAGA+TGG 0.441641 3:+99546923 MsG0380017686.01.T01:CDS
ACATTCTTATTCTTAGGAGC+TGG 0.443261 3:+99546413 MsG0380017686.01.T01:CDS
TGGCTATTGAAGGCTGGAAC+TGG 0.448999 3:+99546707 MsG0380017686.01.T01:intron
TGACAGGCTTCTCCAACTGT+TGG 0.449408 3:-99545218 None:intergenic
TTTGTGAATGGTGTTGGTGG+TGG 0.450515 3:+99544134 MsG0380017686.01.T01:CDS
AAATTTCCTTCATATTCAAC+GGG 0.451008 3:-99547739 None:intergenic
ATCTCTTTCTTTCTCAGTGA+AGG 0.452812 3:-99544781 None:intergenic
AAGCATTTATAGGCGTCCTC+AGG 0.456871 3:+99545250 MsG0380017686.01.T01:CDS
GATCAAATCATATATTTATG+TGG 0.461270 3:+99548545 MsG0380017686.01.T01:three_prime_UTR
AATATTGGCTTGTAGGAAGA+AGG 0.462722 3:+99548717 MsG0380017686.01.T01:three_prime_UTR
ATCTTTCTGATATTTGTGAA+TGG 0.469748 3:-99548291 None:intergenic
TTTGATCCCGTTGAATATGA+AGG 0.472314 3:+99547733 MsG0380017686.01.T01:CDS
AAAATTTCCTTCATATTCAA+CGG 0.476871 3:-99547740 None:intergenic
CTTCACAGGTTCATGCTCAT+GGG 0.481605 3:-99547209 None:intergenic
GTATGAATGTACCTCATTCA+AGG 0.487503 3:-99547432 None:intergenic
TGAAGACAGCAGGAGGCAAA+AGG 0.489689 3:-99544821 None:intergenic
AAGATCGAAAGCATTATGAT+TGG 0.489691 3:-99546177 None:intergenic
TCACAGGAGAACTATGATAA+GGG 0.491757 3:+99548255 MsG0380017686.01.T01:CDS
TCTTAGTTCTTACTGAAGAA+GGG 0.494272 3:-99545675 None:intergenic
ATCACAGGAGAACTATGATA+AGG 0.496010 3:+99548254 MsG0380017686.01.T01:CDS
CATGGCTTCAACAACCTCCT+TGG 0.497775 3:-99547405 None:intergenic
TTCTGATATTTGTGAATGGA+GGG 0.500345 3:-99548287 None:intergenic
AAACAAAATGTGAGGTTGGT+TGG 0.500860 3:-99543974 None:intergenic
TAGCACTATCCTCACCATAA+AGG 0.502501 3:-99544166 None:intergenic
CAAGTTATTGTTGTGACTGA+TGG 0.504528 3:+99545428 MsG0380017686.01.T01:CDS
AGAGATGCTCATTATGTTCG+TGG 0.504930 3:+99544798 MsG0380017686.01.T01:CDS
CATATTCAACGGGATCAAAT+GGG 0.505094 3:-99547729 None:intergenic
TTTCTGATATTTGTGAATGG+AGG 0.505110 3:-99548288 None:intergenic
GGGTCTGTATATAAGTTTGA+AGG 0.508087 3:+99545271 MsG0380017686.01.T01:CDS
ACTAGGCGATCTTGGTTGCC+AGG 0.509837 3:+99545466 MsG0380017686.01.T01:CDS
ACTGTTGGAGTGTAAACAAC+AGG 0.510690 3:-99545203 None:intergenic
TGCAACACTAGCAGCAATGT+TGG 0.511102 3:-99548319 None:intergenic
CTCAGATTGTGAAGTTGGGT+TGG 0.511133 3:-99547554 None:intergenic
GCATTTAGAAGCTCCTTCAC+AGG 0.511432 3:-99547223 None:intergenic
ACAGCATCTGTGGTATTAGC+AGG 0.511802 3:+99546344 MsG0380017686.01.T01:CDS
GCTTCCCTTAAATTAGTTGG+AGG 0.512303 3:+99546374 MsG0380017686.01.T01:CDS
TTGATTGGATCATCTGGAGT+AGG 0.520374 3:+99547371 MsG0380017686.01.T01:CDS
TATTGAATTAAAACCTGTCC+AGG 0.521440 3:-99547769 None:intergenic
AGGGCATGGGAATTCCTGTT+GGG 0.523574 3:+99545617 MsG0380017686.01.T01:intron
ATGCAGTTAAGCAGAACTAT+GGG 0.523707 3:+99546040 MsG0380017686.01.T01:CDS
ATAAAATAAATCAAATCAGT+TGG 0.524879 3:-99548600 None:intergenic
AGCTCTTGAGTGAAGACAGC+AGG 0.526320 3:-99544831 None:intergenic
TGGGGAGAAAGTTCTTGTAC+AGG 0.528324 3:+99546059 MsG0380017686.01.T01:CDS
CTTATTCTTAGGAGCTGGAG+AGG 0.528375 3:+99546418 MsG0380017686.01.T01:CDS
CATGGAATTTCTCTGTTGCT+AGG 0.532825 3:+99544210 MsG0380017686.01.T01:CDS
TTTACAAGATCCTTTGGTCG+AGG 0.533764 3:-99548467 None:intergenic
CAGCAGAAGAAGCTTATACA+TGG 0.536860 3:+99547581 MsG0380017686.01.T01:CDS
TAGGGCATGGGAATTCCTGT+TGG 0.538702 3:+99545616 MsG0380017686.01.T01:intron
CTGAATGATGAATTCTACAT+TGG 0.540227 3:+99545841 MsG0380017686.01.T01:CDS
TCCAGATGATCCAATCAAAA+CGG 0.543485 3:-99547366 None:intergenic
AACGGTAGCTTCGATAGCCT+GGG 0.544790 3:-99548514 None:intergenic
ATCAAACCCAAACCAAATCC+GGG 0.548446 3:-99547902 None:intergenic
TTTGGCTGCACAAGTATCAC+AGG 0.550062 3:+99548239 MsG0380017686.01.T01:CDS
CGTGCGTGATGAGATGCTCT+TGG 0.552173 3:+99547943 MsG0380017686.01.T01:CDS
TTCTCATTTACCTCGACCAA+AGG 0.555074 3:+99548457 MsG0380017686.01.T01:CDS
GTTGTTTACACTCCAACAGT+TGG 0.556691 3:+99545206 MsG0380017686.01.T01:CDS
AGGAAAACAAAATGTGAGGT+TGG 0.558986 3:-99543978 None:intergenic
GCAGCTAAGACATACGAACT+TGG 0.559765 3:+99548339 MsG0380017686.01.T01:CDS
TACCTCATTCAAGGATGTCA+TGG 0.563172 3:-99547423 None:intergenic
GGTGAGCGAATATTAGGACT+AGG 0.568132 3:+99545449 MsG0380017686.01.T01:CDS
GATCTGGCTTGTGGACTCCA+AGG 0.572426 3:+99546883 MsG0380017686.01.T01:CDS
TTTATTGCTTACTAGAAGTG+TGG 0.576177 3:+99548618 MsG0380017686.01.T01:three_prime_UTR
ATTTACAGGAGAGGAATGAA+AGG 0.576916 3:+99545138 MsG0380017686.01.T01:intron
CGTGTTACTTAGCTTAGACA+TGG 0.578422 3:+99544100 MsG0380017686.01.T01:exon
GGTTCATGCTCATGGGCCCA+AGG 0.579706 3:-99547202 None:intergenic
CCATGAGCATGAACCTGTGA+AGG 0.581900 3:+99547210 MsG0380017686.01.T01:CDS
GAAAGTTGCATGTACAGCCC+AGG 0.582833 3:+99548497 MsG0380017686.01.T01:CDS
GCAAGTCCTTTGTTGTAGCG+TGG 0.583550 3:-99544759 None:intergenic
GATGATCCAATCAAAACGGT+TGG 0.584702 3:-99547362 None:intergenic
ATATTGGCTTGTAGGAAGAA+GGG 0.589745 3:+99548718 MsG0380017686.01.T01:three_prime_UTR
AGAGATCCACGCTACAACAA+AGG 0.591569 3:+99544753 MsG0380017686.01.T01:CDS
AATTCAGGGTACAGCATCTG+TGG 0.592279 3:+99546334 MsG0380017686.01.T01:intron
CTCCTAAGAATAAGAATGTG+TGG 0.596180 3:-99546409 None:intergenic
TCTCTCTATACTGCATTAGG+AGG 0.598664 3:+99545646 MsG0380017686.01.T01:CDS
GGAGCTTCTAAATGCTGTCA+AGG 0.601373 3:+99547231 MsG0380017686.01.T01:CDS
TATTGTGGTTTAGGAATATG+CGG 0.601391 3:+99545996 MsG0380017686.01.T01:intron
AGCATTTATAGGCGTCCTCA+GGG 0.601908 3:+99545251 MsG0380017686.01.T01:CDS
TTGCCTATAACCATTGATGT+TGG 0.615107 3:+99545799 MsG0380017686.01.T01:CDS
TAGCTTAGACATGGCAACTG+AGG 0.615242 3:+99544109 MsG0380017686.01.T01:exon
AAATATGCAGACAGAATGAG+AGG 0.615294 3:-99543998 None:intergenic
TGTTAAGGACCTTTATGGTG+AGG 0.622545 3:+99544157 MsG0380017686.01.T01:CDS
AGCCATGACATCCTTGAATG+AGG 0.627280 3:+99547421 MsG0380017686.01.T01:CDS
CTAGCAACAGAGAAATTCCA+TGG 0.627315 3:-99544209 None:intergenic
AGAAGCTTATACATGGAGCA+AGG 0.633567 3:+99547588 MsG0380017686.01.T01:CDS
TTTCAGAGGCAAAATCCTTG+AGG 0.635790 3:+99545376 MsG0380017686.01.T01:intron
TCTTGAGTGAAGACAGCAGG+AGG 0.639397 3:-99544828 None:intergenic
TGAGAGGAAAACAAAATGTG+AGG 0.640618 3:-99543982 None:intergenic
GTAATTCTCAAAGTCGACTG+TGG 0.643459 3:-99548685 None:intergenic
CATGTCTAAGCTAAGTAACA+CGG 0.645352 3:-99544099 None:intergenic
TTGGAAAGTGCAAGAATGAG+TGG 0.647457 3:-99547535 None:intergenic
ACAATTCTAGATGGAAGTCG+TGG 0.651924 3:+99546932 MsG0380017686.01.T01:CDS
ACAGAAGCGAGCAACTGGGA+AGG 0.653659 3:+99545870 MsG0380017686.01.T01:CDS
TGGTGAGGATAGTGCTACAG+AGG 0.659781 3:+99544172 MsG0380017686.01.T01:CDS
TGATTTGATCAAAATCTCAA+CGG 0.662689 3:-99548532 None:intergenic
AGGATCAACTTATCACACCA+TGG 0.678592 3:+99544192 MsG0380017686.01.T01:CDS
AGGAAAGACATTTACCAAGG+AGG 0.680892 3:+99547391 MsG0380017686.01.T01:CDS
AGAGCATCTCATCACGCACG+CGG 0.683022 3:-99547940 None:intergenic
TTAGACAGAAGCGAGCAACT+GGG 0.694021 3:+99545866 MsG0380017686.01.T01:CDS
TGCAGTTAAGCAGAACTATG+GGG 0.709877 3:+99546041 MsG0380017686.01.T01:CDS
AGTAGGAAAGACATTTACCA+AGG 0.712377 3:+99547388 MsG0380017686.01.T01:CDS
AAACTTATATACAGACCCTG+AGG 0.760636 3:-99545266 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTTATTTACATTCT+TGG + Chr3:99544927-99544946 MsG0380017686.01.T01:intron 10.0%
!! ATATTTGATCAATTAATAAA+CGG + Chr3:99545747-99545766 MsG0380017686.01.T01:intron 10.0%
!! TCATTAAATTATACATAATT+TGG - Chr3:99544580-99544599 None:intergenic 10.0%
!!! CTGTTTTAAATAAAATAAAA+TGG - Chr3:99548212-99548231 None:intergenic 10.0%
!!! TAAATTAAATACTATCTTTT+TGG + Chr3:99546824-99546843 MsG0380017686.01.T01:intron 10.0%
!! AAAAAAGGAATTATAAAATC+AGG - Chr3:99546141-99546160 None:intergenic 15.0%
!! AATTACCAATTTCAAAATAT+TGG + Chr3:99548702-99548721 MsG0380017686.01.T01:three_prime_UTR 15.0%
!! ATAAAATAAATCAAATCAGT+TGG - Chr3:99548603-99548622 None:intergenic 15.0%
!! GTTATTATTATGTTACATTA+TGG - Chr3:99544895-99544914 None:intergenic 15.0%
!! TTATTAATTGATCAAATATG+TGG - Chr3:99545746-99545765 None:intergenic 15.0%
!!! TTTAATGAAAGCATTAATTT+TGG + Chr3:99544592-99544611 MsG0380017686.01.T01:intron 15.0%
!! AAAATAAGAGTCAATAACAT+GGG - Chr3:99546305-99546324 None:intergenic 20.0%
!! AAAATCTTCAAACTGAAAAA+AGG - Chr3:99546156-99546175 None:intergenic 20.0%
!! AAAATTTCCTTCATATTCAA+CGG - Chr3:99547743-99547762 None:intergenic 20.0%
!! AGTCGTTAATTATTATTTCA+TGG + Chr3:99544676-99544695 MsG0380017686.01.T01:intron 20.0%
!! AGTTAATATAAAGGTTTAAC+TGG - Chr3:99545574-99545593 None:intergenic 20.0%
!! ATAAGTTTAATGACAAAAGA+GGG + Chr3:99544501-99544520 MsG0380017686.01.T01:intron 20.0%
!! ATAATATTCGACATCATTAT+CGG - Chr3:99544534-99544553 None:intergenic 20.0%
!! GATCAAATCATATATTTATG+TGG + Chr3:99548545-99548564 MsG0380017686.01.T01:three_prime_UTR 20.0%
!! GGATAATCAAGTTAATATAA+AGG - Chr3:99545583-99545602 None:intergenic 20.0%
!! TATAAGTTTAATGACAAAAG+AGG + Chr3:99544500-99544519 MsG0380017686.01.T01:intron 20.0%
!! TTAATAAACGGTTTACTATT+TGG + Chr3:99545759-99545778 MsG0380017686.01.T01:intron 20.0%
!! TTATCAAATTATTACTAGTG+TGG - Chr3:99546566-99546585 None:intergenic 20.0%
!!! AAAAATATGGAAGCATTTAT+AGG + Chr3:99545240-99545259 MsG0380017686.01.T01:CDS 20.0%
!!! AATTTCTTACTACTATCTTT+TGG + Chr3:99546687-99546706 MsG0380017686.01.T01:intron 20.0%
!!! AGATTTAATGTGTTTGTTAA+TGG + Chr3:99544475-99544494 MsG0380017686.01.T01:intron 20.0%
!!! ATTTTCTTTGGTTTAATTCA+GGG + Chr3:99546320-99546339 MsG0380017686.01.T01:intron 20.0%
!!! CTTTGACATTTTTTATTTAC+AGG + Chr3:99545124-99545143 MsG0380017686.01.T01:intron 20.0%
!!! TATCCTCAATAATTTTGTTA+GGG + Chr3:99545598-99545617 MsG0380017686.01.T01:intron 20.0%
!!! TATTTTCTTTGGTTTAATTC+AGG + Chr3:99546319-99546338 MsG0380017686.01.T01:intron 20.0%
!!! TGAAGAATTTAAAGTTCAAA+TGG - Chr3:99548658-99548677 None:intergenic 20.0%
!!! TTAATTTTGTTACAGTATCA+AGG + Chr3:99548027-99548046 MsG0380017686.01.T01:intron 20.0%
!!! TTATCCTCAATAATTTTGTT+AGG + Chr3:99545597-99545616 MsG0380017686.01.T01:intron 20.0%
!!! TTATTGACTCTTATTTTCTT+TGG + Chr3:99546308-99546327 MsG0380017686.01.T01:intron 20.0%
! AAACAGAGAAGACAAAATTA+AGG - Chr3:99548421-99548440 None:intergenic 25.0%
! AAATTTCCTTCATATTCAAC+GGG - Chr3:99547742-99547761 None:intergenic 25.0%
! AACAACTTACGAACTAATTA+TGG + Chr3:99544294-99544313 MsG0380017686.01.T01:intron 25.0%
! AACATAGTGTTTGTTTATTG+TGG + Chr3:99545981-99546000 MsG0380017686.01.T01:intron 25.0%
! ACAATAAACAAACACTATGT+TGG - Chr3:99545982-99546001 None:intergenic 25.0%
! ATCTTTCTGATATTTGTGAA+TGG - Chr3:99548294-99548313 None:intergenic 25.0%
! ATGGAATCAATTGTGAAATA+TGG - Chr3:99547330-99547349 None:intergenic 25.0%
! ATGTAACTAACTACATATCT+TGG + Chr3:99546600-99546619 MsG0380017686.01.T01:intron 25.0%
! CAATGTAATGTAACGTAATT+AGG - Chr3:99544252-99544271 None:intergenic 25.0%
! CTAAGCTAACAAACAAAATA+GGG - Chr3:99545322-99545341 None:intergenic 25.0%
! GAAAATAAGAGTCAATAACA+TGG - Chr3:99546306-99546325 None:intergenic 25.0%
! GCAAATATCTTATGAGATTA+TGG - Chr3:99547124-99547143 None:intergenic 25.0%
! GTAATTAAATCATCATACCA+TGG + Chr3:99545488-99545507 MsG0380017686.01.T01:intron 25.0%
! TAATATTCGACATCATTATC+GGG - Chr3:99544533-99544552 None:intergenic 25.0%
! TAATGATGTCGAATATTATC+TGG + Chr3:99544535-99544554 MsG0380017686.01.T01:intron 25.0%
! TAATTGATCAAATATGTGGA+AGG - Chr3:99545742-99545761 None:intergenic 25.0%
! TCTAGTATTACAATTCTAGA+TGG + Chr3:99546923-99546942 MsG0380017686.01.T01:CDS 25.0%
! TGATTTGATCAAAATCTCAA+CGG - Chr3:99548535-99548554 None:intergenic 25.0%
! TGTTCAACATAAATCGAAAA+TGG - Chr3:99548773-99548792 None:intergenic 25.0%
!! ATAACTTGAATAGTCTTTTC+TGG - Chr3:99545416-99545435 None:intergenic 25.0%
!! ATATTTTCAAAGCTTGTGTT+TGG + Chr3:99544015-99544034 MsG0380017686.01.T01:five_prime_UTR 25.0%
!! GTGTTTGGTTTATTATTACT+TGG + Chr3:99544030-99544049 MsG0380017686.01.T01:five_prime_UTR 25.0%
!! TGTTTTCAATGATGATATAC+AGG + Chr3:99546226-99546245 MsG0380017686.01.T01:CDS 25.0%
!! TTAAAGTCAGTCACTAATTT+TGG - Chr3:99547833-99547852 None:intergenic 25.0%
!! TTAATTTTGTCTTCTCTGTT+TGG + Chr3:99548420-99548439 MsG0380017686.01.T01:intron 25.0%
!!! AAAGCATTAATTTTGGCTAA+TGG + Chr3:99544599-99544618 MsG0380017686.01.T01:intron 25.0%
!!! AAGTACTTGAATTTTTTCAG+AGG + Chr3:99545362-99545381 MsG0380017686.01.T01:intron 25.0%
!!! ACAAGCCAATATTTTGAAAT+TGG - Chr3:99548710-99548729 None:intergenic 25.0%
!!! ACATTTTTTATTTACAGGAG+AGG + Chr3:99545129-99545148 MsG0380017686.01.T01:intron 25.0%
!!! ATTTCAAAATATTGGCTTGT+AGG + Chr3:99548710-99548729 MsG0380017686.01.T01:three_prime_UTR 25.0%
!!! TAACTAAATTAGTCTTCCTT+AGG - Chr3:99546450-99546469 None:intergenic 25.0%
AAACATCATGGTGCAAAAAA+AGG - Chr3:99545942-99545961 None:intergenic 30.0%
AAGATATTTGCTCTATTGCA+GGG + Chr3:99547133-99547152 MsG0380017686.01.T01:intron 30.0%
AAGCATAAATGCAAAAAGTG+AGG - Chr3:99546485-99546504 None:intergenic 30.0%
AAGTTCCTCCAACTAATTTA+AGG - Chr3:99546382-99546401 None:intergenic 30.0%
ACACATAATAACAACGAAGT+TGG - Chr3:99544953-99544972 None:intergenic 30.0%
ACCACAATAAACAAACATCA+TGG - Chr3:99545954-99545973 None:intergenic 30.0%
ACCATGATGTTTGTTTATTG+TGG + Chr3:99545950-99545969 MsG0380017686.01.T01:intron 30.0%
AGTTCCTCCAACTAATTTAA+GGG - Chr3:99546381-99546400 None:intergenic 30.0%
ATGCCCTAACAAAATTATTG+AGG - Chr3:99545604-99545623 None:intergenic 30.0%
CCTTTATATCCAAGAAAACA+CGG + Chr3:99545542-99545561 MsG0380017686.01.T01:intron 30.0%
CTAATGTTTGTGACATTTCT+TGG + Chr3:99547497-99547516 MsG0380017686.01.T01:intron 30.0%
CTGAATGATGAATTCTACAT+TGG + Chr3:99545841-99545860 MsG0380017686.01.T01:CDS 30.0%
GCTAAGCTAACAAACAAAAT+AGG - Chr3:99545323-99545342 None:intergenic 30.0%
GGTATGATGATTTAATTACC+TGG - Chr3:99545487-99545506 None:intergenic 30.0%
GGTTTATTATTACTTGGCTT+AGG + Chr3:99544036-99544055 MsG0380017686.01.T01:five_prime_UTR 30.0%
GTGTTTGTTTATTGTGGTTT+AGG + Chr3:99545987-99546006 MsG0380017686.01.T01:intron 30.0%
TAAGATATTTGCTCTATTGC+AGG + Chr3:99547132-99547151 MsG0380017686.01.T01:intron 30.0%
TAATAATGACTGTGTTACAG+TGG + Chr3:99544717-99544736 MsG0380017686.01.T01:intron 30.0%
TAATTCCGATCAAAGATGAA+GGG + Chr3:99547082-99547101 MsG0380017686.01.T01:intron 30.0%
TATTGAATTAAAACCTGTCC+AGG - Chr3:99547772-99547791 None:intergenic 30.0%
TATTGTGGTTTAGGAATATG+CGG + Chr3:99545996-99546015 MsG0380017686.01.T01:intron 30.0%
TCAATGATGATATACAGGTA+AGG + Chr3:99546231-99546250 MsG0380017686.01.T01:intron 30.0%
TCTTTGTACAATGTGCAATT+TGG + Chr3:99544356-99544375 MsG0380017686.01.T01:intron 30.0%
TGAACAATTCATCTGTTTCA+TGG + Chr3:99544445-99544464 MsG0380017686.01.T01:intron 30.0%
TGAATTGAACACATTTAGCA+TGG - Chr3:99548372-99548391 None:intergenic 30.0%
TTCTGATATTTGTGAATGGA+GGG - Chr3:99548290-99548309 None:intergenic 30.0%
TTTATTGCTTACTAGAAGTG+TGG + Chr3:99548618-99548637 MsG0380017686.01.T01:three_prime_UTR 30.0%
TTTCTGATATTTGTGAATGG+AGG - Chr3:99548291-99548310 None:intergenic 30.0%
! AACAATGCTTACATTTTTCC+CGG + Chr3:99547884-99547903 MsG0380017686.01.T01:CDS 30.0%
! AATTGTGTGTTGTTAAGACA+TGG + Chr3:99548168-99548187 MsG0380017686.01.T01:intron 30.0%
! ATGATTTTCGTGCATCATTA+TGG + Chr3:99544638-99544657 MsG0380017686.01.T01:intron 30.0%
! ATTTAAAACAGCTGAAGCTT+TGG + Chr3:99548221-99548240 MsG0380017686.01.T01:intron 30.0%
! ATTTCACAATTGATTCCATC+AGG + Chr3:99547331-99547350 MsG0380017686.01.T01:intron 30.0%
! ATTTTGTCTCTTCTATTTGC+AGG + Chr3:99547681-99547700 MsG0380017686.01.T01:intron 30.0%
! CAATAATTTTGTTAGGGCAT+GGG + Chr3:99545604-99545623 MsG0380017686.01.T01:intron 30.0%
! TACTAGAAGTGTGGTATATA+AGG + Chr3:99548627-99548646 MsG0380017686.01.T01:three_prime_UTR 30.0%
! TCAATAATTTTGTTAGGGCA+TGG + Chr3:99545603-99545622 MsG0380017686.01.T01:intron 30.0%
! TCTTAGTTCTTACTGAAGAA+GGG - Chr3:99545678-99545697 None:intergenic 30.0%
! TTCTTAGTTCTTACTGAAGA+AGG - Chr3:99545679-99545698 None:intergenic 30.0%
! TTTTGTCTCTTCTATTTGCA+GGG + Chr3:99547682-99547701 MsG0380017686.01.T01:intron 30.0%
!! AAGATCGAAAGCATTATGAT+TGG - Chr3:99546180-99546199 None:intergenic 30.0%
!! AATGCTTCCATATTTTTGAC+AGG - Chr3:99545237-99545256 None:intergenic 30.0%
!! CGTTGTTATTATGTGTTTTC+AGG + Chr3:99544957-99544976 MsG0380017686.01.T01:intron 30.0%
!! TACTATCTTTTGGCTATTGA+AGG + Chr3:99546697-99546716 MsG0380017686.01.T01:intron 30.0%
!! TTATGTGTTTTCAGGAAAAG+AGG + Chr3:99544965-99544984 MsG0380017686.01.T01:intron 30.0%
!!! AAATTTTTTTGTTCCTGGAC+AGG + Chr3:99547756-99547775 MsG0380017686.01.T01:CDS 30.0%
!!! GAAGGAAATTTTTTTGTTCC+TGG + Chr3:99547751-99547770 MsG0380017686.01.T01:CDS 30.0%
AAACTTATATACAGACCCTG+AGG - Chr3:99545269-99545288 None:intergenic 35.0%
AAATATGCAGACAGAATGAG+AGG - Chr3:99544001-99544020 None:intergenic 35.0%
AATGCTATGTACTTGTGAAG+AGG - Chr3:99545021-99545040 None:intergenic 35.0%
ACATTCTTATTCTTAGGAGC+TGG + Chr3:99546413-99546432 MsG0380017686.01.T01:CDS 35.0%
AGCTCTTGAGATTTCAAAAC+AGG + Chr3:99546745-99546764 MsG0380017686.01.T01:CDS 35.0%
AGGAAAACAAAATGTGAGGT+TGG - Chr3:99543981-99544000 None:intergenic 35.0%
AGTAGGAAAGACATTTACCA+AGG + Chr3:99547388-99547407 MsG0380017686.01.T01:CDS 35.0%
ATCACAGGAGAACTATGATA+AGG + Chr3:99548254-99548273 MsG0380017686.01.T01:CDS 35.0%
ATCTCTTTCTTTCTCAGTGA+AGG - Chr3:99544784-99544803 None:intergenic 35.0%
ATGCAGTTAAGCAGAACTAT+GGG + Chr3:99546040-99546059 MsG0380017686.01.T01:CDS 35.0%
ATGTCAAAGACAGTGAGAAA+AGG - Chr3:99545113-99545132 None:intergenic 35.0%
ATTGTTTGTGCCAACATCAA+TGG - Chr3:99545812-99545831 None:intergenic 35.0%
ATTTACAGGAGAGGAATGAA+AGG + Chr3:99545138-99545157 MsG0380017686.01.T01:intron 35.0%
CAAGTTATTGTTGTGACTGA+TGG + Chr3:99545428-99545447 MsG0380017686.01.T01:CDS 35.0%
CATATTCAACGGGATCAAAT+GGG - Chr3:99547732-99547751 None:intergenic 35.0%
CATGTCTAAGCTAAGTAACA+CGG - Chr3:99544102-99544121 None:intergenic 35.0%
CTCCTAAGAATAAGAATGTG+TGG - Chr3:99546412-99546431 None:intergenic 35.0%
CTTGCTTCCCTTAAATTAGT+TGG + Chr3:99546371-99546390 MsG0380017686.01.T01:CDS 35.0%
CTTTCTCTCTATACTGCATT+AGG + Chr3:99545643-99545662 MsG0380017686.01.T01:CDS 35.0%
GACCACACATTCTTATTCTT+AGG + Chr3:99546407-99546426 MsG0380017686.01.T01:CDS 35.0%
GGGTCTGTATATAAGTTTGA+AGG + Chr3:99545271-99545290 MsG0380017686.01.T01:CDS 35.0%
GTAATTCCGATCAAAGATGA+AGG + Chr3:99547081-99547100 MsG0380017686.01.T01:intron 35.0%
GTATGAATGTACCTCATTCA+AGG - Chr3:99547435-99547454 None:intergenic 35.0%
TAACTACATATCTTGGACAC+TGG + Chr3:99546607-99546626 MsG0380017686.01.T01:intron 35.0%
TCAACACTTCAAAAAGCCTT+GGG + Chr3:99547186-99547205 MsG0380017686.01.T01:CDS 35.0%
TCACAGGAGAACTATGATAA+GGG + Chr3:99548255-99548274 MsG0380017686.01.T01:CDS 35.0%
TCATAATGCTTTCGATCTTC+TGG + Chr3:99546181-99546200 MsG0380017686.01.T01:CDS 35.0%
TCATATTCAACGGGATCAAA+TGG - Chr3:99547733-99547752 None:intergenic 35.0%
TCCAGATGATCCAATCAAAA+CGG - Chr3:99547369-99547388 None:intergenic 35.0%
TGAGAGGAAAACAAAATGTG+AGG - Chr3:99543985-99544004 None:intergenic 35.0%
TGGATGTGTTAGTATCAGTA+TGG - Chr3:99546546-99546565 None:intergenic 35.0%
TTCAACACTTCAAAAAGCCT+TGG + Chr3:99547185-99547204 MsG0380017686.01.T01:CDS 35.0%
TTCAACATCTTCAGTGTCTT+TGG + Chr3:99546094-99546113 MsG0380017686.01.T01:intron 35.0%
TTCTCAATCTGCAGTGTTAT+AGG + Chr3:99548574-99548593 MsG0380017686.01.T01:three_prime_UTR 35.0%
TTGCCTATAACCATTGATGT+TGG + Chr3:99545799-99545818 MsG0380017686.01.T01:CDS 35.0%
TTTGATCCCGTTGAATATGA+AGG + Chr3:99547733-99547752 MsG0380017686.01.T01:CDS 35.0%
! CAGTTCAAGCATTTTTACCT+TGG - Chr3:99546903-99546922 None:intergenic 35.0%
! CCGTGTTTTCTTGGATATAA+AGG - Chr3:99545545-99545564 None:intergenic 35.0%
! GCGTATTTTACAAGATCCTT+TGG - Chr3:99548476-99548495 None:intergenic 35.0%
! GGGAAAAATGTAAGCATTGT+TGG - Chr3:99547885-99547904 None:intergenic 35.0%
! GTTTTGCTGCAATGCAATTT+AGG + Chr3:99547859-99547878 MsG0380017686.01.T01:intron 35.0%
! TCACAAGTACATAGCATTGA+TGG + Chr3:99545023-99545042 MsG0380017686.01.T01:intron 35.0%
!! AATATTGGCTTGTAGGAAGA+AGG + Chr3:99548717-99548736 MsG0380017686.01.T01:three_prime_UTR 35.0%
!! ATATTGGCTTGTAGGAAGAA+GGG + Chr3:99548718-99548737 MsG0380017686.01.T01:three_prime_UTR 35.0%
!! ATTTTTCCCGGATTTGGTTT+GGG + Chr3:99547896-99547915 MsG0380017686.01.T01:CDS 35.0%
!!! AAGGCTTTTTGAAGTGTTGA+AGG - Chr3:99547186-99547205 None:intergenic 35.0%
!!! AGGCTTTTTGAAGTGTTGAA+GGG - Chr3:99547185-99547204 None:intergenic 35.0%
!!! GCATCTGTAGTTTTAAACCA+TGG - Chr3:99545508-99545527 None:intergenic 35.0%
AAGAGACTCGCAAAAAGATC+TGG + Chr3:99546867-99546886 MsG0380017686.01.T01:CDS 40.0%
ACAATTCTAGATGGAAGTCG+TGG + Chr3:99546932-99546951 MsG0380017686.01.T01:CDS 40.0%
ACTGTTGGAGTGTAAACAAC+AGG - Chr3:99545206-99545225 None:intergenic 40.0%
AGAAGCTTATACATGGAGCA+AGG + Chr3:99547588-99547607 MsG0380017686.01.T01:CDS 40.0%
AGAGATGCTCATTATGTTCG+TGG + Chr3:99544798-99544817 MsG0380017686.01.T01:CDS 40.0%
AGGAAAGACATTTACCAAGG+AGG + Chr3:99547391-99547410 MsG0380017686.01.T01:CDS 40.0%
AGGATCAACTTATCACACCA+TGG + Chr3:99544192-99544211 MsG0380017686.01.T01:CDS 40.0%
ATATTAGGACTAGGCGATCT+TGG + Chr3:99545458-99545477 MsG0380017686.01.T01:CDS 40.0%
ATCAAACCCAAACCAAATCC+GGG - Chr3:99547905-99547924 None:intergenic 40.0%
ATCAAATATGTGGAAGGCGA+AGG - Chr3:99545736-99545755 None:intergenic 40.0%
CAGCAGAAGAAGCTTATACA+TGG + Chr3:99547581-99547600 MsG0380017686.01.T01:CDS 40.0%
CATGCAGTTAAGCAGAACTA+TGG + Chr3:99546039-99546058 MsG0380017686.01.T01:CDS 40.0%
CATGGAATTTCTCTGTTGCT+AGG + Chr3:99544210-99544229 MsG0380017686.01.T01:CDS 40.0%
CTAGCAACAGAGAAATTCCA+TGG - Chr3:99544212-99544231 None:intergenic 40.0%
GATCAAACCCAAACCAAATC+CGG - Chr3:99547906-99547925 None:intergenic 40.0%
GATGATCCAATCAAAACGGT+TGG - Chr3:99547365-99547384 None:intergenic 40.0%
GCTTCCCTTAAATTAGTTGG+AGG + Chr3:99546374-99546393 MsG0380017686.01.T01:CDS 40.0%
GGAGAAGCCTGTCAAAAATA+TGG + Chr3:99545227-99545246 MsG0380017686.01.T01:CDS 40.0%
GTAATTCTCAAAGTCGACTG+TGG - Chr3:99548688-99548707 None:intergenic 40.0%
GTGCCAACATCAATGGTTAT+AGG - Chr3:99545805-99545824 None:intergenic 40.0%
GTTAGTATCAGTATGGTGTC+CGG - Chr3:99546539-99546558 None:intergenic 40.0%
GTTGTTTACACTCCAACAGT+TGG + Chr3:99545206-99545225 MsG0380017686.01.T01:CDS 40.0%
TACCTCATTCAAGGATGTCA+TGG - Chr3:99547426-99547445 None:intergenic 40.0%
TAGAGAGAAAGTTTCCCAAC+AGG - Chr3:99545634-99545653 None:intergenic 40.0%
TAGCACTATCCTCACCATAA+AGG - Chr3:99544169-99544188 None:intergenic 40.0%
TCGACATCATTATCGGGATT+CGG - Chr3:99544527-99544546 None:intergenic 40.0%
TCTCTCTATACTGCATTAGG+AGG + Chr3:99545646-99545665 MsG0380017686.01.T01:CDS 40.0%
TGCACTCAGATTGTGAAGTT+GGG - Chr3:99547561-99547580 None:intergenic 40.0%
TGCAGTTAAGCAGAACTATG+GGG + Chr3:99546041-99546060 MsG0380017686.01.T01:CDS 40.0%
TGTGAAGAGGAACATCATAC+TGG - Chr3:99545008-99545027 None:intergenic 40.0%
TGTTAAGGACCTTTATGGTG+AGG + Chr3:99544157-99544176 MsG0380017686.01.T01:CDS 40.0%
TTCTCATTTACCTCGACCAA+AGG + Chr3:99548457-99548476 MsG0380017686.01.T01:CDS 40.0%
TTGTGCCCTTCATCTTTGAT+CGG - Chr3:99547090-99547109 None:intergenic 40.0%
TTTACAAGATCCTTTGGTCG+AGG - Chr3:99548470-99548489 None:intergenic 40.0%
TTTCAGAGGCAAAATCCTTG+AGG + Chr3:99545376-99545395 MsG0380017686.01.T01:intron 40.0%
! ACTGATGGTGAGCGAATATT+AGG + Chr3:99545443-99545462 MsG0380017686.01.T01:CDS 40.0%
! GAGGATTTTGTGAATGGTGT+TGG + Chr3:99544128-99544147 MsG0380017686.01.T01:CDS 40.0%
! GCAACTGAGGATTTTGTGAA+TGG + Chr3:99544122-99544141 MsG0380017686.01.T01:CDS 40.0%
! GCTTACATTTTTCCCGGATT+TGG + Chr3:99547890-99547909 MsG0380017686.01.T01:CDS 40.0%
! GGTAAAGCAATTTTCGCTAG+TGG + Chr3:99547703-99547722 MsG0380017686.01.T01:CDS 40.0%
! TCCTTGAGGTGCTTAAAAAC+TGG + Chr3:99545390-99545409 MsG0380017686.01.T01:CDS 40.0%
! TGGATTTTGCCGTGTTTTCT+TGG - Chr3:99545554-99545573 None:intergenic 40.0%
! TTGATTGGATCATCTGGAGT+AGG + Chr3:99547371-99547390 MsG0380017686.01.T01:CDS 40.0%
! TTGGAAAGTGCAAGAATGAG+TGG - Chr3:99547538-99547557 None:intergenic 40.0%
! TTTTTGCGAGTCTCTTCAAC+CGG - Chr3:99546863-99546882 None:intergenic 40.0%
!! ATCAAGCCAACCGTTTTGAT+TGG + Chr3:99547356-99547375 MsG0380017686.01.T01:CDS 40.0%
!! ATCTTTTGGCTATTGAAGGC+TGG + Chr3:99546701-99546720 MsG0380017686.01.T01:intron 40.0%
!! CATAGCATTGATGGATCTTC+AGG + Chr3:99545032-99545051 MsG0380017686.01.T01:intron 40.0%
!! CATTTTTCCCGGATTTGGTT+TGG + Chr3:99547895-99547914 MsG0380017686.01.T01:CDS 40.0%
!! CGTGTTACTTAGCTTAGACA+TGG + Chr3:99544100-99544119 MsG0380017686.01.T01:exon 40.0%
!! GATTTTGTGAATGGTGTTGG+TGG + Chr3:99544131-99544150 MsG0380017686.01.T01:CDS 40.0%
!! TTTTGGCTAGACAAAAGCTC+CGG + Chr3:99546841-99546860 MsG0380017686.01.T01:intron 40.0%
!!! ACCGTTTTGATTGGATCATC+TGG + Chr3:99547365-99547384 MsG0380017686.01.T01:CDS 40.0%
AACACAGACACATACACCAC+CGG + Chr3:99546517-99546536 MsG0380017686.01.T01:intron 45.0%
AAGCATTTATAGGCGTCCTC+AGG + Chr3:99545250-99545269 MsG0380017686.01.T01:CDS 45.0%
AATTCAGGGTACAGCATCTG+TGG + Chr3:99546334-99546353 MsG0380017686.01.T01:intron 45.0%
ACAGCATCTGTGGTATTAGC+AGG + Chr3:99546344-99546363 MsG0380017686.01.T01:CDS 45.0%
AGAGATCCACGCTACAACAA+AGG + Chr3:99544753-99544772 MsG0380017686.01.T01:CDS 45.0%
AGCATTTATAGGCGTCCTCA+GGG + Chr3:99545251-99545270 MsG0380017686.01.T01:CDS 45.0%
AGCCATGACATCCTTGAATG+AGG + Chr3:99547421-99547440 MsG0380017686.01.T01:CDS 45.0%
CTCAGATTGTGAAGTTGGGT+TGG - Chr3:99547557-99547576 None:intergenic 45.0%
CTTATTCTTAGGAGCTGGAG+AGG + Chr3:99546418-99546437 MsG0380017686.01.T01:CDS 45.0%
CTTCACAGGTTCATGCTCAT+GGG - Chr3:99547212-99547231 None:intergenic 45.0%
GCAGCTAAGACATACGAACT+TGG + Chr3:99548339-99548358 MsG0380017686.01.T01:CDS 45.0%
GCATTTAGAAGCTCCTTCAC+AGG - Chr3:99547226-99547245 None:intergenic 45.0%
GGAGCTTCTAAATGCTGTCA+AGG + Chr3:99547231-99547250 MsG0380017686.01.T01:CDS 45.0%
GGTGAGCGAATATTAGGACT+AGG + Chr3:99545449-99545468 MsG0380017686.01.T01:CDS 45.0%
GTGCACTCAGATTGTGAAGT+TGG - Chr3:99547562-99547581 None:intergenic 45.0%
TAGCTTAGACATGGCAACTG+AGG + Chr3:99544109-99544128 MsG0380017686.01.T01:exon 45.0%
TGCAACACTAGCAGCAATGT+TGG - Chr3:99548322-99548341 None:intergenic 45.0%
TGGGGAGAAAGTTCTTGTAC+AGG + Chr3:99546059-99546078 MsG0380017686.01.T01:CDS 45.0%
TGTCTTCACTCAAGAGCTTC+AGG + Chr3:99544836-99544855 MsG0380017686.01.T01:CDS 45.0%
TTAGACAGAAGCGAGCAACT+GGG + Chr3:99545866-99545885 MsG0380017686.01.T01:CDS 45.0%
TTGCATGTCAGTGAGTGTGA+AGG - Chr3:99545905-99545924 None:intergenic 45.0%
TTTGGCTGCACAAGTATCAC+AGG + Chr3:99548239-99548258 MsG0380017686.01.T01:CDS 45.0%
! GGTGGTGTTAAGGACCTTTA+TGG + Chr3:99544152-99544171 MsG0380017686.01.T01:CDS 45.0%
! GGTTTGGGTTTGATCATCTC+TGG + Chr3:99547911-99547930 MsG0380017686.01.T01:CDS 45.0%
! TCGCAAAAAGATCTGGCTTG+TGG + Chr3:99546874-99546893 MsG0380017686.01.T01:CDS 45.0%
!! GCCAGTTTTTAAGCACCTCA+AGG - Chr3:99545394-99545413 None:intergenic 45.0%
!! GTCTTCTCTGTTTGGTGTAC+AGG + Chr3:99548428-99548447 MsG0380017686.01.T01:intron 45.0%
!! TTTGTGAATGGTGTTGGTGG+TGG + Chr3:99544134-99544153 MsG0380017686.01.T01:CDS 45.0%
AACGGTAGCTTCGATAGCCT+GGG - Chr3:99548517-99548536 None:intergenic 50.0%
AGCTCTTGAGTGAAGACAGC+AGG - Chr3:99544834-99544853 None:intergenic 50.0%
AGGGCATGGGAATTCCTGTT+GGG + Chr3:99545617-99545636 MsG0380017686.01.T01:intron 50.0%
AGTATCAGTATGGTGTCCGG+TGG - Chr3:99546536-99546555 None:intergenic 50.0%
CAGTTGCTCGCTTCTGTCTA+AGG - Chr3:99545867-99545886 None:intergenic 50.0%
CATGGCTTCAACAACCTCCT+TGG - Chr3:99547408-99547427 None:intergenic 50.0%
CCATGAGCATGAACCTGTGA+AGG + Chr3:99547210-99547229 MsG0380017686.01.T01:CDS 50.0%
CCTTCACAGGTTCATGCTCA+TGG - Chr3:99547213-99547232 None:intergenic 50.0%
CTCAAAGTCGACTGTGGAAC+AGG - Chr3:99548682-99548701 None:intergenic 50.0%
CTTAGACAGAAGCGAGCAAC+TGG + Chr3:99545865-99545884 MsG0380017686.01.T01:CDS 50.0%
GAAAGTTGCATGTACAGCCC+AGG + Chr3:99548497-99548516 MsG0380017686.01.T01:CDS 50.0%
GCTGGAGAGGTAAGTTCCTA+AGG + Chr3:99546431-99546450 MsG0380017686.01.T01:intron 50.0%
TAGGGCATGGGAATTCCTGT+TGG + Chr3:99545616-99545635 MsG0380017686.01.T01:intron 50.0%
TCTTGAGTGAAGACAGCAGG+AGG - Chr3:99544831-99544850 None:intergenic 50.0%
TGAAGACAGCAGGAGGCAAA+AGG - Chr3:99544824-99544843 None:intergenic 50.0%
TGACAGGCTTCTCCAACTGT+TGG - Chr3:99545221-99545240 None:intergenic 50.0%
TGGCTATTGAAGGCTGGAAC+TGG + Chr3:99546707-99546726 MsG0380017686.01.T01:intron 50.0%
TGGTGAGGATAGTGCTACAG+AGG + Chr3:99544172-99544191 MsG0380017686.01.T01:CDS 50.0%
! AGGCGAAGGCATAGGGAAAA+AGG - Chr3:99545722-99545741 None:intergenic 50.0%
! ATGTGGAAGGCGAAGGCATA+GGG - Chr3:99545729-99545748 None:intergenic 50.0%
! GCAAGTCCTTTGTTGTAGCG+TGG - Chr3:99544762-99544781 None:intergenic 50.0%
! TATGTGGAAGGCGAAGGCAT+AGG - Chr3:99545730-99545749 None:intergenic 50.0%
!! CTCTGTTTGGTGTACAGGTC+TGG + Chr3:99548433-99548452 MsG0380017686.01.T01:intron 50.0%
!! TGGTGTTGGTGGTGGTGTTA+AGG + Chr3:99544142-99544161 MsG0380017686.01.T01:CDS 50.0%
ACAGAAGCGAGCAACTGGGA+AGG + Chr3:99545870-99545889 MsG0380017686.01.T01:CDS 55.0%
ACTAGGCGATCTTGGTTGCC+AGG + Chr3:99545466-99545485 MsG0380017686.01.T01:CDS 55.0%
CAACGGTAGCTTCGATAGCC+TGG - Chr3:99548518-99548537 None:intergenic 55.0%
CGTGCGTGATGAGATGCTCT+TGG + Chr3:99547943-99547962 MsG0380017686.01.T01:CDS 55.0%
! AGAGCATCTCATCACGCACG+CGG - Chr3:99547943-99547962 None:intergenic 55.0%
! GATCTGGCTTGTGGACTCCA+AGG + Chr3:99546883-99546902 MsG0380017686.01.T01:CDS 55.0%
!! CGGTTGGCTTGATTGCCTGA+TGG - Chr3:99547349-99547368 None:intergenic 55.0%
GGTTCATGCTCATGGGCCCA+AGG - Chr3:99547205-99547224 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 99543977 99548813 99543977 ID=MsG0380017686.01;Name=MsG0380017686.01
Chr3 mRNA 99543977 99548813 99543977 ID=MsG0380017686.01.T01;Parent=MsG0380017686.01;Name=MsG0380017686.01.T01;_AED=0.31;_eAED=0.33;_QI=142|0.88|0.94|1|1|1|18|275|587
Chr3 exon 99543977 99544231 99543977 ID=MsG0380017686.01.T01:exon:2666;Parent=MsG0380017686.01.T01
Chr3 exon 99544737 99544857 99544737 ID=MsG0380017686.01.T01:exon:2667;Parent=MsG0380017686.01.T01
Chr3 exon 99545146 99545297 99545146 ID=MsG0380017686.01.T01:exon:2668;Parent=MsG0380017686.01.T01
Chr3 exon 99545382 99545487 99545382 ID=MsG0380017686.01.T01:exon:2669;Parent=MsG0380017686.01.T01
Chr3 exon 99545619 99545684 99545619 ID=MsG0380017686.01.T01:exon:2670;Parent=MsG0380017686.01.T01
Chr3 exon 99545796 99545891 99545796 ID=MsG0380017686.01.T01:exon:2671;Parent=MsG0380017686.01.T01
Chr3 exon 99546009 99546080 99546009 ID=MsG0380017686.01.T01:exon:2672;Parent=MsG0380017686.01.T01
Chr3 exon 99546164 99546247 99546164 ID=MsG0380017686.01.T01:exon:2673;Parent=MsG0380017686.01.T01
Chr3 exon 99546341 99546439 99546341 ID=MsG0380017686.01.T01:exon:2674;Parent=MsG0380017686.01.T01
Chr3 exon 99546719 99546766 99546719 ID=MsG0380017686.01.T01:exon:2675;Parent=MsG0380017686.01.T01
Chr3 exon 99546851 99547006 99546851 ID=MsG0380017686.01.T01:exon:2676;Parent=MsG0380017686.01.T01
Chr3 exon 99547154 99547252 99547154 ID=MsG0380017686.01.T01:exon:2677;Parent=MsG0380017686.01.T01
Chr3 exon 99547353 99547442 99547353 ID=MsG0380017686.01.T01:exon:2678;Parent=MsG0380017686.01.T01
Chr3 exon 99547532 99547609 99547532 ID=MsG0380017686.01.T01:exon:2679;Parent=MsG0380017686.01.T01
Chr3 exon 99547703 99547777 99547703 ID=MsG0380017686.01.T01:exon:2680;Parent=MsG0380017686.01.T01
Chr3 exon 99547881 99547971 99547881 ID=MsG0380017686.01.T01:exon:2681;Parent=MsG0380017686.01.T01
Chr3 exon 99548232 99548360 99548232 ID=MsG0380017686.01.T01:exon:2682;Parent=MsG0380017686.01.T01
Chr3 exon 99548450 99548813 99548450 ID=MsG0380017686.01.T01:exon:2683;Parent=MsG0380017686.01.T01
Chr3 five_prime_UTR 99543977 99544118 99543977 ID=MsG0380017686.01.T01:five_prime_utr;Parent=MsG0380017686.01.T01
Chr3 CDS 99544119 99544231 99544119 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99544737 99544857 99544737 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99545146 99545297 99545146 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99545382 99545487 99545382 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99545619 99545684 99545619 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99545796 99545891 99545796 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99546009 99546080 99546009 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99546164 99546247 99546164 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99546341 99546439 99546341 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99546719 99546766 99546719 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99546851 99547006 99546851 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99547154 99547252 99547154 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99547353 99547442 99547353 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99547532 99547609 99547532 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99547703 99547777 99547703 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99547881 99547971 99547881 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99548232 99548360 99548232 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 CDS 99548450 99548538 99548450 ID=MsG0380017686.01.T01:cds;Parent=MsG0380017686.01.T01
Chr3 three_prime_UTR 99548539 99548813 99548539 ID=MsG0380017686.01.T01:three_prime_utr;Parent=MsG0380017686.01.T01
Gene Sequence

>MsG0380017686.01.T01

ATGGCAACTGAGGATTTTGTGAATGGTGTTGGTGGTGGTGTTAAGGACCTTTATGGTGAGGATAGTGCTACAGAGGATCAACTTATCACACCATGGAATTTCTCTGTTGCTAGTGGATGCACTTTGCTGAGAGATCCACGCTACAACAAAGGACTTGCCTTCACTGAGAAAGAAAGAGATGCTCATTATGTTCGTGGCCTTTTGCCTCCTGCTGTCTTCACTCAAGAGCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTATGATCGATAATGTCGAAGAATTGCTACCTGTTGTTTACACTCCAACAGTTGGAGAAGCCTGTCAAAAATATGGAAGCATTTATAGGCGTCCTCAGGGTCTGTATATAAGTTTGAAGGAAAAAGGCAAAATCCTTGAGGTGCTTAAAAACTGGCCAGAAAAGACTATTCAAGTTATTGTTGTGACTGATGGTGAGCGAATATTAGGACTAGGCGATCTTGGTTGCCAGGGCATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCATTAGGAGGTGTTCGCCCTTCTTCATGTTTGCCTATAACCATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAATTCTACATTGGCCTTAGACAGAAGCGAGCAACTGGGAAGGAATATGCGGAGCTTCTAGAAGAGTTTATGCATGCAGTTAAGCAGAACTATGGGGAGAAAGTTCTTGTACAGTTTGAAGATTTTGCCAATCATAATGCTTTCGATCTTCTGGATAAATACAGCTCATCTCATCTTGTTTTCAATGATGATATACAGGGTACAGCATCTGTGGTATTAGCAGGATTGCTTGCTTCCCTTAAATTAGTTGGAGGAACTTTAGCTGACCACACATTCTTATTCTTAGGAGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAACAGACAAAAGCTCCGGTTGAAGAGACTCGCAAAAAGATCTGGCTTGTGGACTCCAAGGTAAAAATGCTTGAACTGTCTAGTATTACAATTCTAGATGGAAGTCGTGGATACGAGAAAAATGTAGAAAATAATATAGCTAATGAAAATGTTGATTATACAGGTCTTATTGTTAGCTCTCGTTTGCAATCCCTTCAACACTTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTGAAGGAGCTTCTAAATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGAAAGACATTTACCAAGGAGGTTGTTGAAGCCATGACATCCTTGAATGAGAAACCACTCATTCTTGCACTTTCCAACCCAACTTCACAATCTGAGTGCACAGCAGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATTTTCGCTAGTGGAAGCCCATTTGATCCCGTTGAATATGAAGGAAATTTTTTTGTTCCTGGACAGGCCAACAATGCTTACATTTTTCCCGGATTTGGTTTGGGTTTGATCATCTCTGGTGCAATCCGCGTGCGTGATGAGATGCTCTTGGCAGCCTCTGAAGCTTTGGCTGCACAAGTATCACAGGAGAACTATGATAAGGGACTGATATACCCTCCATTCACAAATATCAGAAAGATATCAGCCAACATTGCTGCTAGTGTTGCAGCTAAGACATACGAACTTGGTCTGGCTTCTCATTTACCTCGACCAAAGGATCTTGTAAAATACGCAGAAAGTTGCATGTACAGCCCAGGCTATCGAAGCTACCGTTGA
Protein sequence

>MsG0380017686.01.T01

MATEDFVNGVGGGVKDLYGEDSATEDQLITPWNFSVASGCTLLRDPRYNKGLAFTEKERDAHYVRGLLPPAVFTQELQERNERLFYKLMIDNVEELLPVVYTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPEKTIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYAELLEEFMHAVKQNYGEKVLVQFEDFANHNAFDLLDKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIWLVDSKVKMLELSSITILDGSRGYEKNVENNIANENVDYTGLIVSSRLQSLQHFKKPWAHEHEPVKELLNAVKAIKPTVLIGSSGVGKTFTKEVVEAMTSLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGNFFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSQENYDKGLIYPPFTNIRKISANIAASVAAKTYELGLASHLPRPKDLVKYAESCMYSPGYRSYR*